Multiple sequence alignment - TraesCS7B01G010600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G010600 chr7B 100.000 2258 0 0 1 2258 6796030 6798287 0.000000e+00 4170.0
1 TraesCS7B01G010600 chr7B 88.586 806 46 24 724 1513 6921531 6920756 0.000000e+00 937.0
2 TraesCS7B01G010600 chr7B 75.816 827 103 57 638 1428 6755071 6755836 1.670000e-86 329.0
3 TraesCS7B01G010600 chr7B 78.216 482 58 19 1 464 6782568 6783020 4.780000e-67 265.0
4 TraesCS7B01G010600 chr7B 78.202 445 39 25 1 390 6922045 6921604 4.850000e-57 231.0
5 TraesCS7B01G010600 chr7B 80.515 272 44 4 997 1265 6783369 6783634 1.370000e-47 200.0
6 TraesCS7B01G010600 chr7D 88.909 1641 112 28 475 2110 65390018 65391593 0.000000e+00 1958.0
7 TraesCS7B01G010600 chr7D 88.579 394 30 4 9 392 65389742 65390130 4.390000e-127 464.0
8 TraesCS7B01G010600 chr7D 76.959 651 67 53 638 1259 64893526 64894122 6.100000e-76 294.0
9 TraesCS7B01G010600 chr7D 84.365 307 30 9 961 1258 64912474 64912771 3.670000e-73 285.0
10 TraesCS7B01G010600 chr7D 77.582 397 48 18 77 449 64911890 64912269 3.800000e-48 202.0
11 TraesCS7B01G010600 chr7A 85.012 1728 135 58 482 2178 69526457 69528091 0.000000e+00 1642.0
12 TraesCS7B01G010600 chr7A 89.313 1310 66 25 1 1272 69363075 69364348 0.000000e+00 1576.0
13 TraesCS7B01G010600 chr7A 85.246 305 30 6 966 1259 69225131 69225431 1.310000e-77 300.0
14 TraesCS7B01G010600 chr7A 78.788 495 41 24 1 439 69526121 69526607 7.950000e-70 274.0
15 TraesCS7B01G010600 chr7A 78.042 378 53 13 100 465 69309780 69310139 6.320000e-51 211.0
16 TraesCS7B01G010600 chr7A 97.826 46 1 0 814 859 69225007 69225052 1.860000e-11 80.5
17 TraesCS7B01G010600 chr4B 81.879 298 46 8 1595 1887 654709435 654709729 6.230000e-61 244.0
18 TraesCS7B01G010600 chr5D 78.000 400 60 24 1609 1987 542540863 542540471 2.260000e-55 226.0
19 TraesCS7B01G010600 chr4A 78.173 394 57 19 1609 1979 54725349 54724962 8.120000e-55 224.0
20 TraesCS7B01G010600 chrUn 77.513 378 65 15 1609 1969 189564145 189564519 2.270000e-50 209.0
21 TraesCS7B01G010600 chrUn 77.513 378 65 15 1609 1969 189577835 189578209 2.270000e-50 209.0
22 TraesCS7B01G010600 chrUn 77.165 381 67 15 1609 1972 279541057 279540680 1.060000e-48 204.0
23 TraesCS7B01G010600 chrUn 76.762 383 67 16 1609 1972 154540360 154539981 6.360000e-46 195.0
24 TraesCS7B01G010600 chr3A 78.502 307 49 11 1688 1980 480155963 480155660 3.830000e-43 185.0
