Multiple sequence alignment - TraesCS7B01G009900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G009900 chr7B 100.000 3338 0 0 1 3338 6083860 6080523 0.000000e+00 6165.0
1 TraesCS7B01G009900 chr7B 83.093 1455 162 48 950 2376 6003403 6002005 0.000000e+00 1247.0
2 TraesCS7B01G009900 chr7B 91.209 455 30 4 366 818 6004072 6003626 7.920000e-171 610.0
3 TraesCS7B01G009900 chr7B 82.432 370 41 14 2560 2917 6001891 6001534 5.410000e-78 302.0
4 TraesCS7B01G009900 chr7B 93.567 171 11 0 3168 3338 6091707 6091537 4.270000e-64 255.0
5 TraesCS7B01G009900 chr7B 90.857 175 14 2 3164 3338 6001497 6001325 2.000000e-57 233.0
6 TraesCS7B01G009900 chr7B 85.976 164 23 0 210 373 161903251 161903414 3.420000e-40 176.0
7 TraesCS7B01G009900 chr7B 82.222 180 28 3 196 373 659434665 659434842 5.770000e-33 152.0
8 TraesCS7B01G009900 chr7B 81.928 166 27 3 208 373 39102432 39102270 1.620000e-28 137.0
9 TraesCS7B01G009900 chr7B 100.000 28 0 0 2403 2430 6081327 6081300 6.000000e-03 52.8
10 TraesCS7B01G009900 chr7B 100.000 28 0 0 2534 2561 6081458 6081431 6.000000e-03 52.8
11 TraesCS7B01G009900 chr7A 89.779 1898 116 33 831 2721 68344673 68342847 0.000000e+00 2359.0
12 TraesCS7B01G009900 chr7A 87.227 1832 159 37 947 2733 68773947 68772146 0.000000e+00 2017.0
13 TraesCS7B01G009900 chr7A 82.258 1240 159 35 1136 2350 68239786 68238583 0.000000e+00 1014.0
14 TraesCS7B01G009900 chr7A 84.988 846 99 18 1479 2307 68768663 68767829 0.000000e+00 833.0
15 TraesCS7B01G009900 chr7A 90.268 411 36 2 408 818 68774575 68774169 4.900000e-148 534.0
16 TraesCS7B01G009900 chr7A 86.081 467 53 8 975 1433 68770452 68769990 2.990000e-135 492.0
17 TraesCS7B01G009900 chr7A 84.615 455 43 13 370 818 68240320 68239887 8.560000e-116 427.0
18 TraesCS7B01G009900 chr7A 89.286 308 29 3 3034 3338 68772077 68771771 1.880000e-102 383.0
19 TraesCS7B01G009900 chr7A 92.661 218 11 3 2801 3015 68342832 68342617 3.230000e-80 309.0
20 TraesCS7B01G009900 chr7A 91.403 221 17 1 3118 3338 68341495 68341277 5.410000e-78 302.0
21 TraesCS7B01G009900 chr7A 92.000 200 12 2 370 569 68348242 68348047 9.120000e-71 278.0
22 TraesCS7B01G009900 chr7A 95.122 164 8 0 3173 3336 68763458 68763295 3.300000e-65 259.0
23 TraesCS7B01G009900 chr7A 85.590 229 32 1 150 377 197975613 197975385 4.300000e-59 239.0
24 TraesCS7B01G009900 chr7A 87.330 221 10 4 598 818 68344991 68344789 1.550000e-58 237.0
25 TraesCS7B01G009900 chr7A 90.857 175 14 2 3164 3338 68238064 68237892 2.000000e-57 233.0
26 TraesCS7B01G009900 chr7A 94.872 78 3 1 844 920 68774018 68773941 1.630000e-23 121.0
27 TraesCS7B01G009900 chr7A 92.683 82 6 0 3004 3085 68341568 68341487 5.850000e-23 119.0
28 TraesCS7B01G009900 chr7D 87.935 1293 108 24 965 2226 64497330 64496055 0.000000e+00 1480.0
29 TraesCS7B01G009900 chr7D 91.023 880 53 14 2094 2972 64530920 64530066 0.000000e+00 1164.0
30 TraesCS7B01G009900 chr7D 86.703 737 69 13 2234 2966 64496077 64495366 0.000000e+00 791.0
31 TraesCS7B01G009900 chr7D 89.966 588 44 4 1512 2096 64533027 64532452 0.000000e+00 745.0
32 TraesCS7B01G009900 chr7D 89.869 533 40 7 947 1478 64533643 64533124 0.000000e+00 673.0
33 TraesCS7B01G009900 chr7D 83.309 677 83 23 950 1611 64450829 64450168 6.160000e-167 597.0
34 TraesCS7B01G009900 chr7D 90.646 449 42 0 370 818 64534305 64533857 6.160000e-167 597.0
35 TraesCS7B01G009900 chr7D 90.200 449 37 2 370 818 64451493 64451052 2.230000e-161 579.0
36 TraesCS7B01G009900 chr7D 90.578 329 30 1 3011 3338 64530064 64529736 5.110000e-118 435.0
