AutoCloner

Multiple sequence alignment - TraesCS7B01G010800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7B01G010800	chr7B	100.000	2258	0	0	1	2258	6922266	6920009	0.000000e+00	4170.0
1	TraesCS7B01G010800	chr7B	88.667	803	45	24	736	1508	6796753	6797539	0.000000e+00	937.0
2	TraesCS7B01G010800	chr7B	80.243	658	46	38	10	663	6795842	6796419	3.470000e-113	418.0
3	TraesCS7B01G010800	chr7B	79.710	483	53	24	966	1425	6755375	6755835	7.830000e-80	307.0
4	TraesCS7B01G010800	chr7B	80.882	272	43	4	997	1265	6783369	6783634	2.940000e-49	206.0
5	TraesCS7B01G010800	chr7B	77.577	388	42	21	314	690	6782633	6782986	2.290000e-45	193.0
6	TraesCS7B01G010800	chr7D	83.459	1457	101	76	124	1511	65389633	65391018	0.000000e+00	1227.0
7	TraesCS7B01G010800	chr7D	84.868	304	34	4	961	1258	64912474	64912771	1.700000e-76	296.0
8	TraesCS7B01G010800	chr7D	79.150	494	52	29	790	1259	64893656	64894122	6.100000e-76	294.0
9	TraesCS7B01G010800	chr7D	75.882	340	38	21	365	690	64911941	64912250	1.410000e-27	134.0
10	TraesCS7B01G010800	chr7D	92.405	79	5	1	2180	2257	65391003	65391081	6.590000e-21	111.0
11	TraesCS7B01G010800	chr7D	100.000	32	0	0	87	118	65389105	65389136	2.420000e-05	60.2
12	TraesCS7B01G010800	chr7A	91.530	791	52	10	728	1511	69526676	69527458	0.000000e+00	1075.0
13	TraesCS7B01G010800	chr7A	89.328	759	25	20	1	731	69525918	69526648	0.000000e+00	902.0
14	TraesCS7B01G010800	chr7A	86.655	562	41	21	736	1272	69363796	69364348	1.930000e-165	592.0
15	TraesCS7B01G010800	chr7A	81.616	495	47	25	202	691	69363055	69363510	9.850000e-99	370.0
16	TraesCS7B01G010800	chr7A	85.574	305	29	7	966	1259	69225131	69225431	2.820000e-79	305.0
17	TraesCS7B01G010800	chr7A	89.313	131	8	3	87	217	69362913	69363037	2.320000e-35	159.0
18	TraesCS7B01G010800	chr7A	86.232	138	14	4	554	690	69309970	69310103	6.500000e-31	145.0
19	TraesCS7B01G010800	chr7A	91.250	80	5	1	2180	2257	69527443	69527522	8.530000e-20	108.0
20	TraesCS7B01G010800	chr5B	95.692	650	26	1	1510	2157	530709265	530709914	0.000000e+00	1044.0
21	TraesCS7B01G010800	chr5B	95.282	657	27	2	1510	2164	606280296	606279642	0.000000e+00	1038.0
22	TraesCS7B01G010800	chr5B	94.864	662	32	1	1511	2170	677650704	677651365	0.000000e+00	1033.0
23	TraesCS7B01G010800	chr6B	95.267	655	29	1	1511	2163	51384043	51383389	0.000000e+00	1037.0
24	TraesCS7B01G010800	chr6B	94.737	665	30	4	1508	2169	478881253	478880591	0.000000e+00	1029.0
25	TraesCS7B01G010800	chr3B	95.267	655	29	1	1517	2169	820523916	820524570	0.000000e+00	1037.0
26	TraesCS7B01G010800	chr3B	94.856	661	32	1	1511	2169	685611995	685611335	0.000000e+00	1031.0
