Multiple sequence alignment - TraesCS7B01G010500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G010500 chr7B 100.000 7628 0 0 1 7628 6746425 6754052 0.000000e+00 14087.0
1 TraesCS7B01G010500 chr7B 86.195 1724 199 17 3402 5095 35086913 35088627 0.000000e+00 1829.0
2 TraesCS7B01G010500 chr7B 90.948 232 21 0 420 651 592171406 592171637 5.750000e-81 313.0
3 TraesCS7B01G010500 chr7B 88.211 246 27 2 420 664 134806674 134806430 7.490000e-75 292.0
4 TraesCS7B01G010500 chr7B 79.325 237 47 2 7218 7453 728121696 728121461 1.700000e-36 165.0
5 TraesCS7B01G010500 chr7B 86.131 137 17 2 6477 6612 6924928 6924793 6.170000e-31 147.0
6 TraesCS7B01G010500 chr7A 88.458 2140 187 27 2608 4703 69216838 69218961 0.000000e+00 2529.0
7 TraesCS7B01G010500 chr7A 93.118 1424 66 16 654 2052 69214792 69216208 0.000000e+00 2058.0
8 TraesCS7B01G010500 chr7A 89.945 1283 90 19 5590 6859 69220003 69221259 0.000000e+00 1618.0
9 TraesCS7B01G010500 chr7A 87.473 910 88 13 4699 5592 69219023 69219922 0.000000e+00 1026.0
10 TraesCS7B01G010500 chr7A 94.414 555 27 3 2049 2602 69216237 69216788 0.000000e+00 850.0
11 TraesCS7B01G010500 chr7A 85.437 515 54 10 6344 6854 69524701 69525198 4.080000e-142 516.0
12 TraesCS7B01G010500 chr7A 85.311 354 31 8 1 347 69214455 69214794 5.670000e-91 346.0
13 TraesCS7B01G010500 chr7A 91.057 246 21 1 6207 6451 69361409 69361164 1.590000e-86 331.0
14 TraesCS7B01G010500 chr7A 88.618 246 26 2 420 663 206606991 206607236 1.610000e-76 298.0
15 TraesCS7B01G010500 chr6D 86.212 1922 215 18 3404 5281 424819683 424821598 0.000000e+00 2036.0
16 TraesCS7B01G010500 chr6D 85.752 1916 223 22 3410 5282 106030365 106028457 0.000000e+00 1980.0
17 TraesCS7B01G010500 chr6D 89.712 243 23 2 420 661 357008757 357008516 7.430000e-80 309.0
18 TraesCS7B01G010500 chr6D 89.121 239 24 2 420 656 454473403 454473165 5.790000e-76 296.0
19 TraesCS7B01G010500 chr6D 89.270 233 24 1 420 651 366395076 366394844 2.690000e-74 291.0
20 TraesCS7B01G010500 chr6D 87.967 241 27 2 420 659 273849633 273849394 4.510000e-72 283.0
21 TraesCS7B01G010500 chr2A 86.182 1925 212 22 3401 5281 101854856 101856770 0.000000e+00 2032.0
22 TraesCS7B01G010500 chr2A 86.108 1922 214 22 3404 5281 578390483 578392395 0.000000e+00 2021.0
23 TraesCS7B01G010500 chr2A 85.859 1089 112 14 3402 4454 515951639 515952721 0.000000e+00 1120.0
24 TraesCS7B01G010500 chr2A 83.279 305 40 9 359 659 765593536 765593833 3.510000e-68 270.0
25 TraesCS7B01G010500 chr6A 85.990 1920 217 17 3404 5281 462832908 462834817 0.000000e+00 2008.0
26 TraesCS7B01G010500 chr6A 85.945 1921 218 19 3403 5281 364083624 364081714 0.000000e+00 2004.0
27 TraesCS7B01G010500 chr6A 85.431 1915 223 25 3404 5273 189986304 189988207 0.000000e+00 1940.0
28 TraesCS7B01G010500 chr6A 88.211 246 27 2 420 663 349375390 349375145 7.490000e-75 292.0
29 TraesCS7B01G010500 chr6A 88.333 240 26 2 420 659 347590342 347590105 3.480000e-73 287.0
30 TraesCS7B01G010500 chr3A 85.863 1924 217 21 3404 5281 217717334 217719248 0.000000e+00 1995.0
31 TraesCS7B01G010500 chr3A 84.462 1905 223 27 3435 5281 122466110 122467999 0.000000e+00 1810.0
32 TraesCS7B01G010500 chr3A 82.742 423 57 8 4875 5283 353162266 353162686 5.630000e-96 363.0
33 TraesCS7B01G010500 chr3A 85.890 326 17 10 6864 7188 710083966 710084263 3.430000e-83 320.0
34 TraesCS7B01G010500 chr3A 89.300 243 24 2 420 661 630413257 630413016 3.460000e-78 303.0
35 TraesCS7B01G010500 chr3A 80.808 99 15 4 7322 7417 642128686 642128589 2.950000e-09 75.0
36 TraesCS7B01G010500 chr3A 92.683 41 1 2 291 330 533629335 533629374 2.970000e-04 58.4
37 TraesCS7B01G010500 chr7D 86.486 1813 209 13 3410 5191 198337396 198335589 0.000000e+00 1958.0
38 TraesCS7B01G010500 chr7D 92.047 1358 50 30 728 2052 64885014 64886346 0.000000e+00 1857.0
39 TraesCS7B01G010500 chr7D 89.393 1301 100 15 2608 3887 64886963 64888246 0.000000e+00 1604.0
40 TraesCS7B01G010500 chr7D 90.747 1178 75 14 5695 6855 64890337 64891497 0.000000e+00 1541.0
41 TraesCS7B01G010500 chr7D 94.964 556 26 1 2049 2604 64886374 64886927 0.000000e+00 870.0
42 TraesCS7B01G010500 chr7D 92.416 356 23 4 1 353 64884297 64884651 8.830000e-139 505.0
43 TraesCS7B01G010500 chr7D 80.882 612 72 20 6864 7452 321937555 321936966 2.530000e-119 440.0
44 TraesCS7B01G010500 chr7D 90.741 270 23 2 6137 6405 65058799 65059067 7.280000e-95 359.0
45 TraesCS7B01G010500 chr7D 90.129 233 22 1 420 651 7350055 7349823 1.240000e-77 302.0
46 TraesCS7B01G010500 chr7D 91.257 183 9 4 7453 7628 64892331 64892513 7.650000e-60 243.0
47 TraesCS7B01G010500 chr7D 91.379 58 5 0 5490 5547 64890271 64890328 6.350000e-11 80.5
48 TraesCS7B01G010500 chr1D 85.484 1922 219 26 3404 5281 114009695 114011600 0.000000e+00 1949.0
49 TraesCS7B01G010500 chr1D 84.785 1137 155 11 3404 4529 467242807 467243936 0.000000e+00 1125.0
50 TraesCS7B01G010500 chr1D 88.362 232 26 1 420 651 127319905 127320135 2.100000e-70 278.0
51 TraesCS7B01G010500 chr1D 87.764 237 28 1 420 655 243906226 243905990 7.540000e-70 276.0
52 TraesCS7B01G010500 chr2D 85.370 1907 214 32 3410 5268 331607114 331609003 0.000000e+00 1916.0
53 TraesCS7B01G010500 chr2D 86.070 1084 109 14 3407 4454 380416530 380417607 0.000000e+00 1127.0
54 TraesCS7B01G010500 chr2D 85.138 1090 120 19 3404 4460 388833659 388834739 0.000000e+00 1077.0
55 TraesCS7B01G010500 chr3D 84.836 1919 228 26 3410 5281 81687179 81685277 0.000000e+00 1873.0
56 TraesCS7B01G010500 chr3D 81.726 591 52 17 6864 7452 574745947 574746483 7.020000e-120 442.0
57 TraesCS7B01G010500 chr3D 83.838 297 37 9 359 651 486715834 486715545 9.750000e-69 272.0
58 TraesCS7B01G010500 chr4B 83.787 1505 189 24 3819 5282 159609628 159608138 0.000000e+00 1376.0
59 TraesCS7B01G010500 chr4B 89.270 233 23 2 420 651 581784896 581785127 2.690000e-74 291.0
60 TraesCS7B01G010500 chr4B 87.600 250 29 2 420 667 148911781 148911532 9.680000e-74 289.0
61 TraesCS7B01G010500 chr4B 79.630 162 18 8 5135 5283 237274079 237274238 1.350000e-17 102.0
62 TraesCS7B01G010500 chr2B 92.672 232 17 0 420 651 705206227 705206458 1.230000e-87 335.0
63 TraesCS7B01G010500 chr2B 88.618 246 24 4 420 662 797884 797640 5.790000e-76 296.0
64 TraesCS7B01G010500 chr2B 76.615 325 25 18 6897 7201 23011016 23011309 1.730000e-26 132.0
65 TraesCS7B01G010500 chr2B 82.759 145 18 2 7297 7440 151501053 151500915 1.040000e-23 122.0
66 TraesCS7B01G010500 chr6B 88.845 251 24 4 420 667 274058609 274058858 9.620000e-79 305.0
67 TraesCS7B01G010500 chr4A 89.344 244 25 1 420 662 324059499 324059742 9.620000e-79 305.0
68 TraesCS7B01G010500 chr4A 86.667 75 9 1 345 418 324059397 324059471 1.760000e-11 82.4
69 TraesCS7B01G010500 chr4D 88.843 242 24 3 420 660 501267911 501268150 2.080000e-75 294.0
70 TraesCS7B01G010500 chr4D 87.854 247 27 2 420 663 224494032 224493786 3.480000e-73 287.0
71 TraesCS7B01G010500 chr4D 88.412 233 26 1 420 651 463602879 463603111 5.830000e-71 279.0
72 TraesCS7B01G010500 chr4D 88.312 231 24 3 422 651 199201221 199200993 2.710000e-69 274.0
73 TraesCS7B01G010500 chr4D 87.712 236 27 2 420 654 404392912 404392678 2.710000e-69 274.0
74 TraesCS7B01G010500 chr1A 88.797 241 26 1 420 659 81477379 81477619 2.080000e-75 294.0
75 TraesCS7B01G010500 chrUn 88.608 237 26 1 420 655 363357827 363357591 3.480000e-73 287.0
