Multiple sequence alignment - TraesCS7B01G010300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G010300 chr7B 100.000 4557 0 0 1 4557 6368917 6373473 0.000000e+00 8416.0
1 TraesCS7B01G010300 chr7D 96.676 2226 54 7 1684 3899 64732258 64734473 0.000000e+00 3683.0
2 TraesCS7B01G010300 chr7D 94.387 1639 57 13 1 1626 64730418 64732034 0.000000e+00 2484.0
3 TraesCS7B01G010300 chr7D 87.456 287 28 3 4027 4305 245404971 245405257 1.580000e-84 324.0
4 TraesCS7B01G010300 chr7D 97.354 189 5 0 4369 4557 64734922 64735110 5.690000e-84 322.0
5 TraesCS7B01G010300 chr7D 88.235 272 23 4 4028 4291 619818359 619818629 2.650000e-82 316.0
6 TraesCS7B01G010300 chr7D 96.154 130 5 0 3899 4028 64734763 64734892 3.570000e-51 213.0
7 TraesCS7B01G010300 chr7D 97.872 47 1 0 1631 1677 64732153 64732199 1.050000e-11 82.4
8 TraesCS7B01G010300 chr7D 92.857 42 0 3 1942 1982 626944824 626944863 1.770000e-04 58.4
9 TraesCS7B01G010300 chr7A 97.098 1792 32 8 1863 3641 68887670 68889454 0.000000e+00 3003.0
10 TraesCS7B01G010300 chr7A 89.917 1448 57 24 1 1441 68884296 68885661 0.000000e+00 1783.0
11 TraesCS7B01G010300 chr7A 95.735 211 8 1 1467 1677 68887128 68887337 5.650000e-89 339.0
12 TraesCS7B01G010300 chr7A 94.470 217 6 1 3689 3899 68889451 68889667 3.400000e-86 329.0
13 TraesCS7B01G010300 chr7A 97.238 181 5 0 1684 1864 68887396 68887576 1.590000e-79 307.0
14 TraesCS7B01G010300 chr7A 96.196 184 7 0 4374 4557 68900194 68900377 7.410000e-78 302.0
15 TraesCS7B01G010300 chr7A 98.246 57 1 0 3899 3955 68890651 68890707 2.900000e-17 100.0
16 TraesCS7B01G010300 chr4B 91.820 1956 112 17 1689 3603 673191002 673189054 0.000000e+00 2682.0
17 TraesCS7B01G010300 chr4B 78.201 945 85 58 273 1126 673193102 673192188 4.100000e-135 492.0
18 TraesCS7B01G010300 chr4B 87.368 285 28 2 4028 4305 572208253 572208536 2.050000e-83 320.0
19 TraesCS7B01G010300 chr4B 84.244 311 42 1 4029 4332 464536095 464535785 3.450000e-76 296.0
20 TraesCS7B01G010300 chr4B 91.228 171 10 3 1508 1675 673191447 673191279 1.280000e-55 228.0
21 TraesCS7B01G010300 chr2D 93.147 1357 72 12 1839 3188 614871715 614873057 0.000000e+00 1971.0
22 TraesCS7B01G010300 chr2D 85.260 597 57 17 1 590 614867565 614868137 1.830000e-163 586.0
23 TraesCS7B01G010300 chr2D 84.743 603 31 21 582 1158 614868570 614869137 8.620000e-152 547.0
24 TraesCS7B01G010300 chr2D 91.212 330 29 0 3260 3589 614875292 614875621 2.500000e-122 449.0
25 TraesCS7B01G010300 chr2D 94.839 155 8 0 1690 1844 614871383 614871537 4.550000e-60 243.0
26 TraesCS7B01G010300 chr2D 87.574 169 10 5 1514 1677 614871151 614871313 7.790000e-43 185.0
27 TraesCS7B01G010300 chr4A 86.031 1310 120 28 2254 3532 628330554 628329277 0.000000e+00 1347.0
28 TraesCS7B01G010300 chr4A 85.852 311 34 4 4028 4330 690426532 690426224 5.690000e-84 322.0
29 TraesCS7B01G010300 chr4A 93.939 66 3 1 1918 1982 628332735 628332670 1.040000e-16 99.0
30 TraesCS7B01G010300 chr4A 90.789 76 4 1 1517 1589 628332921 628332846 1.040000e-16 99.0
31 TraesCS7B01G010300 chr4A 90.741 54 4 1 1953 2005 635738167 635738220 2.270000e-08 71.3
32 TraesCS7B01G010300 chr4A 100.000 32 0 0 1953 1984 542605999 542605968 4.920000e-05 60.2
33 TraesCS7B01G010300 chr5B 88.148 945 78 12 2254 3189 682700496 682699577 0.000000e+00 1094.0
34 TraesCS7B01G010300 chr5B 85.981 321 32 6 3215 3532 682699412 682699102 9.450000e-87 331.0
35 TraesCS7B01G010300 chr5B 82.230 287 27 15 851 1123 535284546 535284822 4.590000e-55 226.0
36 TraesCS7B01G010300 chr5B 87.963 108 8 2 1386 1493 682703153 682703051 6.190000e-24 122.0
37 TraesCS7B01G010300 chr5D 87.937 945 80 13 2254 3189 540288857 540287938 0.000000e+00 1083.0
38 TraesCS7B01G010300 chr5D 86.149 296 29 8 4042 4330 305207485 305207195 4.430000e-80 309.0
39 TraesCS7B01G010300 chr5D 84.298 121 13 2 998 1118 540290145 540290031 3.730000e-21 113.0
40 TraesCS7B01G010300 chr5D 86.667 60 7 1 1953 2011 548489980 548489921 1.060000e-06 65.8
41 TraesCS7B01G010300 chr5A 91.118 653 42 8 2315 2960 707643607 707644250 0.000000e+00 870.0
42 TraesCS7B01G010300 chr5A 82.286 175 11 5 3234 3403 707644633 707644792 2.860000e-27 134.0
43 TraesCS7B01G010300 chrUn 89.500 400 31 4 2299 2687 99838361 99838760 3.170000e-136 496.0
44 TraesCS7B01G010300 chrUn 88.103 311 29 2 4028 4330 176729 176419 3.350000e-96 363.0
45 TraesCS7B01G010300 chrUn 86.996 223 22 1 4117 4332 477937677 477937455 1.270000e-60 244.0
46 TraesCS7B01G010300 chr2B 88.065 310 30 1 4028 4330 765818783 765818474 1.210000e-95 361.0
47 TraesCS7B01G010300 chr2B 87.541 305 32 4 4028 4327 570887613 570887916 9.380000e-92 348.0
48 TraesCS7B01G010300 chr2B 87.129 303 31 4 4028 4323 713926471 713926170 2.030000e-88 337.0
49 TraesCS7B01G010300 chr2B 93.600 125 8 0 3422 3546 749300741 749300865 2.160000e-43 187.0
50 TraesCS7B01G010300 chr2B 96.296 108 4 0 2710 2817 749306151 749306258 1.300000e-40 178.0
51 TraesCS7B01G010300 chr2B 75.281 356 49 26 3542 3866 749301178 749301525 2.860000e-27 134.0
52 TraesCS7B01G010300 chr3D 87.419 310 31 2 4025 4327 372521509 372521817 2.610000e-92 350.0
53 TraesCS7B01G010300 chr4D 87.108 287 25 4 4028 4302 347514936 347515222 9.520000e-82 315.0
54 TraesCS7B01G010300 chr1D 88.843 242 23 3 4026 4266 449312059 449312297 1.240000e-75 294.0
55 TraesCS7B01G010300 chr1D 93.333 45 3 0 4283 4327 86147826 86147870 2.940000e-07 67.6
56 TraesCS7B01G010300 chr3A 82.237 304 47 3 4029 4332 682986846 682986550 5.850000e-64 255.0
57 TraesCS7B01G010300 chr3B 82.353 289 28 14 851 1126 830288756 830288478 3.550000e-56 230.0
58 TraesCS7B01G010300 chr3B 81.661 289 30 15 851 1126 830562898 830562620 7.680000e-53 219.0