37 TraesCS7B01G009900 chr7D 83.206 393 49 12 3 379 170284217 170283826 8.870000e-91 344.0
38 TraesCS7B01G009900 chr7D 81.402 371 43 13 2560 2917 64449044 64448687 2.540000e-71 279.0
39 TraesCS7B01G009900 chr7D 92.614 176 13 0 3163 3338 64490334 64490159 1.540000e-63 254.0
40 TraesCS7B01G009900 chr7D 92.000 175 12 2 3164 3338 64448650 64448478 9.250000e-61 244.0
41 TraesCS7B01G009900 chr7D 83.142 261 39 4 2 261 121664613 121664869 2.000000e-57 233.0
42 TraesCS7B01G009900 chr7D 78.608 388 53 18 1 374 16260360 16260731 2.590000e-56 230.0
43 TraesCS7B01G009900 chr7D 96.296 81 3 0 2270 2350 64449261 64449181 2.090000e-27 134.0
44 TraesCS7B01G009900 chr5D 78.493 823 139 30 1633 2427 2287200 2288012 3.840000e-139 505.0
45 TraesCS7B01G009900 chr5D 81.587 315 53 3 1683 1997 2306351 2306660 4.270000e-64 255.0
46 TraesCS7B01G009900 chr5D 89.091 165 18 0 207 371 84377225 84377389 4.370000e-49 206.0
47 TraesCS7B01G009900 chr5B 77.256 831 143 34 1633 2430 3867134 3866317 2.360000e-121 446.0
48 TraesCS7B01G009900 chr5B 79.456 331 54 12 1643 1965 3819531 3819207 4.330000e-54 222.0
49 TraesCS7B01G009900 chr5B 77.378 389 76 12 2103 2486 3864801 3864420 1.560000e-53 220.0
50 TraesCS7B01G009900 chr5B 88.554 166 16 3 207 371 293460697 293460860 7.300000e-47 198.0
51 TraesCS7B01G009900 chr1D 84.115 384 46 6 1 371 287468988 287468607 1.140000e-94 357.0
52 TraesCS7B01G009900 chr1D 82.124 386 55 5 1 373 217139470 217139854 5.370000e-83 318.0
53 TraesCS7B01G009900 chr1A 83.551 383 51 4 1 371 301144633 301144251 6.850000e-92 348.0
54 TraesCS7B01G009900 chr3D 82.038 373 44 9 1 371 433433882 433433531 2.520000e-76 296.0
55 TraesCS7B01G009900 chr6D 85.507 276 37 3 1 273 86597773 86598048 5.450000e-73 285.0
56 TraesCS7B01G009900 chr4B 89.947 189 19 0 183 371 74669777 74669965 9.250000e-61 244.0
57 TraesCS7B01G009900 chr5A 80.547 329 47 10 17 329 600501306 600501633 1.550000e-58 237.0
58 TraesCS7B01G009900 chr2D 85.542 166 22 2 207 371 552067969 552068133 4.430000e-39 172.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G009900 chr7B 6080523 6083860 3337 True 2090.200000 6165 100.00000 1 3338 3 chr7B.!!$R4 3337
1 TraesCS7B01G009900 chr7B 6001325 6004072 2747 True 598.000000 1247 86.89775 366 3338 4 chr7B.!!$R3 2972
2 TraesCS7B01G009900 chr7A 68767829 68774575 6746 True 730.000000 2017 88.78700 408 3338 6 chr7A.!!$R5 2930
3 TraesCS7B01G009900 chr7A 68341277 68348242 6965 True 600.666667 2359 90.97600 370 3338 6 chr7A.!!$R4 2968
4 TraesCS7B01G009900 chr7A 68237892 68240320 2428 True 558.000000 1014 85.91000 370 3338 3 chr7A.!!$R3 2968
5 TraesCS7B01G009900 chr7D 64495366 64497330 1964 True 1135.500000 1480 87.31900 965 2966 2 chr7D.!!$R4 2001
6 TraesCS7B01G009900 chr7D 64529736 64534305 4569 True 722.800000 1164 90.41640 370 3338 5 chr7D.!!$R5 2968
7 TraesCS7B01G009900 chr7D 64448478 64451493 3015 True 366.600000 597 88.64140 370 3338 5 chr7D.!!$R3 2968
8 TraesCS7B01G009900 chr5D 2287200 2288012 812 False 505.000000 505 78.49300 1633 2427 1 chr5D.!!$F1 794
9 TraesCS7B01G009900 chr5B 3864420 3867134 2714 True 333.000000 446 77.31700 1633 2486 2 chr5B.!!$R2 853

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
355 356 0.035915 GAGGCAGGTTTGAGAGGTCC 60.036 60.0 0.0 0.0 0.00 4.46 F
361 362 0.108019 GGTTTGAGAGGTCCGGTTGT 59.892 55.0 0.0 0.0 0.00 3.32 F
1183 4380 0.249120 CGAGTATGCCAACTCCACCA 59.751 55.0 9.3 0.0 42.46 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1364 4572 1.468054 GGCCGTCAAAGTTGCATCATC 60.468 52.381 0.0 0.0 0.00 2.92 R
1687 4985 3.496331 TCCCCTTGCCAAAACTAGAAAG 58.504 45.455 0.0 0.0 0.00 2.62 R