25 TraesCS7B01G010600 chr3B 79.771 262 45 6 1611 1868 525605192 525605449 1.380000e-42 183.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G010600 chr7B 6796030 6798287 2257 False 4170.0 4170 100.0000 1 2258 1 chr7B.!!$F2 2257
1 TraesCS7B01G010600 chr7B 6920756 6922045 1289 True 584.0 937 83.3940 1 1513 2 chr7B.!!$R1 1512
2 TraesCS7B01G010600 chr7B 6755071 6755836 765 False 329.0 329 75.8160 638 1428 1 chr7B.!!$F1 790
3 TraesCS7B01G010600 chr7B 6782568 6783634 1066 False 232.5 265 79.3655 1 1265 2 chr7B.!!$F3 1264
4 TraesCS7B01G010600 chr7D 65389742 65391593 1851 False 1211.0 1958 88.7440 9 2110 2 chr7D.!!$F3 2101
5 TraesCS7B01G010600 chr7D 64893526 64894122 596 False 294.0 294 76.9590 638 1259 1 chr7D.!!$F1 621
6 TraesCS7B01G010600 chr7D 64911890 64912771 881 False 243.5 285 80.9735 77 1258 2 chr7D.!!$F2 1181
7 TraesCS7B01G010600 chr7A 69363075 69364348 1273 False 1576.0 1576 89.3130 1 1272 1 chr7A.!!$F2 1271
8 TraesCS7B01G010600 chr7A 69526121 69528091 1970 False 958.0 1642 81.9000 1 2178 2 chr7A.!!$F4 2177

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
399 496 0.250793 TGGCGTATATATTGGGCCGG 59.749 55.0 0.0 0.0 46.66 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1480 1732 0.110486 AAACCACTCCCGTTGCATCT 59.89 50.0 0.0 0.0 0.0 2.9 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
102 138 4.158579 GGTGAGAGATATGCATGTATCCGA 59.841 45.833 13.67 0.00 32.62 4.55
103 139 5.098893 GTGAGAGATATGCATGTATCCGAC 58.901 45.833 13.67 7.65 32.62 4.79
238 302 4.566360 GGTCCAACAAACAATGTCAAACAG 59.434 41.667 0.00 0.00 42.99 3.16
282 359 6.449635 TTTGAGGTTTGCATGGATATGTAC 57.550 37.500 0.00 0.00 36.65 2.90
313 396 1.453155 TCTTCTGCCCGAAAATCTGC 58.547 50.000 0.00 0.00 0.00 4.26
392 489 8.105097 TGTATTTGCAACATGGCGTATATATT 57.895 30.769 0.00 0.00 36.28 1.28
393 490 8.020244 TGTATTTGCAACATGGCGTATATATTG 58.980 33.333 0.00 0.00 36.28 1.90
394 491 5.369685 TTGCAACATGGCGTATATATTGG 57.630 39.130 0.00 0.00 36.28 3.16
395 492 3.755905 TGCAACATGGCGTATATATTGGG 59.244 43.478 0.00 0.00 36.28 4.12
396 493 3.427503 GCAACATGGCGTATATATTGGGC 60.428 47.826 0.00 0.00 0.00 5.36
397 494 2.999331 ACATGGCGTATATATTGGGCC 58.001 47.619 12.14 12.14 44.00 5.80
398 495 1.939934 CATGGCGTATATATTGGGCCG 59.060 52.381 13.45 0.04 46.66 6.13
399 496 0.250793 TGGCGTATATATTGGGCCGG 59.749 55.000 0.00 0.00 46.66 6.13
400 497 0.251073 GGCGTATATATTGGGCCGGT 59.749 55.000 1.90 0.00 33.58 5.28