59 TraesCS7B01G010300 chr3B 92.727 55 3 1 474 528 778413136 778413189 1.360000e-10 78.7
60 TraesCS7B01G010300 chr3B 92.000 50 4 0 2254 2303 607811598 607811549 2.270000e-08 71.3
61 TraesCS7B01G010300 chr1B 82.955 176 12 10 851 1014 77961862 77961693 4.750000e-30 143.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G010300 chr7B 6368917 6373473 4556 False 8416.000000 8416 100.000000 1 4557 1 chr7B.!!$F1 4556
1 TraesCS7B01G010300 chr7D 64730418 64735110 4692 False 1356.880000 3683 96.488600 1 4557 5 chr7D.!!$F4 4556
2 TraesCS7B01G010300 chr7A 68884296 68890707 6411 False 976.833333 3003 95.450667 1 3955 6 chr7A.!!$F2 3954
3 TraesCS7B01G010300 chr4B 673189054 673193102 4048 True 1134.000000 2682 87.083000 273 3603 3 chr4B.!!$R2 3330
4 TraesCS7B01G010300 chr2D 614867565 614875621 8056 False 663.500000 1971 89.462500 1 3589 6 chr2D.!!$F1 3588
5 TraesCS7B01G010300 chr4A 628329277 628332921 3644 True 515.000000 1347 90.253000 1517 3532 3 chr4A.!!$R3 2015
6 TraesCS7B01G010300 chr5B 682699102 682703153 4051 True 515.666667 1094 87.364000 1386 3532 3 chr5B.!!$R1 2146
7 TraesCS7B01G010300 chr5D 540287938 540290145 2207 True 598.000000 1083 86.117500 998 3189 2 chr5D.!!$R3 2191
8 TraesCS7B01G010300 chr5A 707643607 707644792 1185 False 502.000000 870 86.702000 2315 3403 2 chr5A.!!$F1 1088

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
422 438 0.965363 TTCAAAAGATCAGCCGGCCC 60.965 55.000 26.15 10.4 0.00 5.80 F
968 1512 1.944430 GCTCCCTTTGACCAGTAACGG 60.944 57.143 0.00 0.0 0.00 4.44 F
970 1514 2.038033 CTCCCTTTGACCAGTAACGGAA 59.962 50.000 0.00 0.0 0.00 4.30 F
1010 1563 2.124695 GTGAGGGATGGCCGGAAC 60.125 66.667 5.05 0.0 33.83 3.62 F
1506 5214 2.496899 AATTGGCCGACAGATGAACT 57.503 45.000 0.00 0.0 0.00 3.01 F
1770 5956 2.820059 TGTTCTCGTGCTGACTTGAT 57.180 45.000 0.00 0.0 0.00 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1268 3448 1.420430 TCCACGGTCTCCAGTTTTCT 58.580 50.000 0.00 0.0 0.00 2.52 R
2716 9626 0.465460 ACGAAAGCCAGCCAGTGAAA 60.465 50.000 0.00 0.0 0.00 2.69 R
2923 9838 7.169813 TGACGCTGAGCAAGATATTAAATACAG 59.830 37.037 4.88 0.0 0.00 2.74 R
2979 9912 8.324306 TGAAGAGTAATCCAATTTCTCAGTCAT 58.676 33.333 8.42 0.0 38.62 3.06 R
3349 12629 1.285950 GACCCAAAGCTTCAACCGC 59.714 57.895 0.00 0.0 0.00 5.68 R
3632 12916 1.138859 TGATTTGCCGTCCTGATCGAT 59.861 47.619 0.00 0.0 0.00 3.59 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 2.380410 CGCTACCGACACTTGTGGC 61.380 63.158 5.72 0.71 35.83 5.01
130 134 1.539827 TCTTCACTCGCATCTTCGTCA 59.460 47.619 0.00 0.00 0.00 4.35
131 135 2.164422 TCTTCACTCGCATCTTCGTCAT 59.836 45.455 0.00 0.00 0.00 3.06
261 266 5.988561 GCACAACAAGATCCATTTGGTAAAA 59.011 36.000 0.00 0.00 36.34 1.52
332 343 2.625823 GCACAACACGACCCATGGG 61.626 63.158 30.23 30.23 42.03 4.00
422 438 0.965363 TTCAAAAGATCAGCCGGCCC 60.965 55.000 26.15 10.40 0.00 5.80
816 1329 2.104111 TCGGGAGAGCAAACAAGAAGAA 59.896 45.455 0.00 0.00 0.00 2.52
817 1330 2.481952 CGGGAGAGCAAACAAGAAGAAG 59.518 50.000 0.00 0.00 0.00 2.85
818 1331 3.744660 GGGAGAGCAAACAAGAAGAAGA 58.255 45.455 0.00 0.00 0.00 2.87
819 1332 4.137543 GGGAGAGCAAACAAGAAGAAGAA 58.862 43.478 0.00 0.00 0.00 2.52
820 1333 4.215185 GGGAGAGCAAACAAGAAGAAGAAG 59.785 45.833 0.00 0.00 0.00 2.85
821 1334 5.059833 GGAGAGCAAACAAGAAGAAGAAGA 58.940 41.667 0.00 0.00 0.00 2.87
822 1335 5.529060 GGAGAGCAAACAAGAAGAAGAAGAA 59.471 40.000 0.00 0.00 0.00 2.52
823 1336 6.293353 GGAGAGCAAACAAGAAGAAGAAGAAG 60.293 42.308 0.00 0.00 0.00 2.85
824 1337 6.352516 AGAGCAAACAAGAAGAAGAAGAAGA 58.647 36.000 0.00 0.00 0.00 2.87
839 1352 8.585018 AGAAGAAGAAGAAGAAGAAGAAGGTAG 58.415 37.037 0.00 0.00 0.00 3.18
949 1490 1.992170 CCGTGTAGGTGTAGTGAAGC 58.008 55.000 0.00 0.00 34.51 3.86
968 1512 1.944430 GCTCCCTTTGACCAGTAACGG 60.944 57.143 0.00 0.00 0.00 4.44
970 1514 2.038033 CTCCCTTTGACCAGTAACGGAA 59.962 50.000 0.00 0.00 0.00 4.30
1010 1563 2.124695 GTGAGGGATGGCCGGAAC 60.125 66.667 5.05 0.00 33.83 3.62
1268 3448 8.196771 GCAGTTTGATTCCAAATATATGAACCA 58.803 33.333 0.00 0.00 43.37 3.67
1339 3524 7.229306 GCCTTGACAATGGAATGATATAGAACA 59.771 37.037 7.59 0.00 0.00 3.18
1358 3544 5.938125 AGAACATTAAAGTATTGTGGACGCT 59.062 36.000 0.00 0.00 0.00 5.07
1396 3585 5.539955 AGAAACACAATTTGTATTCCTGGCT 59.460 36.000 17.17 3.51 37.51 4.75
1506 5214 2.496899 AATTGGCCGACAGATGAACT 57.503 45.000 0.00 0.00 0.00 3.01
1598 5385 6.591750 AGTCCGTCATACTTATTAGATGGG 57.408 41.667 0.00 0.00 37.67 4.00
1629 5416 8.353423 AGACTGCAGGTCAAACAATTTATTAT 57.647 30.769 19.93 0.00 46.72 1.28
1677 5586 5.091261 AGGTTAGATGCAACTCTGGTTAG 57.909 43.478 0.00 0.00 33.88 2.34
1680 5589 6.212791 AGGTTAGATGCAACTCTGGTTAGTAA 59.787 38.462 0.00 0.00 33.88 2.24
1681 5590 7.048512 GGTTAGATGCAACTCTGGTTAGTAAT 58.951 38.462 0.00 0.00 33.88 1.89
1682 5591 7.011482 GGTTAGATGCAACTCTGGTTAGTAATG 59.989 40.741 0.00 0.00 33.88 1.90
1687 5873 4.760204 GCAACTCTGGTTAGTAATGGTTGT 59.240 41.667 0.00 0.00 36.30 3.32
1770 5956 2.820059 TGTTCTCGTGCTGACTTGAT 57.180 45.000 0.00 0.00 0.00 2.57
2167 7177 3.440173 CGTTGCCTCAGTTATTGTTGGAT 59.560 43.478 0.00 0.00 0.00 3.41
2207 7217 5.351189 CGGTCTTGATTTGTGTGACATATCA 59.649 40.000 5.94 5.94 42.15 2.15
2237 7247 5.750067 CCATTTGTTAGGAGTTATGCATTGC 59.250 40.000 3.54 0.46 0.00 3.56
2607 9495 5.075858 ACATTTGGCTTGTATGTTGATGG 57.924 39.130 0.00 0.00 0.00 3.51
2716 9626 4.135306 CTGCTCTCAACCTATTGATGCAT 58.865 43.478 0.00 0.00 45.12 3.96
2923 9838 6.457934 GGCATGCTGCTGTCATGATAATATAC 60.458 42.308 18.92 9.19 44.28 1.47
2979 9912 9.699410 ATTCTTCATTTTGTAGGGATATTGACA 57.301 29.630 0.00 0.00 0.00 3.58
3085 10018 3.408853 GGGGGCTACCAGGGTGAC 61.409 72.222 0.06 0.00 42.91 3.67