27	TraesCS7B01G010800	chr2B	95.378	649	28	1	1511	2157	436266089	436266737	0.000000e+00	1031.0
28	TraesCS7B01G010800	chr1B	94.825	657	32	1	1510	2164	504116492	504115836	0.000000e+00	1024.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7B01G010800	chr7B	6920009	6922266	2257	True	4170.000000	4170	100.000000	1	2258	1	chr7B.!!$R1	2257
1	TraesCS7B01G010800	chr7B	6795842	6797539	1697	False	677.500000	937	84.455000	10	1508	2	chr7B.!!$F3	1498
2	TraesCS7B01G010800	chr7D	65389105	65391081	1976	False	466.066667	1227	91.954667	87	2257	3	chr7D.!!$F3	2170
3	TraesCS7B01G010800	chr7D	64911941	64912771	830	False	215.000000	296	80.375000	365	1258	2	chr7D.!!$F2	893
4	TraesCS7B01G010800	chr7A	69525918	69527522	1604	False	695.000000	1075	90.702667	1	2257	3	chr7A.!!$F4	2256
5	TraesCS7B01G010800	chr7A	69362913	69364348	1435	False	373.666667	592	85.861333	87	1272	3	chr7A.!!$F3	1185
6	TraesCS7B01G010800	chr5B	530709265	530709914	649	False	1044.000000	1044	95.692000	1510	2157	1	chr5B.!!$F1	647
7	TraesCS7B01G010800	chr5B	606279642	606280296	654	True	1038.000000	1038	95.282000	1510	2164	1	chr5B.!!$R1	654
8	TraesCS7B01G010800	chr5B	677650704	677651365	661	False	1033.000000	1033	94.864000	1511	2170	1	chr5B.!!$F2	659
9	TraesCS7B01G010800	chr6B	51383389	51384043	654	True	1037.000000	1037	95.267000	1511	2163	1	chr6B.!!$R1	652
10	TraesCS7B01G010800	chr6B	478880591	478881253	662	True	1029.000000	1029	94.737000	1508	2169	1	chr6B.!!$R2	661
11	TraesCS7B01G010800	chr3B	820523916	820524570	654	False	1037.000000	1037	95.267000	1517	2169	1	chr3B.!!$F1	652
12	TraesCS7B01G010800	chr3B	685611335	685611995	660	True	1031.000000	1031	94.856000	1511	2169	1	chr3B.!!$R1	658
13	TraesCS7B01G010800	chr2B	436266089	436266737	648	False	1031.000000	1031	95.378000	1511	2157	1	chr2B.!!$F1	646
14	TraesCS7B01G010800	chr1B	504115836	504116492	656	True	1024.000000	1024	94.825000	1510	2164	1	chr1B.!!$R1	654

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
59	67	0.040336	CGAGCTGTCGGTATGCGTAT	60.04	55.0	0.0	0.0	42.87	3.06	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1826	2730	1.207089	TGGATTTGCTCGGATCTCGTT	59.793	47.619	0.0	0.0	40.32	3.85	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
41	42	4.343581	ATCGATGGCCAACGATCG	57.656	55.556	36.67	27.97	44.14	3.69
42	43	3.202467	TCGATGGCCAACGATCGA	58.798	55.556	31.48	26.56	46.17	3.59
56	64	0.999228	GATCGAGCTGTCGGTATGCG	60.999	60.000	0.00	0.00	46.80	4.73
59	67	0.040336	CGAGCTGTCGGTATGCGTAT	60.040	55.000	0.00	0.00	42.87	3.06
60	68	1.409412	GAGCTGTCGGTATGCGTATG	58.591	55.000	0.00	0.00	0.00	2.39