76 TraesCS7B01G010500 chrUn 89.177 231 24 1 420 649 381701798 381702028 3.480000e-73 287.0
77 TraesCS7B01G010500 chrUn 89.177 231 24 1 420 649 381703552 381703782 3.480000e-73 287.0
78 TraesCS7B01G010500 chrUn 87.705 244 26 4 420 661 36697136 36696895 1.620000e-71 281.0
79 TraesCS7B01G010500 chrUn 87.705 244 26 4 420 661 299645093 299644852 1.620000e-71 281.0
80 TraesCS7B01G010500 chrUn 86.364 242 27 4 420 661 86889986 86890221 7.590000e-65 259.0
81 TraesCS7B01G010500 chrUn 86.364 242 27 4 420 661 281877222 281876987 7.590000e-65 259.0
82 TraesCS7B01G010500 chrUn 89.840 187 17 2 474 659 66400692 66400877 9.890000e-59 239.0
83 TraesCS7B01G010500 chrUn 85.345 232 31 3 420 650 88147701 88147472 3.560000e-58 237.0
84 TraesCS7B01G010500 chrUn 84.583 240 31 4 420 658 73413560 73413794 4.600000e-57 233.0
85 TraesCS7B01G010500 chr5D 87.600 250 28 3 420 667 65140668 65140420 3.480000e-73 287.0
86 TraesCS7B01G010500 chr5B 84.228 298 34 11 359 651 484351031 484351320 2.100000e-70 278.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G010500 chr7B 6746425 6754052 7627 False 14087.000000 14087 100.000000 1 7628 1 chr7B.!!$F1 7627
1 TraesCS7B01G010500 chr7B 35086913 35088627 1714 False 1829.000000 1829 86.195000 3402 5095 1 chr7B.!!$F2 1693
2 TraesCS7B01G010500 chr7A 69214455 69221259 6804 False 1404.500000 2529 89.786500 1 6859 6 chr7A.!!$F3 6858
3 TraesCS7B01G010500 chr6D 424819683 424821598 1915 False 2036.000000 2036 86.212000 3404 5281 1 chr6D.!!$F1 1877
4 TraesCS7B01G010500 chr6D 106028457 106030365 1908 True 1980.000000 1980 85.752000 3410 5282 1 chr6D.!!$R1 1872
5 TraesCS7B01G010500 chr2A 101854856 101856770 1914 False 2032.000000 2032 86.182000 3401 5281 1 chr2A.!!$F1 1880
6 TraesCS7B01G010500 chr2A 578390483 578392395 1912 False 2021.000000 2021 86.108000 3404 5281 1 chr2A.!!$F3 1877
7 TraesCS7B01G010500 chr2A 515951639 515952721 1082 False 1120.000000 1120 85.859000 3402 4454 1 chr2A.!!$F2 1052
8 TraesCS7B01G010500 chr6A 462832908 462834817 1909 False 2008.000000 2008 85.990000 3404 5281 1 chr6A.!!$F2 1877
9 TraesCS7B01G010500 chr6A 364081714 364083624 1910 True 2004.000000 2004 85.945000 3403 5281 1 chr6A.!!$R3 1878
10 TraesCS7B01G010500 chr6A 189986304 189988207 1903 False 1940.000000 1940 85.431000 3404 5273 1 chr6A.!!$F1 1869
11 TraesCS7B01G010500 chr3A 217717334 217719248 1914 False 1995.000000 1995 85.863000 3404 5281 1 chr3A.!!$F2 1877
12 TraesCS7B01G010500 chr3A 122466110 122467999 1889 False 1810.000000 1810 84.462000 3435 5281 1 chr3A.!!$F1 1846
13 TraesCS7B01G010500 chr7D 198335589 198337396 1807 True 1958.000000 1958 86.486000 3410 5191 1 chr7D.!!$R2 1781
14 TraesCS7B01G010500 chr7D 64884297 64892513 8216 False 957.214286 1857 91.743286 1 7628 7 chr7D.!!$F2 7627
15 TraesCS7B01G010500 chr7D 321936966 321937555 589 True 440.000000 440 80.882000 6864 7452 1 chr7D.!!$R3 588
16 TraesCS7B01G010500 chr1D 114009695 114011600 1905 False 1949.000000 1949 85.484000 3404 5281 1 chr1D.!!$F1 1877
17 TraesCS7B01G010500 chr1D 467242807 467243936 1129 False 1125.000000 1125 84.785000 3404 4529 1 chr1D.!!$F3 1125
18 TraesCS7B01G010500 chr2D 331607114 331609003 1889 False 1916.000000 1916 85.370000 3410 5268 1 chr2D.!!$F1 1858
19 TraesCS7B01G010500 chr2D 380416530 380417607 1077 False 1127.000000 1127 86.070000 3407 4454 1 chr2D.!!$F2 1047
20 TraesCS7B01G010500 chr2D 388833659 388834739 1080 False 1077.000000 1077 85.138000 3404 4460 1 chr2D.!!$F3 1056
21 TraesCS7B01G010500 chr3D 81685277 81687179 1902 True 1873.000000 1873 84.836000 3410 5281 1 chr3D.!!$R1 1871
22 TraesCS7B01G010500 chr3D 574745947 574746483 536 False 442.000000 442 81.726000 6864 7452 1 chr3D.!!$F1 588
23 TraesCS7B01G010500 chr4B 159608138 159609628 1490 True 1376.000000 1376 83.787000 3819 5282 1 chr4B.!!$R2 1463
24 TraesCS7B01G010500 chrUn 381701798 381703782 1984 False 287.000000 287 89.177000 420 649 2 chrUn.!!$F4 229

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
39 40 0.323725 GTCCATGGACCTGGTTGCAT 60.324 55.0 31.37 0.00 39.08 3.96 F
1589 1959 0.037303 ACAGGCAGGGAGACATTGTG 59.963 55.0 0.00 0.00 0.00 3.33 F
3504 3977 0.323633 TCATGGTTCTGGCATGTGGG 60.324 55.0 0.00 0.00 0.00 4.61 F
3972 5570 0.322366 TGGCGCAACTTCATCCATCA 60.322 50.0 10.83 0.00 0.00 3.07 F
4857 6855 0.323633 TGCACACCTCAATGGGGATG 60.324 55.0 5.97 4.87 43.63 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1647 2017 0.035056 GACCCACCATCCTTCACCAG 60.035 60.0 0.0 0.0 0.00 4.00 R
3512 3985 0.531090 CGGACAAGGTCACGTGGAAA 60.531 55.0 17.0 0.0 33.68 3.13 R
5191 7192 0.314302 AAGCGAGCTGTAAGTGACGT 59.686 50.0 0.0 0.0 35.30 4.34 R
5720 7947 0.178992 TGTGGCAGTCAAAGGAAGGG 60.179 55.0 0.0 0.0 0.00 3.95 R
6704 8942 0.741927 CCGGGGTATCAACAACGACC 60.742 60.0 0.0 0.0 0.00 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 0.962356 CAGTCCATGGACCTGGTTGC 60.962 60.000 36.09 13.44 45.59 4.17
39 40 0.323725 GTCCATGGACCTGGTTGCAT 60.324 55.000 31.37 0.00 39.08 3.96
91 94 7.512130 ACTGCCATGATTGATTATGAGTAGAA 58.488 34.615 0.00 0.00 0.00 2.10
247 254 9.891828 TGTATTCTTAGTGTTTGCAAAATAGTG 57.108 29.630 14.67 3.45 0.00 2.74
254 262 9.862371 TTAGTGTTTGCAAAATAGTGAAGAAAA 57.138 25.926 14.67 0.00 0.00 2.29
364 375 9.927668 ACAGTGATAAATAATGGGAAAACTTTG 57.072 29.630 0.00 0.00 0.00 2.77
365 376 9.927668 CAGTGATAAATAATGGGAAAACTTTGT 57.072 29.630 0.00 0.00 0.00 2.83
372 383 8.518430 AATAATGGGAAAACTTTGTTTTTGCT 57.482 26.923 9.36 0.00 37.08 3.91
373 384 6.435430 AATGGGAAAACTTTGTTTTTGCTC 57.565 33.333 9.36 0.22 37.08 4.26
374 385 5.159273 TGGGAAAACTTTGTTTTTGCTCT 57.841 34.783 9.36 0.00 37.08 4.09
375 386 5.175127 TGGGAAAACTTTGTTTTTGCTCTC 58.825 37.500 9.36 0.00 37.08 3.20
376 387 5.046663 TGGGAAAACTTTGTTTTTGCTCTCT 60.047 36.000 9.36 0.00 37.08 3.10
377 388 6.153680 TGGGAAAACTTTGTTTTTGCTCTCTA 59.846 34.615 9.36 0.00 37.08 2.43
378 389 6.697455 GGGAAAACTTTGTTTTTGCTCTCTAG 59.303 38.462 9.36 0.00 37.08 2.43
400 411 5.469373 GCTTTTGCCCACTTTAATTATGC 57.531 39.130 0.00 0.00 40.15 3.14
401 412 4.332543 GCTTTTGCCCACTTTAATTATGCC 59.667 41.667 0.00 0.00 40.15 4.40
402 413 5.486526 CTTTTGCCCACTTTAATTATGCCA 58.513 37.500 0.00 0.00 0.00 4.92
403 414 4.464069 TTGCCCACTTTAATTATGCCAC 57.536 40.909 0.00 0.00 0.00 5.01
404 415 2.425312 TGCCCACTTTAATTATGCCACG 59.575 45.455 0.00 0.00 0.00 4.94
405 416 2.425668 GCCCACTTTAATTATGCCACGT 59.574 45.455 0.00 0.00 0.00 4.49
406 417 3.119280 GCCCACTTTAATTATGCCACGTT 60.119 43.478 0.00 0.00 0.00 3.99
407 418 4.096682 GCCCACTTTAATTATGCCACGTTA 59.903 41.667 0.00 0.00 0.00 3.18
408 419 5.732247 GCCCACTTTAATTATGCCACGTTAG 60.732 44.000 0.00 0.00 0.00 2.34
409 420 5.587043 CCCACTTTAATTATGCCACGTTAGA 59.413 40.000 0.00 0.00 0.00 2.10
410 421 6.094325 CCCACTTTAATTATGCCACGTTAGAA 59.906 38.462 0.00 0.00 0.00 2.10
411 422 7.201785 CCCACTTTAATTATGCCACGTTAGAAT 60.202 37.037 0.00 0.00 0.00 2.40
412 423 8.188139 CCACTTTAATTATGCCACGTTAGAATT 58.812 33.333 0.00 0.00 0.00 2.17
413 424 9.567848 CACTTTAATTATGCCACGTTAGAATTT 57.432 29.630 0.00 0.00 0.00 1.82
414 425 9.567848 ACTTTAATTATGCCACGTTAGAATTTG 57.432 29.630 0.00 0.00 0.00 2.32
415 426 9.781834 CTTTAATTATGCCACGTTAGAATTTGA 57.218 29.630 0.00 0.00 0.00 2.69