3146 10079 9.737427 CACATCTTGTATCTTAACTTCTACGAT 57.263 33.333 0.00 0.00 0.00 3.73
3349 12629 0.806102 GTGTGACCCATCATCCGTCG 60.806 60.000 0.00 0.00 37.14 5.12
3592 12876 2.169769 TGTTGTTCGGTTCTCTCAAGGT 59.830 45.455 0.00 0.00 0.00 3.50
3603 12887 4.623932 TCTCTCAAGGTAACACAAGCAT 57.376 40.909 0.00 0.00 41.41 3.79
3632 12916 0.399949 ATGCTCGGTATTCCCTGGGA 60.400 55.000 12.53 12.53 0.00 4.37
3645 12929 1.662608 CTGGGATCGATCAGGACGG 59.337 63.158 25.93 13.81 0.00 4.79
3656 12940 2.488204 TCAGGACGGCAAATCATTCA 57.512 45.000 0.00 0.00 0.00 2.57
3799 13083 0.878523 TTTCCGTGCCTGTTGAGACG 60.879 55.000 0.00 0.00 0.00 4.18
3980 14255 3.085533 TGCACCGCCAAAACATAGTATT 58.914 40.909 0.00 0.00 0.00 1.89
4004 14279 8.700722 TTATCATCGCATTTGCTGTTTAAAAT 57.299 26.923 0.51 0.00 39.32 1.82
4021 14296 0.908910 AATAGTGATGGCGGTGGTCA 59.091 50.000 0.00 0.00 0.00 4.02
4031 14306 3.948719 GGTGGTCAGGGTCGGCAA 61.949 66.667 0.00 0.00 0.00 4.52
4032 14307 2.112297 GTGGTCAGGGTCGGCAAA 59.888 61.111 0.00 0.00 0.00 3.68
4033 14308 1.303317 GTGGTCAGGGTCGGCAAAT 60.303 57.895 0.00 0.00 0.00 2.32
4034 14309 0.893727 GTGGTCAGGGTCGGCAAATT 60.894 55.000 0.00 0.00 0.00 1.82
4037 14312 1.243902 GTCAGGGTCGGCAAATTTGA 58.756 50.000 22.31 0.00 0.00 2.69
4038 14313 1.068541 GTCAGGGTCGGCAAATTTGAC 60.069 52.381 22.31 18.50 0.00 3.18
4041 14316 0.958822 GGGTCGGCAAATTTGACAGT 59.041 50.000 23.49 0.00 35.35 3.55
4042 14317 1.339929 GGGTCGGCAAATTTGACAGTT 59.660 47.619 23.49 0.00 35.35 3.16
4043 14318 2.223947 GGGTCGGCAAATTTGACAGTTT 60.224 45.455 23.49 0.00 35.35 2.66
4044 14319 3.453424 GGTCGGCAAATTTGACAGTTTT 58.547 40.909 23.49 0.00 35.35 2.43
4045 14320 3.245048 GGTCGGCAAATTTGACAGTTTTG 59.755 43.478 23.49 6.43 35.35 2.44
4046 14321 4.109050 GTCGGCAAATTTGACAGTTTTGA 58.891 39.130 23.49 8.73 35.35 2.69
4047 14322 4.026886 GTCGGCAAATTTGACAGTTTTGAC 60.027 41.667 23.49 16.30 35.35 3.18
4048 14323 3.245048 CGGCAAATTTGACAGTTTTGACC 59.755 43.478 23.49 9.05 35.40 4.02
4049 14324 4.441792 GGCAAATTTGACAGTTTTGACCT 58.558 39.130 22.31 0.00 35.83 3.85
4050 14325 4.270808 GGCAAATTTGACAGTTTTGACCTG 59.729 41.667 22.31 0.00 35.83 4.00
4051 14326 4.869861 GCAAATTTGACAGTTTTGACCTGT 59.130 37.500 22.31 0.00 45.52 4.00
4057 14332 3.390135 GACAGTTTTGACCTGTCGATGA 58.610 45.455 4.95 0.00 46.52 2.92
4058 14333 3.804036 ACAGTTTTGACCTGTCGATGAA 58.196 40.909 0.00 0.00 38.81 2.57
4059 14334 4.196193 ACAGTTTTGACCTGTCGATGAAA 58.804 39.130 0.00 0.00 38.81 2.69
4060 14335 4.821805 ACAGTTTTGACCTGTCGATGAAAT 59.178 37.500 0.00 0.00 38.81 2.17
4061 14336 5.049405 ACAGTTTTGACCTGTCGATGAAATC 60.049 40.000 0.00 0.00 38.81 2.17
4062 14337 5.049474 CAGTTTTGACCTGTCGATGAAATCA 60.049 40.000 0.00 0.00 45.97 2.57
4063 14338 5.707298 AGTTTTGACCTGTCGATGAAATCAT 59.293 36.000 0.00 0.00 45.97 2.45
4064 14339 6.207417 AGTTTTGACCTGTCGATGAAATCATT 59.793 34.615 0.00 0.00 45.97 2.57
4065 14340 6.573664 TTTGACCTGTCGATGAAATCATTT 57.426 33.333 0.00 0.00 45.97 2.32
4066 14341 5.801350 TGACCTGTCGATGAAATCATTTC 57.199 39.130 2.87 2.87 45.97 2.17
4079 14354 7.990541 TGAAATCATTTCACAAACTGAACTG 57.009 32.000 8.85 0.00 44.21 3.16
4080 14355 6.476380 TGAAATCATTTCACAAACTGAACTGC 59.524 34.615 8.85 0.00 44.21 4.40
4081 14356 5.779529 ATCATTTCACAAACTGAACTGCT 57.220 34.783 0.00 0.00 38.72 4.24
4082 14357 5.173774 TCATTTCACAAACTGAACTGCTC 57.826 39.130 0.00 0.00 38.72 4.26
4083 14358 4.036734 TCATTTCACAAACTGAACTGCTCC 59.963 41.667 0.00 0.00 38.72 4.70
4084 14359 3.281727 TTCACAAACTGAACTGCTCCT 57.718 42.857 0.00 0.00 33.65 3.69
4085 14360 4.415881 TTCACAAACTGAACTGCTCCTA 57.584 40.909 0.00 0.00 33.65 2.94
4086 14361 4.415881 TCACAAACTGAACTGCTCCTAA 57.584 40.909 0.00 0.00 0.00 2.69
4087 14362 4.973168 TCACAAACTGAACTGCTCCTAAT 58.027 39.130 0.00 0.00 0.00 1.73
4088 14363 5.376625 TCACAAACTGAACTGCTCCTAATT 58.623 37.500 0.00 0.00 0.00 1.40
4089 14364 5.827797 TCACAAACTGAACTGCTCCTAATTT 59.172 36.000 0.00 0.00 0.00 1.82
4090 14365 6.321181 TCACAAACTGAACTGCTCCTAATTTT 59.679 34.615 0.00 0.00 0.00 1.82
4091 14366 6.980397 CACAAACTGAACTGCTCCTAATTTTT 59.020 34.615 0.00 0.00 0.00 1.94
4112 14387 5.659440 TTTTTCACTCAGCTGACCTTTTT 57.341 34.783 13.74 0.00 0.00 1.94
4113 14388 4.637483 TTTCACTCAGCTGACCTTTTTG 57.363 40.909 13.74 3.60 0.00 2.44
4114 14389 3.558931 TCACTCAGCTGACCTTTTTGA 57.441 42.857 13.74 5.87 0.00 2.69
4115 14390 3.470709 TCACTCAGCTGACCTTTTTGAG 58.529 45.455 13.74 1.98 40.73 3.02
4116 14391 3.118261 TCACTCAGCTGACCTTTTTGAGT 60.118 43.478 13.74 2.70 46.77 3.41
4117 14392 3.209410 ACTCAGCTGACCTTTTTGAGTG 58.791 45.455 13.74 0.60 44.80 3.51
4118 14393 2.551459 CTCAGCTGACCTTTTTGAGTGG 59.449 50.000 13.74 0.00 32.60 4.00
4119 14394 1.000938 CAGCTGACCTTTTTGAGTGGC 60.001 52.381 8.42 0.00 0.00 5.01
4120 14395 0.040067 GCTGACCTTTTTGAGTGGCG 60.040 55.000 0.00 0.00 0.00 5.69
4121 14396 0.040067 CTGACCTTTTTGAGTGGCGC 60.040 55.000 0.00 0.00 0.00 6.53
4122 14397 1.285950 GACCTTTTTGAGTGGCGCC 59.714 57.895 22.73 22.73 0.00 6.53
4123 14398 2.142357 GACCTTTTTGAGTGGCGCCC 62.142 60.000 26.77 15.80 0.00 6.13
4124 14399 2.255252 CTTTTTGAGTGGCGCCCG 59.745 61.111 26.77 0.00 0.00 6.13
4125 14400 2.203224 TTTTTGAGTGGCGCCCGA 60.203 55.556 26.77 2.06 0.00 5.14
4126 14401 2.458006 CTTTTTGAGTGGCGCCCGAC 62.458 60.000 26.77 17.18 0.00 4.79
4127 14402 3.758973 TTTTGAGTGGCGCCCGACA 62.759 57.895 26.77 17.83 0.00 4.35
4141 14416 3.712881 GACACGAAGGCGCCACAC 61.713 66.667 31.54 17.81 42.48 3.82
4142 14417 4.235762 ACACGAAGGCGCCACACT 62.236 61.111 31.54 9.96 42.48 3.55
4143 14418 2.048597 CACGAAGGCGCCACACTA 60.049 61.111 31.54 0.00 42.48 2.74