61	69	0.597637	AGCTGTCGGTATGCGTATGC	60.598	55.000	0.00	0.00	43.20	3.14
71	79	3.025619	GCGTATGCATGGGAGTGC	58.974	61.111	10.16	0.20	45.25	4.40
81	89	4.543590	GCATGGGAGTGCATAGTATAGT	57.456	45.455	0.00	0.00	44.43	2.12
118	131	2.417787	GGTGGTTACTCGCCTTTACGAT	60.418	50.000	0.00	0.00	42.02	3.73
119	132	2.856557	GTGGTTACTCGCCTTTACGATC	59.143	50.000	0.00	0.00	42.02	3.69
120	133	2.114825	GGTTACTCGCCTTTACGATCG	58.885	52.381	14.88	14.88	42.02	3.69
121	134	2.223340	GGTTACTCGCCTTTACGATCGA	60.223	50.000	24.34	2.23	42.02	3.59
138	646	1.134907	TCGAGTTAGGCGAATGGGAAC	60.135	52.381	0.00	0.00	34.45	3.62
203	748	1.626321	TGGCAAGGTCGATGGAGTTAA	59.374	47.619	0.00	0.00	0.00	2.01
234	783	3.244105	CGTGGACGCAACCTCTTG	58.756	61.111	0.00	0.00	0.00	3.02
235	784	1.300620	CGTGGACGCAACCTCTTGA	60.301	57.895	0.00	0.00	0.00	3.02
236	785	1.557443	CGTGGACGCAACCTCTTGAC	61.557	60.000	0.00	0.00	0.00	3.18
237	786	0.531974	GTGGACGCAACCTCTTGACA	60.532	55.000	0.00	0.00	0.00	3.58
238	787	0.396435	TGGACGCAACCTCTTGACAT	59.604	50.000	0.00	0.00	0.00	3.06
239	788	1.621317	TGGACGCAACCTCTTGACATA	59.379	47.619	0.00	0.00	0.00	2.29
240	789	2.236146	TGGACGCAACCTCTTGACATAT	59.764	45.455	0.00	0.00	0.00	1.78
271	824	1.863012	TGCGCGCTTACGTACGTAC	60.863	57.895	33.29	15.90	42.83	3.67
421	978	3.958147	ACCCATTCCCACGGATTTAATTC	59.042	43.478	0.00	0.00	0.00	2.17
451	1012	6.601613	TGTCCAATGGTGTAATGAAACCTATC	59.398	38.462	0.00	0.00	37.36	2.08
452	1013	5.820423	TCCAATGGTGTAATGAAACCTATCG	59.180	40.000	0.00	0.00	37.36	2.92
515	1076	5.664294	ACATGCATGAATGGAGCTTTTTA	57.336	34.783	32.75	0.00	31.46	1.52
636	1210	1.593196	TTTCTCGTCCAACTTGCCAG	58.407	50.000	0.00	0.00	0.00	4.85
727	1549	0.460311	GGGTGAGTGACGGTATGAGG	59.540	60.000	0.00	0.00	0.00	3.86
734	1587	1.544691	GTGACGGTATGAGGTCAGTGT	59.455	52.381	0.00	0.00	43.27	3.55
931	1815	0.238817	CACGACGGATCTAGCTAGCC	59.761	60.000	16.35	11.26	0.00	3.93
1277	2169	2.273370	TTAGGTAAGCTCGCACGAAG	57.727	50.000	0.00	0.00	0.00	3.79
1307	2202	2.061773	CTTGTCAAGTAGCCTGTGTCG	58.938	52.381	4.27	0.00	0.00	4.35
1393	2293	7.036996	TGTTGCTCAAACATGAGATTTGTAA	57.963	32.000	9.89	0.00	43.96	2.41
1471	2371	2.165301	GTTTCCCGACTCGCCGATG	61.165	63.158	0.00	0.00	0.00	3.84
1501	2405	2.774439	CAACGGGAGTGGTTTTTCTG	57.226	50.000	0.00	0.00	46.69	3.02
1507	2411	1.269778	GGAGTGGTTTTTCTGCCAAGC	60.270	52.381	0.00	0.00	36.41	4.01
1508	2412	1.408702	GAGTGGTTTTTCTGCCAAGCA	59.591	47.619	0.00	0.00	36.41	3.91
1706	2610	6.040247	CACAACTTGTTGTAGTAGACAGTCA	58.960	40.000	17.26	0.00	39.88	3.41
