Multiple sequence alignment - TraesCS7B01G010100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G010100 chr7B 100.000 4511 0 0 1 4511 6176469 6180979 0.000000e+00 8331.0
1 TraesCS7B01G010100 chr7B 82.569 545 65 13 3986 4503 6373685 6374226 1.910000e-123 453.0
2 TraesCS7B01G010100 chr7B 81.466 464 62 7 4052 4497 6033429 6033886 4.290000e-95 359.0
3 TraesCS7B01G010100 chr7B 81.681 464 36 22 238 670 462460506 462460061 1.550000e-89 340.0
4 TraesCS7B01G010100 chr7B 89.879 247 15 4 736 975 462459874 462459631 4.380000e-80 309.0
5 TraesCS7B01G010100 chr7D 89.582 3782 254 70 736 4435 64696421 64700144 0.000000e+00 4673.0
6 TraesCS7B01G010100 chr7D 81.523 801 34 29 1 727 64695499 64696259 5.100000e-154 555.0
7 TraesCS7B01G010100 chr7D 82.396 551 67 13 3980 4503 64735303 64735850 1.910000e-123 453.0
8 TraesCS7B01G010100 chr7D 92.500 80 6 0 4432 4511 64700165 64700244 1.030000e-21 115.0
9 TraesCS7B01G010100 chr7A 88.103 2320 165 56 759 3026 68858587 68860847 0.000000e+00 2652.0
10 TraesCS7B01G010100 chr7A 91.678 1514 70 18 3045 4503 68860897 68862409 0.000000e+00 2047.0
11 TraesCS7B01G010100 chr7A 85.812 881 90 20 2949 3817 68898973 68899830 0.000000e+00 902.0
12 TraesCS7B01G010100 chr7A 81.609 696 27 27 104 737 68857710 68858366 2.440000e-132 483.0
13 TraesCS7B01G010100 chr7A 85.526 456 50 9 3980 4424 68900580 68901030 3.180000e-126 462.0
14 TraesCS7B01G010100 chr4B 84.091 484 61 9 1811 2289 368832482 368832954 1.910000e-123 453.0
15 TraesCS7B01G010100 chr3B 82.436 427 32 20 227 619 680861363 680860946 2.600000e-87 333.0
16 TraesCS7B01G010100 chr3B 90.456 241 14 3 741 975 680860143 680859906 4.380000e-80 309.0
17 TraesCS7B01G010100 chr3B 87.629 97 5 6 212 303 735796792 735796698 6.170000e-19 106.0
18 TraesCS7B01G010100 chr3B 91.026 78 4 3 227 302 736644425 736644349 7.980000e-18 102.0
19 TraesCS7B01G010100 chr6B 95.522 67 3 0 237 303 482307835 482307901 1.720000e-19 108.0
20 TraesCS7B01G010100 chr6B 93.846 65 4 0 239 303 648632968 648633032 1.030000e-16 99.0
21 TraesCS7B01G010100 chr1B 76.522 230 33 9 1271 1482 44937091 44936865 6.170000e-19 106.0
22 TraesCS7B01G010100 chr1B 88.636 88 7 3 217 303 647187182 647187267 2.220000e-18 104.0
23 TraesCS7B01G010100 chr2B 90.625 64 6 0 239 302 752289760 752289697 8.040000e-13 86.1
24 TraesCS7B01G010100 chr2B 88.235 51 6 0 366 416 30393155 30393105 1.350000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G010100 chr7B 6176469 6180979 4510 False 8331.000000 8331 100.000000 1 4511 1 chr7B.!!$F2 4510
1 TraesCS7B01G010100 chr7B 6373685 6374226 541 False 453.000000 453 82.569000 3986 4503 1 chr7B.!!$F3 517
2 TraesCS7B01G010100 chr7B 462459631 462460506 875 True 324.500000 340 85.780000 238 975 2 chr7B.!!$R1 737
3 TraesCS7B01G010100 chr7D 64695499 64700244 4745 False 1781.000000 4673 87.868333 1 4511 3 chr7D.!!$F2 4510
4 TraesCS7B01G010100 chr7D 64735303 64735850 547 False 453.000000 453 82.396000 3980 4503 1 chr7D.!!$F1 523
5 TraesCS7B01G010100 chr7A 68857710 68862409 4699 False 1727.333333 2652 87.130000 104 4503 3 chr7A.!!$F1 4399
6 TraesCS7B01G010100 chr7A 68898973 68901030 2057 False 682.000000 902 85.669000 2949 4424 2 chr7A.!!$F2 1475
7 TraesCS7B01G010100 chr3B 680859906 680861363 1457 True 321.000000 333 86.446000 227 975 2 chr3B.!!$R3 748

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
166 195 0.107752 GCAAGGGCAGAGAAGGAGAG 60.108 60.0 0.00 0.0 40.72 3.20 F
1093 2165 0.042281 GGTACCACCCTACCTCCACT 59.958 60.0 7.15 0.0 34.34 4.00 F
1138 2219 0.103390 TCACCACGCTTTCGACAAGA 59.897 50.0 10.34 0.0 39.41 3.02 F