416 427 9.562583 TTTAATTATGCCACGTTAGAATTTGAC 57.437 29.630 0.00 0.00 0.00 3.18
417 428 6.751514 ATTATGCCACGTTAGAATTTGACA 57.248 33.333 0.00 0.00 0.00 3.58
418 429 6.751514 TTATGCCACGTTAGAATTTGACAT 57.248 33.333 0.00 0.00 0.00 3.06
441 452 9.791820 ACATACAATACATCACAAATGTCATTG 57.208 29.630 0.00 13.07 33.89 2.82
466 477 7.861372 TGCATGGCAAAAACAATAATTTTTCAG 59.139 29.630 0.00 0.00 39.25 3.02
467 478 7.326547 GCATGGCAAAAACAATAATTTTTCAGG 59.673 33.333 0.00 0.00 39.25 3.86
479 490 8.566260 CAATAATTTTTCAGGTCATTTTTGCCA 58.434 29.630 0.00 0.00 0.00 4.92
490 501 6.151817 AGGTCATTTTTGCCACTCTTAGATTC 59.848 38.462 0.00 0.00 0.00 2.52
491 502 6.325596 GTCATTTTTGCCACTCTTAGATTCC 58.674 40.000 0.00 0.00 0.00 3.01
523 534 8.584157 TGTATCACAATTGCCACTCTAAAATTT 58.416 29.630 5.05 0.00 0.00 1.82
543 554 1.035923 TTGCTTTTGCCACGGAATGA 58.964 45.000 0.00 0.00 46.87 2.57
547 558 2.610232 GCTTTTGCCACGGAATGACAAT 60.610 45.455 0.00 0.00 40.15 2.71
554 565 3.376859 GCCACGGAATGACAATTGTGATA 59.623 43.478 17.58 2.38 0.00 2.15
555 566 4.142491 GCCACGGAATGACAATTGTGATAA 60.142 41.667 17.58 0.00 0.00 1.75
556 567 5.331902 CCACGGAATGACAATTGTGATAAC 58.668 41.667 17.58 10.69 0.00 1.89
565 577 9.467258 AATGACAATTGTGATAACTGTCAAAAG 57.533 29.630 17.58 0.00 46.74 2.27
575 587 6.650807 TGATAACTGTCAAAAGCTAAGAGTGG 59.349 38.462 0.00 0.00 0.00 4.00
585 597 4.026356 AGCTAAGAGTGGCAAAAGTGAT 57.974 40.909 0.00 0.00 32.62 3.06
598 610 8.243426 GTGGCAAAAGTGATATGTCAAATTCTA 58.757 33.333 0.00 0.00 35.80 2.10
605 617 9.757227 AAGTGATATGTCAAATTCTAGAGTAGC 57.243 33.333 0.00 0.00 35.80 3.58
625 637 7.547227 AGTAGCATAAGTAAAATGGGCAAAAG 58.453 34.615 0.00 0.00 0.00 2.27
626 638 5.733676 AGCATAAGTAAAATGGGCAAAAGG 58.266 37.500 0.00 0.00 0.00 3.11
634 646 3.806949 AATGGGCAAAAGGTAGAGTGA 57.193 42.857 0.00 0.00 0.00 3.41
649 661 7.892609 AGGTAGAGTGACAAAAACAAAGTTTT 58.107 30.769 2.26 2.26 0.00 2.43
650 662 8.027189 AGGTAGAGTGACAAAAACAAAGTTTTC 58.973 33.333 8.16 0.00 0.00 2.29
651 663 8.027189 GGTAGAGTGACAAAAACAAAGTTTTCT 58.973 33.333 8.16 1.73 0.00 2.52
652 664 9.062674 GTAGAGTGACAAAAACAAAGTTTTCTC 57.937 33.333 8.16 9.56 0.00 2.87
653 665 7.657336 AGAGTGACAAAAACAAAGTTTTCTCA 58.343 30.769 16.44 13.22 0.00 3.27
654 666 8.306761 AGAGTGACAAAAACAAAGTTTTCTCAT 58.693 29.630 16.44 8.85 31.11 2.90
655 667 9.567848 GAGTGACAAAAACAAAGTTTTCTCATA 57.432 29.630 8.16 0.00 31.11 2.15
656 668 9.921637 AGTGACAAAAACAAAGTTTTCTCATAA 57.078 25.926 8.16 0.00 31.11 1.90
687 699 3.639625 TTGGGGGAGTAAAATTTGGGT 57.360 42.857 0.00 0.00 0.00 4.51
728 740 4.527564 CAAAGCACTCTCTTTGTTTACCG 58.472 43.478 7.79 0.00 44.69 4.02
767 1083 6.441924 TCTTGGAGGTAGAAGAGATGTTCATT 59.558 38.462 0.00 0.00 0.00 2.57
835 1151 6.492254 ACAAGCTTTACGTTTTACCAGAAAG 58.508 36.000 0.00 0.00 0.00 2.62
902 1244 2.035626 ACTCGGGTTGCCCAATGG 59.964 61.111 4.96 0.00 45.83 3.16
925 1267 3.349006 GGCAGCTGGTCACACACG 61.349 66.667 17.12 0.00 0.00 4.49
926 1268 2.280119 GCAGCTGGTCACACACGA 60.280 61.111 17.12 0.00 0.00 4.35
927 1269 2.313172 GCAGCTGGTCACACACGAG 61.313 63.158 17.12 0.00 34.00 4.18
928 1270 1.363807 CAGCTGGTCACACACGAGA 59.636 57.895 5.57 0.00 32.59 4.04
929 1271 0.665670 CAGCTGGTCACACACGAGAG 60.666 60.000 5.57 0.00 32.59 3.20
930 1272 0.823769 AGCTGGTCACACACGAGAGA 60.824 55.000 0.00 0.00 32.59 3.10
931 1273 0.664767 GCTGGTCACACACGAGAGAC 60.665 60.000 0.00 0.00 32.59 3.36
932 1274 4.968197 GGTCACACACGAGAGACC 57.032 61.111 0.00 0.00 43.18 3.85
933 1275 1.289380 GGTCACACACGAGAGACCC 59.711 63.158 10.76 0.00 43.67 4.46
935 1277 1.153061 TCACACACGAGAGACCCCT 59.847 57.895 0.00 0.00 0.00 4.79
936 1278 1.179174 TCACACACGAGAGACCCCTG 61.179 60.000 0.00 0.00 0.00 4.45
938 1280 3.374402 ACACGAGAGACCCCTGCG 61.374 66.667 0.00 0.00 0.00 5.18
939 1281 4.135153 CACGAGAGACCCCTGCGG 62.135 72.222 0.00 0.00 37.81 5.69
974 1338 1.741770 CCGCAACTCTTTCCCTCCG 60.742 63.158 0.00 0.00 0.00 4.63
1317 1681 4.530857 GTCATGGACCTCGGCCGG 62.531 72.222 27.83 16.14 0.00 6.13
1371 1735 2.445845 CTCTCCCACCGCCCCATA 60.446 66.667 0.00 0.00 0.00 2.74
1425 1789 0.615331 TCAGGCTCATTCTGGACACC 59.385 55.000 0.00 0.00 33.36 4.16
1439 1803 1.413767 GACACCACGATACGCTGCTG 61.414 60.000 0.00 0.00 0.00 4.41
1448 1812 2.249413 ATACGCTGCTGCTCCTGCTT 62.249 55.000 14.03 0.00 40.48 3.91
1450 1814 2.046120 GCTGCTGCTCCTGCTTCT 60.046 61.111 8.53 0.00 40.48 2.85
1480 1844 5.882557 AGCATTATTGAACGAGTCCAATTCT 59.117 36.000 0.00 0.00 35.02 2.40
1484 1854 2.688507 TGAACGAGTCCAATTCTGCTC 58.311 47.619 0.00 0.00 0.00 4.26
1517 1887 0.701310 AGGTTGGGGACTTTGGAGGT 60.701 55.000 0.00 0.00 0.00 3.85
1529 1899 2.125512 GGAGGTGACAATCGCGCT 60.126 61.111 5.56 0.00 0.00 5.92
1589 1959 0.037303 ACAGGCAGGGAGACATTGTG 59.963 55.000 0.00 0.00 0.00 3.33
1647 2017 5.449725 GGAAGTGCTAATTTGCTTCAGGATC 60.450 44.000 12.99 2.72 39.10 3.36
1765 2135 6.456449 CCGGCAGTGATTTTACTACATTGTAC 60.456 42.308 0.00 0.00 0.00 2.90
1809 2190 4.202245 AGATACTTACACGTGTGGCAAT 57.798 40.909 30.83 17.96 34.19 3.56
1812 2193 1.001815 ACTTACACGTGTGGCAATTGC 60.002 47.619 30.83 22.47 41.14 3.56
1827 2208 5.927689 TGGCAATTGCAATTAGAAGAGTTTG 59.072 36.000 30.32 10.58 44.36 2.93
1829 2210 6.424812 GGCAATTGCAATTAGAAGAGTTTGTT 59.575 34.615 30.32 0.00 44.36 2.83
2055 2468 9.296400 GTTTGTTCTCTTAAGTTTGTTGCATTA 57.704 29.630 1.63 0.00 0.00 1.90
2154 2567 9.864034 GTTCGTTGGATGATTTTATACAGTATG 57.136 33.333 3.03 0.00 46.00 2.39
2202 2615 8.391859 CACACCGCTTACAATGTATGTTAAATA 58.608 33.333 7.89 0.00 43.63 1.40
2370 2783 5.755375 CGCTCATGGTGTAACAATAGAGAAT 59.245 40.000 0.00 0.00 39.98 2.40
2604 3029 7.819644 TGTTCGTGTAGCTTTAGAACATACTA 58.180 34.615 17.05 1.92 43.95 1.82
2605 3030 8.464404 TGTTCGTGTAGCTTTAGAACATACTAT 58.536 33.333 17.05 0.00 43.95 2.12
2606 3031 9.298774 GTTCGTGTAGCTTTAGAACATACTATT 57.701 33.333 14.79 0.00 40.41 1.73
2648 3105 7.014711 TCTGTTTCACCATGGTTGCTAATTTAA 59.985 33.333 16.84 0.00 0.00 1.52
2721 3178 1.279271 GAAGCAAGCAGGAGAAGGGTA 59.721 52.381 0.00 0.00 0.00 3.69
2760 3217 0.614812 GCAAGGGCCCATCAACATTT 59.385 50.000 27.56 3.12 0.00 2.32
2811 3268 2.159476 TGAGTTACGTGTCCATCGTAGC 60.159 50.000 0.00 0.00 43.01 3.58
2860 3317 2.614987 GCAGGTTCTCTCTGATTGTGCT 60.615 50.000 0.00 0.00 34.36 4.40
2898 3355 8.551205 ACATTATCACGTTACATTTGATGCTAG 58.449 33.333 0.00 0.00 32.24 3.42
2943 3405 4.139786 ACATGGAGTGATGCCATTATGAC 58.860 43.478 0.00 0.00 43.42 3.06
2998 3460 8.325421 TGCCTAATGTTGAAATTCGTAAGTTA 57.675 30.769 0.00 0.00 39.48 2.24
3057 3519 2.673368 AGAAGGATCAATTTCGTCGTGC 59.327 45.455 0.00 0.00 0.00 5.34
3081 3543 4.328983 TCCTTACGAAATTGCGTCTCAATC 59.671 41.667 16.43 0.00 44.23 2.67
3183 3645 2.093764 ACTCTAATGTGTCTGAGGCAGC 60.094 50.000 0.00 0.00 0.00 5.25
3240 3702 6.319658 TCTTCAATAGACCATTTCCTTGATGC 59.680 38.462 0.00 0.00 30.41 3.91
3246 3708 5.021458 AGACCATTTCCTTGATGCTCAATT 58.979 37.500 0.08 0.00 35.59 2.32
3284 3747 9.690434 GATCTTCATTAGTTCGTTTACATGTTC 57.310 33.333 2.30 0.00 0.00 3.18
3294 3757 8.126700 AGTTCGTTTACATGTTCAAGGTTTTAG 58.873 33.333 2.30 0.00 0.00 1.85
3301 3764 5.659079 ACATGTTCAAGGTTTTAGTTTGGGA 59.341 36.000 0.00 0.00 0.00 4.37
3307 3770 6.424883 TCAAGGTTTTAGTTTGGGAGTGTTA 58.575 36.000 0.00 0.00 0.00 2.41