401 498 1.481772 GGCGTATATATTGGGCCGGTA 59.518 52.381 1.90 0.00 33.58 4.02
402 499 2.103601 GGCGTATATATTGGGCCGGTAT 59.896 50.000 1.90 2.20 33.58 2.73
403 500 3.321682 GGCGTATATATTGGGCCGGTATA 59.678 47.826 1.90 4.60 33.58 1.47
404 501 4.020839 GGCGTATATATTGGGCCGGTATAT 60.021 45.833 18.65 18.65 33.58 0.86
411 508 0.892755 TGGGCCGGTATATGATCGAC 59.107 55.000 1.90 0.00 0.00 4.20
460 557 1.368374 GTTTTCGTTCCGTGCGTGG 60.368 57.895 0.00 0.00 0.00 4.94
462 559 4.973055 TTCGTTCCGTGCGTGGGG 62.973 66.667 0.00 0.00 0.00 4.96
468 575 3.697747 CCGTGCGTGGGGGTTCTA 61.698 66.667 0.00 0.00 0.00 2.10
515 622 3.126831 CTCCTTCCTGAAAATCCGATCG 58.873 50.000 8.51 8.51 0.00 3.69
517 624 2.213499 CTTCCTGAAAATCCGATCGGG 58.787 52.381 32.79 15.21 42.45 5.14
531 638 3.501911 CGGGAGGGGCCATGGAAT 61.502 66.667 18.40 0.00 38.95 3.01
532 639 2.199535 GGGAGGGGCCATGGAATG 59.800 66.667 18.40 0.00 46.21 2.67
545 652 4.540359 CATGGAATGGAAAAGAAAGGCA 57.460 40.909 0.00 0.00 41.79 4.75
686 799 0.681733 TTGGGTGAGTGAGAGTGAGC 59.318 55.000 0.00 0.00 0.00 4.26
1032 1236 2.501128 GCCGTGCTCATCCTGCTA 59.499 61.111 0.00 0.00 0.00 3.49
1273 1504 4.051922 CCACTAATTAGGTAAGCTCGCAG 58.948 47.826 16.73 0.00 0.00 5.18
1288 1519 3.349006 CAGGAACGTGCAAGCGCT 61.349 61.111 2.64 2.64 39.64 5.92
1289 1520 2.591715 AGGAACGTGCAAGCGCTT 60.592 55.556 18.98 18.98 39.64 4.68
1290 1521 2.427410 GGAACGTGCAAGCGCTTG 60.427 61.111 39.20 39.20 43.14 4.01
1477 1729 1.587054 GACCCGCCTATCGATGGAG 59.413 63.158 10.78 10.02 41.67 3.86
1478 1730 0.894184 GACCCGCCTATCGATGGAGA 60.894 60.000 10.78 0.00 41.67 3.71
1479 1731 0.251832 ACCCGCCTATCGATGGAGAT 60.252 55.000 10.78 0.54 41.67 2.75
1480 1732 1.005569 ACCCGCCTATCGATGGAGATA 59.994 52.381 10.78 0.00 41.67 1.98
1520 1773 6.264744 GGTTTTCTACCAAGCCTTATATTCCC 59.735 42.308 0.00 0.00 46.92 3.97
1536 1789 9.494271 CTTATATTCCCATATAGCGTGCATTAT 57.506 33.333 0.00 0.00 30.81 1.28
1537 1790 7.969536 ATATTCCCATATAGCGTGCATTATC 57.030 36.000 0.00 0.00 0.00 1.75
1539 1792 3.517500 TCCCATATAGCGTGCATTATCCA 59.482 43.478 0.00 0.00 0.00 3.41
1540 1793 3.623060 CCCATATAGCGTGCATTATCCAC 59.377 47.826 0.00 0.00 0.00 4.02
1602 1859 7.767250 AGATACGGAGAGAATATCACATGAA 57.233 36.000 0.00 0.00 0.00 2.57
1603 1860 8.183104 AGATACGGAGAGAATATCACATGAAA 57.817 34.615 0.00 0.00 0.00 2.69
1604 1861 8.303156 AGATACGGAGAGAATATCACATGAAAG 58.697 37.037 0.00 0.00 0.00 2.62