1729	2633	2.678934	TCGTCGTGCTAAGGCCCT	60.679	61.111	0.00	0.00	37.74	5.19
1802	2706	6.442513	AGATCAGAAAAATCCAATCCGAAC	57.557	37.500	0.00	0.00	0.00	3.95
1826	2730	2.110990	CACGAACGTAGACGAACAACA	58.889	47.619	9.41	0.00	43.02	3.33
1859	2763	5.297776	CGAGCAAATCCACCAAAGATAGATT	59.702	40.000	0.00	0.00	0.00	2.40
1861	2765	6.430007	AGCAAATCCACCAAAGATAGATTCT	58.570	36.000	0.00	0.00	35.70	2.40
2055	2961	4.335647	CCCTTGCCGAGCCACTGT	62.336	66.667	0.00	0.00	0.00	3.55
2140	3046	3.876309	AACCCTAGCTTTTTGTGGAGA	57.124	42.857	0.00	0.00	0.00	3.71
2170	3076	2.823829	GCGGCGGCTACAAAGGATG	61.824	63.158	9.78	0.00	35.83	3.51
2171	3077	1.449601	CGGCGGCTACAAAGGATGT	60.450	57.895	7.61	0.00	46.36	3.06
2172	3078	0.179094	CGGCGGCTACAAAGGATGTA	60.179	55.000	7.61	0.00	43.63	2.29
2173	3079	1.540363	CGGCGGCTACAAAGGATGTAT	60.540	52.381	7.61	0.00	43.63	2.29
2174	3080	1.873591	GGCGGCTACAAAGGATGTATG	59.126	52.381	0.00	0.00	43.63	2.39
2175	3081	2.484770	GGCGGCTACAAAGGATGTATGA	60.485	50.000	0.00	0.00	43.63	2.15
2176	3082	2.544267	GCGGCTACAAAGGATGTATGAC	59.456	50.000	0.00	0.00	43.63	3.06
2177	3083	3.131396	CGGCTACAAAGGATGTATGACC	58.869	50.000	0.00	0.00	43.63	4.02
2178	3084	3.477530	GGCTACAAAGGATGTATGACCC	58.522	50.000	0.00	0.00	43.63	4.46
2179	3085	3.136626	GGCTACAAAGGATGTATGACCCT	59.863	47.826	0.00	0.00	43.63	4.34
2180	3086	4.385310	GGCTACAAAGGATGTATGACCCTT	60.385	45.833	0.00	0.00	43.63	3.95
2182	3088	5.652452	GCTACAAAGGATGTATGACCCTTTT	59.348	40.000	0.00	0.00	45.15	2.27
2183	3089	6.183360	GCTACAAAGGATGTATGACCCTTTTC	60.183	42.308	0.00	0.00	45.15	2.29
2184	3090	5.892348	ACAAAGGATGTATGACCCTTTTCT	58.108	37.500	0.00	0.00	45.15	2.52
2185	3091	5.711976	ACAAAGGATGTATGACCCTTTTCTG	59.288	40.000	0.00	0.00	45.15	3.02
2186	3092	3.891049	AGGATGTATGACCCTTTTCTGC	58.109	45.455	0.00	0.00	0.00	4.26
2187	3093	2.952310	GGATGTATGACCCTTTTCTGCC	59.048	50.000	0.00	0.00	0.00	4.85
2188	3094	3.620488	GATGTATGACCCTTTTCTGCCA	58.380	45.455	0.00	0.00	0.00	4.92
2189	3095	3.517296	TGTATGACCCTTTTCTGCCAA	57.483	42.857	0.00	0.00	0.00	4.52
2190	3096	3.420893	TGTATGACCCTTTTCTGCCAAG	58.579	45.455	0.00	0.00	0.00	3.61
2239	3147	1.673400	TCCACCGTTGAATGTGTTGTG	59.327	47.619	0.00	0.00	0.00	3.33
2257	3165	3.924144	TGTGCATTTGGAATTTAGTGGC	58.076	40.909	0.00	0.00	0.00	5.01

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
39	40	1.091197	TACGCATACCGACAGCTCGA	61.091	55.000	0.00	0.00	43.06	4.04
40	41	0.040336	ATACGCATACCGACAGCTCG	60.040	55.000	0.00	0.00	41.02	5.03
41	42	1.409412	CATACGCATACCGACAGCTC	58.591	55.000	0.00	0.00	41.02	4.09
42	43	0.597637	GCATACGCATACCGACAGCT	60.598	55.000	0.00	0.00	41.02	4.24