4144 14419 2.048503 ACGAAGGCGCCACACTAC 60.049 61.111 31.54 11.50 42.48 2.73
4145 14420 2.048597 CGAAGGCGCCACACTACA 60.049 61.111 31.54 0.00 0.00 2.74
4146 14421 1.447838 CGAAGGCGCCACACTACAT 60.448 57.895 31.54 0.76 0.00 2.29
4147 14422 1.019278 CGAAGGCGCCACACTACATT 61.019 55.000 31.54 11.63 0.00 2.71
4148 14423 0.447801 GAAGGCGCCACACTACATTG 59.552 55.000 31.54 0.00 0.00 2.82
4149 14424 0.250727 AAGGCGCCACACTACATTGT 60.251 50.000 31.54 0.00 0.00 2.71
4150 14425 0.955428 AGGCGCCACACTACATTGTG 60.955 55.000 31.54 0.00 45.57 3.33
4151 14426 1.154225 GCGCCACACTACATTGTGC 60.154 57.895 0.00 0.00 44.79 4.57
4152 14427 1.851021 GCGCCACACTACATTGTGCA 61.851 55.000 0.00 0.00 44.79 4.57
4153 14428 0.166597 CGCCACACTACATTGTGCAG 59.833 55.000 0.00 0.00 44.79 4.41
4154 14429 0.109597 GCCACACTACATTGTGCAGC 60.110 55.000 0.00 0.00 44.79 5.25
4155 14430 0.166597 CCACACTACATTGTGCAGCG 59.833 55.000 0.00 0.00 44.79 5.18
4156 14431 0.453282 CACACTACATTGTGCAGCGC 60.453 55.000 0.00 0.00 40.51 5.92
4157 14432 1.135315 CACTACATTGTGCAGCGCC 59.865 57.895 2.29 0.00 0.00 6.53
4158 14433 2.040544 ACTACATTGTGCAGCGCCC 61.041 57.895 2.29 0.00 0.00 6.13
4159 14434 3.099619 CTACATTGTGCAGCGCCCG 62.100 63.158 2.29 0.00 0.00 6.13
4160 14435 3.597675 TACATTGTGCAGCGCCCGA 62.598 57.895 2.29 0.00 0.00 5.14
4161 14436 4.465512 CATTGTGCAGCGCCCGAC 62.466 66.667 2.29 0.00 0.00 4.79
4176 14451 3.418068 GACAGACAGGCGCTGCAC 61.418 66.667 7.64 2.29 36.86 4.57
4221 14496 7.562454 GGGTGATCCGAAAATTACTAAATCA 57.438 36.000 0.00 0.00 33.83 2.57
4222 14497 7.639945 GGGTGATCCGAAAATTACTAAATCAG 58.360 38.462 0.00 0.00 33.83 2.90
4223 14498 7.282450 GGGTGATCCGAAAATTACTAAATCAGT 59.718 37.037 0.00 0.00 36.53 3.41
4224 14499 8.122952 GGTGATCCGAAAATTACTAAATCAGTG 58.877 37.037 0.00 0.00 38.24 3.66
4225 14500 8.665685 GTGATCCGAAAATTACTAAATCAGTGT 58.334 33.333 0.00 0.00 38.24 3.55
4226 14501 8.664798 TGATCCGAAAATTACTAAATCAGTGTG 58.335 33.333 0.00 0.00 38.24 3.82
4227 14502 6.837992 TCCGAAAATTACTAAATCAGTGTGC 58.162 36.000 0.00 0.00 38.24 4.57
4228 14503 6.428465 TCCGAAAATTACTAAATCAGTGTGCA 59.572 34.615 0.00 0.00 38.24 4.57
4229 14504 6.742718 CCGAAAATTACTAAATCAGTGTGCAG 59.257 38.462 0.00 0.00 38.24 4.41
4230 14505 7.298122 CGAAAATTACTAAATCAGTGTGCAGT 58.702 34.615 0.00 0.00 38.24 4.40
4231 14506 7.269084 CGAAAATTACTAAATCAGTGTGCAGTG 59.731 37.037 0.00 0.80 38.24 3.66
4232 14507 5.551760 ATTACTAAATCAGTGTGCAGTGC 57.448 39.130 8.58 8.58 38.24 4.40
4233 14508 3.131709 ACTAAATCAGTGTGCAGTGCT 57.868 42.857 17.60 0.00 35.62 4.40
4234 14509 3.480470 ACTAAATCAGTGTGCAGTGCTT 58.520 40.909 17.60 1.81 35.62 3.91
4235 14510 2.787601 AAATCAGTGTGCAGTGCTTG 57.212 45.000 17.60 9.57 0.00 4.01
4236 14511 1.971481 AATCAGTGTGCAGTGCTTGA 58.029 45.000 17.60 14.34 0.00 3.02
4237 14512 1.520494 ATCAGTGTGCAGTGCTTGAG 58.480 50.000 17.60 2.85 0.00 3.02
4238 14513 0.465287 TCAGTGTGCAGTGCTTGAGA 59.535 50.000 17.60 5.28 0.00 3.27
4239 14514 0.866427 CAGTGTGCAGTGCTTGAGAG 59.134 55.000 17.60 0.00 0.00 3.20
4248 14523 2.587473 GCTTGAGAGCTAGGCGCC 60.587 66.667 21.89 21.89 45.65 6.53
4249 14524 2.895680 CTTGAGAGCTAGGCGCCA 59.104 61.111 31.54 14.00 40.39 5.69
4250 14525 1.520342 CTTGAGAGCTAGGCGCCAC 60.520 63.158 31.54 17.93 40.39 5.01
4251 14526 2.230994 CTTGAGAGCTAGGCGCCACA 62.231 60.000 31.54 15.42 40.39 4.17
4252 14527 2.202810 GAGAGCTAGGCGCCACAC 60.203 66.667 31.54 17.11 40.39 3.82
4253 14528 2.681778 AGAGCTAGGCGCCACACT 60.682 61.111 31.54 21.99 40.39 3.55
4254 14529 1.379977 AGAGCTAGGCGCCACACTA 60.380 57.895 31.54 11.42 40.39 2.74
4255 14530 0.757188 AGAGCTAGGCGCCACACTAT 60.757 55.000 31.54 16.52 40.39 2.12
4256 14531 0.959553 GAGCTAGGCGCCACACTATA 59.040 55.000 31.54 10.17 40.39 1.31
4257 14532 0.674534 AGCTAGGCGCCACACTATAC 59.325 55.000 31.54 8.64 40.39 1.47
4258 14533 0.387929 GCTAGGCGCCACACTATACA 59.612 55.000 31.54 0.33 0.00 2.29
4259 14534 1.603172 GCTAGGCGCCACACTATACAG 60.603 57.143 31.54 11.37 0.00 2.74
4260 14535 1.681793 CTAGGCGCCACACTATACAGT 59.318 52.381 31.54 5.27 34.42 3.55
4272 14547 5.345609 CACTATACAGTGTAGCGTCTAGG 57.654 47.826 9.25 0.00 46.03 3.02
4273 14548 3.814283 ACTATACAGTGTAGCGTCTAGGC 59.186 47.826 9.25 0.00 32.25 3.93
4274 14549 1.012086 TACAGTGTAGCGTCTAGGCG 58.988 55.000 13.55 13.55 38.18 5.52
4275 14550 0.959372 ACAGTGTAGCGTCTAGGCGT 60.959 55.000 19.35 7.79 38.18 5.68
4276 14551 0.170561 CAGTGTAGCGTCTAGGCGTT 59.829 55.000 19.35 15.56 38.18 4.84
4277 14552 0.170561 AGTGTAGCGTCTAGGCGTTG 59.829 55.000 19.35 0.00 38.18 4.10
4278 14553 1.153901 TGTAGCGTCTAGGCGTTGC 60.154 57.895 19.35 16.68 38.18 4.17
4279 14554 1.153901 GTAGCGTCTAGGCGTTGCA 60.154 57.895 19.35 0.00 38.18 4.08
4280 14555 0.527817 GTAGCGTCTAGGCGTTGCAT 60.528 55.000 19.35 2.42 38.18 3.96
4281 14556 0.174845 TAGCGTCTAGGCGTTGCATT 59.825 50.000 19.35 0.38 38.18 3.56
4282 14557 0.174845 AGCGTCTAGGCGTTGCATTA 59.825 50.000 19.35 0.00 38.18 1.90
4283 14558 0.577269 GCGTCTAGGCGTTGCATTAG 59.423 55.000 19.35 0.00 0.00 1.73
4284 14559 1.922570 CGTCTAGGCGTTGCATTAGT 58.077 50.000 9.00 0.00 0.00 2.24
4285 14560 1.588404 CGTCTAGGCGTTGCATTAGTG 59.412 52.381 9.00 0.00 0.00 2.74
4286 14561 1.933853 GTCTAGGCGTTGCATTAGTGG 59.066 52.381 0.00 0.00 0.00 4.00
4287 14562 1.553248 TCTAGGCGTTGCATTAGTGGT 59.447 47.619 0.00 0.00 0.00 4.16
4288 14563 2.027561 TCTAGGCGTTGCATTAGTGGTT 60.028 45.455 0.00 0.00 0.00 3.67
4289 14564 0.881118 AGGCGTTGCATTAGTGGTTG 59.119 50.000 0.00 0.00 0.00 3.77
4290 14565 0.732538 GGCGTTGCATTAGTGGTTGC 60.733 55.000 0.00 0.00 39.33 4.17
4291 14566 0.240945 GCGTTGCATTAGTGGTTGCT 59.759 50.000 0.00 0.00 39.60 3.91
4292 14567 1.335872 GCGTTGCATTAGTGGTTGCTT 60.336 47.619 0.00 0.00 39.60 3.91