1196 2280 0.472161 TTTACCCCAAACCCCCAAGC 60.472 55.0 0.00 0.0 0.00 4.01 F
1952 3072 0.658897 TTTTCTGCCACGTCGGTTTC 59.341 50.0 0.00 0.0 36.97 2.78 F
2752 3891 0.687354 TCCTTGGGCTGACTCTGTTC 59.313 55.0 0.00 0.0 0.00 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1471 2571 0.038744 CAGAATCCAGGCCAACACCT 59.961 55.000 5.01 0.0 42.30 4.00 R
2352 3484 0.466124 GAGTAGCCGCCCAATCTTCT 59.534 55.000 0.00 0.0 0.00 2.85 R
2370 3502 1.065358 GAAACGCGTTCTGAATCCGA 58.935 50.000 26.77 0.0 33.03 4.55 R
3075 4254 1.227823 CCTCCACTGCAAACGGACA 60.228 57.895 0.00 0.0 0.00 4.02 R
3246 4429 0.102300 GGTTTGTGCTGGTGTTGTCC 59.898 55.000 0.00 0.0 0.00 4.02 R
4045 5860 0.400213 GTGGTTCATCCCTGTGGTCA 59.600 55.000 0.00 0.0 34.77 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
85 92 0.747283 CAGCCAGCCAAGGATCAGAC 60.747 60.000 0.00 0.00 0.00 3.51
86 93 1.452833 GCCAGCCAAGGATCAGACC 60.453 63.158 0.00 0.00 0.00 3.85
87 94 1.225704 CCAGCCAAGGATCAGACCC 59.774 63.158 0.00 0.00 0.00 4.46
88 95 1.277580 CCAGCCAAGGATCAGACCCT 61.278 60.000 0.00 0.00 35.03 4.34
102 109 3.039526 CCCTCCCTCCCTCCCTCT 61.040 72.222 0.00 0.00 0.00 3.69
166 195 0.107752 GCAAGGGCAGAGAAGGAGAG 60.108 60.000 0.00 0.00 40.72 3.20
167 196 0.107752 CAAGGGCAGAGAAGGAGAGC 60.108 60.000 0.00 0.00 0.00 4.09
196 225 1.068121 CACCTTTCCACCTTCCCTCT 58.932 55.000 0.00 0.00 0.00 3.69
202 231 3.083997 CACCTTCCCTCTCCCCCG 61.084 72.222 0.00 0.00 0.00 5.73
222 251 4.394712 CCACCACCTCACCTCCGC 62.395 72.222 0.00 0.00 0.00 5.54
223 252 3.314331 CACCACCTCACCTCCGCT 61.314 66.667 0.00 0.00 0.00 5.52
288 317 1.218316 GGATCCGTCCGTTGCTTCT 59.782 57.895 0.00 0.00 34.13 2.85
411 477 1.536284 GCAGGTACCGCTACTTAGCTG 60.536 57.143 17.83 2.64 46.85 4.24
413 479 0.249363 GGTACCGCTACTTAGCTGCC 60.249 60.000 0.00 0.00 46.85 4.85
414 480 0.745468 GTACCGCTACTTAGCTGCCT 59.255 55.000 6.68 0.00 46.85 4.75
584 655 4.071423 TGATGCGATTTGGTTCTCAAGAA 58.929 39.130 0.00 0.00 36.62 2.52
701 793 5.106442 GCCCCTGTTAATTGTTTTATTCGG 58.894 41.667 0.00 0.00 0.00 4.30
794 1855 3.679389 AGCCATGTTTGTCTTCCTACAG 58.321 45.455 0.00 0.00 0.00 2.74
855 1917 0.247736 ATCTTGGAGACGCTGTGACC 59.752 55.000 0.00 0.00 0.00 4.02
860 1922 1.149148 GGAGACGCTGTGACCTTTTC 58.851 55.000 0.00 0.00 0.00 2.29
883 1949 3.381590 GTCTCACCCCAAATAAATCCTGC 59.618 47.826 0.00 0.00 0.00 4.85
884 1950 2.358898 CTCACCCCAAATAAATCCTGCG 59.641 50.000 0.00 0.00 0.00 5.18
888 1954 3.697542 ACCCCAAATAAATCCTGCGTAAC 59.302 43.478 0.00 0.00 0.00 2.50
1080 2149 0.665835 CAAAGCACGCAAAGGTACCA 59.334 50.000 15.94 0.00 0.00 3.25
1083 2155 2.622962 GCACGCAAAGGTACCACCC 61.623 63.158 15.94 0.00 39.75 4.61
1085 2157 0.322322 CACGCAAAGGTACCACCCTA 59.678 55.000 15.94 0.00 39.75 3.53
1093 2165 0.042281 GGTACCACCCTACCTCCACT 59.958 60.000 7.15 0.00 34.34 4.00
1100 2172 0.747255 CCCTACCTCCACTCACATCG 59.253 60.000 0.00 0.00 0.00 3.84
1101 2173 1.475403 CCTACCTCCACTCACATCGT 58.525 55.000 0.00 0.00 0.00 3.73
1103 2175 1.405821 CTACCTCCACTCACATCGTCC 59.594 57.143 0.00 0.00 0.00 4.79
1104 2176 1.258445 ACCTCCACTCACATCGTCCC 61.258 60.000 0.00 0.00 0.00 4.46
1107 2179 2.573869 CACTCACATCGTCCCGCT 59.426 61.111 0.00 0.00 0.00 5.52
1109 2181 0.670546 CACTCACATCGTCCCGCTTT 60.671 55.000 0.00 0.00 0.00 3.51
1111 2192 0.389817 CTCACATCGTCCCGCTTTCA 60.390 55.000 0.00 0.00 0.00 2.69
1114 2195 1.468520 CACATCGTCCCGCTTTCATTT 59.531 47.619 0.00 0.00 0.00 2.32
1117 2198 2.981400 TCGTCCCGCTTTCATTTTTC 57.019 45.000 0.00 0.00 0.00 2.29
1119 2200 2.882137 TCGTCCCGCTTTCATTTTTCTT 59.118 40.909 0.00 0.00 0.00 2.52
1122 2203 3.981416 GTCCCGCTTTCATTTTTCTTCAC 59.019 43.478 0.00 0.00 0.00 3.18