3339 3802 3.363970 CGATGCTTATTTGGTATGGACGC 60.364 47.826 0.00 0.00 0.00 5.19
3376 3839 6.923508 GGCTGTATAATATCAAACTTTTGGGC 59.076 38.462 1.94 0.00 38.66 5.36
3395 3858 2.221055 GGCGTCTTTATGGAAGTATGCG 59.779 50.000 0.00 0.00 36.70 4.73
3475 3948 5.707066 AGAGCTGAAACCCATAAGATCTT 57.293 39.130 13.56 13.56 31.64 2.40
3504 3977 0.323633 TCATGGTTCTGGCATGTGGG 60.324 55.000 0.00 0.00 0.00 4.61
3512 3985 2.126882 TCTGGCATGTGGGTAGCTAAT 58.873 47.619 0.00 0.00 0.00 1.73
3537 4017 1.669440 GTGACCTTGTCCGTGGCTA 59.331 57.895 0.00 0.00 0.00 3.93
3538 4018 0.389948 GTGACCTTGTCCGTGGCTAG 60.390 60.000 0.00 0.00 0.00 3.42
3611 5143 0.474184 ATTTGATCTACCCGGGCCTG 59.526 55.000 24.08 11.37 0.00 4.85
3650 5182 1.935933 CTTTAACCGTCCGCTATGCT 58.064 50.000 0.00 0.00 0.00 3.79
3668 5200 1.331214 CTTTGGAGCTTTTGGAGGCA 58.669 50.000 0.00 0.00 0.00 4.75
3807 5339 3.879295 CCACACATCCATCTCAACATACC 59.121 47.826 0.00 0.00 0.00 2.73
3832 5364 2.936498 CTCCGCTACACCTAAATGTTGG 59.064 50.000 0.00 0.00 33.85 3.77
3833 5365 2.303600 TCCGCTACACCTAAATGTTGGT 59.696 45.455 0.00 0.00 36.96 3.67
3855 5390 5.116882 GTCATATCGCCTTTTAGTCCAACT 58.883 41.667 0.00 0.00 0.00 3.16
3857 5392 2.467566 TCGCCTTTTAGTCCAACTCC 57.532 50.000 0.00 0.00 0.00 3.85
3863 5398 3.072476 CCTTTTAGTCCAACTCCCAGTGA 59.928 47.826 0.00 0.00 0.00 3.41
3870 5405 2.567169 TCCAACTCCCAGTGACATACAG 59.433 50.000 0.00 0.00 0.00 2.74
3878 5413 2.488937 CCAGTGACATACAGCATTGCAA 59.511 45.455 11.91 0.00 0.00 4.08
3972 5570 0.322366 TGGCGCAACTTCATCCATCA 60.322 50.000 10.83 0.00 0.00 3.07
3988 5826 2.947652 CCATCAGGCTTTGATTCGATGT 59.052 45.455 7.64 0.00 44.14 3.06
4010 5848 8.834749 ATGTCTCACATCTTCATCAATATCAG 57.165 34.615 0.00 0.00 32.38 2.90
4015 5853 7.221450 TCACATCTTCATCAATATCAGCATCA 58.779 34.615 0.00 0.00 0.00 3.07
4041 5879 3.138098 TGCAGCATAGACCCCAAATATCA 59.862 43.478 0.00 0.00 0.00 2.15
4094 5938 3.937539 AGGCTAACCTCCTCTCCTC 57.062 57.895 0.00 0.00 46.34 3.71
4110 5960 2.428890 CTCCTCCTTGTGCCTAGTAGTG 59.571 54.545 0.00 0.00 0.00 2.74
4134 5984 0.601558 AACCGCACGTCATGTACTCT 59.398 50.000 0.00 0.00 0.00 3.24
4175 6065 8.306313 ACTCTAAAACCTTTTGATTCCAAAGT 57.694 30.769 8.83 0.00 42.55 2.66
4195 6085 7.174946 CCAAAGTTTTGTCTCCATAGCTCTAAA 59.825 37.037 0.00 0.00 36.45 1.85
4233 6123 3.067833 TCCGACTATCATCGACTAGCAG 58.932 50.000 0.00 0.00 45.13 4.24
4289 6179 8.875168 GGATATCTCCTTGTATATCCCTTATGG 58.125 40.741 2.05 0.00 44.42 2.74
4293 6183 5.922715 TCCTTGTATATCCCTTATGGCCTA 58.077 41.667 3.32 0.00 0.00 3.93
4294 6184 6.521297 TCCTTGTATATCCCTTATGGCCTAT 58.479 40.000 3.32 0.00 0.00 2.57
4297 6187 8.116026 CCTTGTATATCCCTTATGGCCTATTTT 58.884 37.037 3.32 0.00 0.00 1.82
4305 6219 6.960542 TCCCTTATGGCCTATTTTAACCAAAA 59.039 34.615 3.32 0.00 38.00 2.44
4345 6265 7.120726 CAGTCCTATTTTAACCGGAAAGTCATT 59.879 37.037 9.46 0.00 0.00 2.57
4350 6270 5.616488 TTTAACCGGAAAGTCATTAGTGC 57.384 39.130 9.46 0.00 0.00 4.40
4354 6274 1.448985 GGAAAGTCATTAGTGCCGCA 58.551 50.000 0.00 0.00 0.00 5.69
4464 6393 2.083167 CCACCACATGGCATTTTGTC 57.917 50.000 0.00 0.00 43.24 3.18
4475 6404 6.017109 ACATGGCATTTTGTCGTATCTTATCC 60.017 38.462 0.00 0.00 0.00 2.59
4501 6430 3.760684 GCCTTCTCCAAGTCAATGAACAT 59.239 43.478 0.00 0.00 0.00 2.71
4509 6438 6.124340 TCCAAGTCAATGAACATCATATGCT 58.876 36.000 0.00 0.00 35.76 3.79
4588 6518 1.754803 CATGGTCGACCTACTAGGCAA 59.245 52.381 33.39 11.97 39.63 4.52
4606 6536 5.359756 AGGCAAGAAACCAAACTGATTTTC 58.640 37.500 0.00 0.00 0.00 2.29
4609 6539 3.977427 AGAAACCAAACTGATTTTCGCC 58.023 40.909 0.00 0.00 33.92 5.54
4662 6593 5.190528 TCAATGACTCTCTCCCATAGCTTTT 59.809 40.000 0.00 0.00 0.00 2.27
4673 6604 5.076873 TCCCATAGCTTTTATTGTATGGCC 58.923 41.667 0.00 0.00 40.41 5.36
4778 6775 4.021719 CCATTCTTCTGGCATCTTGTTTGT 60.022 41.667 0.00 0.00 0.00 2.83
4825 6823 2.299993 TAGCCATGCTATCGCTATGC 57.700 50.000 0.00 0.00 40.44 3.14
4857 6855 0.323633 TGCACACCTCAATGGGGATG 60.324 55.000 5.97 4.87 43.63 3.51
4873 6871 1.152398 ATGCAATCAGGGCCCATCC 60.152 57.895 27.56 6.24 0.00 3.51
4891 6889 1.995542 TCCCCTTGCTTCCTTTCATCT 59.004 47.619 0.00 0.00 0.00 2.90
5111 7112 0.895530 TGGTTGACATCCCTCGTCTC 59.104 55.000 0.00 0.00 34.37 3.36
5139 7140 9.246670 CTCTCTCAGATCTTGACCATCTTATAT 57.753 37.037 0.00 0.00 0.00 0.86
5191 7192 6.146140 AGTGCTGATAGAGGTCCTCATATA 57.854 41.667 21.26 5.27 32.06 0.86
5199 7213 4.794334 AGAGGTCCTCATATACGTCACTT 58.206 43.478 21.26 0.00 33.92 3.16
5231 7246 0.668535 GCGACTTTCTTTGCCACCTT 59.331 50.000 0.00 0.00 0.00 3.50
5232 7247 1.600413 GCGACTTTCTTTGCCACCTTG 60.600 52.381 0.00 0.00 0.00 3.61
5233 7248 1.676006 CGACTTTCTTTGCCACCTTGT 59.324 47.619 0.00 0.00 0.00 3.16
5234 7249 2.875933 CGACTTTCTTTGCCACCTTGTA 59.124 45.455 0.00 0.00 0.00 2.41
5283 7298 2.368875 CCAGGTGTAGGTGTCTGAAACT 59.631 50.000 0.00 0.00 0.00 2.66
5308 7323 1.846007 ATGGTGAATTTGCGGCCTTA 58.154 45.000 0.00 0.00 0.00 2.69
5343 7358 6.833041 TGATAGTCCTAGTTTGGTTTGTTGA 58.167 36.000 0.00 0.00 0.00 3.18
5347 7362 5.823045 AGTCCTAGTTTGGTTTGTTGAGAAG 59.177 40.000 0.00 0.00 0.00 2.85
5354 7369 2.092429 TGGTTTGTTGAGAAGTGCTCCT 60.092 45.455 0.00 0.00 43.26 3.69
5355 7370 2.291741 GGTTTGTTGAGAAGTGCTCCTG 59.708 50.000 0.00 0.00 43.26 3.86
5356 7371 1.597742 TTGTTGAGAAGTGCTCCTGC 58.402 50.000 0.00 0.00 43.26 4.85
5389 7404 4.389077 GCTAGTGTGTGTGTGTCCTTAATC 59.611 45.833 0.00 0.00 0.00 1.75
5390 7405 4.415881 AGTGTGTGTGTGTCCTTAATCA 57.584 40.909 0.00 0.00 0.00 2.57
5391 7406 4.973168 AGTGTGTGTGTGTCCTTAATCAT 58.027 39.130 0.00 0.00 0.00 2.45
5394 7409 7.168219 AGTGTGTGTGTGTCCTTAATCATAAT 58.832 34.615 0.00 0.00 0.00 1.28
5395 7410 7.665559 AGTGTGTGTGTGTCCTTAATCATAATT 59.334 33.333 0.00 0.00 0.00 1.40
5396 7411 8.296713 GTGTGTGTGTGTCCTTAATCATAATTT 58.703 33.333 0.00 0.00 0.00 1.82
5397 7412 8.855110 TGTGTGTGTGTCCTTAATCATAATTTT 58.145 29.630 0.00 0.00 0.00 1.82
5398 7413 9.691362 GTGTGTGTGTCCTTAATCATAATTTTT 57.309 29.630 0.00 0.00 0.00 1.94
5424 7440 7.504924 TTGATAGTCCTAGTTTGGTTTGTTG 57.495 36.000 0.00 0.00 0.00 3.33
5428 7444 5.265989 AGTCCTAGTTTGGTTTGTTGGAAA 58.734 37.500 0.00 0.00 0.00 3.13
5435 7451 1.403679 TGGTTTGTTGGAAAGTGCTCG 59.596 47.619 0.00 0.00 0.00 5.03
5450 7466 1.364626 GCTCGTGCATGCTGCTAGTT 61.365 55.000 20.33 0.00 45.31 2.24
5477 7493 3.769819 GGGGGTGAGGGGCTAATT 58.230 61.111 0.00 0.00 0.00 1.40
5478 7494 1.537172 GGGGGTGAGGGGCTAATTC 59.463 63.158 0.00 0.00 0.00 2.17
5494 7636 5.179368 GGCTAATTCTGCCTTTTGGTTTTTC 59.821 40.000 13.32 0.00 46.38 2.29
5553 7695 5.999205 TTGCAGTAAATGGTCCATGAATT 57.001 34.783 4.74 0.00 0.00 2.17
5571 7713 8.863049 CCATGAATTTTGTTAGCTGTGAATTAC 58.137 33.333 0.00 0.00 0.00 1.89
5612 7837 9.554395 TTTGTAGAATTTTCAGTACTGACATGA 57.446 29.630 25.13 8.01 39.66 3.07
5658 7885 1.150536 TTGTTGGAAAGCGCTCCCT 59.849 52.632 23.73 8.15 34.22 4.20
5660 7887 1.302511 GTTGGAAAGCGCTCCCTCA 60.303 57.895 23.73 12.78 34.22 3.86
5674 7901 1.630369 TCCCTCATGCTGCTAGTTTGT 59.370 47.619 0.00 0.00 0.00 2.83
5682 7909 1.676006 GCTGCTAGTTTGTGTGTTGGT 59.324 47.619 0.00 0.00 0.00 3.67
5701 7928 2.224917 GGTGGTGAGGGGTTAATGTTGA 60.225 50.000 0.00 0.00 0.00 3.18
5736 7963 1.202940 ACTTCCCTTCCTTTGACTGCC 60.203 52.381 0.00 0.00 0.00 4.85
5745 7972 1.334869 CCTTTGACTGCCACAAGACAC 59.665 52.381 0.00 0.00 0.00 3.67