2586 7764 1.074405 TCAACTCCCAGCTTCTGCATT 59.926 47.619 0.0 0.0 42.74 3.56 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.453679 GAGGACGGGAGCGCTCTT 61.454 66.667 34.46 20.28 0.00 2.85
22 23 3.418744 GAGGACGGGAGCGCTCTTC 62.419 68.421 34.46 26.00 0.00 2.87
23 24 4.516195 GGACGGGAGCGCTCTTCC 62.516 72.222 34.46 29.87 34.39 3.46
27 28 4.214327 GGGAGCGCTCTTCCGGAG 62.214 72.222 34.46 0.00 44.49 4.63
36 37 1.464734 CTCTTCCGGAGCTAGTGACA 58.535 55.000 3.34 0.00 35.08 3.58
37 38 1.403679 CTCTTCCGGAGCTAGTGACAG 59.596 57.143 3.34 0.00 35.08 3.51
38 39 1.004394 TCTTCCGGAGCTAGTGACAGA 59.996 52.381 3.34 0.00 0.00 3.41
39 40 1.403679 CTTCCGGAGCTAGTGACAGAG 59.596 57.143 3.34 0.00 0.00 3.35
40 41 0.618981 TCCGGAGCTAGTGACAGAGA 59.381 55.000 0.00 0.00 0.00 3.10
41 42 1.021202 CCGGAGCTAGTGACAGAGAG 58.979 60.000 0.00 0.00 0.00 3.20
42 43 0.380378 CGGAGCTAGTGACAGAGAGC 59.620 60.000 0.00 0.00 35.07 4.09
43 44 0.744281 GGAGCTAGTGACAGAGAGCC 59.256 60.000 0.00 0.00 35.45 4.70
44 45 1.684869 GGAGCTAGTGACAGAGAGCCT 60.685 57.143 0.00 0.00 35.45 4.58
52 53 2.581354 CAGAGAGCCTGGGAACGG 59.419 66.667 0.00 0.00 39.23 4.44
53 54 3.394836 AGAGAGCCTGGGAACGGC 61.395 66.667 0.00 0.00 46.10 5.68
83 84 4.687215 GCGGTGGCAGAGCTGTCA 62.687 66.667 0.00 0.00 43.73 3.58
84 85 2.433838 CGGTGGCAGAGCTGTCAG 60.434 66.667 4.82 0.00 46.84 3.51
89 90 4.074526 GCAGAGCTGTCAGCCGGA 62.075 66.667 21.32 0.00 43.77 5.14
90 91 2.125753 CAGAGCTGTCAGCCGGAC 60.126 66.667 21.32 10.43 43.77 4.79
105 106 3.437795 GACGACGCGGAGGAGGAA 61.438 66.667 12.47 0.00 0.00 3.36
106 107 3.398353 GACGACGCGGAGGAGGAAG 62.398 68.421 12.47 0.00 0.00 3.46
107 108 3.132139 CGACGCGGAGGAGGAAGA 61.132 66.667 12.47 0.00 0.00 2.87
108 109 2.697761 CGACGCGGAGGAGGAAGAA 61.698 63.158 12.47 0.00 0.00 2.52
109 110 1.153804 GACGCGGAGGAGGAAGAAC 60.154 63.158 12.47 0.00 0.00 3.01
110 111 1.874345 GACGCGGAGGAGGAAGAACA 61.874 60.000 12.47 0.00 0.00 3.18
111 112 1.153745 CGCGGAGGAGGAAGAACAG 60.154 63.158 0.00 0.00 0.00 3.16
112 113 1.595993 CGCGGAGGAGGAAGAACAGA 61.596 60.000 0.00 0.00 0.00 3.41
113 114 0.174617 GCGGAGGAGGAAGAACAGAG 59.825 60.000 0.00 0.00 0.00 3.35
114 115 0.820871 CGGAGGAGGAAGAACAGAGG 59.179 60.000 0.00 0.00 0.00 3.69
115 116 1.617263 CGGAGGAGGAAGAACAGAGGA 60.617 57.143 0.00 0.00 0.00 3.71
116 117 2.107366 GGAGGAGGAAGAACAGAGGAG 58.893 57.143 0.00 0.00 0.00 3.69
117 118 2.291930 GGAGGAGGAAGAACAGAGGAGA 60.292 54.545 0.00 0.00 0.00 3.71
118 119 3.023832 GAGGAGGAAGAACAGAGGAGAG 58.976 54.545 0.00 0.00 0.00 3.20
119 120 2.652348 AGGAGGAAGAACAGAGGAGAGA 59.348 50.000 0.00 0.00 0.00 3.10
120 121 3.023832 GGAGGAAGAACAGAGGAGAGAG 58.976 54.545 0.00 0.00 0.00 3.20
121 122 2.427095 GAGGAAGAACAGAGGAGAGAGC 59.573 54.545 0.00 0.00 0.00 4.09
122 123 2.175202 GGAAGAACAGAGGAGAGAGCA 58.825 52.381 0.00 0.00 0.00 4.26
123 124 2.564947 GGAAGAACAGAGGAGAGAGCAA 59.435 50.000 0.00 0.00 0.00 3.91
124 125 3.007398 GGAAGAACAGAGGAGAGAGCAAA 59.993 47.826 0.00 0.00 0.00 3.68
125 126 4.323409 GGAAGAACAGAGGAGAGAGCAAAT 60.323 45.833 0.00 0.00 0.00 2.32
126 127 4.205065 AGAACAGAGGAGAGAGCAAATG 57.795 45.455 0.00 0.00 0.00 2.32
127 128 3.055240 AGAACAGAGGAGAGAGCAAATGG 60.055 47.826 0.00 0.00 0.00 3.16
128 129 2.544721 ACAGAGGAGAGAGCAAATGGA 58.455 47.619 0.00 0.00 0.00 3.41
129 130 3.113824 ACAGAGGAGAGAGCAAATGGAT 58.886 45.455 0.00 0.00 0.00 3.41
130 131 3.522750 ACAGAGGAGAGAGCAAATGGATT 59.477 43.478 0.00 0.00 0.00 3.01
131 132 4.128643 CAGAGGAGAGAGCAAATGGATTC 58.871 47.826 0.00 0.00 0.00 2.52