4293 14568 2.862140 GCGTTGCATTAGTGGTTGCTTT 60.862 45.455 0.00 0.00 39.60 3.51
4294 14569 3.610585 GCGTTGCATTAGTGGTTGCTTTA 60.611 43.478 0.00 0.00 39.60 1.85
4295 14570 4.732784 CGTTGCATTAGTGGTTGCTTTAT 58.267 39.130 0.00 0.00 39.60 1.40
4296 14571 5.160641 CGTTGCATTAGTGGTTGCTTTATT 58.839 37.500 0.00 0.00 39.60 1.40
4297 14572 5.633182 CGTTGCATTAGTGGTTGCTTTATTT 59.367 36.000 0.00 0.00 39.60 1.40
4298 14573 6.145371 CGTTGCATTAGTGGTTGCTTTATTTT 59.855 34.615 0.00 0.00 39.60 1.82
4299 14574 7.290118 GTTGCATTAGTGGTTGCTTTATTTTG 58.710 34.615 0.00 0.00 39.60 2.44
4300 14575 6.520272 TGCATTAGTGGTTGCTTTATTTTGT 58.480 32.000 0.00 0.00 39.60 2.83
4301 14576 7.661968 TGCATTAGTGGTTGCTTTATTTTGTA 58.338 30.769 0.00 0.00 39.60 2.41
4302 14577 7.812191 TGCATTAGTGGTTGCTTTATTTTGTAG 59.188 33.333 0.00 0.00 39.60 2.74
4303 14578 7.812669 GCATTAGTGGTTGCTTTATTTTGTAGT 59.187 33.333 0.00 0.00 35.95 2.73
4304 14579 9.128107 CATTAGTGGTTGCTTTATTTTGTAGTG 57.872 33.333 0.00 0.00 0.00 2.74
4305 14580 6.084326 AGTGGTTGCTTTATTTTGTAGTGG 57.916 37.500 0.00 0.00 0.00 4.00
4306 14581 5.596772 AGTGGTTGCTTTATTTTGTAGTGGT 59.403 36.000 0.00 0.00 0.00 4.16
4307 14582 6.773685 AGTGGTTGCTTTATTTTGTAGTGGTA 59.226 34.615 0.00 0.00 0.00 3.25
4308 14583 7.285858 AGTGGTTGCTTTATTTTGTAGTGGTAA 59.714 33.333 0.00 0.00 0.00 2.85
4309 14584 7.921745 GTGGTTGCTTTATTTTGTAGTGGTAAA 59.078 33.333 0.00 0.00 0.00 2.01
4310 14585 8.643324 TGGTTGCTTTATTTTGTAGTGGTAAAT 58.357 29.630 0.00 0.00 0.00 1.40
4319 14594 8.996024 ATTTTGTAGTGGTAAATAATGCAACC 57.004 30.769 0.00 0.00 0.00 3.77
4320 14595 7.526142 TTTGTAGTGGTAAATAATGCAACCA 57.474 32.000 1.46 1.46 39.66 3.67
4326 14601 6.751514 TGGTAAATAATGCAACCACTAGTG 57.248 37.500 16.34 16.34 37.09 2.74
4327 14602 6.242396 TGGTAAATAATGCAACCACTAGTGT 58.758 36.000 21.18 7.09 37.09 3.55
4328 14603 7.395617 TGGTAAATAATGCAACCACTAGTGTA 58.604 34.615 21.18 5.90 37.09 2.90
4329 14604 7.883833 TGGTAAATAATGCAACCACTAGTGTAA 59.116 33.333 21.18 2.76 37.09 2.41
4330 14605 8.899771 GGTAAATAATGCAACCACTAGTGTAAT 58.100 33.333 21.18 4.01 32.04 1.89
4331 14606 9.716507 GTAAATAATGCAACCACTAGTGTAATG 57.283 33.333 21.18 16.40 0.00 1.90
4332 14607 6.942532 ATAATGCAACCACTAGTGTAATGG 57.057 37.500 21.18 8.39 39.57 3.16
4334 14609 3.407698 TGCAACCACTAGTGTAATGGTG 58.592 45.455 21.18 14.99 46.18 4.17
4335 14610 2.747446 GCAACCACTAGTGTAATGGTGG 59.253 50.000 21.18 12.37 46.18 4.61
4342 14617 6.668541 CACTAGTGTAATGGTGGAATTCTG 57.331 41.667 15.06 0.00 0.00 3.02
4343 14618 5.586243 CACTAGTGTAATGGTGGAATTCTGG 59.414 44.000 15.06 0.00 0.00 3.86
4344 14619 3.356290 AGTGTAATGGTGGAATTCTGGC 58.644 45.455 5.23 0.00 0.00 4.85
4345 14620 2.427095 GTGTAATGGTGGAATTCTGGCC 59.573 50.000 5.23 0.00 0.00 5.36
4346 14621 2.311542 TGTAATGGTGGAATTCTGGCCT 59.688 45.455 3.32 0.00 0.00 5.19
4347 14622 2.629017 AATGGTGGAATTCTGGCCTT 57.371 45.000 3.32 0.00 0.00 4.35
4348 14623 1.856629 ATGGTGGAATTCTGGCCTTG 58.143 50.000 3.32 0.00 0.00 3.61
4349 14624 0.776810 TGGTGGAATTCTGGCCTTGA 59.223 50.000 3.32 0.00 0.00 3.02
4350 14625 1.146774 TGGTGGAATTCTGGCCTTGAA 59.853 47.619 3.32 9.34 0.00 2.69
4351 14626 1.821136 GGTGGAATTCTGGCCTTGAAG 59.179 52.381 3.32 0.00 0.00 3.02
4352 14627 2.519013 GTGGAATTCTGGCCTTGAAGT 58.481 47.619 3.32 8.06 0.00 3.01
4353 14628 2.229784 GTGGAATTCTGGCCTTGAAGTG 59.770 50.000 14.64 0.00 0.00 3.16
4354 14629 1.821136 GGAATTCTGGCCTTGAAGTGG 59.179 52.381 14.64 0.00 0.00 4.00
4355 14630 2.519013 GAATTCTGGCCTTGAAGTGGT 58.481 47.619 14.64 3.09 0.00 4.16
4356 14631 3.561313 GGAATTCTGGCCTTGAAGTGGTA 60.561 47.826 14.64 0.00 0.00 3.25
4357 14632 3.806949 ATTCTGGCCTTGAAGTGGTAA 57.193 42.857 3.32 0.00 0.00 2.85
4358 14633 3.586470 TTCTGGCCTTGAAGTGGTAAA 57.414 42.857 3.32 0.00 0.00 2.01
4359 14634 3.806949 TCTGGCCTTGAAGTGGTAAAT 57.193 42.857 3.32 0.00 0.00 1.40
4360 14635 4.919774 TCTGGCCTTGAAGTGGTAAATA 57.080 40.909 3.32 0.00 0.00 1.40
4361 14636 5.249780 TCTGGCCTTGAAGTGGTAAATAA 57.750 39.130 3.32 0.00 0.00 1.40
4362 14637 5.826643 TCTGGCCTTGAAGTGGTAAATAAT 58.173 37.500 3.32 0.00 0.00 1.28
4363 14638 5.652014 TCTGGCCTTGAAGTGGTAAATAATG 59.348 40.000 3.32 0.00 0.00 1.90
4364 14639 4.709397 TGGCCTTGAAGTGGTAAATAATGG 59.291 41.667 3.32 0.00 0.00 3.16
4365 14640 4.441495 GGCCTTGAAGTGGTAAATAATGGC 60.441 45.833 0.00 0.00 35.24 4.40
4366 14641 4.402474 GCCTTGAAGTGGTAAATAATGGCT 59.598 41.667 0.00 0.00 33.45 4.75
4367 14642 5.105351 GCCTTGAAGTGGTAAATAATGGCTT 60.105 40.000 0.00 0.00 33.45 4.35
4368 14643 6.574269 GCCTTGAAGTGGTAAATAATGGCTTT 60.574 38.462 0.00 0.00 33.45 3.51
4369 14644 6.813152 CCTTGAAGTGGTAAATAATGGCTTTG 59.187 38.462 0.00 0.00 0.00 2.77
4370 14645 7.309744 CCTTGAAGTGGTAAATAATGGCTTTGA 60.310 37.037 0.00 0.00 0.00 2.69
4443 14718 0.550432 TGCTAGCACCATGCCCATTA 59.450 50.000 14.93 0.00 46.52 1.90
4444 14719 1.145531 TGCTAGCACCATGCCCATTAT 59.854 47.619 14.93 0.00 46.52 1.28
4469 14744 4.215399 TGGTGTTAAGGATGAAGCTTTTCG 59.785 41.667 0.00 0.00 0.00 3.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 9.438291 CAAAACTAGTACAATGACTGAACAAAG 57.562 33.333 0.00 0.00 0.00 2.77
130 134 1.475751 CGCAACATGCCCTCCTTAGAT 60.476 52.381 0.00 0.00 41.12 1.98
131 135 0.107703 CGCAACATGCCCTCCTTAGA 60.108 55.000 0.00 0.00 41.12 2.10
261 266 1.270907 GGGTCATGTGTCCTCAGAGT 58.729 55.000 0.00 0.00 0.00 3.24
291 297 2.644299 TGGTCCAATCCAACTGATGAGT 59.356 45.455 0.00 0.00 34.24 3.41
332 343 0.321298 TCCGACTAACAAGGCTTGCC 60.321 55.000 26.45 2.97 0.00 4.52
394 405 7.308830 GCCGGCTGATCTTTTGAATAGATTAAT 60.309 37.037 22.15 0.00 32.64 1.40
422 438 0.586502 GAAATTCAAGGCTACGCGCG 60.587 55.000 30.96 30.96 40.44 6.86