5754 7981 3.561143 TGCCACAAGACACTGGTAAATT 58.439 40.909 0.00 0.00 0.00 1.82
5756 7983 4.202101 TGCCACAAGACACTGGTAAATTTG 60.202 41.667 0.00 0.00 0.00 2.32
5757 7984 4.202111 GCCACAAGACACTGGTAAATTTGT 60.202 41.667 0.00 0.00 0.00 2.83
5758 7985 5.280945 CCACAAGACACTGGTAAATTTGTG 58.719 41.667 0.00 2.93 36.59 3.33
5759 7986 5.280945 CACAAGACACTGGTAAATTTGTGG 58.719 41.667 0.00 0.00 35.02 4.17
5760 7987 4.953579 ACAAGACACTGGTAAATTTGTGGT 59.046 37.500 0.00 0.00 35.02 4.16
5761 7988 6.038825 CACAAGACACTGGTAAATTTGTGGTA 59.961 38.462 0.00 0.00 35.02 3.25
5913 8140 1.140312 AACAACTGGAGCTGGAGGAA 58.860 50.000 0.00 0.00 0.00 3.36
6128 8356 4.859798 GTGACTCACTTTCCTTCATAGACG 59.140 45.833 1.58 0.00 0.00 4.18
6224 8452 7.278461 TGAAGATAAGGAGGAAGTAAGATCG 57.722 40.000 0.00 0.00 0.00 3.69
6227 8455 6.607019 AGATAAGGAGGAAGTAAGATCGTCT 58.393 40.000 0.00 0.00 33.40 4.18
6417 8646 3.309296 GACCATCATCTCCTCCCAAGTA 58.691 50.000 0.00 0.00 0.00 2.24
6432 8661 2.157085 CCAAGTAAACCTCGTCGAAAGC 59.843 50.000 0.00 0.00 0.00 3.51
6451 8680 2.091885 AGCTTCAACCTCAAGTGGGAAA 60.092 45.455 0.00 0.00 0.00 3.13
6460 8689 0.890683 CAAGTGGGAAATCACAGGCC 59.109 55.000 0.00 0.00 39.93 5.19
6483 8712 3.726517 CCAAACGCGTGCCTGAGG 61.727 66.667 14.98 4.92 0.00 3.86
6517 8746 1.885163 CGCGGACAGGGAAGTAGGTT 61.885 60.000 0.00 0.00 34.27 3.50
6519 8748 1.558233 CGGACAGGGAAGTAGGTTCT 58.442 55.000 0.00 0.00 35.25 3.01
6520 8749 1.204941 CGGACAGGGAAGTAGGTTCTG 59.795 57.143 0.00 0.00 35.25 3.02
6535 8773 1.188219 TTCTGCCTCGGAGCAAGAGT 61.188 55.000 0.00 0.00 43.52 3.24
6588 8826 2.562738 CTCCGATGGCATGGACTATACA 59.437 50.000 11.37 0.00 0.00 2.29
6594 8832 2.103094 TGGCATGGACTATACACAGAGC 59.897 50.000 0.00 0.00 0.00 4.09
6597 8835 0.744874 TGGACTATACACAGAGCGGC 59.255 55.000 0.00 0.00 0.00 6.53
6601 8839 0.657659 CTATACACAGAGCGGCGTCG 60.658 60.000 4.29 4.29 39.81 5.12
6632 8870 0.759436 TTCCTCCCGGAGTAGCATCC 60.759 60.000 13.62 0.00 41.25 3.51
6635 8873 2.093537 CTCCCGGAGTAGCATCCTGC 62.094 65.000 0.73 0.00 45.46 4.85
6636 8874 2.423446 CCGGAGTAGCATCCTGCC 59.577 66.667 0.00 0.00 46.52 4.85
6640 8878 1.395826 GGAGTAGCATCCTGCCGAGT 61.396 60.000 0.00 0.00 46.52 4.18
6643 8881 0.461961 GTAGCATCCTGCCGAGTTCT 59.538 55.000 0.00 0.00 46.52 3.01
6646 8884 0.729690 GCATCCTGCCGAGTTCTTTC 59.270 55.000 0.00 0.00 37.42 2.62
6652 8890 0.944311 TGCCGAGTTCTTTCGCTGTC 60.944 55.000 0.00 0.00 39.19 3.51
6653 8891 0.667792 GCCGAGTTCTTTCGCTGTCT 60.668 55.000 0.00 0.00 39.19 3.41
6654 8892 1.063806 CCGAGTTCTTTCGCTGTCTG 58.936 55.000 0.00 0.00 39.19 3.51
6655 8893 1.603172 CCGAGTTCTTTCGCTGTCTGT 60.603 52.381 0.00 0.00 39.19 3.41
6656 8894 1.453524 CGAGTTCTTTCGCTGTCTGTG 59.546 52.381 0.00 0.00 33.39 3.66
6657 8895 2.474816 GAGTTCTTTCGCTGTCTGTGT 58.525 47.619 0.00 0.00 0.00 3.72
6666 8904 1.401670 CGCTGTCTGTGTCTCTGTACC 60.402 57.143 0.00 0.00 0.00 3.34
6670 8908 4.580868 CTGTCTGTGTCTCTGTACCTAGA 58.419 47.826 0.00 0.00 0.00 2.43
6701 8939 2.507339 TTCCTTTCTTTTTGCAGCCG 57.493 45.000 0.00 0.00 0.00 5.52
6704 8942 1.860326 CCTTTCTTTTTGCAGCCGTTG 59.140 47.619 0.00 0.00 0.00 4.10
6744 8996 5.126384 CCGGTAATTCTCTCTCTCTCAACTT 59.874 44.000 0.00 0.00 0.00 2.66
6807 9059 2.283145 AGTGCTGCTTTCCAACTCAT 57.717 45.000 0.00 0.00 0.00 2.90
6820 9072 5.408880 TCCAACTCATACCGAACATAACA 57.591 39.130 0.00 0.00 0.00 2.41
6828 9080 1.865865 CCGAACATAACAGGATCGGG 58.134 55.000 4.67 0.00 46.97 5.14
6840 9092 0.461961 GGATCGGGTCCAACTCAGAG 59.538 60.000 1.41 0.00 46.96 3.35
6867 9119 2.695359 GACAACGTTTGGCAGGAGATA 58.305 47.619 0.00 0.00 38.99 1.98
6941 9303 2.185350 CAGCGGATCCTGCGTCTT 59.815 61.111 18.56 3.43 37.44 3.01
6958 9320 3.255423 TTCCCCGCAATACGCCACA 62.255 57.895 0.00 0.00 41.76 4.17
6961 9323 2.625906 CCGCAATACGCCACATCG 59.374 61.111 0.00 0.00 41.76 3.84
6966 9328 1.258982 GCAATACGCCACATCGAAGAG 59.741 52.381 0.00 0.00 34.76 2.85
6979 9341 0.730834 CGAAGAGACCAGTGACGCAG 60.731 60.000 0.00 0.00 0.00 5.18
6980 9342 1.005630 AAGAGACCAGTGACGCAGC 60.006 57.895 0.00 0.00 0.00 5.25
6981 9343 1.748329 AAGAGACCAGTGACGCAGCA 61.748 55.000 0.00 0.00 0.00 4.41
6982 9344 2.024319 GAGACCAGTGACGCAGCAC 61.024 63.158 0.00 0.00 39.05 4.40
7009 9371 2.743718 CTTGCCGGTGTGAGGACT 59.256 61.111 1.90 0.00 0.00 3.85
7013 9375 2.973899 CCGGTGTGAGGACTGAGG 59.026 66.667 0.00 0.00 0.00 3.86
7014 9376 1.606601 CCGGTGTGAGGACTGAGGA 60.607 63.158 0.00 0.00 0.00 3.71
7016 9378 1.587054 GGTGTGAGGACTGAGGACG 59.413 63.158 0.00 0.00 0.00 4.79
7018 9380 0.894184 GTGTGAGGACTGAGGACGGA 60.894 60.000 0.00 0.00 0.00 4.69
7019 9381 0.609406 TGTGAGGACTGAGGACGGAG 60.609 60.000 0.00 0.00 0.00 4.63
7025 9387 0.109039 GACTGAGGACGGAGTTCAGC 60.109 60.000 7.96 0.00 46.10 4.26
7026 9388 1.867919 ACTGAGGACGGAGTTCAGCG 61.868 60.000 7.96 0.00 46.10 5.18
7055 9437 3.129113 GGACTTGCATGCATATGTGTTGA 59.871 43.478 23.37 1.46 36.65 3.18
7067 9449 1.668151 GTGTTGAGCCTCGTGACCC 60.668 63.158 0.00 0.00 0.00 4.46
7068 9450 2.047179 GTTGAGCCTCGTGACCCC 60.047 66.667 0.00 0.00 0.00 4.95
7069 9451 3.691342 TTGAGCCTCGTGACCCCG 61.691 66.667 0.00 0.00 0.00 5.73
7153 9535 4.583254 CTCTCGTCGGCTCGCGAG 62.583 72.222 31.37 31.37 46.13 5.03
7204 9587 1.411246 CCTACAAGTGTAGCGCCCATA 59.589 52.381 2.29 0.00 44.97 2.74
7205 9588 2.470821 CTACAAGTGTAGCGCCCATAC 58.529 52.381 2.29 0.06 41.15 2.39
7256 9742 2.680312 AGCTCTCATGCGTTACACAT 57.320 45.000 0.00 0.00 38.13 3.21
7270 9756 5.508224 GCGTTACACATTGACTTAGCAATTC 59.492 40.000 0.00 0.00 36.39 2.17
7276 9762 6.148480 ACACATTGACTTAGCAATTCTCAGAC 59.852 38.462 0.00 0.00 36.39 3.51
7278 9764 6.148480 ACATTGACTTAGCAATTCTCAGACAC 59.852 38.462 0.00 0.00 36.39 3.67
7283 9769 5.698545 ACTTAGCAATTCTCAGACACTTCAC 59.301 40.000 0.00 0.00 0.00 3.18
7292 9778 1.007734 GACACTTCACGGAGCGACA 60.008 57.895 0.00 0.00 0.00 4.35
7295 9781 0.240145 CACTTCACGGAGCGACACTA 59.760 55.000 0.00 0.00 0.00 2.74
7303 9789 0.097325 GGAGCGACACTAGTCAGACG 59.903 60.000 0.00 0.00 45.23 4.18
7343 9830 1.362768 CGCTGCATGTGTAGTGTGAT 58.637 50.000 0.00 0.00 34.31 3.06
7345 9832 2.079158 GCTGCATGTGTAGTGTGATGT 58.921 47.619 0.00 0.00 0.00 3.06
7365 9852 4.530857 GGCTGTCGGGCGCTACAT 62.531 66.667 7.64 0.00 0.00 2.29
7440 9927 7.795482 TCTTTTCGTTCAGAGGTCAAATTTA 57.205 32.000 0.00 0.00 0.00 1.40
7458 10214 1.860676 TATCGTCTTTGCCGCCATAC 58.139 50.000 0.00 0.00 0.00 2.39
7468 10224 1.486310 TGCCGCCATACTCATTCTCTT 59.514 47.619 0.00 0.00 0.00 2.85
7476 10232 5.412594 GCCATACTCATTCTCTTTTGTGTCA 59.587 40.000 0.00 0.00 0.00 3.58
7524 10280 0.807496 GCAGTTCTGCACATCTTCCC 59.193 55.000 18.26 0.00 34.41 3.97
7525 10281 1.457346 CAGTTCTGCACATCTTCCCC 58.543 55.000 0.00 0.00 0.00 4.81
7559 10316 5.066505 CACTATTTCCATTTTCTTCTCCGGG 59.933 44.000 0.00 0.00 0.00 5.73
7612 10375 0.381089 CGCTCTACCTGTACCTTCCG 59.619 60.000 0.00 0.00 0.00 4.30
7615 10378 2.444421 CTCTACCTGTACCTTCCGTGT 58.556 52.381 0.00 0.00 0.00 4.49
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 50 5.245531 TGGCAGTATAAAGAACACCAGAAG 58.754 41.667 0.00 0.00 0.00 2.85
52 55 5.185454 TCATGGCAGTATAAAGAACACCAG 58.815 41.667 0.00 0.00 31.40 4.00
224 231 9.683069 CTTCACTATTTTGCAAACACTAAGAAT 57.317 29.630 12.39 2.63 0.00 2.40
247 254 1.266718 TCACCGCACATGCTTTTCTTC 59.733 47.619 1.82 0.00 39.32 2.87