132 133 3.129871 GAGGAGAGAGCAAATGGATTCG 58.870 50.000 0.00 0.00 0.00 3.34
133 134 2.768527 AGGAGAGAGCAAATGGATTCGA 59.231 45.455 0.00 0.00 0.00 3.71
134 135 3.390639 AGGAGAGAGCAAATGGATTCGAT 59.609 43.478 0.00 0.00 0.00 3.59
135 136 4.590647 AGGAGAGAGCAAATGGATTCGATA 59.409 41.667 0.00 0.00 0.00 2.92
136 137 4.928615 GGAGAGAGCAAATGGATTCGATAG 59.071 45.833 0.00 0.00 0.00 2.08
137 138 5.510520 GGAGAGAGCAAATGGATTCGATAGT 60.511 44.000 0.00 0.00 37.40 2.12
138 139 5.923204 AGAGAGCAAATGGATTCGATAGTT 58.077 37.500 0.00 0.00 37.40 2.24
139 140 6.352516 AGAGAGCAAATGGATTCGATAGTTT 58.647 36.000 0.00 0.00 37.40 2.66
140 141 6.259608 AGAGAGCAAATGGATTCGATAGTTTG 59.740 38.462 0.00 0.00 37.40 2.93
141 142 5.297776 AGAGCAAATGGATTCGATAGTTTGG 59.702 40.000 0.00 0.00 37.40 3.28
142 143 4.339247 AGCAAATGGATTCGATAGTTTGGG 59.661 41.667 0.00 0.00 37.40 4.12
143 144 4.499696 GCAAATGGATTCGATAGTTTGGGG 60.500 45.833 0.00 0.00 37.40 4.96
144 145 3.508845 ATGGATTCGATAGTTTGGGGG 57.491 47.619 0.00 0.00 37.40 5.40
165 166 2.112380 GGGGGATTTGGTGCAATTTG 57.888 50.000 0.00 0.00 0.00 2.32
166 167 1.339920 GGGGGATTTGGTGCAATTTGG 60.340 52.381 0.00 0.00 0.00 3.28
167 168 1.339920 GGGGATTTGGTGCAATTTGGG 60.340 52.381 0.00 0.00 0.00 4.12
168 169 1.452110 GGATTTGGTGCAATTTGGGC 58.548 50.000 0.00 0.00 0.00 5.36
169 170 1.003464 GGATTTGGTGCAATTTGGGCT 59.997 47.619 0.00 0.00 0.00 5.19
170 171 2.078392 GATTTGGTGCAATTTGGGCTG 58.922 47.619 0.00 0.00 0.00 4.85
171 172 0.108207 TTTGGTGCAATTTGGGCTGG 59.892 50.000 0.00 0.00 0.00 4.85
172 173 1.766625 TTGGTGCAATTTGGGCTGGG 61.767 55.000 0.00 0.00 0.00 4.45
173 174 2.216331 GGTGCAATTTGGGCTGGGT 61.216 57.895 0.00 0.00 0.00 4.51
174 175 1.004679 GTGCAATTTGGGCTGGGTG 60.005 57.895 0.00 0.00 0.00 4.61
175 176 2.215625 TGCAATTTGGGCTGGGTGG 61.216 57.895 0.00 0.00 0.00 4.61
176 177 2.958281 GCAATTTGGGCTGGGTGGG 61.958 63.158 0.00 0.00 0.00 4.61
177 178 2.122504 AATTTGGGCTGGGTGGGG 59.877 61.111 0.00 0.00 0.00 4.96
178 179 2.800496 AATTTGGGCTGGGTGGGGT 61.800 57.895 0.00 0.00 0.00 4.95
179 180 2.339462 AATTTGGGCTGGGTGGGGTT 62.339 55.000 0.00 0.00 0.00 4.11
180 181 3.765257 TTTGGGCTGGGTGGGGTTG 62.765 63.158 0.00 0.00 0.00 3.77
182 183 4.678743 GGGCTGGGTGGGGTTGTC 62.679 72.222 0.00 0.00 0.00 3.18
185 186 4.344865 CTGGGTGGGGTTGTCGGG 62.345 72.222 0.00 0.00 0.00 5.14
187 188 4.340246 GGGTGGGGTTGTCGGGTC 62.340 72.222 0.00 0.00 0.00 4.46
188 189 3.246880 GGTGGGGTTGTCGGGTCT 61.247 66.667 0.00 0.00 0.00 3.85
189 190 2.032071 GTGGGGTTGTCGGGTCTG 59.968 66.667 0.00 0.00 0.00 3.51
190 191 2.122769 TGGGGTTGTCGGGTCTGA 60.123 61.111 0.00 0.00 0.00 3.27
191 192 1.537889 TGGGGTTGTCGGGTCTGAT 60.538 57.895 0.00 0.00 0.00 2.90
192 193 1.078426 GGGGTTGTCGGGTCTGATG 60.078 63.158 0.00 0.00 0.00 3.07
193 194 1.677552 GGGTTGTCGGGTCTGATGT 59.322 57.895 0.00 0.00 0.00 3.06
194 195 0.673644 GGGTTGTCGGGTCTGATGTG 60.674 60.000 0.00 0.00 0.00 3.21
195 196 1.298859 GGTTGTCGGGTCTGATGTGC 61.299 60.000 0.00 0.00 0.00 4.57
196 197 1.003839 TTGTCGGGTCTGATGTGCC 60.004 57.895 0.00 0.00 0.00 5.01
197 198 2.509336 GTCGGGTCTGATGTGCCG 60.509 66.667 0.00 0.00 0.00 5.69
198 199 3.770040 TCGGGTCTGATGTGCCGG 61.770 66.667 0.00 0.00 0.00 6.13
199 200 4.838152 CGGGTCTGATGTGCCGGG 62.838 72.222 2.18 0.00 0.00 5.73
221 222 4.394712 CCCGGGCGGCCTCATATC 62.395 72.222 27.04 0.00 0.00 1.63
222 223 4.394712 CCGGGCGGCCTCATATCC 62.395 72.222 27.04 0.00 0.00 2.59
227 228 4.394712 CGGCCTCATATCCGCCCC 62.395 72.222 0.00 0.00 39.66 5.80
228 229 3.249189 GGCCTCATATCCGCCCCA 61.249 66.667 0.00 0.00 36.63 4.96