60	68	4.543590	ACTATACTATGCACTCCCATGC	57.456	45.455	0.00	0.00	46.32	4.06
61	69	6.071108	AGCTAACTATACTATGCACTCCCATG	60.071	42.308	0.00	0.00	0.00	3.66
62	70	6.019748	AGCTAACTATACTATGCACTCCCAT	58.980	40.000	0.00	0.00	0.00	4.00
63	71	5.394738	AGCTAACTATACTATGCACTCCCA	58.605	41.667	0.00	0.00	0.00	4.37
64	72	5.986501	AGCTAACTATACTATGCACTCCC	57.013	43.478	0.00	0.00	0.00	4.30
65	73	6.376018	AGCTAGCTAACTATACTATGCACTCC	59.624	42.308	17.69	0.00	0.00	3.85
66	74	7.385778	AGCTAGCTAACTATACTATGCACTC	57.614	40.000	17.69	0.00	0.00	3.51
67	75	7.066525	GCTAGCTAGCTAACTATACTATGCACT	59.933	40.741	33.71	0.00	45.62	4.40
68	76	7.190871	GCTAGCTAGCTAACTATACTATGCAC	58.809	42.308	33.71	2.82	45.62	4.57
69	77	7.323049	GCTAGCTAGCTAACTATACTATGCA	57.677	40.000	33.71	0.00	45.62	3.96
118	131	1.134907	GTTCCCATTCGCCTAACTCGA	60.135	52.381	0.00	0.00	0.00	4.04
119	132	1.287425	GTTCCCATTCGCCTAACTCG	58.713	55.000	0.00	0.00	0.00	4.18
120	133	1.209747	AGGTTCCCATTCGCCTAACTC	59.790	52.381	0.00	0.00	0.00	3.01
121	134	1.209747	GAGGTTCCCATTCGCCTAACT	59.790	52.381	0.00	0.00	0.00	2.24
138	646	2.941720	GTCATTGAGCTAGGCAAAGAGG	59.058	50.000	0.00	0.00	0.00	3.69
142	650	2.233676	TCGAGTCATTGAGCTAGGCAAA	59.766	45.455	0.00	0.00	0.00	3.68
203	748	0.753479	TCCACGCACACACCCATTTT	60.753	50.000	0.00	0.00	0.00	1.82
234	783	2.919387	GCACGCATGCCATTGATATGTC	60.919	50.000	13.15	0.00	46.97	3.06
235	784	1.001048	GCACGCATGCCATTGATATGT	60.001	47.619	13.15	0.00	46.97	2.29
236	785	1.693467	GCACGCATGCCATTGATATG	58.307	50.000	13.15	0.00	46.97	1.78
271	824	6.929049	TGATGAACTTTGTCCACACTACTTAG	59.071	38.462	0.00	0.00	0.00	2.18
318	875	2.159693	GCACATGCATGCATATCTCTCG	60.160	50.000	31.73	19.71	45.39	4.04
421	978	4.525996	TCATTACACCATTGGACATGAGG	58.474	43.478	10.37	0.00	0.00	3.86
451	1012	4.083855	CCAACCAACCATCATTATCGATCG	60.084	45.833	9.36	9.36	0.00	3.69
452	1013	4.821805	ACCAACCAACCATCATTATCGATC	59.178	41.667	0.00	0.00	0.00	3.69
572	1141	2.216898	CCTCCCGATCAGATTTTCAGC	58.783	52.381	0.00	0.00	0.00	4.26
636	1210	5.671742	ATGCCTTGTTGCAAATACAAAAC	57.328	34.783	0.00	0.00	45.84	2.43
697	1515	1.300697	ACTCACCCAACGAGAACGC	60.301	57.895	0.00	0.00	43.96	4.84
727	1549	0.527600	TGTGTCGCACTCACACTGAC	60.528	55.000	10.54	0.00	43.93	3.51
734	1587	2.786539	GATGGCCTGTGTCGCACTCA	62.787	60.000	3.32	1.79	35.11	3.41
816	1682	4.233789	CGCTGAGCTGATTTATAGGAGAC	58.766	47.826	1.78	0.00	0.00	3.36
931	1815	0.528684	GGTAACGCTCCAGCTAGCTG	60.529	60.000	33.58	33.58	40.49	4.24
937	1821	1.269831	CCTATGAGGTAACGCTCCAGC	60.270	57.143	0.00	0.00	46.39	4.85