254 262 2.401583 TTTAGATCACCGCACATGCT 57.598 45.000 1.82 0.00 39.32 3.79
277 286 4.866508 AATATGCATTGAAGGGAGCATG 57.133 40.909 3.54 0.00 46.24 4.06
338 349 9.927668 CAAAGTTTTCCCATTATTTATCACTGT 57.072 29.630 0.00 0.00 0.00 3.55
353 364 5.419542 AGAGAGCAAAAACAAAGTTTTCCC 58.580 37.500 8.16 3.56 0.00 3.97
354 365 7.685532 CTAGAGAGCAAAAACAAAGTTTTCC 57.314 36.000 8.16 3.86 0.00 3.13
371 382 2.777832 AGTGGGCAAAAGCTAGAGAG 57.222 50.000 0.00 0.00 0.00 3.20
372 383 3.508845 AAAGTGGGCAAAAGCTAGAGA 57.491 42.857 0.00 0.00 0.00 3.10
373 384 5.904362 ATTAAAGTGGGCAAAAGCTAGAG 57.096 39.130 0.00 0.00 0.00 2.43
374 385 7.630513 GCATAATTAAAGTGGGCAAAAGCTAGA 60.631 37.037 0.00 0.00 0.00 2.43
375 386 6.476706 GCATAATTAAAGTGGGCAAAAGCTAG 59.523 38.462 0.00 0.00 0.00 3.42
376 387 6.337356 GCATAATTAAAGTGGGCAAAAGCTA 58.663 36.000 0.00 0.00 0.00 3.32
377 388 5.178061 GCATAATTAAAGTGGGCAAAAGCT 58.822 37.500 0.00 0.00 0.00 3.74
378 389 4.332543 GGCATAATTAAAGTGGGCAAAAGC 59.667 41.667 0.00 0.00 0.00 3.51
379 390 5.351189 GTGGCATAATTAAAGTGGGCAAAAG 59.649 40.000 0.00 0.00 32.49 2.27
380 391 5.241662 GTGGCATAATTAAAGTGGGCAAAA 58.758 37.500 0.00 0.00 32.49 2.44
381 392 4.619394 CGTGGCATAATTAAAGTGGGCAAA 60.619 41.667 0.00 0.00 32.49 3.68
382 393 3.119316 CGTGGCATAATTAAAGTGGGCAA 60.119 43.478 0.00 0.00 32.49 4.52
383 394 2.425312 CGTGGCATAATTAAAGTGGGCA 59.575 45.455 0.00 0.00 0.00 5.36
384 395 2.425668 ACGTGGCATAATTAAAGTGGGC 59.574 45.455 0.00 0.00 0.00 5.36
385 396 4.712122 AACGTGGCATAATTAAAGTGGG 57.288 40.909 0.00 0.00 0.00 4.61
386 397 6.671614 TCTAACGTGGCATAATTAAAGTGG 57.328 37.500 0.00 0.00 0.00 4.00
387 398 9.567848 AAATTCTAACGTGGCATAATTAAAGTG 57.432 29.630 0.00 0.00 0.00 3.16
388 399 9.567848 CAAATTCTAACGTGGCATAATTAAAGT 57.432 29.630 0.00 0.00 0.00 2.66
389 400 9.781834 TCAAATTCTAACGTGGCATAATTAAAG 57.218 29.630 0.00 0.00 0.00 1.85
390 401 9.562583 GTCAAATTCTAACGTGGCATAATTAAA 57.437 29.630 0.00 0.00 0.00 1.52
391 402 8.731605 TGTCAAATTCTAACGTGGCATAATTAA 58.268 29.630 0.00 0.00 0.00 1.40
392 403 8.270080 TGTCAAATTCTAACGTGGCATAATTA 57.730 30.769 0.00 0.00 0.00 1.40
393 404 7.151999 TGTCAAATTCTAACGTGGCATAATT 57.848 32.000 0.00 0.00 0.00 1.40
394 405 6.751514 TGTCAAATTCTAACGTGGCATAAT 57.248 33.333 0.00 0.00 0.00 1.28
395 406 6.751514 ATGTCAAATTCTAACGTGGCATAA 57.248 33.333 0.00 0.00 34.66 1.90
396 407 6.819146 TGTATGTCAAATTCTAACGTGGCATA 59.181 34.615 0.00 0.00 37.49 3.14
397 408 5.645929 TGTATGTCAAATTCTAACGTGGCAT 59.354 36.000 0.00 0.00 39.51 4.40
398 409 4.998033 TGTATGTCAAATTCTAACGTGGCA 59.002 37.500 0.00 0.00 0.00 4.92
399 410 5.539582 TGTATGTCAAATTCTAACGTGGC 57.460 39.130 0.00 0.00 0.00 5.01
400 411 8.661257 TGTATTGTATGTCAAATTCTAACGTGG 58.339 33.333 0.00 0.00 39.62 4.94
411 422 9.838975 GACATTTGTGATGTATTGTATGTCAAA 57.161 29.630 0.00 0.00 40.01 2.69
412 423 9.007901 TGACATTTGTGATGTATTGTATGTCAA 57.992 29.630 10.98 0.00 44.25 3.18
413 424 8.558973 TGACATTTGTGATGTATTGTATGTCA 57.441 30.769 0.00 0.00 44.71 3.58
415 426 9.791820 CAATGACATTTGTGATGTATTGTATGT 57.208 29.630 0.00 0.00 31.52 2.29
416 427 8.748582 GCAATGACATTTGTGATGTATTGTATG 58.251 33.333 0.00 0.00 32.34 2.39
417 428 8.468399 TGCAATGACATTTGTGATGTATTGTAT 58.532 29.630 0.00 0.00 32.34 2.29
418 429 7.824672 TGCAATGACATTTGTGATGTATTGTA 58.175 30.769 0.00 11.31 32.34 2.41
441 452 7.326547 CCTGAAAAATTATTGTTTTTGCCATGC 59.673 33.333 2.46 0.00 40.35 4.06
459 470 5.096443 AGTGGCAAAAATGACCTGAAAAA 57.904 34.783 0.00 0.00 0.00 1.94
466 477 5.904362 ATCTAAGAGTGGCAAAAATGACC 57.096 39.130 0.00 0.00 0.00 4.02
467 478 6.325596 GGAATCTAAGAGTGGCAAAAATGAC 58.674 40.000 0.00 0.00 0.00 3.06
479 490 7.147897 TGTGATACATTGTCGGAATCTAAGAGT 60.148 37.037 0.00 0.00 0.00 3.24
490 501 3.128415 TGGCAATTGTGATACATTGTCGG 59.872 43.478 7.40 0.00 29.87 4.79
491 502 4.097714 GTGGCAATTGTGATACATTGTCG 58.902 43.478 7.40 0.00 29.87 4.35
523 534 1.410517 TCATTCCGTGGCAAAAGCAAA 59.589 42.857 0.00 0.00 0.00 3.68
543 554 7.042797 AGCTTTTGACAGTTATCACAATTGT 57.957 32.000 4.92 4.92 0.00 2.71
547 558 7.715249 ACTCTTAGCTTTTGACAGTTATCACAA 59.285 33.333 0.00 0.00 0.00 3.33
554 565 3.565902 GCCACTCTTAGCTTTTGACAGTT 59.434 43.478 0.00 0.00 0.00 3.16
555 566 3.142174 GCCACTCTTAGCTTTTGACAGT 58.858 45.455 0.00 0.00 0.00 3.55
556 567 3.141398 TGCCACTCTTAGCTTTTGACAG 58.859 45.455 0.00 0.00 0.00 3.51
565 577 5.355350 ACATATCACTTTTGCCACTCTTAGC 59.645 40.000 0.00 0.00 0.00 3.09
575 587 9.713740 CTCTAGAATTTGACATATCACTTTTGC 57.286 33.333 0.00 0.00 33.38 3.68
598 610 6.001449 TGCCCATTTTACTTATGCTACTCT 57.999 37.500 0.00 0.00 0.00 3.24
603 615 5.248248 ACCTTTTGCCCATTTTACTTATGCT 59.752 36.000 0.00 0.00 0.00 3.79
605 617 8.062065 TCTACCTTTTGCCCATTTTACTTATG 57.938 34.615 0.00 0.00 0.00 1.90
615 627 2.375174 TGTCACTCTACCTTTTGCCCAT 59.625 45.455 0.00 0.00 0.00 4.00
619 631 5.646606 TGTTTTTGTCACTCTACCTTTTGC 58.353 37.500 0.00 0.00 0.00 3.68
625 637 8.027189 AGAAAACTTTGTTTTTGTCACTCTACC 58.973 33.333 9.36 0.00 0.00 3.18
626 638 8.965986 AGAAAACTTTGTTTTTGTCACTCTAC 57.034 30.769 9.36 0.00 0.00 2.59
649 661 9.586732 CTCCCCCAATTTGTATTATTTATGAGA 57.413 33.333 0.00 0.00 0.00 3.27
650 662 9.367160 ACTCCCCCAATTTGTATTATTTATGAG 57.633 33.333 0.00 0.00 0.00 2.90
659 671 8.106462 CCAAATTTTACTCCCCCAATTTGTATT 58.894 33.333 12.73 0.00 41.77 1.89
660 672 7.311612 CCCAAATTTTACTCCCCCAATTTGTAT 60.312 37.037 12.73 0.00 41.77 2.29
661 673 6.013293 CCCAAATTTTACTCCCCCAATTTGTA 60.013 38.462 12.73 0.00 41.77 2.41
662 674 5.222027 CCCAAATTTTACTCCCCCAATTTGT 60.222 40.000 12.73 0.00 41.77 2.83
663 675 5.222027 ACCCAAATTTTACTCCCCCAATTTG 60.222 40.000 8.57 8.57 42.47 2.32
664 676 4.917040 ACCCAAATTTTACTCCCCCAATTT 59.083 37.500 0.00 0.00 30.56 1.82
665 677 4.288366 CACCCAAATTTTACTCCCCCAATT 59.712 41.667 0.00 0.00 0.00 2.32
666 678 3.843619 CACCCAAATTTTACTCCCCCAAT 59.156 43.478 0.00 0.00 0.00 3.16
667 679 3.116707 TCACCCAAATTTTACTCCCCCAA 60.117 43.478 0.00 0.00 0.00 4.12
668 680 2.451273 TCACCCAAATTTTACTCCCCCA 59.549 45.455 0.00 0.00 0.00 4.96
670 682 4.349365 TGATCACCCAAATTTTACTCCCC 58.651 43.478 0.00 0.00 0.00 4.81
683 695 2.978156 AGCCTTTCTTTGATCACCCA 57.022 45.000 0.00 0.00 0.00 4.51
687 699 5.846203 CTTTGGAAAGCCTTTCTTTGATCA 58.154 37.500 16.28 2.70 44.58 2.92
738 750 6.468543 ACATCTCTTCTACCTCCAAGAAAAC 58.531 40.000 0.00 0.00 32.77 2.43
747 1063 9.995003 ATGAATAATGAACATCTCTTCTACCTC 57.005 33.333 0.00 0.00 0.00 3.85
767 1083 7.532546 CGTAAAGCTTGTTTTCGACAATGAATA 59.467 33.333 0.00 0.00 46.58 1.75
835 1151 4.265073 GGTCAAGATCCCATGGCATATAC 58.735 47.826 6.09 0.00 0.00 1.47
938 1280 4.839706 AATGCGGATGGGTGGGCC 62.840 66.667 0.00 0.00 0.00 5.80
939 1281 3.219198 GAATGCGGATGGGTGGGC 61.219 66.667 0.00 0.00 0.00 5.36
941 1283 2.901840 CGGAATGCGGATGGGTGG 60.902 66.667 0.00 0.00 0.00 4.61
942 1284 3.585990 GCGGAATGCGGATGGGTG 61.586 66.667 0.00 0.00 0.00 4.61
953 1295 1.340114 GGAGGGAAAGAGTTGCGGAAT 60.340 52.381 0.00 0.00 0.00 3.01
954 1296 0.036306 GGAGGGAAAGAGTTGCGGAA 59.964 55.000 0.00 0.00 0.00 4.30
1371 1735 2.772691 GCGGAGGTCGTCGAAGGAT 61.773 63.158 0.00 0.00 41.72 3.24
1453 1817 2.939103 GGACTCGTTCAATAATGCTGCT 59.061 45.455 0.00 0.00 0.00 4.24
1464 1828 2.037121 TGAGCAGAATTGGACTCGTTCA 59.963 45.455 0.00 0.00 31.64 3.18