229 230 2.606587 GGCCTCATATCCGCCCCAT 61.607 63.158 0.00 0.00 36.63 4.00
230 231 1.271840 GGCCTCATATCCGCCCCATA 61.272 60.000 0.00 0.00 36.63 2.74
231 232 0.839946 GCCTCATATCCGCCCCATAT 59.160 55.000 0.00 0.00 0.00 1.78
232 233 1.212935 GCCTCATATCCGCCCCATATT 59.787 52.381 0.00 0.00 0.00 1.28
233 234 2.357154 GCCTCATATCCGCCCCATATTT 60.357 50.000 0.00 0.00 0.00 1.40
234 235 3.282021 CCTCATATCCGCCCCATATTTG 58.718 50.000 0.00 0.00 0.00 2.32
235 236 3.282021 CTCATATCCGCCCCATATTTGG 58.718 50.000 0.00 0.00 43.23 3.28
247 248 3.368248 CCATATTTGGGCTGGATATGGG 58.632 50.000 17.88 6.92 44.56 4.00
248 249 3.368248 CATATTTGGGCTGGATATGGGG 58.632 50.000 0.00 0.00 32.63 4.96
249 250 0.488668 ATTTGGGCTGGATATGGGGG 59.511 55.000 0.00 0.00 0.00 5.40
263 264 2.930562 GGGGGTGCAGGTCAGTCT 60.931 66.667 0.00 0.00 0.00 3.24
264 265 2.348998 GGGGTGCAGGTCAGTCTG 59.651 66.667 0.00 0.00 37.79 3.51
265 266 2.348998 GGGTGCAGGTCAGTCTGG 59.651 66.667 0.00 0.00 35.43 3.86
266 267 2.348998 GGTGCAGGTCAGTCTGGG 59.651 66.667 0.00 0.00 35.43 4.45
267 268 2.359230 GTGCAGGTCAGTCTGGGC 60.359 66.667 0.00 0.32 35.43 5.36
268 269 2.848679 TGCAGGTCAGTCTGGGCA 60.849 61.111 0.00 2.95 35.43 5.36
269 270 2.226315 TGCAGGTCAGTCTGGGCAT 61.226 57.895 0.00 0.00 35.43 4.40
270 271 1.001641 GCAGGTCAGTCTGGGCATT 60.002 57.895 0.00 0.00 35.43 3.56
271 272 0.610232 GCAGGTCAGTCTGGGCATTT 60.610 55.000 0.00 0.00 35.43 2.32
272 273 1.171308 CAGGTCAGTCTGGGCATTTG 58.829 55.000 0.00 0.00 0.00 2.32
273 274 0.038744 AGGTCAGTCTGGGCATTTGG 59.961 55.000 0.00 0.00 0.00 3.28
274 275 0.967380 GGTCAGTCTGGGCATTTGGG 60.967 60.000 0.00 0.00 0.00 4.12
275 276 0.038166 GTCAGTCTGGGCATTTGGGA 59.962 55.000 0.00 0.00 0.00 4.37
276 277 0.329261 TCAGTCTGGGCATTTGGGAG 59.671 55.000 0.00 0.00 0.00 4.30
277 278 0.682209 CAGTCTGGGCATTTGGGAGG 60.682 60.000 0.00 0.00 0.00 4.30
278 279 2.054453 GTCTGGGCATTTGGGAGGC 61.054 63.158 0.00 0.00 0.00 4.70
308 309 4.484987 AAAAATCGTGACCGGGCA 57.515 50.000 5.41 5.41 33.95 5.36
309 310 2.253513 AAAAATCGTGACCGGGCAG 58.746 52.632 12.52 5.06 33.95 4.85
310 311 1.862602 AAAAATCGTGACCGGGCAGC 61.863 55.000 12.52 4.72 33.95 5.25
344 345 4.473520 CGGGCGAATGAGGCAGGT 62.474 66.667 0.00 0.00 38.57 4.00
345 346 2.044946 GGGCGAATGAGGCAGGTT 60.045 61.111 0.00 0.00 38.57 3.50
346 347 1.678970 GGGCGAATGAGGCAGGTTT 60.679 57.895 0.00 0.00 38.57 3.27
347 348 1.508088 GGCGAATGAGGCAGGTTTG 59.492 57.895 0.00 0.00 36.61 2.93
348 349 0.960364 GGCGAATGAGGCAGGTTTGA 60.960 55.000 0.00 0.00 36.61 2.69
349 350 0.449388 GCGAATGAGGCAGGTTTGAG 59.551 55.000 0.00 0.00 0.00 3.02
350 351 1.945819 GCGAATGAGGCAGGTTTGAGA 60.946 52.381 0.00 0.00 0.00 3.27
351 352 2.005451 CGAATGAGGCAGGTTTGAGAG 58.995 52.381 0.00 0.00 0.00 3.20
352 353 2.363683 GAATGAGGCAGGTTTGAGAGG 58.636 52.381 0.00 0.00 0.00 3.69
353 354 1.366319 ATGAGGCAGGTTTGAGAGGT 58.634 50.000 0.00 0.00 0.00 3.85
354 355 0.687354 TGAGGCAGGTTTGAGAGGTC 59.313 55.000 0.00 0.00 0.00 3.85
355 356 0.035915 GAGGCAGGTTTGAGAGGTCC 60.036 60.000 0.00 0.00 0.00 4.46
356 357 1.376037 GGCAGGTTTGAGAGGTCCG 60.376 63.158 0.00 0.00 0.00 4.79
357 358 1.376037 GCAGGTTTGAGAGGTCCGG 60.376 63.158 0.00 0.00 0.00 5.14
358 359 2.058675 CAGGTTTGAGAGGTCCGGT 58.941 57.895 0.00 0.00 0.00 5.28
359 360 0.396811 CAGGTTTGAGAGGTCCGGTT 59.603 55.000 0.00 0.00 0.00 4.44
360 361 0.396811 AGGTTTGAGAGGTCCGGTTG 59.603 55.000 0.00 0.00 0.00 3.77
361 362 0.108019 GGTTTGAGAGGTCCGGTTGT 59.892 55.000 0.00 0.00 0.00 3.32
362 363 1.345415 GGTTTGAGAGGTCCGGTTGTA 59.655 52.381 0.00 0.00 0.00 2.41