1123 2204 3.005367 TCCCGCTTTCATTTTTCTTCACC 59.995 43.478 0.00 0.00 0.00 4.02
1124 2205 3.243704 CCCGCTTTCATTTTTCTTCACCA 60.244 43.478 0.00 0.00 0.00 4.17
1126 2207 3.421888 CGCTTTCATTTTTCTTCACCACG 59.578 43.478 0.00 0.00 0.00 4.94
1129 2210 4.647424 TTCATTTTTCTTCACCACGCTT 57.353 36.364 0.00 0.00 0.00 4.68
1134 2215 1.214367 TTCTTCACCACGCTTTCGAC 58.786 50.000 0.00 0.00 39.41 4.20
1137 2218 0.934496 TTCACCACGCTTTCGACAAG 59.066 50.000 0.00 0.00 39.41 3.16
1138 2219 0.103390 TCACCACGCTTTCGACAAGA 59.897 50.000 10.34 0.00 39.41 3.02
1139 2220 0.508641 CACCACGCTTTCGACAAGAG 59.491 55.000 10.34 9.45 39.41 2.85
1145 2229 3.053455 ACGCTTTCGACAAGAGAAGAAG 58.947 45.455 14.40 1.82 39.41 2.85
1159 2243 7.824779 ACAAGAGAAGAAGAATATTACCACCAC 59.175 37.037 0.00 0.00 0.00 4.16
1170 2254 9.185680 AGAATATTACCACCACCAATCTTTAAC 57.814 33.333 0.00 0.00 0.00 2.01
1189 2273 1.709115 ACTCTCCCTTTACCCCAAACC 59.291 52.381 0.00 0.00 0.00 3.27
1190 2274 1.005569 CTCTCCCTTTACCCCAAACCC 59.994 57.143 0.00 0.00 0.00 4.11
1196 2280 0.472161 TTTACCCCAAACCCCCAAGC 60.472 55.000 0.00 0.00 0.00 4.01
1198 2282 4.247130 CCCCAAACCCCCAAGCCA 62.247 66.667 0.00 0.00 0.00 4.75
1207 2291 3.384532 CCCAAGCCATGCACACCC 61.385 66.667 0.00 0.00 0.00 4.61
1208 2292 3.751246 CCAAGCCATGCACACCCG 61.751 66.667 0.00 0.00 0.00 5.28
1211 2295 3.196207 AAGCCATGCACACCCGACT 62.196 57.895 0.00 0.00 0.00 4.18
1213 2297 2.347114 CCATGCACACCCGACTCA 59.653 61.111 0.00 0.00 0.00 3.41
1218 2305 2.094659 GCACACCCGACTCATCACG 61.095 63.158 0.00 0.00 0.00 4.35
1227 2320 1.639298 GACTCATCACGGCCTTGCAC 61.639 60.000 3.88 0.00 0.00 4.57
1244 2337 1.668151 ACGCCTTCGAAGCAACCTC 60.668 57.895 19.99 3.21 39.41 3.85
1269 2362 5.649395 AGATGAAAGAAAAAGATGCCATCGA 59.351 36.000 0.00 0.00 35.60 3.59
1314 2407 2.923426 TTATTCAGCAGCGAGGGCCG 62.923 60.000 0.00 0.00 41.24 6.13
1328 2421 2.349755 GCCGGGGCAGACAAACTA 59.650 61.111 2.18 0.00 41.49 2.24
1330 2423 1.740296 CCGGGGCAGACAAACTACG 60.740 63.158 0.00 0.00 0.00 3.51
1384 2484 5.127682 GTGGCAATCATAATGGAGGAAAGTT 59.872 40.000 0.00 0.00 0.00 2.66
1445 2545 1.552337 AGGTGTCATCGATGCTGACTT 59.448 47.619 20.81 9.81 42.78 3.01
1481 2581 1.071699 TGTCTGAGTTAGGTGTTGGCC 59.928 52.381 0.00 0.00 0.00 5.36
1636 2741 7.639039 TGTGATAAACATCGAAATATTGCTCC 58.361 34.615 0.00 0.00 32.36 4.70
1637 2742 7.498900 TGTGATAAACATCGAAATATTGCTCCT 59.501 33.333 0.00 0.00 32.36 3.69
1639 2744 8.344831 TGATAAACATCGAAATATTGCTCCTTG 58.655 33.333 0.00 0.00 0.00 3.61
1640 2745 5.505173 AACATCGAAATATTGCTCCTTGG 57.495 39.130 0.00 0.00 0.00 3.61
1782 2896 4.753516 TTCAGAGACTTGTGTTCCTTCA 57.246 40.909 0.00 0.00 0.00 3.02
1825 2940 2.474856 CGGTGTGTGTGTGTGTACAAAC 60.475 50.000 9.40 9.40 43.92 2.93
1842 2957 5.612725 ACAAACCTCATTTTTGGACATGT 57.387 34.783 0.00 0.00 38.12 3.21
1845 2961 4.503741 ACCTCATTTTTGGACATGTTCG 57.496 40.909 0.00 0.00 0.00 3.95
1851 2967 4.927978 TTTTTGGACATGTTCGTTGGAT 57.072 36.364 0.00 0.00 0.00 3.41
1854 2970 3.133141 TGGACATGTTCGTTGGATTGA 57.867 42.857 0.00 0.00 0.00 2.57
1928 3047 5.476945 ACTGTTGAATTGGTCCTTCATAACC 59.523 40.000 0.00 0.00 32.94 2.85
1929 3048 4.770010 TGTTGAATTGGTCCTTCATAACCC 59.230 41.667 0.00 0.00 34.47 4.11
1952 3072 0.658897 TTTTCTGCCACGTCGGTTTC 59.341 50.000 0.00 0.00 36.97 2.78
2006 3134 5.076182 TCATTCCTTGTGGTGCAAAATAGA 58.924 37.500 0.00 0.00 36.53 1.98
2007 3135 5.183713 TCATTCCTTGTGGTGCAAAATAGAG 59.816 40.000 0.00 0.00 36.53 2.43
2044 3172 1.312815 ACTCTGGCACAAACTTGCTC 58.687 50.000 0.00 0.00 42.56 4.26
2046 3174 2.104792 ACTCTGGCACAAACTTGCTCTA 59.895 45.455 0.00 0.00 42.56 2.43