1605 1862 6.227298 ACGGAGAGAATATCACATGAAAGT 57.773 37.500 0.00 0.00 0.00 2.66
1606 1863 7.348080 ACGGAGAGAATATCACATGAAAGTA 57.652 36.000 0.00 0.00 0.00 2.24
1607 1864 7.782049 ACGGAGAGAATATCACATGAAAGTAA 58.218 34.615 0.00 0.00 0.00 2.24
1608 1865 8.258007 ACGGAGAGAATATCACATGAAAGTAAA 58.742 33.333 0.00 0.00 0.00 2.01
1609 1866 9.265901 CGGAGAGAATATCACATGAAAGTAAAT 57.734 33.333 0.00 0.00 0.00 1.40
1691 1950 2.443958 AAAAGGGATGCTAAGAGGGC 57.556 50.000 0.00 0.00 0.00 5.19
1695 1954 1.203187 AGGGATGCTAAGAGGGCGATA 60.203 52.381 0.00 0.00 0.00 2.92
1696 1955 1.623811 GGGATGCTAAGAGGGCGATAA 59.376 52.381 0.00 0.00 0.00 1.75
1787 2046 8.454106 GCAATGATTAGTGATGTTTACTGTTCT 58.546 33.333 0.00 0.00 0.00 3.01
1800 2059 8.840833 TGTTTACTGTTCTGCACTATTCAATA 57.159 30.769 0.00 0.00 0.00 1.90
1826 2085 9.877178 ATTAATGTTGTTTTCTTTTGTACCACA 57.123 25.926 0.00 0.00 0.00 4.17
1832 2091 8.539674 GTTGTTTTCTTTTGTACCACATCAATC 58.460 33.333 0.00 0.00 0.00 2.67
1880 2139 7.920160 TTCACATGCTAATAGAACATCACAA 57.080 32.000 0.00 0.00 0.00 3.33
1882 2141 8.510243 TCACATGCTAATAGAACATCACAATT 57.490 30.769 0.00 0.00 0.00 2.32
1896 2155 8.519799 AACATCACAATTTTAAGATCCCGTAT 57.480 30.769 0.00 0.00 0.00 3.06
1931 2190 9.739786 GAAACTTTAAAACACTGTTTTCACATG 57.260 29.630 20.68 11.88 32.01 3.21
1932 2191 7.826260 ACTTTAAAACACTGTTTTCACATGG 57.174 32.000 20.68 10.45 30.39 3.66
1933 2192 7.382898 ACTTTAAAACACTGTTTTCACATGGT 58.617 30.769 20.68 10.94 30.39 3.55
1934 2193 7.875554 ACTTTAAAACACTGTTTTCACATGGTT 59.124 29.630 20.68 0.00 33.00 3.67
1935 2194 8.608844 TTTAAAACACTGTTTTCACATGGTTT 57.391 26.923 20.68 0.00 39.16 3.27
1936 2195 8.608844 TTAAAACACTGTTTTCACATGGTTTT 57.391 26.923 20.68 15.55 43.84 2.43
1937 2196 6.720012 AAACACTGTTTTCACATGGTTTTC 57.280 33.333 1.00 0.00 36.43 2.29
1938 2197 5.398603 ACACTGTTTTCACATGGTTTTCA 57.601 34.783 0.00 0.00 30.39 2.69
1939 2198 5.976458 ACACTGTTTTCACATGGTTTTCAT 58.024 33.333 0.00 0.00 36.31 2.57
1940 2199 6.042143 ACACTGTTTTCACATGGTTTTCATC 58.958 36.000 0.00 0.00 32.92 2.92
1972 2241 4.379394 CCGTAACTTGGTTTCCATGTGATG 60.379 45.833 7.83 6.33 40.31 3.07
2002 2271 8.296713 TCTCAAGATTAAAACATTACAAGGCAC 58.703 33.333 0.00 0.00 0.00 5.01
2188 2457 8.608844 AACTTGGTCAGAATCTTTAACTAGTG 57.391 34.615 0.00 0.00 0.00 2.74
2189 2458 7.963532 ACTTGGTCAGAATCTTTAACTAGTGA 58.036 34.615 0.00 0.00 0.00 3.41