363 364 2.410939 GTTTGAGAGGTCCGGTTGTAC 58.589 52.381 0.00 0.00 0.00 2.90
364 365 1.707106 TTGAGAGGTCCGGTTGTACA 58.293 50.000 0.00 0.00 0.00 2.90
365 366 1.933021 TGAGAGGTCCGGTTGTACAT 58.067 50.000 0.00 0.00 0.00 2.29
366 367 1.548719 TGAGAGGTCCGGTTGTACATG 59.451 52.381 0.00 0.00 0.00 3.21
367 368 0.249398 AGAGGTCCGGTTGTACATGC 59.751 55.000 0.00 0.00 0.00 4.06
368 369 0.249398 GAGGTCCGGTTGTACATGCT 59.751 55.000 0.00 0.00 0.00 3.79
511 514 8.882415 ATCTTAATGCTTAATGGCTCAAAATG 57.118 30.769 0.00 0.00 0.00 2.32
544 547 0.740737 GAAATGGATGGAGTTGCCCG 59.259 55.000 0.00 0.00 34.97 6.13
645 3687 5.348164 TCAAATCGAATCGAATCAGCTACA 58.652 37.500 10.12 0.00 39.99 2.74
648 3690 6.851222 AATCGAATCGAATCAGCTACAATT 57.149 33.333 10.12 0.00 39.99 2.32
671 3713 1.756950 TGCGGATCGGGAGCTAACT 60.757 57.895 2.13 0.00 0.00 2.24
687 3729 6.037281 GGAGCTAACTTGTGAAAGCTAATACC 59.963 42.308 0.00 0.00 45.04 2.73
713 3755 3.004862 GTGACGTTTACCGGATTCCAAT 58.995 45.455 9.46 0.00 42.24 3.16
733 3775 1.733041 CCTCGTACGGTGCACACAG 60.733 63.158 20.43 11.75 0.00 3.66
818 3860 9.630098 CAAGTTGCATGATAAATTTAGTCAAGT 57.370 29.630 3.94 3.95 0.00 3.16
820 3862 9.630098 AGTTGCATGATAAATTTAGTCAAGTTG 57.370 29.630 3.94 0.00 0.00 3.16
821 3863 8.375465 GTTGCATGATAAATTTAGTCAAGTTGC 58.625 33.333 17.08 17.08 0.00 4.17
822 3864 7.600960 TGCATGATAAATTTAGTCAAGTTGCA 58.399 30.769 19.67 19.67 34.73 4.08
823 3865 8.252417 TGCATGATAAATTTAGTCAAGTTGCAT 58.748 29.630 19.67 0.00 33.18 3.96
824 3866 8.537223 GCATGATAAATTTAGTCAAGTTGCATG 58.463 33.333 17.97 0.00 38.38 4.06
869 4037 2.738846 CTGCTCACACACAACCATCTAC 59.261 50.000 0.00 0.00 0.00 2.59
924 4113 5.346181 CTAGCTAGCAGATAATTACCCCC 57.654 47.826 18.83 0.00 0.00 5.40
925 4114 2.567615 AGCTAGCAGATAATTACCCCCG 59.432 50.000 18.83 0.00 0.00 5.73
926 4115 2.935676 GCTAGCAGATAATTACCCCCGC 60.936 54.545 10.63 0.00 0.00 6.13
927 4116 1.136828 AGCAGATAATTACCCCCGCA 58.863 50.000 0.00 0.00 0.00 5.69
928 4117 1.493022 AGCAGATAATTACCCCCGCAA 59.507 47.619 0.00 0.00 0.00 4.85
929 4118 2.092103 AGCAGATAATTACCCCCGCAAA 60.092 45.455 0.00 0.00 0.00 3.68
930 4119 2.691011 GCAGATAATTACCCCCGCAAAA 59.309 45.455 0.00 0.00 0.00 2.44
931 4120 3.131400 GCAGATAATTACCCCCGCAAAAA 59.869 43.478 0.00 0.00 0.00 1.94
1030 4227 3.217626 GGCAAGATTGTGATTAGGAGGG 58.782 50.000 0.00 0.00 0.00 4.30
1075 4272 3.121030 CCTTCTCCAAGCGGCGTG 61.121 66.667 9.37 9.02 0.00 5.34
1083 4280 3.307906 AAGCGGCGTGGTGGTCTA 61.308 61.111 9.37 0.00 0.00 2.59
1134 4331 1.695242 TGTAATGTCCAGGTCGGTGTT 59.305 47.619 0.00 0.00 35.57 3.32
1183 4380 0.249120 CGAGTATGCCAACTCCACCA 59.751 55.000 9.30 0.00 42.46 4.17
1237 4434 8.421249 TTCCATGATTCAAAACTACCAATCTT 57.579 30.769 0.00 0.00 0.00 2.40
1290 4492 4.156556 GTGTCACAAGTCATGGTATGCATT 59.843 41.667 3.54 0.00 0.00 3.56
1381 4597 3.557577 TTGGATGATGCAACTTTGACG 57.442 42.857 0.00 0.00 0.00 4.35
1384 4600 0.527565 ATGATGCAACTTTGACGGCC 59.472 50.000 0.00 0.00 0.00 6.13
1389 4605 1.269517 TGCAACTTTGACGGCCAATTC 60.270 47.619 2.24 0.00 34.23 2.17
1391 4607 2.227865 GCAACTTTGACGGCCAATTCTA 59.772 45.455 2.24 0.00 34.23 2.10
1476 4699 3.081061 GTTATGCTCATGTGTGACCCAA 58.919 45.455 0.00 0.00 0.00 4.12
1485 4715 6.039717 GCTCATGTGTGACCCAATAAATGTAT 59.960 38.462 0.00 0.00 0.00 2.29
1571 4861 7.494952 ACCCATAAGTCTAAAAAGAGCGTATTC 59.505 37.037 0.00 0.00 0.00 1.75
1573 4863 7.434307 CCATAAGTCTAAAAAGAGCGTATTCGA 59.566 37.037 0.00 0.00 39.71 3.71
1714 5012 0.263172 TTTTGGCAAGGGGAAGTCCA 59.737 50.000 0.00 0.00 37.91 4.02
1796 5292 5.724370 TCAGTTCCTTCCATTGATACCTACA 59.276 40.000 0.00 0.00 0.00 2.74