2047 3175 2.740981 CTCTGGCACAAACTTGCTCTAG 59.259 50.000 0.00 0.00 42.56 2.43
2050 3178 4.065088 CTGGCACAAACTTGCTCTAGTAA 58.935 43.478 0.00 0.00 42.56 2.24
2051 3179 4.456535 TGGCACAAACTTGCTCTAGTAAA 58.543 39.130 0.00 0.00 42.56 2.01
2089 3217 2.749076 TGCTGACTACATTCCATTGTGC 59.251 45.455 0.00 0.00 0.00 4.57
2103 3231 3.737266 CCATTGTGCTCAACATTGACAAC 59.263 43.478 2.82 0.00 40.90 3.32
2104 3232 4.361420 CATTGTGCTCAACATTGACAACA 58.639 39.130 2.82 1.51 40.90 3.33
2169 3299 4.339814 TGTTATTGGTTTTCACCTGGACAC 59.660 41.667 0.00 0.00 44.61 3.67
2197 3327 4.891756 ACATCCTTGGATGAATTAAGCCAG 59.108 41.667 29.81 5.41 36.48 4.85
2198 3328 4.591321 TCCTTGGATGAATTAAGCCAGT 57.409 40.909 0.00 0.00 0.00 4.00
2199 3329 4.272489 TCCTTGGATGAATTAAGCCAGTG 58.728 43.478 0.00 0.00 0.00 3.66
2201 3331 4.891756 CCTTGGATGAATTAAGCCAGTGAT 59.108 41.667 0.00 0.00 0.00 3.06
2202 3332 5.221185 CCTTGGATGAATTAAGCCAGTGATG 60.221 44.000 0.00 0.00 0.00 3.07
2205 3335 5.951148 TGGATGAATTAAGCCAGTGATGAAA 59.049 36.000 0.00 0.00 0.00 2.69
2215 3345 9.995003 TTAAGCCAGTGATGAAAATTTACAAAT 57.005 25.926 0.00 0.00 0.00 2.32
2236 3368 9.321562 ACAAATGATTAAATTGCATTGATCCTC 57.678 29.630 3.23 0.00 32.96 3.71
2251 3383 4.012374 TGATCCTCACATGCTTCCTTTTC 58.988 43.478 0.00 0.00 0.00 2.29
2268 3400 3.439857 TTTCCATAGAAGGTTGCTGCT 57.560 42.857 0.00 0.00 32.35 4.24
2292 3424 1.607178 CAATGGAGCCAACCTGCCA 60.607 57.895 0.00 0.00 34.45 4.92
2340 3472 1.220206 CAGCAGCGACCCTGAAGAT 59.780 57.895 0.00 0.00 44.64 2.40
2352 3484 3.455910 ACCCTGAAGATAATGCAGCACTA 59.544 43.478 0.00 0.00 0.00 2.74
2364 3496 1.293924 CAGCACTAGAAGATTGGGCG 58.706 55.000 0.00 0.00 0.00 6.13
2370 3502 1.689273 CTAGAAGATTGGGCGGCTACT 59.311 52.381 9.56 0.00 0.00 2.57
2414 3546 3.000925 CGCCACAAGGTAATATCGACAAC 59.999 47.826 0.00 0.00 37.19 3.32
2416 3548 4.270325 GCCACAAGGTAATATCGACAACTC 59.730 45.833 0.00 0.00 37.19 3.01
2417 3549 4.503007 CCACAAGGTAATATCGACAACTCG 59.497 45.833 0.00 0.00 41.65 4.18
2434 3572 3.132925 ACTCGCCGCAAAAACTTTACTA 58.867 40.909 0.00 0.00 0.00 1.82
2438 3576 6.073112 ACTCGCCGCAAAAACTTTACTATTTA 60.073 34.615 0.00 0.00 0.00 1.40
2444 3582 8.782327 CCGCAAAAACTTTACTATTTAATCGAC 58.218 33.333 0.00 0.00 0.00 4.20
2464 3602 6.452242 TCGACCGAATATGTAACATATTGCT 58.548 36.000 0.00 0.00 0.00 3.91
2468 3606 9.382244 GACCGAATATGTAACATATTGCTTTTC 57.618 33.333 0.00 0.00 0.00 2.29
2470 3608 8.567948 CCGAATATGTAACATATTGCTTTTCCT 58.432 33.333 0.00 0.00 0.00 3.36
2560 3699 1.243342 TTGTTGGCCAGAGCAATCCG 61.243 55.000 5.11 0.00 42.56 4.18
2653 3792 1.237285 GGCGTGCTTTCATGGTCACT 61.237 55.000 0.00 0.00 0.00 3.41
2752 3891 0.687354 TCCTTGGGCTGACTCTGTTC 59.313 55.000 0.00 0.00 0.00 3.18
2775 3914 7.473735 TCTGTCATCAGAAAGTTACTCTCAT 57.526 36.000 0.00 0.00 46.17 2.90
2778 3917 6.875726 TGTCATCAGAAAGTTACTCTCATTGG 59.124 38.462 0.00 0.00 0.00 3.16
2795 3934 8.540507 TCTCATTGGCTAACTTTACTAGAGAT 57.459 34.615 0.00 0.00 0.00 2.75
2797 3936 9.906660 CTCATTGGCTAACTTTACTAGAGATAG 57.093 37.037 0.00 0.00 0.00 2.08
2798 3937 8.361139 TCATTGGCTAACTTTACTAGAGATAGC 58.639 37.037 9.47 9.47 35.41 2.97
2820 3959 5.703130 AGCAGTAAGAGTTCCTTGACATTTC 59.297 40.000 0.00 0.00 36.34 2.17
2833 3972 5.579511 CCTTGACATTTCATTTTGCTCATCC 59.420 40.000 0.00 0.00 0.00 3.51
2994 4134 5.877012 CCAGCTACTTAAACTCACATCACAT 59.123 40.000 0.00 0.00 0.00 3.21
3077 4256 9.770097 CTCACTGATATAAACCATATGTTCTGT 57.230 33.333 1.24 0.00 35.67 3.41
3080 4263 7.872993 ACTGATATAAACCATATGTTCTGTCCG 59.127 37.037 1.24 0.00 35.67 4.79
3135 4318 4.741928 AGGAAACTTCAACTATGGGGTT 57.258 40.909 0.00 0.00 37.44 4.11