938	1822	1.269831	GCCTATGAGGTAACGCTCCAG	60.270	57.143	0.00	0.00	46.39	3.86
939	1823	0.750850	GCCTATGAGGTAACGCTCCA	59.249	55.000	0.00	0.00	46.39	3.86
940	1824	1.000052	GAGCCTATGAGGTAACGCTCC	60.000	57.143	0.00	0.00	46.39	4.70
941	1825	1.681793	TGAGCCTATGAGGTAACGCTC	59.318	52.381	0.00	0.00	42.38	5.03
1060	1946	2.270205	CTGCAGGTGATCGGCCTT	59.730	61.111	5.57	0.00	35.67	4.35
1125	2011	2.035155	TCCCTCGAGAAGACGGCA	59.965	61.111	15.71	0.00	0.00	5.69
1277	2169	1.370900	CTTGACAAGCGCTTGCACC	60.371	57.895	41.96	31.43	44.03	5.01
1307	2202	2.282701	TGCGTACATCGTCCTTAACC	57.717	50.000	0.00	0.00	42.13	2.85
1386	2286	5.700832	TGCTTCAGAGACACGAATTACAAAT	59.299	36.000	0.00	0.00	0.00	2.32
1393	2293	1.702886	CGTGCTTCAGAGACACGAAT	58.297	50.000	17.94	0.00	46.55	3.34
1427	2327	8.450964	CGTGAAAGATCAAGTAAACATACCATT	58.549	33.333	0.00	0.00	37.30	3.16
1471	2371	2.040178	ACTCCCGTTGTATCTCCATCC	58.960	52.381	0.00	0.00	0.00	3.51
1518	2422	6.844696	TGAATAGATCGGAAATTTTCTCGG	57.155	37.500	8.93	0.27	0.00	4.63
1706	2610	1.669211	GCCTTAGCACGACGACTTCTT	60.669	52.381	0.00	0.00	39.53	2.52
1729	2633	2.920384	TGGTGCGCTGGTCCTACA	60.920	61.111	9.73	0.00	0.00	2.74
1802	2706	1.445731	GTTCGTCTACGTTCGTGTGTG	59.554	52.381	8.14	0.00	40.80	3.82
1826	2730	1.207089	TGGATTTGCTCGGATCTCGTT	59.793	47.619	0.00	0.00	40.32	3.85
1859	2763	1.304217	GGAGGTGTGTCTCCGGAGA	60.304	63.158	30.49	30.49	43.19	3.71
1924	2828	3.780850	AGATGGAATAAAGGTCTTCCCGT	59.219	43.478	0.00	0.00	40.22	5.28
2011	2915	2.718563	GGAGGGCTCCGTTTTTAATCA	58.281	47.619	0.00	0.00	40.36	2.57
2140	3046	3.775654	CGCCGCCTCCTCCTTCTT	61.776	66.667	0.00	0.00	0.00	2.52
2170	3076	2.164422	GCTTGGCAGAAAAGGGTCATAC	59.836	50.000	0.00	0.00	0.00	2.39
2171	3077	2.224992	TGCTTGGCAGAAAAGGGTCATA	60.225	45.455	0.00	0.00	33.32	2.15
2172	3078	1.260544	GCTTGGCAGAAAAGGGTCAT	58.739	50.000	0.00	0.00	0.00	3.06
2173	3079	0.106268	TGCTTGGCAGAAAAGGGTCA	60.106	50.000	0.00	0.00	33.32	4.02
2174	3080	1.260544	ATGCTTGGCAGAAAAGGGTC	58.739	50.000	0.00	0.00	43.65	4.46
2175	3081	1.620323	GAATGCTTGGCAGAAAAGGGT	59.380	47.619	0.00	0.00	43.65	4.34
2176	3082	1.897802	AGAATGCTTGGCAGAAAAGGG	59.102	47.619	0.00	0.00	43.65	3.95
2177	3083	4.996788	ATAGAATGCTTGGCAGAAAAGG	57.003	40.909	0.00	0.00	43.65	3.11
2178	3084	4.565564	GCAATAGAATGCTTGGCAGAAAAG	59.434	41.667	0.00	0.00	43.65	2.27
2179	3085	4.497300	GCAATAGAATGCTTGGCAGAAAA	58.503	39.130	0.00	0.00	43.65	2.29
2180	3086	4.114058	GCAATAGAATGCTTGGCAGAAA	57.886	40.909	0.00	0.00	43.65	2.52
2181	3087	3.788333	GCAATAGAATGCTTGGCAGAA	57.212	42.857	0.00	0.00	43.65	3.02

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.