1846 5369 6.888632 ACTAGAAAATGCATTCAAGTCATCCT 59.111 34.615 13.38 2.76 0.00 3.24
1889 5416 5.014649 GGAAGCTAATGGGGGAGAGATTATT 59.985 44.000 0.00 0.00 0.00 1.40
2021 5575 4.141482 TGCTAATCATTGTACCCTCTTCCC 60.141 45.833 0.00 0.00 0.00 3.97
2039 5593 6.640518 TCTTCCCTAATCATGACACTAACAC 58.359 40.000 0.00 0.00 0.00 3.32
2040 5594 6.440647 TCTTCCCTAATCATGACACTAACACT 59.559 38.462 0.00 0.00 0.00 3.55
2083 5643 3.009473 ACTGTATGTTTCCTGATGCCTGT 59.991 43.478 0.00 0.00 0.00 4.00
2256 7355 6.088085 CGTGATAATTCAACAAAGCAACCTTC 59.912 38.462 0.00 0.00 32.48 3.46
2404 7569 2.622977 GGGGGTTGAGATTAATGGTGCA 60.623 50.000 0.00 0.00 0.00 4.57
2432 7598 6.908825 TGATATTGGTTTCAGCTTTGTGTAC 58.091 36.000 0.00 0.00 0.00 2.90
2538 7715 7.338800 GCCAATTATATATAACATGGCAGCT 57.661 36.000 33.81 9.95 46.85 4.24
2540 7717 7.703621 GCCAATTATATATAACATGGCAGCTTG 59.296 37.037 33.81 20.75 46.85 4.01
2541 7718 8.959548 CCAATTATATATAACATGGCAGCTTGA 58.040 33.333 18.98 0.00 30.60 3.02
2547 7724 5.717078 ATAACATGGCAGCTTGATATTGG 57.283 39.130 0.00 0.00 0.00 3.16
2548 7725 3.022557 ACATGGCAGCTTGATATTGGT 57.977 42.857 0.00 0.00 0.00 3.67
2549 7726 3.368248 ACATGGCAGCTTGATATTGGTT 58.632 40.909 0.00 0.00 0.00 3.67
2550 7727 3.770933 ACATGGCAGCTTGATATTGGTTT 59.229 39.130 0.00 0.00 0.00 3.27
2551 7728 4.142093 ACATGGCAGCTTGATATTGGTTTC 60.142 41.667 0.00 0.00 0.00 2.78
2552 7729 3.429492 TGGCAGCTTGATATTGGTTTCA 58.571 40.909 0.00 0.00 0.00 2.69
2553 7730 3.444742 TGGCAGCTTGATATTGGTTTCAG 59.555 43.478 0.00 0.00 0.00 3.02
2554 7731 3.442100 GCAGCTTGATATTGGTTTCAGC 58.558 45.455 0.00 0.00 0.00 4.26
2555 7732 3.129988 GCAGCTTGATATTGGTTTCAGCT 59.870 43.478 0.00 0.00 31.20 4.24
2558 7735 5.575606 CAGCTTGATATTGGTTTCAGCTTTG 59.424 40.000 0.00 0.00 29.73 2.77
2582 7759 4.873827 TGGTAGTTGAGTTCACAGTTTCAC 59.126 41.667 0.00 0.00 0.00 3.18
2586 7764 6.325919 AGTTGAGTTCACAGTTTCACAAAA 57.674 33.333 0.00 0.00 0.00 2.44
2690 7871 8.483307 AATTAATACAGGCTTTTCATTTGCAG 57.517 30.769 0.00 0.00 0.00 4.41
2693 7874 1.050204 AGGCTTTTCATTTGCAGGCA 58.950 45.000 0.00 0.00 34.31 4.75
2699 7880 0.310543 TTCATTTGCAGGCACGTGAC 59.689 50.000 22.23 18.98 0.00 3.67
2703 7884 1.819928 TTTGCAGGCACGTGACATAT 58.180 45.000 26.11 0.00 0.00 1.78
2711 7892 4.153296 CAGGCACGTGACATATTTGTGTTA 59.847 41.667 26.11 0.00 35.79 2.41
2790 7971 6.749923 ATTGCAGAAAATTCTCCACTACTC 57.250 37.500 0.00 0.00 34.74 2.59
2818 8006 0.394625 AGGAGTCTAGGCCGTGTCTC 60.395 60.000 13.58 13.58 0.00 3.36
2849 8047 5.479724 TGTGGCTGATCATCCTCTAGAATAG 59.520 44.000 16.28 0.00 41.04 1.73
2856 8054 5.263872 TCATCCTCTAGAATAGGACTCCC 57.736 47.826 1.47 0.00 45.78 4.30
2889 8087 6.522625 TGTCTTGATCATCTATAGCTAGCC 57.477 41.667 12.13 0.00 0.00 3.93
2913 8111 6.315891 CCTGTTCAAAATGTTTTCACCATGTT 59.684 34.615 0.00 0.00 0.00 2.71
2972 8171 7.817418 AGAACCTGAAGTATTTTTAAGTGCA 57.183 32.000 0.00 0.00 0.00 4.57
3036 9296 4.861196 ACTGATCAGCTAACTGGAGACTA 58.139 43.478 22.83 0.00 44.59 2.59
3056 9316 3.530265 AGAATCTCTGCTGAGCTCTTG 57.470 47.619 16.19 9.02 40.03 3.02
3065 9325 1.602311 CTGAGCTCTTGTGTTTGCCT 58.398 50.000 16.19 0.00 0.00 4.75
3073 9333 2.158827 TCTTGTGTTTGCCTAGTCTGCA 60.159 45.455 0.00 0.00 36.84 4.41
3125 9385 2.674177 CGTGGAGTAGAACTCGGCAAAT 60.674 50.000 1.23 0.00 45.96 2.32
3149 9409 4.755123 ACAAATGAACTCAGTAAAGACCGG 59.245 41.667 0.00 0.00 0.00 5.28
3177 9437 6.345096 CCAGTAGTTTGACATGGGAAAATT 57.655 37.500 0.00 0.00 0.00 1.82
3222 9483 2.225467 ACTGGAGAAGCAAGAAAGCAC 58.775 47.619 0.00 0.00 36.85 4.40