3180 4363 4.241555 ATGGACCGCTGGATCGCC 62.242 66.667 1.50 0.00 0.00 5.54
3223 4406 1.480312 CCATGGTCACCCCTGAAAACA 60.480 52.381 2.57 0.00 0.00 2.83
3246 4429 4.829492 ACCAAGAAGGGACAATCAAAGAAG 59.171 41.667 0.00 0.00 43.89 2.85
3288 4471 2.876219 GCTCTGAAGCTGCAAGGC 59.124 61.111 1.02 0.00 45.55 4.35
3377 4560 1.993370 CAAGAAGAAACCGGTAGCGAG 59.007 52.381 17.33 8.56 0.00 5.03
3492 4682 4.326766 CAGCAACAACCCGCGGTG 62.327 66.667 26.12 19.46 35.34 4.94
3493 4683 4.868116 AGCAACAACCCGCGGTGT 62.868 61.111 26.12 20.21 35.34 4.16
3538 4730 1.783434 CGAAAAGGTTACCGGACGC 59.217 57.895 9.46 0.00 0.00 5.19
3585 4778 9.600646 GTTTCTCTTTCTTTTACACTCTTATGC 57.399 33.333 0.00 0.00 0.00 3.14
3706 4899 6.546428 TTTTGGTTAGGACTAGGATCTCTG 57.454 41.667 0.00 0.00 0.00 3.35
3794 4995 4.954092 AAAATTCGAGTTCCATCTCTGC 57.046 40.909 0.00 0.00 32.83 4.26
3885 5657 4.410400 GACTGAAGGTGCCGGGGG 62.410 72.222 2.18 0.00 0.00 5.40
3917 5700 4.156556 TGCTGATAAACCTTTGCTAAGCAG 59.843 41.667 2.02 4.79 40.61 4.24
3942 5725 5.036737 ACAAGTCTTCAAATTCAAACTGCG 58.963 37.500 0.00 0.00 0.00 5.18
3946 5729 4.672413 GTCTTCAAATTCAAACTGCGTCTG 59.328 41.667 0.00 0.00 0.00 3.51
3982 5785 8.786898 TCATATAATCTGATTAAACCAGCTTGC 58.213 33.333 13.62 0.00 0.00 4.01
4035 5850 4.389576 CAGAGTTTGCACGCGCCC 62.390 66.667 5.73 0.00 37.32 6.13
4050 5865 2.347114 CCCGTGATGCACTGACCA 59.653 61.111 0.00 0.00 31.34 4.02
4162 5977 2.263741 CCCAAGTGCTGTGGCTGTC 61.264 63.158 0.00 0.00 39.59 3.51
4163 5978 2.263741 CCAAGTGCTGTGGCTGTCC 61.264 63.158 0.00 0.00 39.59 4.02
4166 5981 2.721971 AAGTGCTGTGGCTGTCCGAG 62.722 60.000 0.00 0.00 39.59 4.63
4183 5998 3.524759 GTGTTCGTCGAGCTCGCG 61.525 66.667 32.47 32.47 39.60 5.87
4230 6045 4.498520 CTGGCGTCTCGGATGCGT 62.499 66.667 6.49 0.00 44.61 5.24
4256 6071 1.477105 CGAACGATGATTGCTCGCTA 58.523 50.000 0.00 0.00 39.71 4.26
4276 6091 2.746277 GAACAGCGCCCGGTCATT 60.746 61.111 2.29 0.00 0.00 2.57
4394 6209 1.444553 GAGCACCAGACCGACGAAG 60.445 63.158 0.00 0.00 0.00 3.79
4478 6323 3.793144 GGCGCACCGAGCTTCTTG 61.793 66.667 10.83 0.00 42.61 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
71 78 0.985490 GGAGGGTCTGATCCTTGGCT 60.985 60.000 11.53 0.00 34.21 4.75
72 79 1.529309 GGAGGGTCTGATCCTTGGC 59.471 63.158 11.53 0.00 34.21 4.52
73 80 0.327000 AGGGAGGGTCTGATCCTTGG 60.327 60.000 11.53 0.00 35.80 3.61
74 81 1.127343 GAGGGAGGGTCTGATCCTTG 58.873 60.000 11.53 0.00 35.80 3.61
85 92 3.039526 AGAGGGAGGGAGGGAGGG 61.040 72.222 0.00 0.00 0.00 4.30
86 93 2.018086 AGAGAGGGAGGGAGGGAGG 61.018 68.421 0.00 0.00 0.00 4.30
87 94 1.541672 GAGAGAGGGAGGGAGGGAG 59.458 68.421 0.00 0.00 0.00 4.30
88 95 2.015726 GGAGAGAGGGAGGGAGGGA 61.016 68.421 0.00 0.00 0.00 4.20
102 109 2.761208 GTTGAGATCGAAAGGAGGGAGA 59.239 50.000 0.00 0.00 0.00 3.71
167 196 0.178992 TGGAAAGGTGCAGGGTTCTG 60.179 55.000 0.00 0.00 43.64 3.02
202 231 2.593956 GGAGGTGAGGTGGTGGGAC 61.594 68.421 0.00 0.00 0.00 4.46
255 284 4.816984 TCCCGTCCTCCTCCTCGC 62.817 72.222 0.00 0.00 0.00 5.03
341 374 1.059369 CGATCAGGCGTTGCTTTCG 59.941 57.895 0.00 0.00 0.00 3.46
469 535 0.954452 CAGAGACCACCAAACAAGCC 59.046 55.000 0.00 0.00 0.00 4.35
471 537 0.954452 GGCAGAGACCACCAAACAAG 59.046 55.000 0.00 0.00 0.00 3.16
584 655 1.638529 CTCCTCTCACCTGACCAAGT 58.361 55.000 0.00 0.00 0.00 3.16
701 793 1.359459 GAATGGCGGGTCAACTCGTC 61.359 60.000 0.00 0.00 0.00 4.20
820 1881 0.612732 AGATGGTGCAACATGGGTGG 60.613 55.000 24.86 0.00 39.98 4.61
821 1882 1.067425 CAAGATGGTGCAACATGGGTG 60.067 52.381 24.86 12.98 39.98 4.61
822 1883 1.259609 CAAGATGGTGCAACATGGGT 58.740 50.000 24.86 3.15 39.98 4.51