693 1197 3.106552 CAGAGGAGAGAGCGACGG 58.893 66.667 0.00 0.00 0.00 4.79
735 1239 1.378124 CGAGGAAGGAGAGGACGACC 61.378 65.000 0.00 0.00 0.00 4.79
816 1329 7.039293 GGACTACCTTCTTCTTCTTCTTCTTCT 60.039 40.741 0.00 0.00 0.00 2.85
817 1330 7.094631 GGACTACCTTCTTCTTCTTCTTCTTC 58.905 42.308 0.00 0.00 0.00 2.87
818 1331 6.294843 CGGACTACCTTCTTCTTCTTCTTCTT 60.295 42.308 0.00 0.00 0.00 2.52
819 1332 5.184287 CGGACTACCTTCTTCTTCTTCTTCT 59.816 44.000 0.00 0.00 0.00 2.85
820 1333 5.404096 CGGACTACCTTCTTCTTCTTCTTC 58.596 45.833 0.00 0.00 0.00 2.87
821 1334 4.322123 GCGGACTACCTTCTTCTTCTTCTT 60.322 45.833 0.00 0.00 0.00 2.52
822 1335 3.193903 GCGGACTACCTTCTTCTTCTTCT 59.806 47.826 0.00 0.00 0.00 2.85
823 1336 3.193903 AGCGGACTACCTTCTTCTTCTTC 59.806 47.826 0.00 0.00 0.00 2.87
824 1337 3.056465 CAGCGGACTACCTTCTTCTTCTT 60.056 47.826 0.00 0.00 0.00 2.52
839 1352 0.249114 GCTAGCTAGGAACAGCGGAC 60.249 60.000 22.10 0.00 46.52 4.79
949 1490 1.621814 TCCGTTACTGGTCAAAGGGAG 59.378 52.381 0.00 0.00 35.35 4.30
1010 1563 2.046314 CAACTACCCACAGGCCGG 60.046 66.667 0.00 0.00 36.11 6.13
1137 1701 1.467734 CAACTGCAACAGGAGATGAGC 59.532 52.381 0.00 0.00 35.51 4.26
1184 3356 6.995091 AGGCTAAGATATGACAATTTGGAGAC 59.005 38.462 0.78 0.00 0.00 3.36
1268 3448 1.420430 TCCACGGTCTCCAGTTTTCT 58.580 50.000 0.00 0.00 0.00 2.52
1339 3524 6.569179 ACAAAGCGTCCACAATACTTTAAT 57.431 33.333 0.00 0.00 0.00 1.40
1355 3541 8.555166 TGTGTTTCTATTCTAAAAACAAAGCG 57.445 30.769 1.84 0.00 42.60 4.68
1396 3585 9.897744 GAAACTTGATTAATTGTTCATCTGACA 57.102 29.630 0.00 0.00 0.00 3.58
1521 5229 5.375417 TCACCACTTAATCTTTGTGCATG 57.625 39.130 0.00 0.00 0.00 4.06
1629 5416 5.269505 GCTAGTGCTCCTCTGAATCTAAA 57.730 43.478 0.00 0.00 36.03 1.85
1681 5590 9.742144 ACATATAGTAACAACCATTAACAACCA 57.258 29.630 0.00 0.00 0.00 3.67
2207 7217 8.052748 TGCATAACTCCTAACAAATGGTTCTAT 58.947 33.333 0.00 0.00 40.96 1.98
2237 7247 2.981859 ATGAAGTACAGCCCCTAACG 57.018 50.000 0.00 0.00 0.00 3.18
2607 9495 6.770746 TGGTGAAATACTAGTCTCACTACC 57.229 41.667 22.25 15.53 38.57 3.18
2716 9626 0.465460 ACGAAAGCCAGCCAGTGAAA 60.465 50.000 0.00 0.00 0.00 2.69
2923 9838 7.169813 TGACGCTGAGCAAGATATTAAATACAG 59.830 37.037 4.88 0.00 0.00 2.74
2979 9912 8.324306 TGAAGAGTAATCCAATTTCTCAGTCAT 58.676 33.333 8.42 0.00 38.62 3.06
3085 10018 2.030946 GCTAGAATAGGTGCAGCAAACG 59.969 50.000 19.63 0.70 39.70 3.60
3349 12629 1.285950 GACCCAAAGCTTCAACCGC 59.714 57.895 0.00 0.00 0.00 5.68
3603 12887 1.971481 TACCGAGCATACCGAGCTTA 58.029 50.000 0.00 0.00 43.58 3.09
3632 12916 1.138859 TGATTTGCCGTCCTGATCGAT 59.861 47.619 0.00 0.00 0.00 3.59
3645 12929 4.824289 ACACCCAAAGATGAATGATTTGC 58.176 39.130 0.00 0.00 33.55 3.68
3656 12940 2.358322 AAACCGTGACACCCAAAGAT 57.642 45.000 0.00 0.00 0.00 2.40
3799 13083 1.967319 TGAAACTCACAGGCTCAACC 58.033 50.000 0.00 0.00 39.61 3.77
3899 13189 7.484471 CTGTTTTCAGTTCATTCGCTAATTC 57.516 36.000 0.00 0.00 42.48 2.17
4004 14279 1.613317 CCTGACCACCGCCATCACTA 61.613 60.000 0.00 0.00 0.00 2.74
4021 14296 1.247567 CTGTCAAATTTGCCGACCCT 58.752 50.000 13.54 0.00 0.00 4.34
4028 14303 4.869861 ACAGGTCAAAACTGTCAAATTTGC 59.130 37.500 13.54 9.16 45.50 3.68
4037 14312 8.651859 ATGATTTCATCGACAGGTCAAAACTGT 61.652 37.037 0.00 0.00 41.19 3.55
4038 14313 4.811555 TTTCATCGACAGGTCAAAACTG 57.188 40.909 0.00 0.00 41.64 3.16
4041 14316 6.573664 AATGATTTCATCGACAGGTCAAAA 57.426 33.333 0.00 0.00 35.10 2.44
4042 14317 6.206438 TGAAATGATTTCATCGACAGGTCAAA 59.794 34.615 16.04 0.00 44.21 2.69
4043 14318 5.704978 TGAAATGATTTCATCGACAGGTCAA 59.295 36.000 16.04 0.00 44.21 3.18
4044 14319 5.244755 TGAAATGATTTCATCGACAGGTCA 58.755 37.500 16.04 0.00 44.21 4.02
4045 14320 5.801350 TGAAATGATTTCATCGACAGGTC 57.199 39.130 16.04 0.00 44.21 3.85
4064 14339 3.281727 AGGAGCAGTTCAGTTTGTGAA 57.718 42.857 0.00 0.00 43.26 3.18
4065 14340 4.415881 TTAGGAGCAGTTCAGTTTGTGA 57.584 40.909 0.00 0.00 0.00 3.58
4066 14341 5.695851 AATTAGGAGCAGTTCAGTTTGTG 57.304 39.130 0.00 0.00 0.00 3.33
4067 14342 6.715347 AAAATTAGGAGCAGTTCAGTTTGT 57.285 33.333 0.00 0.00 0.00 2.83
4090 14365 5.184864 TCAAAAAGGTCAGCTGAGTGAAAAA 59.815 36.000 18.89 0.00 0.00 1.94
4091 14366 4.704540 TCAAAAAGGTCAGCTGAGTGAAAA 59.295 37.500 18.89 0.00 0.00 2.29
4092 14367 4.269183 TCAAAAAGGTCAGCTGAGTGAAA 58.731 39.130 18.89 0.00 0.00 2.69
4093 14368 3.879295 CTCAAAAAGGTCAGCTGAGTGAA 59.121 43.478 18.89 0.00 30.98 3.18
4094 14369 3.118261 ACTCAAAAAGGTCAGCTGAGTGA 60.118 43.478 18.89 12.32 43.81 3.41
4095 14370 3.209410 ACTCAAAAAGGTCAGCTGAGTG 58.791 45.455 18.89 8.68 43.81 3.51
4096 14371 3.209410 CACTCAAAAAGGTCAGCTGAGT 58.791 45.455 18.89 4.41 45.81 3.41
4097 14372 2.551459 CCACTCAAAAAGGTCAGCTGAG 59.449 50.000 18.89 3.30 39.53 3.35
4098 14373 2.575532 CCACTCAAAAAGGTCAGCTGA 58.424 47.619 13.74 13.74 0.00 4.26
4099 14374 1.000938 GCCACTCAAAAAGGTCAGCTG 60.001 52.381 7.63 7.63 0.00 4.24
4100 14375 1.322442 GCCACTCAAAAAGGTCAGCT 58.678 50.000 0.00 0.00 0.00 4.24
4101 14376 0.040067 CGCCACTCAAAAAGGTCAGC 60.040 55.000 0.00 0.00 0.00 4.26
4102 14377 0.040067 GCGCCACTCAAAAAGGTCAG 60.040 55.000 0.00 0.00 0.00 3.51
4103 14378 1.452145 GGCGCCACTCAAAAAGGTCA 61.452 55.000 24.80 0.00 0.00 4.02
4104 14379 1.285950 GGCGCCACTCAAAAAGGTC 59.714 57.895 24.80 0.00 0.00 3.85
4105 14380 2.200337 GGGCGCCACTCAAAAAGGT 61.200 57.895 30.85 0.00 0.00 3.50
4106 14381 2.650778 GGGCGCCACTCAAAAAGG 59.349 61.111 30.85 0.00 0.00 3.11
4107 14382 2.255252 CGGGCGCCACTCAAAAAG 59.745 61.111 30.85 3.27 0.00 2.27
4108 14383 2.203224 TCGGGCGCCACTCAAAAA 60.203 55.556 30.85 0.05 0.00 1.94
4109 14384 2.975799 GTCGGGCGCCACTCAAAA 60.976 61.111 30.85 1.26 0.00 2.44