2190 2459 7.873505 ACTTGGTCAGAATCTTTAACTAGTGAC 59.126 37.037 0.00 0.00 33.77 3.67
2191 2460 7.540474 TGGTCAGAATCTTTAACTAGTGACT 57.460 36.000 0.00 0.00 34.72 3.41
2192 2461 7.378966 TGGTCAGAATCTTTAACTAGTGACTG 58.621 38.462 0.00 0.00 34.72 3.51
2193 2462 7.232737 TGGTCAGAATCTTTAACTAGTGACTGA 59.767 37.037 0.00 0.00 34.72 3.41
2194 2463 8.254508 GGTCAGAATCTTTAACTAGTGACTGAT 58.745 37.037 0.00 0.00 34.72 2.90
2197 2466 9.243637 CAGAATCTTTAACTAGTGACTGATAGC 57.756 37.037 0.00 0.00 0.00 2.97
2198 2467 8.972127 AGAATCTTTAACTAGTGACTGATAGCA 58.028 33.333 0.00 0.00 0.00 3.49
2199 2468 9.587772 GAATCTTTAACTAGTGACTGATAGCAA 57.412 33.333 0.00 0.00 0.00 3.91
2219 2488 4.890378 CAATAGATGCATGCACGCTATAC 58.110 43.478 30.14 15.58 31.23 1.47
2220 2489 2.531522 AGATGCATGCACGCTATACA 57.468 45.000 25.37 0.00 0.00 2.29
2221 2490 2.410939 AGATGCATGCACGCTATACAG 58.589 47.619 25.37 0.00 0.00 2.74
2222 2491 0.870393 ATGCATGCACGCTATACAGC 59.130 50.000 25.37 0.00 44.90 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
102 138 1.153429 GGCCGCCGTAATCTTCAGT 60.153 57.895 0.00 0.00 0.00 3.41
103 139 2.237751 CGGCCGCCGTAATCTTCAG 61.238 63.158 24.08 0.00 42.73 3.02
136 176 1.494721 GGGTATCTTGGGCCAGATCAA 59.505 52.381 17.94 0.48 35.08 2.57
238 302 4.525912 AAAAGTGAAAGACATCCATGCC 57.474 40.909 0.00 0.00 0.00 4.40
279 352 3.482112 GCAGAAGAAATCTCGCGTTGTAC 60.482 47.826 5.77 0.00 35.73 2.90
282 359 1.201965 GGCAGAAGAAATCTCGCGTTG 60.202 52.381 5.77 0.00 35.73 4.10
313 396 2.137177 TTTCTTTGGCCCCTCCCGAG 62.137 60.000 0.00 0.00 0.00 4.63
392 489 0.892755 GTCGATCATATACCGGCCCA 59.107 55.000 0.00 0.00 0.00 5.36
393 490 0.175073 GGTCGATCATATACCGGCCC 59.825 60.000 0.00 0.00 41.74 5.80
394 491 3.735181 GGTCGATCATATACCGGCC 57.265 57.895 0.00 0.00 40.97 6.13
395 492 1.271379 TGTGGTCGATCATATACCGGC 59.729 52.381 0.00 0.00 35.98 6.13
396 493 2.667448 CGTGTGGTCGATCATATACCGG 60.667 54.545 0.00 0.00 35.98 5.28
397 494 2.581637 CGTGTGGTCGATCATATACCG 58.418 52.381 0.00 0.00 35.98 4.02
398 495 2.352421 CCCGTGTGGTCGATCATATACC 60.352 54.545 0.00 0.00 0.00 2.73
399 496 2.352421 CCCCGTGTGGTCGATCATATAC 60.352 54.545 0.00 1.01 0.00 1.47
400 497 1.890489 CCCCGTGTGGTCGATCATATA 59.110 52.381 0.00 0.00 0.00 0.86
401 498 0.679505 CCCCGTGTGGTCGATCATAT 59.320 55.000 0.00 0.00 0.00 1.78
402 499 2.023414 GCCCCGTGTGGTCGATCATA 62.023 60.000 0.00 0.00 0.00 2.15
403 500 2.900273 CCCCGTGTGGTCGATCAT 59.100 61.111 0.00 0.00 0.00 2.45