1465 1829 2.688507 TGAGCAGAATTGGACTCGTTC 58.311 47.619 0.00 0.00 31.64 3.95
1480 1844 1.065199 CCTACCAAAGGCAGATGAGCA 60.065 52.381 0.00 0.00 38.97 4.26
1517 1887 0.176910 TAATCCCAGCGCGATTGTCA 59.823 50.000 12.10 0.00 32.32 3.58
1647 2017 0.035056 GACCCACCATCCTTCACCAG 60.035 60.000 0.00 0.00 0.00 4.00
1765 2135 8.678593 TCTATCACTATTCACCAGTACACTAG 57.321 38.462 0.00 0.00 0.00 2.57
1809 2190 5.752955 GGCAAACAAACTCTTCTAATTGCAA 59.247 36.000 0.00 0.00 42.63 4.08
1812 2193 6.507023 ACTGGCAAACAAACTCTTCTAATTG 58.493 36.000 0.00 0.00 0.00 2.32
1827 2208 6.530181 GCTAAAATTGGTACATACTGGCAAAC 59.470 38.462 0.00 0.00 39.30 2.93
1829 2210 5.712446 TGCTAAAATTGGTACATACTGGCAA 59.288 36.000 0.00 0.00 39.30 4.52
2101 2514 7.276658 TGACCAAAACAAGTAGTAACATCTGA 58.723 34.615 0.00 0.00 0.00 3.27
2121 2534 2.920724 TCATCCAACGAACTTGACCA 57.079 45.000 0.00 0.00 30.42 4.02
2122 2535 4.766404 AAATCATCCAACGAACTTGACC 57.234 40.909 0.00 0.00 30.42 4.02
2131 2544 8.601845 TCCATACTGTATAAAATCATCCAACG 57.398 34.615 0.00 0.00 0.00 4.10
2202 2615 6.014327 ACACCTGATTGGCATTAAAGAAACAT 60.014 34.615 0.00 0.00 40.22 2.71
2218 2631 4.940046 CACAGCTTCTATCAACACCTGATT 59.060 41.667 0.00 0.00 42.46 2.57
2458 2871 4.249661 TGCTGCAGTGTGAAAATACGATA 58.750 39.130 16.64 0.00 0.00 2.92
2648 3105 4.597004 ACAATGGAGCAGAGACAATGATT 58.403 39.130 0.00 0.00 0.00 2.57
2730 3187 3.019003 GCCCTTGCGCTCTAGGACA 62.019 63.158 20.56 0.00 37.39 4.02
2760 3217 3.319122 ACACGATCTCTACAGCATATGCA 59.681 43.478 28.62 8.23 45.16 3.96
2811 3268 2.697751 AGCATCTACTGTAGCTTCCAGG 59.302 50.000 9.98 0.00 32.52 4.45
2926 3385 7.976135 AAATCTAGTCATAATGGCATCACTC 57.024 36.000 0.00 0.00 0.00 3.51
2943 3405 5.463061 CCTGCACCAACAAAACAAAATCTAG 59.537 40.000 0.00 0.00 0.00 2.43
3057 3519 3.250744 TGAGACGCAATTTCGTAAGGAG 58.749 45.455 2.39 0.00 43.42 3.69
3081 3543 6.072508 TGCATTACTTAAGGAAGCAACTTCAG 60.073 38.462 17.16 1.18 41.77 3.02
3183 3645 5.222007 ACCCCATAAGCATAGAGATTGAAGG 60.222 44.000 0.00 0.00 0.00 3.46
3266 3729 7.556733 AACCTTGAACATGTAAACGAACTAA 57.443 32.000 0.00 0.00 0.00 2.24
3284 3747 5.592104 AACACTCCCAAACTAAAACCTTG 57.408 39.130 0.00 0.00 0.00 3.61
3307 3770 6.919721 ACCAAATAAGCATCGTGTTAACAAT 58.080 32.000 10.51 0.00 0.00 2.71
3339 3802 9.234827 TGATATTATACAGCCAAATGGAATCAG 57.765 33.333 2.98 0.00 37.39 2.90
3376 3839 2.863740 TGCGCATACTTCCATAAAGACG 59.136 45.455 5.66 0.00 38.44 4.18
3499 3972 2.303600 ACGTGGAAATTAGCTACCCACA 59.696 45.455 22.77 7.19 45.52 4.17
3504 3977 3.858247 AGGTCACGTGGAAATTAGCTAC 58.142 45.455 17.00 1.73 0.00 3.58
3512 3985 0.531090 CGGACAAGGTCACGTGGAAA 60.531 55.000 17.00 0.00 33.68 3.13
3537 4017 4.536090 TGAAGGACTGGAATATCACCAACT 59.464 41.667 3.72 1.01 36.95 3.16
3538 4018 4.843728 TGAAGGACTGGAATATCACCAAC 58.156 43.478 3.72 2.02 36.95 3.77
3611 5143 2.686915 AGCTTGCTGATAATGCCAAGAC 59.313 45.455 3.64 0.00 0.00 3.01
3650 5182 1.619827 CATGCCTCCAAAAGCTCCAAA 59.380 47.619 0.00 0.00 0.00 3.28
3668 5200 4.348486 TGGTTTGGGCATATACAACACAT 58.652 39.130 0.00 0.00 0.00 3.21
3807 5339 3.181465 ACATTTAGGTGTAGCGGAGATGG 60.181 47.826 0.00 0.00 0.00 3.51
3832 5364 5.116882 AGTTGGACTAAAAGGCGATATGAC 58.883 41.667 0.00 0.00 0.00 3.06
3833 5365 5.353394 AGTTGGACTAAAAGGCGATATGA 57.647 39.130 0.00 0.00 0.00 2.15
3855 5390 2.940971 GCAATGCTGTATGTCACTGGGA 60.941 50.000 0.00 0.00 0.00 4.37
3857 5392 2.086094 TGCAATGCTGTATGTCACTGG 58.914 47.619 6.82 0.00 0.00 4.00
3863 5398 2.698803 TCGACTTGCAATGCTGTATGT 58.301 42.857 6.82 0.00 0.00 2.29
3870 5405 0.097674 AGCGATTCGACTTGCAATGC 59.902 50.000 16.46 0.00 0.00 3.56
3878 5413 6.655848 AGGTTCTATAAGATAGCGATTCGACT 59.344 38.462 10.88 9.04 0.00 4.18
3972 5570 3.265791 GTGAGACATCGAATCAAAGCCT 58.734 45.455 0.00 0.00 0.00 4.58
3988 5826 6.823497 TGCTGATATTGATGAAGATGTGAGA 58.177 36.000 0.00 0.00 0.00 3.27
4010 5848 2.225963 GGTCTATGCTGCAGAATGATGC 59.774 50.000 20.43 0.39 46.68 3.91
4015 5853 1.216064 TGGGGTCTATGCTGCAGAAT 58.784 50.000 20.43 16.54 0.00 2.40
4041 5879 3.434596 GGTACCTCACAAGGACACCTTTT 60.435 47.826 4.06 0.00 46.67 2.27
4090 5934 2.457598 CACTACTAGGCACAAGGAGGA 58.542 52.381 0.00 0.00 0.00 3.71
4091 5935 1.134670 GCACTACTAGGCACAAGGAGG 60.135 57.143 0.00 0.00 0.00 4.30
4092 5936 1.827969 AGCACTACTAGGCACAAGGAG 59.172 52.381 0.00 0.00 0.00 3.69
4093 5937 1.550524 CAGCACTACTAGGCACAAGGA 59.449 52.381 0.00 0.00 0.00 3.36
4094 5938 1.550524 TCAGCACTACTAGGCACAAGG 59.449 52.381 0.00 0.00 0.00 3.61
4110 5960 1.154413 CATGACGTGCGGTTTCAGC 60.154 57.895 0.00 0.00 0.00 4.26
4151 6030 9.599866 AAACTTTGGAATCAAAAGGTTTTAGAG 57.400 29.630 14.08 0.00 41.70 2.43
4152 6031 9.952030 AAAACTTTGGAATCAAAAGGTTTTAGA 57.048 25.926 17.84 0.00 42.60 2.10
4195 6085 6.309389 AGTCGGACAAGGGTTAATAGAAAT 57.691 37.500 11.27 0.00 0.00 2.17
4233 6123 0.743097 GCTCTTTGGGGATGATGTGC 59.257 55.000 0.00 0.00 0.00 4.57
4286 6176 7.992608 GGATCAATTTTGGTTAAAATAGGCCAT 59.007 33.333 5.01 0.00 43.74 4.40
4289 6179 8.882736 CAAGGATCAATTTTGGTTAAAATAGGC 58.117 33.333 0.00 0.00 43.74 3.93
4305 6219 1.637553 AGGACTGCACCAAGGATCAAT 59.362 47.619 0.00 0.00 0.00 2.57
4310 6224 3.806949 AAAATAGGACTGCACCAAGGA 57.193 42.857 0.00 0.00 0.00 3.36
4345 6265 2.095969 CGAAAAAGTGATTGCGGCACTA 60.096 45.455 0.05 0.00 45.27 2.74
4350 6270 2.719046 GTGTTCGAAAAAGTGATTGCGG 59.281 45.455 0.00 0.00 0.00 5.69
4354 6274 6.027749 GTGACAAGTGTTCGAAAAAGTGATT 58.972 36.000 0.00 0.00 0.00 2.57
4464 6393 4.399934 GGAGAAGGCCTAGGATAAGATACG 59.600 50.000 14.75 0.00 0.00 3.06
4475 6404 3.198635 TCATTGACTTGGAGAAGGCCTAG 59.801 47.826 5.16 0.00 36.19 3.02
4501 6430 3.696051 GCAAAAGAAGGACCAGCATATGA 59.304 43.478 6.97 0.00 0.00 2.15
4509 6438 1.149101 AGGGAGCAAAAGAAGGACCA 58.851 50.000 0.00 0.00 0.00 4.02
4588 6518 3.243737 GGGCGAAAATCAGTTTGGTTTCT 60.244 43.478 0.00 0.00 27.60 2.52
4606 6536 1.577328 AAGAATGACAAGCGTGGGCG 61.577 55.000 4.26 0.00 46.35 6.13
4609 6539 4.670221 GCTTAAGAAGAATGACAAGCGTGG 60.670 45.833 6.67 0.00 30.29 4.94
4673 6604 3.131709 ACTATGGAATGAAGCCGATGG 57.868 47.619 0.00 0.00 0.00 3.51
4778 6775 4.340950 AGCTTTTCAACCTCATTTTTCGGA 59.659 37.500 0.00 0.00 0.00 4.55
4825 6823 2.747855 GTGCAAAGGCCTCGGAGG 60.748 66.667 19.95 19.95 40.13 4.30
4839 6837 1.669999 GCATCCCCATTGAGGTGTGC 61.670 60.000 2.76 2.76 34.66 4.57
4873 6871 4.879197 AAAAGATGAAAGGAAGCAAGGG 57.121 40.909 0.00 0.00 0.00 3.95
4910 6908 0.908198 GTGAATCCAGGAGCCTGAGT 59.092 55.000 17.88 3.66 46.30 3.41
4931 6929 1.993956 TACCAGCAGGCATTTTGTGT 58.006 45.000 0.00 0.00 39.06 3.72
5111 7112 2.744760 TGGTCAAGATCTGAGAGAGGG 58.255 52.381 0.00 0.00 33.60 4.30
5139 7140 4.530946 ACGAAGGAAGGAGAAAAGGACATA 59.469 41.667 0.00 0.00 0.00 2.29
5191 7192 0.314302 AAGCGAGCTGTAAGTGACGT 59.686 50.000 0.00 0.00 35.30 4.34
5215 7229 3.898482 AGTACAAGGTGGCAAAGAAAGT 58.102 40.909 0.00 0.00 0.00 2.66
5231 7246 5.926542 GTGCAGACAACATAGAGAAAGTACA 59.073 40.000 0.00 0.00 0.00 2.90
5232 7247 6.159988 AGTGCAGACAACATAGAGAAAGTAC 58.840 40.000 0.00 0.00 0.00 2.73
5233 7248 6.346477 AGTGCAGACAACATAGAGAAAGTA 57.654 37.500 0.00 0.00 0.00 2.24
5234 7249 5.220710 AGTGCAGACAACATAGAGAAAGT 57.779 39.130 0.00 0.00 0.00 2.66
5283 7298 2.163412 GCCGCAAATTCACCATTGTCTA 59.837 45.455 0.00 0.00 0.00 2.59