4110 14385 4.243008 TGTCGGGCGCCACTCAAA 62.243 61.111 30.85 5.09 0.00 2.69
4111 14386 4.980805 GTGTCGGGCGCCACTCAA 62.981 66.667 30.85 6.35 0.00 3.02
4124 14399 2.758770 TAGTGTGGCGCCTTCGTGTC 62.759 60.000 29.70 10.72 38.14 3.67
4125 14400 2.863346 TAGTGTGGCGCCTTCGTGT 61.863 57.895 29.70 9.85 38.14 4.49
4126 14401 2.048597 TAGTGTGGCGCCTTCGTG 60.049 61.111 29.70 0.00 38.14 4.35
4127 14402 2.048503 GTAGTGTGGCGCCTTCGT 60.049 61.111 29.70 12.53 38.14 3.85
4128 14403 1.019278 AATGTAGTGTGGCGCCTTCG 61.019 55.000 29.70 0.00 39.07 3.79
4129 14404 0.447801 CAATGTAGTGTGGCGCCTTC 59.552 55.000 29.70 20.58 0.00 3.46
4130 14405 0.250727 ACAATGTAGTGTGGCGCCTT 60.251 50.000 29.70 13.03 0.00 4.35
4131 14406 0.955428 CACAATGTAGTGTGGCGCCT 60.955 55.000 29.70 9.99 44.29 5.52
4132 14407 1.501741 CACAATGTAGTGTGGCGCC 59.498 57.895 22.73 22.73 44.29 6.53
4138 14413 1.577328 GGCGCTGCACAATGTAGTGT 61.577 55.000 7.64 0.00 41.61 3.55
4139 14414 1.135315 GGCGCTGCACAATGTAGTG 59.865 57.895 7.64 3.44 42.30 2.74
4140 14415 2.040544 GGGCGCTGCACAATGTAGT 61.041 57.895 7.64 0.00 32.42 2.73
4141 14416 2.793946 GGGCGCTGCACAATGTAG 59.206 61.111 7.64 0.00 33.01 2.74
4142 14417 3.124270 CGGGCGCTGCACAATGTA 61.124 61.111 7.64 0.00 0.00 2.29
4144 14419 4.465512 GTCGGGCGCTGCACAATG 62.466 66.667 7.64 0.00 0.00 2.82
4159 14434 3.418068 GTGCAGCGCCTGTCTGTC 61.418 66.667 2.29 0.00 33.43 3.51
4188 14463 4.832608 GGATCACCCGGGTGCGAC 62.833 72.222 43.20 33.00 45.04 5.19
4197 14472 7.282450 ACTGATTTAGTAATTTTCGGATCACCC 59.718 37.037 0.00 0.00 38.04 4.61
4198 14473 8.122952 CACTGATTTAGTAATTTTCGGATCACC 58.877 37.037 0.00 0.00 37.60 4.02
4199 14474 8.665685 ACACTGATTTAGTAATTTTCGGATCAC 58.334 33.333 0.00 0.00 37.60 3.06
4200 14475 8.664798 CACACTGATTTAGTAATTTTCGGATCA 58.335 33.333 0.00 0.00 37.60 2.92
4201 14476 7.640240 GCACACTGATTTAGTAATTTTCGGATC 59.360 37.037 0.00 0.00 37.60 3.36
4202 14477 7.120579 TGCACACTGATTTAGTAATTTTCGGAT 59.879 33.333 0.00 0.00 37.60 4.18
4203 14478 6.428465 TGCACACTGATTTAGTAATTTTCGGA 59.572 34.615 0.00 0.00 37.60 4.55
4204 14479 6.607689 TGCACACTGATTTAGTAATTTTCGG 58.392 36.000 0.00 0.00 37.60 4.30
4205 14480 7.269084 CACTGCACACTGATTTAGTAATTTTCG 59.731 37.037 0.00 0.00 37.60 3.46
4206 14481 7.061094 GCACTGCACACTGATTTAGTAATTTTC 59.939 37.037 0.00 0.00 37.60 2.29
4207 14482 6.863126 GCACTGCACACTGATTTAGTAATTTT 59.137 34.615 0.00 0.00 37.60 1.82
4208 14483 6.207417 AGCACTGCACACTGATTTAGTAATTT 59.793 34.615 3.30 0.00 37.60 1.82
4209 14484 5.707298 AGCACTGCACACTGATTTAGTAATT 59.293 36.000 3.30 0.00 37.60 1.40
4210 14485 5.248640 AGCACTGCACACTGATTTAGTAAT 58.751 37.500 3.30 0.00 37.60 1.89
4211 14486 4.641396 AGCACTGCACACTGATTTAGTAA 58.359 39.130 3.30 0.00 37.60 2.24
4212 14487 4.271696 AGCACTGCACACTGATTTAGTA 57.728 40.909 3.30 0.00 37.60 1.82
4213 14488 3.131709 AGCACTGCACACTGATTTAGT 57.868 42.857 3.30 0.00 41.36 2.24
4214 14489 3.499537 TCAAGCACTGCACACTGATTTAG 59.500 43.478 3.30 0.00 0.00 1.85
4215 14490 3.475575 TCAAGCACTGCACACTGATTTA 58.524 40.909 3.30 0.00 0.00 1.40
4216 14491 2.292569 CTCAAGCACTGCACACTGATTT 59.707 45.455 3.30 0.00 0.00 2.17
4217 14492 1.878088 CTCAAGCACTGCACACTGATT 59.122 47.619 3.30 0.00 0.00 2.57
4218 14493 1.071228 TCTCAAGCACTGCACACTGAT 59.929 47.619 3.30 0.00 0.00 2.90
4219 14494 0.465287 TCTCAAGCACTGCACACTGA 59.535 50.000 3.30 0.00 0.00 3.41
4220 14495 0.866427 CTCTCAAGCACTGCACACTG 59.134 55.000 3.30 0.00 0.00 3.66
4221 14496 3.302375 CTCTCAAGCACTGCACACT 57.698 52.632 3.30 0.00 0.00 3.55
4239 14514 4.165507 ACTGTATAGTGTGGCGCCTAGC 62.166 54.545 29.70 17.93 39.66 3.42
4240 14515 1.681793 ACTGTATAGTGTGGCGCCTAG 59.318 52.381 29.70 13.13 35.34 3.02
4241 14516 1.771565 ACTGTATAGTGTGGCGCCTA 58.228 50.000 29.70 14.39 35.34 3.93
4242 14517 2.591915 ACTGTATAGTGTGGCGCCT 58.408 52.632 29.70 9.99 35.34 5.52
4251 14526 3.814283 GCCTAGACGCTACACTGTATAGT 59.186 47.826 0.00 0.00 37.75 2.12
4252 14527 3.120615 CGCCTAGACGCTACACTGTATAG 60.121 52.174 0.00 0.00 31.41 1.31
4253 14528 2.804527 CGCCTAGACGCTACACTGTATA 59.195 50.000 0.00 0.00 0.00 1.47
4254 14529 1.602851 CGCCTAGACGCTACACTGTAT 59.397 52.381 0.00 0.00 0.00 2.29
4255 14530 1.012086 CGCCTAGACGCTACACTGTA 58.988 55.000 0.00 0.00 0.00 2.74
4256 14531 0.959372 ACGCCTAGACGCTACACTGT 60.959 55.000 0.00 0.00 36.19 3.55
4257 14532 0.170561 AACGCCTAGACGCTACACTG 59.829 55.000 0.00 0.00 36.19 3.66
4258 14533 0.170561 CAACGCCTAGACGCTACACT 59.829 55.000 0.00 0.00 36.19 3.55
4259 14534 1.411493 GCAACGCCTAGACGCTACAC 61.411 60.000 0.00 0.00 36.19 2.90
4260 14535 1.153901 GCAACGCCTAGACGCTACA 60.154 57.895 0.00 0.00 36.19 2.74
4261 14536 0.527817 ATGCAACGCCTAGACGCTAC 60.528 55.000 0.00 0.00 36.19 3.58
4262 14537 0.174845 AATGCAACGCCTAGACGCTA 59.825 50.000 0.00 0.00 36.19 4.26
4263 14538 0.174845 TAATGCAACGCCTAGACGCT 59.825 50.000 0.00 0.00 36.19 5.07
4264 14539 0.577269 CTAATGCAACGCCTAGACGC 59.423 55.000 0.00 0.00 36.19 5.19
4265 14540 1.588404 CACTAATGCAACGCCTAGACG 59.412 52.381 0.00 0.00 39.50 4.18
4266 14541 1.933853 CCACTAATGCAACGCCTAGAC 59.066 52.381 0.00 0.00 0.00 2.59
4267 14542 1.553248 ACCACTAATGCAACGCCTAGA 59.447 47.619 0.00 0.00 0.00 2.43
4268 14543 2.024176 ACCACTAATGCAACGCCTAG 57.976 50.000 0.00 0.00 0.00 3.02
4269 14544 2.080693 CAACCACTAATGCAACGCCTA 58.919 47.619 0.00 0.00 0.00 3.93
4270 14545 0.881118 CAACCACTAATGCAACGCCT 59.119 50.000 0.00 0.00 0.00 5.52
4271 14546 0.732538 GCAACCACTAATGCAACGCC 60.733 55.000 0.00 0.00 42.12 5.68
4272 14547 0.240945 AGCAACCACTAATGCAACGC 59.759 50.000 0.00 0.00 44.95 4.84
4273 14548 2.704725 AAGCAACCACTAATGCAACG 57.295 45.000 0.00 0.00 44.95 4.10