404 501 4.077184 GCCCCGTGTGGTCGATCA 62.077 66.667 0.00 0.00 0.00 2.92
460 557 9.262358 GCATTATCGATATTTAGATAGAACCCC 57.738 37.037 5.84 0.00 31.83 4.95
462 559 9.731819 TCGCATTATCGATATTTAGATAGAACC 57.268 33.333 5.84 0.00 33.02 3.62
515 622 2.199535 CATTCCATGGCCCCTCCC 59.800 66.667 6.96 0.00 0.00 4.30
531 638 4.400529 GAAAAGGTGCCTTTCTTTTCCA 57.599 40.909 15.66 0.00 46.24 3.53
537 644 1.318576 CGTGGAAAAGGTGCCTTTCT 58.681 50.000 15.66 7.24 44.50 2.52
538 645 1.001706 GACGTGGAAAAGGTGCCTTTC 60.002 52.381 15.66 9.69 44.50 2.62
539 646 1.029681 GACGTGGAAAAGGTGCCTTT 58.970 50.000 10.20 10.20 46.90 3.11
540 647 0.822121 GGACGTGGAAAAGGTGCCTT 60.822 55.000 0.00 0.00 37.98 4.35
541 648 1.228154 GGACGTGGAAAAGGTGCCT 60.228 57.895 0.00 0.00 0.00 4.75
545 652 2.021457 CAAGTTGGACGTGGAAAAGGT 58.979 47.619 0.00 0.00 0.00 3.50
686 799 2.169789 CAGCGACGAGGGCAATGAG 61.170 63.158 0.00 0.00 0.00 2.90
1124 1334 0.103937 CTCCCTCGAGAAGATGGTGC 59.896 60.000 15.71 0.00 38.52 5.01
1129 1348 1.830408 CCGCCTCCCTCGAGAAGAT 60.830 63.158 15.71 0.00 38.52 2.40
1273 1504 2.427410 CAAGCGCTTGCACGTTCC 60.427 61.111 34.84 0.00 42.66 3.62
1288 1519 3.202906 GACACAGGCTACTTGACAACAA 58.797 45.455 0.00 0.00 34.65 2.83
1289 1520 2.484770 GGACACAGGCTACTTGACAACA 60.485 50.000 0.00 0.00 0.00 3.33
1290 1521 2.143925 GGACACAGGCTACTTGACAAC 58.856 52.381 0.00 0.00 0.00 3.32
1434 1686 6.151144 CGGGAAAGGTGAAAGATCAAGTAAAT 59.849 38.462 0.00 0.00 37.30 1.40
1452 1704 1.069258 GATAGGCGGGTCGGGAAAG 59.931 63.158 0.00 0.00 0.00 2.62
1477 1729 1.139058 ACCACTCCCGTTGCATCTATC 59.861 52.381 0.00 0.00 0.00 2.08
1478 1730 1.204146 ACCACTCCCGTTGCATCTAT 58.796 50.000 0.00 0.00 0.00 1.98
1479 1731 0.981183 AACCACTCCCGTTGCATCTA 59.019 50.000 0.00 0.00 0.00 1.98
1480 1732 0.110486 AAACCACTCCCGTTGCATCT 59.890 50.000 0.00 0.00 0.00 2.90
1484 1736 1.534163 GTAGAAAACCACTCCCGTTGC 59.466 52.381 0.00 0.00 0.00 4.17
1510 1763 7.792374 AATGCACGCTATATGGGAATATAAG 57.208 36.000 0.00 0.00 0.00 1.73
1518 1771 3.623060 GTGGATAATGCACGCTATATGGG 59.377 47.826 0.00 0.00 0.00 4.00
1536 1789 3.532542 TGTACAACACATTCAACGTGGA 58.467 40.909 0.00 0.00 38.74 4.02
1537 1790 3.953874 TGTACAACACATTCAACGTGG 57.046 42.857 0.00 0.00 38.74 4.94
1674 1933 0.691078 TCGCCCTCTTAGCATCCCTT 60.691 55.000 0.00 0.00 0.00 3.95
1675 1934 0.472734 ATCGCCCTCTTAGCATCCCT 60.473 55.000 0.00 0.00 0.00 4.20