855 1917 5.699097 TTTATTTGGGGTGAGACGAAAAG 57.301 39.130 0.00 0.00 0.00 2.27
860 1922 3.627577 CAGGATTTATTTGGGGTGAGACG 59.372 47.826 0.00 0.00 0.00 4.18
883 1949 5.402997 AAGGGAAAGGAGAGTAAGTTACG 57.597 43.478 7.38 0.00 0.00 3.18
884 1950 6.766429 TGAAAGGGAAAGGAGAGTAAGTTAC 58.234 40.000 4.78 4.78 0.00 2.50
888 1954 5.645497 CACATGAAAGGGAAAGGAGAGTAAG 59.355 44.000 0.00 0.00 0.00 2.34
1080 2149 1.867363 GATGTGAGTGGAGGTAGGGT 58.133 55.000 0.00 0.00 0.00 4.34
1083 2155 1.405821 GGACGATGTGAGTGGAGGTAG 59.594 57.143 0.00 0.00 0.00 3.18
1085 2157 1.258445 GGGACGATGTGAGTGGAGGT 61.258 60.000 0.00 0.00 0.00 3.85
1100 2172 3.981416 GTGAAGAAAAATGAAAGCGGGAC 59.019 43.478 0.00 0.00 0.00 4.46
1101 2173 3.005367 GGTGAAGAAAAATGAAAGCGGGA 59.995 43.478 0.00 0.00 0.00 5.14
1103 2175 3.735746 GTGGTGAAGAAAAATGAAAGCGG 59.264 43.478 0.00 0.00 0.00 5.52
1104 2176 3.421888 CGTGGTGAAGAAAAATGAAAGCG 59.578 43.478 0.00 0.00 0.00 4.68
1107 2179 4.647424 AGCGTGGTGAAGAAAAATGAAA 57.353 36.364 0.00 0.00 0.00 2.69
1109 2181 4.606961 GAAAGCGTGGTGAAGAAAAATGA 58.393 39.130 0.00 0.00 0.00 2.57
1111 2192 3.314080 TCGAAAGCGTGGTGAAGAAAAAT 59.686 39.130 0.00 0.00 38.98 1.82
1114 2195 1.595794 GTCGAAAGCGTGGTGAAGAAA 59.404 47.619 0.00 0.00 38.98 2.52
1117 2198 0.934496 TTGTCGAAAGCGTGGTGAAG 59.066 50.000 0.00 0.00 38.98 3.02
1119 2200 0.103390 TCTTGTCGAAAGCGTGGTGA 59.897 50.000 0.00 0.00 38.98 4.02
1122 2203 1.457303 CTTCTCTTGTCGAAAGCGTGG 59.543 52.381 0.00 0.00 38.98 4.94
1123 2204 2.394708 TCTTCTCTTGTCGAAAGCGTG 58.605 47.619 0.00 0.00 38.98 5.34
1124 2205 2.795175 TCTTCTCTTGTCGAAAGCGT 57.205 45.000 0.00 0.00 38.98 5.07
1126 2207 5.854431 ATTCTTCTTCTCTTGTCGAAAGC 57.146 39.130 0.00 0.00 0.00 3.51
1129 2210 8.528643 TGGTAATATTCTTCTTCTCTTGTCGAA 58.471 33.333 0.00 0.00 0.00 3.71
1134 2215 7.281100 GGTGGTGGTAATATTCTTCTTCTCTTG 59.719 40.741 0.00 0.00 0.00 3.02
1137 2218 6.650120 TGGTGGTGGTAATATTCTTCTTCTC 58.350 40.000 0.00 0.00 0.00 2.87
1138 2219 6.636454 TGGTGGTGGTAATATTCTTCTTCT 57.364 37.500 0.00 0.00 0.00 2.85
1139 2220 7.775561 AGATTGGTGGTGGTAATATTCTTCTTC 59.224 37.037 0.00 0.00 0.00 2.87
1145 2229 9.185680 AGTTAAAGATTGGTGGTGGTAATATTC 57.814 33.333 0.00 0.00 0.00 1.75
1159 2243 5.886474 GGGTAAAGGGAGAGTTAAAGATTGG 59.114 44.000 0.00 0.00 0.00 3.16
1170 2254 1.005569 GGGTTTGGGGTAAAGGGAGAG 59.994 57.143 0.00 0.00 0.00 3.20
1189 2273 3.384532 GGTGTGCATGGCTTGGGG 61.385 66.667 2.33 0.00 0.00 4.96
1190 2274 3.384532 GGGTGTGCATGGCTTGGG 61.385 66.667 2.33 0.00 0.00 4.12
1196 2280 1.078214 ATGAGTCGGGTGTGCATGG 60.078 57.895 0.00 0.00 0.00 3.66
1198 2282 0.391661 GTGATGAGTCGGGTGTGCAT 60.392 55.000 0.00 0.00 0.00 3.96
1207 2291 2.456119 GCAAGGCCGTGATGAGTCG 61.456 63.158 23.82 0.00 0.00 4.18
1208 2292 1.375908 TGCAAGGCCGTGATGAGTC 60.376 57.895 23.82 3.75 0.00 3.36
1211 2295 2.741985 CGTGCAAGGCCGTGATGA 60.742 61.111 23.82 1.92 0.00 2.92
1227 2320 1.630244 CTGAGGTTGCTTCGAAGGCG 61.630 60.000 25.77 2.74 39.35 5.52
1244 2337 5.742453 CGATGGCATCTTTTTCTTTCATCTG 59.258 40.000 23.97 0.13 0.00 2.90
1269 2362 8.715190 TGATGGAATATGATGTGGAATGAAAT 57.285 30.769 0.00 0.00 0.00 2.17
1314 2407 2.038837 GGCGTAGTTTGTCTGCCCC 61.039 63.158 0.00 0.00 39.83 5.80
1384 2484 4.873259 GGCAAAACAAACCAAAGCTTTCTA 59.127 37.500 9.23 0.00 0.00 2.10
1465 2565 0.400213 CCAGGCCAACACCTAACTCA 59.600 55.000 5.01 0.00 38.26 3.41
1471 2571 0.038744 CAGAATCCAGGCCAACACCT 59.961 55.000 5.01 0.00 42.30 4.00
1481 2581 1.133668 GGTTCCCATCCCAGAATCCAG 60.134 57.143 0.00 0.00 0.00 3.86
1624 2729 8.150945 TCATCTAGTACCAAGGAGCAATATTTC 58.849 37.037 0.00 0.00 0.00 2.17
1627 2732 6.784969 ACTCATCTAGTACCAAGGAGCAATAT 59.215 38.462 0.00 0.00 36.36 1.28