4274 14549 7.042119 ACAAAATAAAGCAACCACTAATGCAAC 60.042 33.333 0.00 0.00 44.95 4.17
4275 14550 6.989169 ACAAAATAAAGCAACCACTAATGCAA 59.011 30.769 0.00 0.00 44.95 4.08
4276 14551 6.520272 ACAAAATAAAGCAACCACTAATGCA 58.480 32.000 0.00 0.00 44.95 3.96
4277 14552 7.812669 ACTACAAAATAAAGCAACCACTAATGC 59.187 33.333 0.00 0.00 42.87 3.56
4278 14553 9.128107 CACTACAAAATAAAGCAACCACTAATG 57.872 33.333 0.00 0.00 0.00 1.90
4279 14554 8.303876 CCACTACAAAATAAAGCAACCACTAAT 58.696 33.333 0.00 0.00 0.00 1.73
4280 14555 7.285858 ACCACTACAAAATAAAGCAACCACTAA 59.714 33.333 0.00 0.00 0.00 2.24
4281 14556 6.773685 ACCACTACAAAATAAAGCAACCACTA 59.226 34.615 0.00 0.00 0.00 2.74
4282 14557 5.596772 ACCACTACAAAATAAAGCAACCACT 59.403 36.000 0.00 0.00 0.00 4.00
4283 14558 5.838529 ACCACTACAAAATAAAGCAACCAC 58.161 37.500 0.00 0.00 0.00 4.16
4284 14559 7.584122 TTACCACTACAAAATAAAGCAACCA 57.416 32.000 0.00 0.00 0.00 3.67
4294 14569 8.589338 TGGTTGCATTATTTACCACTACAAAAT 58.411 29.630 1.46 0.00 35.82 1.82
4295 14570 7.952671 TGGTTGCATTATTTACCACTACAAAA 58.047 30.769 1.46 0.00 35.82 2.44
4296 14571 7.526142 TGGTTGCATTATTTACCACTACAAA 57.474 32.000 1.46 0.00 35.82 2.83
4303 14578 6.242396 ACACTAGTGGTTGCATTATTTACCA 58.758 36.000 26.12 1.46 38.29 3.25
4304 14579 6.753107 ACACTAGTGGTTGCATTATTTACC 57.247 37.500 26.12 0.00 34.19 2.85
4305 14580 9.716507 CATTACACTAGTGGTTGCATTATTTAC 57.283 33.333 26.12 0.00 34.19 2.01
4306 14581 8.898761 CCATTACACTAGTGGTTGCATTATTTA 58.101 33.333 26.12 2.82 31.51 1.40
4307 14582 7.396055 ACCATTACACTAGTGGTTGCATTATTT 59.604 33.333 26.12 3.80 45.24 1.40
4308 14583 6.889722 ACCATTACACTAGTGGTTGCATTATT 59.110 34.615 26.12 4.31 45.24 1.40
4309 14584 6.318648 CACCATTACACTAGTGGTTGCATTAT 59.681 38.462 26.12 5.03 45.24 1.28
4310 14585 5.645929 CACCATTACACTAGTGGTTGCATTA 59.354 40.000 26.12 5.48 45.24 1.90
4311 14586 4.458989 CACCATTACACTAGTGGTTGCATT 59.541 41.667 26.12 6.49 45.24 3.56
4312 14587 4.009675 CACCATTACACTAGTGGTTGCAT 58.990 43.478 26.12 7.21 45.24 3.96
4313 14588 3.407698 CACCATTACACTAGTGGTTGCA 58.592 45.455 26.12 6.06 45.24 4.08
4314 14589 2.747446 CCACCATTACACTAGTGGTTGC 59.253 50.000 26.12 0.00 45.24 4.17
4315 14590 4.280436 TCCACCATTACACTAGTGGTTG 57.720 45.455 26.12 18.38 45.24 3.77
4316 14591 4.986054 TTCCACCATTACACTAGTGGTT 57.014 40.909 26.12 9.42 45.24 3.67
4319 14594 5.586243 CCAGAATTCCACCATTACACTAGTG 59.414 44.000 21.44 21.44 0.00 2.74
4320 14595 5.745227 CCAGAATTCCACCATTACACTAGT 58.255 41.667 0.65 0.00 0.00 2.57
4321 14596 4.576463 GCCAGAATTCCACCATTACACTAG 59.424 45.833 0.65 0.00 0.00 2.57
4322 14597 4.523083 GCCAGAATTCCACCATTACACTA 58.477 43.478 0.65 0.00 0.00 2.74
4323 14598 3.356290 GCCAGAATTCCACCATTACACT 58.644 45.455 0.65 0.00 0.00 3.55
4324 14599 2.427095 GGCCAGAATTCCACCATTACAC 59.573 50.000 0.00 0.00 0.00 2.90
4325 14600 2.311542 AGGCCAGAATTCCACCATTACA 59.688 45.455 5.01 0.00 0.00 2.41
4326 14601 3.018423 AGGCCAGAATTCCACCATTAC 57.982 47.619 5.01 0.00 0.00 1.89
4327 14602 3.011144 TCAAGGCCAGAATTCCACCATTA 59.989 43.478 5.01 0.00 0.00 1.90
4328 14603 2.181975 CAAGGCCAGAATTCCACCATT 58.818 47.619 5.01 0.00 0.00 3.16
4329 14604 1.358787 TCAAGGCCAGAATTCCACCAT 59.641 47.619 5.01 0.00 0.00 3.55
4330 14605 0.776810 TCAAGGCCAGAATTCCACCA 59.223 50.000 5.01 0.00 0.00 4.17
4331 14606 1.821136 CTTCAAGGCCAGAATTCCACC 59.179 52.381 5.01 1.22 0.00 4.61
4332 14607 2.229784 CACTTCAAGGCCAGAATTCCAC 59.770 50.000 5.01 0.00 0.00 4.02
4333 14608 2.517959 CACTTCAAGGCCAGAATTCCA 58.482 47.619 5.01 0.00 0.00 3.53
4334 14609 1.821136 CCACTTCAAGGCCAGAATTCC 59.179 52.381 5.01 0.00 0.00 3.01
4335 14610 2.519013 ACCACTTCAAGGCCAGAATTC 58.481 47.619 5.01 0.00 0.00 2.17
4336 14611 2.683211 ACCACTTCAAGGCCAGAATT 57.317 45.000 5.01 0.00 0.00 2.17
4337 14612 3.806949 TTACCACTTCAAGGCCAGAAT 57.193 42.857 5.01 0.00 0.00 2.40
4338 14613 3.586470 TTTACCACTTCAAGGCCAGAA 57.414 42.857 5.01 8.10 0.00 3.02
4339 14614 3.806949 ATTTACCACTTCAAGGCCAGA 57.193 42.857 5.01 0.00 0.00 3.86
4340 14615 5.163519 CCATTATTTACCACTTCAAGGCCAG 60.164 44.000 5.01 0.00 0.00 4.85
4341 14616 4.709397 CCATTATTTACCACTTCAAGGCCA 59.291 41.667 5.01 0.00 0.00 5.36
4342 14617 4.441495 GCCATTATTTACCACTTCAAGGCC 60.441 45.833 0.00 0.00 0.00 5.19
4343 14618 4.402474 AGCCATTATTTACCACTTCAAGGC 59.598 41.667 0.00 0.00 37.52 4.35
4344 14619 6.530019 AAGCCATTATTTACCACTTCAAGG 57.470 37.500 0.00 0.00 0.00 3.61
4345 14620 7.601856 TCAAAGCCATTATTTACCACTTCAAG 58.398 34.615 0.00 0.00 0.00 3.02
4346 14621 7.531857 TCAAAGCCATTATTTACCACTTCAA 57.468 32.000 0.00 0.00 0.00 2.69
4347 14622 7.450014 TCTTCAAAGCCATTATTTACCACTTCA 59.550 33.333 0.00 0.00 0.00 3.02
4348 14623 7.826690 TCTTCAAAGCCATTATTTACCACTTC 58.173 34.615 0.00 0.00 0.00 3.01
4349 14624 7.775053 TCTTCAAAGCCATTATTTACCACTT 57.225 32.000 0.00 0.00 0.00 3.16
4350 14625 7.961326 ATCTTCAAAGCCATTATTTACCACT 57.039 32.000 0.00 0.00 0.00 4.00
4358 14633 9.638176 ACTTGAGATTATCTTCAAAGCCATTAT 57.362 29.630 0.00 0.00 0.00 1.28
4360 14635 7.951347 ACTTGAGATTATCTTCAAAGCCATT 57.049 32.000 0.00 0.00 0.00 3.16
4361 14636 9.466497 TTTACTTGAGATTATCTTCAAAGCCAT 57.534 29.630 0.00 0.00 0.00 4.40
4362 14637 8.730680 GTTTACTTGAGATTATCTTCAAAGCCA 58.269 33.333 0.00 0.00 0.00 4.75
4363 14638 8.951243 AGTTTACTTGAGATTATCTTCAAAGCC 58.049 33.333 0.00 0.00 0.00 4.35
4443 14718 7.201732 CGAAAAGCTTCATCCTTAACACCATAT 60.202 37.037 0.00 0.00 0.00 1.78
4444 14719 6.093495 CGAAAAGCTTCATCCTTAACACCATA 59.907 38.462 0.00 0.00 0.00 2.74
4469 14744 2.094854 CCAAACCTCTCTCAAAGCATGC 60.095 50.000 10.51 10.51 0.00 4.06
4527 14802 1.066430 TCGTGTCCCATTACCAGCTTC 60.066 52.381 0.00 0.00 0.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.