1691 1950 7.148507 GGAGTTTCTCATGCCAATAGATTATCG 60.149 40.741 0.00 0.00 31.08 2.92
1695 1954 5.759059 TGGAGTTTCTCATGCCAATAGATT 58.241 37.500 0.00 0.00 31.08 2.40
1696 1955 5.378230 TGGAGTTTCTCATGCCAATAGAT 57.622 39.130 0.00 0.00 31.08 1.98
1748 2007 9.985730 TCACTAATCATTGCTCATTTTCTTTTT 57.014 25.926 0.00 0.00 0.00 1.94
1753 2012 8.922058 AACATCACTAATCATTGCTCATTTTC 57.078 30.769 0.00 0.00 0.00 2.29
1759 2018 7.978982 ACAGTAAACATCACTAATCATTGCTC 58.021 34.615 0.00 0.00 0.00 4.26
1760 2019 7.928307 ACAGTAAACATCACTAATCATTGCT 57.072 32.000 0.00 0.00 0.00 3.91
1761 2020 8.454106 AGAACAGTAAACATCACTAATCATTGC 58.546 33.333 0.00 0.00 0.00 3.56
1800 2059 9.877178 TGTGGTACAAAAGAAAACAACATTAAT 57.123 25.926 0.00 0.00 44.16 1.40
1803 2062 8.037758 TGATGTGGTACAAAAGAAAACAACATT 58.962 29.630 0.00 0.00 44.16 2.71
1826 2085 7.870826 TCAAGTTCAAACACATTACGATTGAT 58.129 30.769 0.00 0.00 30.81 2.57
1832 2091 8.560576 AAATTCTCAAGTTCAAACACATTACG 57.439 30.769 0.00 0.00 0.00 3.18
1912 2171 7.872993 TGAAAACCATGTGAAAACAGTGTTTTA 59.127 29.630 29.09 17.15 37.37 1.52
1972 2241 9.766277 CTTGTAATGTTTTAATCTTGAGAGAGC 57.234 33.333 0.00 0.00 34.85 4.09
2002 2271 6.748333 TTCTTGTTTCAGGATGCATCTTAG 57.252 37.500 25.28 15.25 34.76 2.18
2197 2466 4.389687 TGTATAGCGTGCATGCATCTATTG 59.610 41.667 31.96 18.42 37.31 1.90
2198 2467 4.568956 TGTATAGCGTGCATGCATCTATT 58.431 39.130 31.96 22.27 37.31 1.73
2199 2468 4.179298 CTGTATAGCGTGCATGCATCTAT 58.821 43.478 30.69 30.69 37.31 1.98
2200 2469 3.578688 CTGTATAGCGTGCATGCATCTA 58.421 45.455 31.36 25.26 37.31 1.98
2201 2470 2.410939 CTGTATAGCGTGCATGCATCT 58.589 47.619 31.36 24.02 37.31 2.90
2202 2471 1.136141 GCTGTATAGCGTGCATGCATC 60.136 52.381 31.36 18.34 40.67 3.91
2203 2472 0.870393 GCTGTATAGCGTGCATGCAT 59.130 50.000 31.36 22.83 40.67 3.96
2204 2473 2.310309 GCTGTATAGCGTGCATGCA 58.690 52.632 31.36 18.46 40.67 3.96
2213 2482 6.039390 CCTTTCACAGGCATGCTGTATAGC 62.039 50.000 18.92 4.22 42.64 2.97
2214 2483 3.562973 CCTTTCACAGGCATGCTGTATAG 59.437 47.826 18.92 14.80 35.13 1.31
2215 2484 3.544684 CCTTTCACAGGCATGCTGTATA 58.455 45.455 18.92 8.62 35.13 1.47
2216 2485 2.372264 CCTTTCACAGGCATGCTGTAT 58.628 47.619 18.92 0.00 35.13 2.29
2217 2486 1.825090 CCTTTCACAGGCATGCTGTA 58.175 50.000 18.92 0.00 35.13 2.74
2218 2487 2.649831 CCTTTCACAGGCATGCTGT 58.350 52.632 18.92 16.33 35.13 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.