1632 2737 6.041069 ACATAACTCATCTAGTACCAAGGAGC 59.959 42.308 0.00 0.00 37.50 4.70
1633 2738 7.285629 TGACATAACTCATCTAGTACCAAGGAG 59.714 40.741 0.00 0.00 37.50 3.69
1635 2740 7.348080 TGACATAACTCATCTAGTACCAAGG 57.652 40.000 0.00 0.00 37.50 3.61
1734 2845 5.935945 TCAGAAACTTAATCTGACCCAACA 58.064 37.500 3.61 0.00 46.23 3.33
1807 2922 3.004171 GAGGTTTGTACACACACACACA 58.996 45.455 13.84 0.00 37.13 3.72
1808 2923 3.004171 TGAGGTTTGTACACACACACAC 58.996 45.455 13.84 0.00 37.13 3.82
1809 2924 3.336138 TGAGGTTTGTACACACACACA 57.664 42.857 13.84 7.55 37.13 3.72
1810 2925 4.893424 AATGAGGTTTGTACACACACAC 57.107 40.909 13.84 5.30 35.09 3.82
1825 2940 4.503741 ACGAACATGTCCAAAAATGAGG 57.496 40.909 0.00 0.00 0.00 3.86
1842 2957 5.063204 ACTTTCACAGATCAATCCAACGAA 58.937 37.500 0.00 0.00 0.00 3.85
1845 2961 7.440523 AGTTACTTTCACAGATCAATCCAAC 57.559 36.000 0.00 0.00 0.00 3.77
1851 2967 6.017934 GCAGTCAAGTTACTTTCACAGATCAA 60.018 38.462 0.00 0.00 0.00 2.57
1854 2970 5.468072 CAGCAGTCAAGTTACTTTCACAGAT 59.532 40.000 0.00 0.00 0.00 2.90
1948 3068 1.787847 CCAGTCGGCATGTCGAAAC 59.212 57.895 26.02 13.99 41.05 2.78
1976 3096 3.743521 CACCACAAGGAATGAGTCAAGA 58.256 45.455 0.00 0.00 38.69 3.02
2006 3134 7.569240 CCAGAGTTCATTCTAATTTAGACCCT 58.431 38.462 5.62 0.00 33.84 4.34
2007 3135 6.261158 GCCAGAGTTCATTCTAATTTAGACCC 59.739 42.308 5.62 0.00 33.84 4.46
2057 3185 6.756542 GGAATGTAGTCAGCAACAAAGTTTTT 59.243 34.615 0.00 0.00 0.00 1.94
2058 3186 6.127479 TGGAATGTAGTCAGCAACAAAGTTTT 60.127 34.615 0.00 0.00 0.00 2.43
2060 3188 4.887071 TGGAATGTAGTCAGCAACAAAGTT 59.113 37.500 0.00 0.00 0.00 2.66
2061 3189 4.460263 TGGAATGTAGTCAGCAACAAAGT 58.540 39.130 0.00 0.00 0.00 2.66
2062 3190 5.633830 ATGGAATGTAGTCAGCAACAAAG 57.366 39.130 0.00 0.00 0.00 2.77
2063 3191 5.301551 ACAATGGAATGTAGTCAGCAACAAA 59.698 36.000 0.00 0.00 0.00 2.83
2064 3192 4.826733 ACAATGGAATGTAGTCAGCAACAA 59.173 37.500 0.00 0.00 0.00 2.83
2065 3193 4.216042 CACAATGGAATGTAGTCAGCAACA 59.784 41.667 0.00 0.00 30.84 3.33
2066 3194 4.726416 CACAATGGAATGTAGTCAGCAAC 58.274 43.478 0.00 0.00 30.84 4.17
2067 3195 3.191162 GCACAATGGAATGTAGTCAGCAA 59.809 43.478 0.00 0.00 30.84 3.91
2068 3196 2.749076 GCACAATGGAATGTAGTCAGCA 59.251 45.455 0.00 0.00 30.84 4.41
2069 3197 3.012518 AGCACAATGGAATGTAGTCAGC 58.987 45.455 0.00 0.00 30.84 4.26
2230 3362 3.379688 GGAAAAGGAAGCATGTGAGGATC 59.620 47.826 0.00 0.00 0.00 3.36
2236 3368 5.163581 CCTTCTATGGAAAAGGAAGCATGTG 60.164 44.000 0.00 0.00 44.02 3.21
2251 3383 2.408271 TGAGCAGCAACCTTCTATGG 57.592 50.000 0.00 0.00 0.00 2.74
2268 3400 1.523154 GGTTGGCTCCATTGCGTTGA 61.523 55.000 0.00 0.00 0.00 3.18
2292 3424 1.442987 GTTGCTGGGCTTTTGCTGT 59.557 52.632 0.00 0.00 46.54 4.40
2340 3472 4.454678 CCCAATCTTCTAGTGCTGCATTA 58.545 43.478 5.27 4.97 0.00 1.90
2352 3484 0.466124 GAGTAGCCGCCCAATCTTCT 59.534 55.000 0.00 0.00 0.00 2.85
2364 3496 1.841450 CGTTCTGAATCCGAGTAGCC 58.159 55.000 0.00 0.00 0.00 3.93
2370 3502 1.065358 GAAACGCGTTCTGAATCCGA 58.935 50.000 26.77 0.00 33.03 4.55
2414 3546 2.681152 AGTAAAGTTTTTGCGGCGAG 57.319 45.000 12.98 0.00 0.00 5.03
2416 3548 6.914760 TTAAATAGTAAAGTTTTTGCGGCG 57.085 33.333 0.51 0.51 0.00 6.46
2417 3549 7.482428 TCGATTAAATAGTAAAGTTTTTGCGGC 59.518 33.333 0.00 0.00 0.00 6.53
2438 3576 7.602644 AGCAATATGTTACATATTCGGTCGATT 59.397 33.333 23.08 3.54 0.00 3.34
2444 3582 8.567948 AGGAAAAGCAATATGTTACATATTCGG 58.432 33.333 23.08 15.89 0.00 4.30
2471 3609 9.023962 TGCCTGTATTTAAGAGATGATTTTGTT 57.976 29.630 0.00 0.00 0.00 2.83
2472 3610 8.579850 TGCCTGTATTTAAGAGATGATTTTGT 57.420 30.769 0.00 0.00 0.00 2.83