5308 7323 4.475016 ACTAGGACTATCAAGGTGGCAAAT 59.525 41.667 0.00 0.00 0.00 2.32
5397 7412 8.528044 ACAAACCAAACTAGGACTATCAAAAA 57.472 30.769 0.00 0.00 0.00 1.94
5398 7413 8.410141 CAACAAACCAAACTAGGACTATCAAAA 58.590 33.333 0.00 0.00 0.00 2.44
5399 7414 7.013846 CCAACAAACCAAACTAGGACTATCAAA 59.986 37.037 0.00 0.00 0.00 2.69
5444 7460 0.958822 CCCCCAACACACAAACTAGC 59.041 55.000 0.00 0.00 0.00 3.42
5471 7487 5.991606 AGAAAAACCAAAAGGCAGAATTAGC 59.008 36.000 0.00 0.00 0.00 3.09
5477 7493 6.478512 ACAATAGAAAAACCAAAAGGCAGA 57.521 33.333 0.00 0.00 0.00 4.26
5478 7494 6.202762 GGAACAATAGAAAAACCAAAAGGCAG 59.797 38.462 0.00 0.00 0.00 4.85
5488 7504 5.915196 GCAGTCACAGGAACAATAGAAAAAC 59.085 40.000 0.00 0.00 0.00 2.43
5494 7636 3.814842 TGTTGCAGTCACAGGAACAATAG 59.185 43.478 4.73 0.00 42.95 1.73
5606 7831 6.693113 GGACTGTCAAACTTCTTTTTCATGTC 59.307 38.462 10.38 0.00 0.00 3.06
5608 7833 6.799512 AGGACTGTCAAACTTCTTTTTCATG 58.200 36.000 10.38 0.00 0.00 3.07
5612 7837 7.939784 AACTAGGACTGTCAAACTTCTTTTT 57.060 32.000 10.38 0.00 0.00 1.94
5617 7842 5.123936 ACCAAACTAGGACTGTCAAACTTC 58.876 41.667 10.38 0.00 0.00 3.01
5658 7885 2.849942 ACACACAAACTAGCAGCATGA 58.150 42.857 0.00 0.00 39.69 3.07
5660 7887 2.294233 CCAACACACAAACTAGCAGCAT 59.706 45.455 0.00 0.00 0.00 3.79
5674 7901 1.576368 AACCCCTCACCACCAACACA 61.576 55.000 0.00 0.00 0.00 3.72
5682 7909 4.396357 AATCAACATTAACCCCTCACCA 57.604 40.909 0.00 0.00 0.00 4.17
5712 7939 3.746492 CAGTCAAAGGAAGGGAAGTTACG 59.254 47.826 0.00 0.00 0.00 3.18
5720 7947 0.178992 TGTGGCAGTCAAAGGAAGGG 60.179 55.000 0.00 0.00 0.00 3.95
5736 7963 5.163561 ACCACAAATTTACCAGTGTCTTGTG 60.164 40.000 5.31 5.31 0.00 3.33
6128 8356 2.492088 GGTAATTTGCACCAGGGAGTTC 59.508 50.000 0.00 0.00 36.01 3.01
6224 8452 2.100605 AAGCATCGGTTTCCTCAGAC 57.899 50.000 0.00 0.00 0.00 3.51
6227 8455 1.073125 TCCAAAGCATCGGTTTCCTCA 59.927 47.619 0.00 0.00 30.52 3.86
6255 8483 2.947652 CAGGGCAAGTTGACTATGATGG 59.052 50.000 9.01 0.00 0.00 3.51
6387 8616 3.157881 GGAGATGATGGTCGATGGTCTA 58.842 50.000 0.00 0.00 0.00 2.59
6417 8646 2.234300 TGAAGCTTTCGACGAGGTTT 57.766 45.000 0.00 0.00 35.20 3.27
6432 8661 4.022849 GTGATTTCCCACTTGAGGTTGAAG 60.023 45.833 0.00 0.00 34.38 3.02
6460 8689 4.389576 GCACGCGTTTGGCTCCTG 62.390 66.667 10.22 0.00 40.44 3.86
6468 8697 1.741770 GATCCTCAGGCACGCGTTT 60.742 57.895 10.22 0.00 0.00 3.60
6474 8703 1.144936 CGGAAGGATCCTCAGGCAC 59.855 63.158 16.52 2.88 44.17 5.01
6483 8712 3.400007 GCGAACTGCGGAAGGATC 58.600 61.111 0.00 0.00 41.29 3.36
6517 8746 1.599606 GACTCTTGCTCCGAGGCAGA 61.600 60.000 0.00 3.25 43.39 4.26
6519 8748 2.650116 GGACTCTTGCTCCGAGGCA 61.650 63.158 0.00 0.00 38.30 4.75
6520 8749 2.185608 GGACTCTTGCTCCGAGGC 59.814 66.667 0.00 0.00 35.75 4.70
6597 8835 3.718210 GAAGGGTAGCCTGGCGACG 62.718 68.421 22.80 0.00 35.10 5.12
6601 8839 2.747443 GGAGGAAGGGTAGCCTGGC 61.747 68.421 15.71 11.65 33.84 4.85
6632 8870 0.946221 ACAGCGAAAGAACTCGGCAG 60.946 55.000 0.00 0.00 39.27 4.85
6635 8873 1.063806 CAGACAGCGAAAGAACTCGG 58.936 55.000 0.00 0.00 39.27 4.63
6636 8874 1.453524 CACAGACAGCGAAAGAACTCG 59.546 52.381 0.00 0.00 41.84 4.18
6640 8878 2.362397 AGAGACACAGACAGCGAAAGAA 59.638 45.455 0.00 0.00 0.00 2.52
6643 8881 1.409064 ACAGAGACACAGACAGCGAAA 59.591 47.619 0.00 0.00 0.00 3.46
6646 8884 1.401670 GGTACAGAGACACAGACAGCG 60.402 57.143 0.00 0.00 0.00 5.18
6652 8890 8.856153 ATATACATCTAGGTACAGAGACACAG 57.144 38.462 0.00 0.00 0.00 3.66
6653 8891 9.286170 GAATATACATCTAGGTACAGAGACACA 57.714 37.037 0.00 0.00 0.00 3.72
6654 8892 8.732531 GGAATATACATCTAGGTACAGAGACAC 58.267 40.741 0.00 0.00 0.00 3.67
6655 8893 8.445588 TGGAATATACATCTAGGTACAGAGACA 58.554 37.037 0.00 0.00 0.00 3.41
6656 8894 8.865420 TGGAATATACATCTAGGTACAGAGAC 57.135 38.462 0.00 0.00 0.00 3.36
6670 8908 9.822185 GCAAAAAGAAAGGAATGGAATATACAT 57.178 29.630 0.00 0.00 0.00 2.29
6701 8939 1.808343 GGGGTATCAACAACGACCAAC 59.192 52.381 0.00 0.00 33.33 3.77
6704 8942 0.741927 CCGGGGTATCAACAACGACC 60.742 60.000 0.00 0.00 0.00 4.79
6807 9059 2.363038 CCCGATCCTGTTATGTTCGGTA 59.637 50.000 8.63 0.00 46.02 4.02
6828 9080 1.287730 CGTGCAGCTCTGAGTTGGAC 61.288 60.000 27.72 27.72 42.56 4.02
6860 9112 1.415659 GTCAGCAGGCATGTATCTCCT 59.584 52.381 0.00 0.00 0.00 3.69
6861 9113 1.542108 GGTCAGCAGGCATGTATCTCC 60.542 57.143 0.00 0.00 0.00 3.71
6862 9114 1.542108 GGGTCAGCAGGCATGTATCTC 60.542 57.143 0.00 0.00 0.00 2.75
6867 9119 2.353958 CTGGGTCAGCAGGCATGT 59.646 61.111 0.00 0.00 0.00 3.21
6950 9312 0.454600 GGTCTCTTCGATGTGGCGTA 59.545 55.000 0.00 0.00 0.00 4.42
6958 9320 0.171455 GCGTCACTGGTCTCTTCGAT 59.829 55.000 0.00 0.00 0.00 3.59
6961 9323 1.011451 GCTGCGTCACTGGTCTCTTC 61.011 60.000 0.00 0.00 0.00 2.87
6966 9328 3.406361 CGTGCTGCGTCACTGGTC 61.406 66.667 6.59 0.00 34.92 4.02
7009 9371 0.965866 ATCGCTGAACTCCGTCCTCA 60.966 55.000 0.00 0.00 0.00 3.86
7013 9375 0.103208 ATCCATCGCTGAACTCCGTC 59.897 55.000 0.00 0.00 0.00 4.79
7014 9376 0.179100 CATCCATCGCTGAACTCCGT 60.179 55.000 0.00 0.00 0.00 4.69
7016 9378 0.465705 TCCATCCATCGCTGAACTCC 59.534 55.000 0.00 0.00 0.00 3.85
7018 9380 1.198713 AGTCCATCCATCGCTGAACT 58.801 50.000 0.00 0.00 0.00 3.01
7019 9381 1.667724 CAAGTCCATCCATCGCTGAAC 59.332 52.381 0.00 0.00 0.00 3.18
7021 9383 0.462581 GCAAGTCCATCCATCGCTGA 60.463 55.000 0.00 0.00 0.00 4.26
7022 9384 0.745486 TGCAAGTCCATCCATCGCTG 60.745 55.000 0.00 0.00 0.00 5.18
7023 9385 0.182061 ATGCAAGTCCATCCATCGCT 59.818 50.000 0.00 0.00 0.00 4.93
7024 9386 0.309922 CATGCAAGTCCATCCATCGC 59.690 55.000 0.00 0.00 0.00 4.58
7025 9387 0.309922 GCATGCAAGTCCATCCATCG 59.690 55.000 14.21 0.00 0.00 3.84
7026 9388 1.395635 TGCATGCAAGTCCATCCATC 58.604 50.000 20.30 0.00 0.00 3.51
7086 9468 2.514803 TCTGTGATGACGGTCAGAGAA 58.485 47.619 16.84 2.04 43.14 2.87
7166 9548 1.000843 AGGAATTGGTTTTGCTTCGCC 59.999 47.619 0.00 0.00 0.00 5.54
7205 9588 0.982673 GTACAGTGCAACGACTAGCG 59.017 55.000 0.00 5.24 45.86 4.26
7245 9731 3.394719 TGCTAAGTCAATGTGTAACGCA 58.605 40.909 0.00 0.00 42.39 5.24
7256 9742 5.858381 AGTGTCTGAGAATTGCTAAGTCAA 58.142 37.500 0.00 0.00 26.95 3.18
7270 9756 0.730834 CGCTCCGTGAAGTGTCTGAG 60.731 60.000 0.00 0.00 0.00 3.35
7276 9762 0.240145 TAGTGTCGCTCCGTGAAGTG 59.760 55.000 0.00 0.00 0.00 3.16
7278 9764 0.522180 ACTAGTGTCGCTCCGTGAAG 59.478 55.000 0.00 0.00 0.00 3.02
7283 9769 0.097325 GTCTGACTAGTGTCGCTCCG 59.903 60.000 0.00 0.00 45.70 4.63
7319 9805 2.436469 TACACATGCAGCGCCTGG 60.436 61.111 2.29 0.00 31.21 4.45
7331 9817 1.970640 AGCCAGACATCACACTACACA 59.029 47.619 0.00 0.00 0.00 3.72
7365 9852 3.924114 TTCACTTCACTGACCCTTTCA 57.076 42.857 0.00 0.00 0.00 2.69
7428 9915 5.332707 GGCAAAGACGATAAATTTGACCTC 58.667 41.667 0.00 0.00 36.20 3.85
7440 9927 0.178068 AGTATGGCGGCAAAGACGAT 59.822 50.000 18.31 0.00 35.20 3.73
7458 10214 8.890718 ACATATCATGACACAAAAGAGAATGAG 58.109 33.333 0.00 0.00 0.00 2.90
7468 10224 7.173735 GGATGCAGATACATATCATGACACAAA 59.826 37.037 0.00 0.00 35.17 2.83
7538 10295 4.532834 CCCCGGAGAAGAAAATGGAAATA 58.467 43.478 0.73 0.00 0.00 1.40
7542 10299 0.623723 CCCCCGGAGAAGAAAATGGA 59.376 55.000 0.73 0.00 0.00 3.41
7559 10316 1.197721 CGCGGCATTATTGATCTTCCC 59.802 52.381 0.00 0.00 0.00 3.97


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.