2473 3611 9.512435 CTTGCCTGTATTTAAGAGATGATTTTG 57.488 33.333 0.00 0.00 0.00 2.44
2483 3622 4.783227 AGTCCTCCTTGCCTGTATTTAAGA 59.217 41.667 0.00 0.00 0.00 2.10
2491 3630 2.677508 GAGAGTCCTCCTTGCCTGT 58.322 57.895 0.00 0.00 33.30 4.00
2515 3654 3.008049 GCAGTCTTTTAACTCCCCTGAGA 59.992 47.826 0.00 0.00 41.42 3.27
2518 3657 2.076863 CGCAGTCTTTTAACTCCCCTG 58.923 52.381 0.00 0.00 0.00 4.45
2560 3699 1.523758 CACTGGTCTGCTTGGTAACC 58.476 55.000 0.00 0.00 0.00 2.85
2653 3792 1.600636 CTTCCTGTTGCGCCCTTCA 60.601 57.895 4.18 0.00 0.00 3.02
2752 3891 7.064371 CCAATGAGAGTAACTTTCTGATGACAG 59.936 40.741 0.00 0.00 44.66 3.51
2775 3914 7.342284 ACTGCTATCTCTAGTAAAGTTAGCCAA 59.658 37.037 9.93 0.00 32.82 4.52
2778 3917 9.887406 CTTACTGCTATCTCTAGTAAAGTTAGC 57.113 37.037 6.62 6.62 36.71 3.09
2795 3934 6.360370 AATGTCAAGGAACTCTTACTGCTA 57.640 37.500 0.00 0.00 38.49 3.49
2797 3936 5.470098 TGAAATGTCAAGGAACTCTTACTGC 59.530 40.000 0.00 0.00 38.49 4.40
2798 3937 7.678947 ATGAAATGTCAAGGAACTCTTACTG 57.321 36.000 0.00 0.00 38.49 2.74
2971 4110 6.815641 AGATGTGATGTGAGTTTAAGTAGCTG 59.184 38.462 0.00 0.00 0.00 4.24
2982 4121 7.121611 TGCAAAATAATGAGATGTGATGTGAGT 59.878 33.333 0.00 0.00 0.00 3.41
2994 4134 6.587226 GCATGAACTGTTGCAAAATAATGAGA 59.413 34.615 0.00 0.00 38.72 3.27
3055 4233 7.872993 ACGGACAGAACATATGGTTTATATCAG 59.127 37.037 7.80 0.00 40.63 2.90
3074 4253 1.230635 CCTCCACTGCAAACGGACAG 61.231 60.000 0.00 0.00 39.86 3.51
3075 4254 1.227823 CCTCCACTGCAAACGGACA 60.228 57.895 0.00 0.00 0.00 4.02
3077 4256 2.429930 CCCTCCACTGCAAACGGA 59.570 61.111 0.00 0.00 0.00 4.69
3080 4263 3.854856 TTGCCCTCCACTGCAAAC 58.145 55.556 0.00 0.00 43.94 2.93
3223 4406 4.453480 TCTTTGATTGTCCCTTCTTGGT 57.547 40.909 0.00 0.00 0.00 3.67
3246 4429 0.102300 GGTTTGTGCTGGTGTTGTCC 59.898 55.000 0.00 0.00 0.00 4.02
3288 4471 3.058983 TGTTGTTGCTTAGACTGATTGCG 60.059 43.478 0.00 0.00 0.00 4.85
3336 4519 2.430332 GTCAGGAGAGGGAGATGACTTG 59.570 54.545 0.00 0.00 37.79 3.16
3377 4560 2.338500 CTACTGGTTTCTGCTCCGTTC 58.662 52.381 0.00 0.00 0.00 3.95
3492 4682 1.432514 TTCAAGCAGTGATCGCAGAC 58.567 50.000 9.33 0.00 42.51 3.51
3493 4683 1.800586 GTTTCAAGCAGTGATCGCAGA 59.199 47.619 9.33 0.00 45.75 4.26
3585 4778 3.498397 ACAGCAATGTAAGAGACAAACCG 59.502 43.478 0.00 0.00 42.78 4.44
3706 4899 3.101428 GCACACAATGCGCACAGC 61.101 61.111 14.90 7.04 46.55 4.40
3780 4981 3.118847 TGTCATGAGCAGAGATGGAACTC 60.119 47.826 0.00 0.00 37.19 3.01
3794 4995 9.533253 ACCAAGAAGTTAAAATTTTGTCATGAG 57.467 29.630 13.76 6.05 0.00 2.90
3885 5657 5.511234 AAGGTTTATCAGCAGAATCATGC 57.489 39.130 0.00 0.00 46.88 4.06
3893 5665 4.156556 TGCTTAGCAAAGGTTTATCAGCAG 59.843 41.667 3.67 0.00 34.76 4.24
3917 5700 5.276536 GCAGTTTGAATTTGAAGACTTGTGC 60.277 40.000 0.00 0.00 0.00 4.57
3942 5725 9.920133 TCAGATTATATGAGAATGTAAGCAGAC 57.080 33.333 0.00 0.00 0.00 3.51
4035 5850 1.293963 CCTGTGGTCAGTGCATCACG 61.294 60.000 0.00 0.00 39.64 4.35
4045 5860 0.400213 GTGGTTCATCCCTGTGGTCA 59.600 55.000 0.00 0.00 34.77 4.02
4050 5865 1.374947 CACGGTGGTTCATCCCTGT 59.625 57.895 0.00 0.00 34.77 4.00
4057 5872 1.453015 AAAGCTGCACGGTGGTTCA 60.453 52.632 10.60 0.00 0.00 3.18
4166 5981 3.524759 CGCGAGCTCGACGAACAC 61.525 66.667 38.74 18.07 43.02 3.32
4183 5998 2.589014 GCAACTGCATCTACTTTGTGC 58.411 47.619 0.00 0.00 41.59 4.57
4214 6029 4.794439 CACGCATCCGAGACGCCA 62.794 66.667 0.00 0.00 38.29 5.69
4276 6091 2.172483 GAAAGTGGAGAGGCTCGCCA 62.172 60.000 32.49 32.49 44.14 5.69
4394 6209 1.208293 GTGTCAGAAGGGGAGGTCATC 59.792 57.143 0.00 0.00 0.00 2.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.