3316 9583 4.682562 GCAAGAGCAAAAAGAAAGAACG 57.317 40.909 0.00 0.00 41.58 3.95
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 3.418744 GAAGAGCGCTCCCGTCCTC 62.419 68.421 32.94 15.92 36.67 3.71
5 6 3.453679 GAAGAGCGCTCCCGTCCT 61.454 66.667 32.94 11.52 36.67 3.85
6 7 4.516195 GGAAGAGCGCTCCCGTCC 62.516 72.222 32.94 29.55 36.67 4.79
7 8 4.856607 CGGAAGAGCGCTCCCGTC 62.857 72.222 33.65 27.00 37.40 4.79
10 11 4.214327 CTCCGGAAGAGCGCTCCC 62.214 72.222 32.94 25.58 35.31 4.30
17 18 1.403679 CTGTCACTAGCTCCGGAAGAG 59.596 57.143 5.23 5.44 46.29 2.85
18 19 1.004394 TCTGTCACTAGCTCCGGAAGA 59.996 52.381 5.23 0.00 0.00 2.87
19 20 1.403679 CTCTGTCACTAGCTCCGGAAG 59.596 57.143 5.23 2.16 0.00 3.46
20 21 1.004394 TCTCTGTCACTAGCTCCGGAA 59.996 52.381 5.23 0.00 0.00 4.30
21 22 0.618981 TCTCTGTCACTAGCTCCGGA 59.381 55.000 2.93 2.93 0.00 5.14
22 23 1.021202 CTCTCTGTCACTAGCTCCGG 58.979 60.000 0.00 0.00 0.00 5.14
23 24 0.380378 GCTCTCTGTCACTAGCTCCG 59.620 60.000 0.00 0.00 32.18 4.63
24 25 0.744281 GGCTCTCTGTCACTAGCTCC 59.256 60.000 0.00 0.00 35.30 4.70
25 26 1.405105 CAGGCTCTCTGTCACTAGCTC 59.595 57.143 0.00 0.00 38.64 4.09
26 27 1.473258 CAGGCTCTCTGTCACTAGCT 58.527 55.000 0.00 0.00 38.64 3.32
27 28 0.459489 CCAGGCTCTCTGTCACTAGC 59.541 60.000 0.00 0.00 41.83 3.42
28 29 1.110442 CCCAGGCTCTCTGTCACTAG 58.890 60.000 0.00 0.00 41.83 2.57
29 30 0.704664 TCCCAGGCTCTCTGTCACTA 59.295 55.000 0.00 0.00 41.83 2.74
30 31 0.178921 TTCCCAGGCTCTCTGTCACT 60.179 55.000 0.00 0.00 41.83 3.41
31 32 0.036858 GTTCCCAGGCTCTCTGTCAC 60.037 60.000 0.00 0.00 41.83 3.67
32 33 1.536073 CGTTCCCAGGCTCTCTGTCA 61.536 60.000 0.00 0.00 41.83 3.58
33 34 1.216710 CGTTCCCAGGCTCTCTGTC 59.783 63.158 0.00 0.00 41.83 3.51
34 35 2.286523 CCGTTCCCAGGCTCTCTGT 61.287 63.158 0.00 0.00 41.83 3.41
35 36 2.581354 CCGTTCCCAGGCTCTCTG 59.419 66.667 0.00 0.00 43.00 3.35
66 67 4.687215 TGACAGCTCTGCCACCGC 62.687 66.667 0.00 0.00 0.00 5.68
67 68 2.433838 CTGACAGCTCTGCCACCG 60.434 66.667 0.00 0.00 0.00 4.94
68 69 2.745492 GCTGACAGCTCTGCCACC 60.745 66.667 20.41 0.00 38.45 4.61
72 73 4.074526 TCCGGCTGACAGCTCTGC 62.075 66.667 25.92 9.21 41.99 4.26
73 74 2.125753 GTCCGGCTGACAGCTCTG 60.126 66.667 25.92 15.83 43.85 3.35
74 75 3.753434 CGTCCGGCTGACAGCTCT 61.753 66.667 25.92 0.00 44.71 4.09
75 76 3.749064 TCGTCCGGCTGACAGCTC 61.749 66.667 25.92 15.25 44.71 4.09
76 77 4.057428 GTCGTCCGGCTGACAGCT 62.057 66.667 25.92 0.00 44.71 4.24
88 89 3.398353 CTTCCTCCTCCGCGTCGTC 62.398 68.421 4.92 0.00 0.00 4.20
89 90 3.441290 CTTCCTCCTCCGCGTCGT 61.441 66.667 4.92 0.00 0.00 4.34
90 91 2.697761 TTCTTCCTCCTCCGCGTCG 61.698 63.158 4.92 0.00 0.00 5.12
91 92 1.153804 GTTCTTCCTCCTCCGCGTC 60.154 63.158 4.92 0.00 0.00 5.19
92 93 1.878656 CTGTTCTTCCTCCTCCGCGT 61.879 60.000 4.92 0.00 0.00 6.01
93 94 1.153745 CTGTTCTTCCTCCTCCGCG 60.154 63.158 0.00 0.00 0.00 6.46
94 95 0.174617 CTCTGTTCTTCCTCCTCCGC 59.825 60.000 0.00 0.00 0.00 5.54
95 96 0.820871 CCTCTGTTCTTCCTCCTCCG 59.179 60.000 0.00 0.00 0.00 4.63
96 97 2.107366 CTCCTCTGTTCTTCCTCCTCC 58.893 57.143 0.00 0.00 0.00 4.30
97 98 3.023832 CTCTCCTCTGTTCTTCCTCCTC 58.976 54.545 0.00 0.00 0.00 3.71
98 99 2.652348 TCTCTCCTCTGTTCTTCCTCCT 59.348 50.000 0.00 0.00 0.00 3.69
99 100 3.023832 CTCTCTCCTCTGTTCTTCCTCC 58.976 54.545 0.00 0.00 0.00 4.30
100 101 2.427095 GCTCTCTCCTCTGTTCTTCCTC 59.573 54.545 0.00 0.00 0.00 3.71
101 102 2.225242 TGCTCTCTCCTCTGTTCTTCCT 60.225 50.000 0.00 0.00 0.00 3.36
102 103 2.175202 TGCTCTCTCCTCTGTTCTTCC 58.825 52.381 0.00 0.00 0.00 3.46
103 104 3.951775 TTGCTCTCTCCTCTGTTCTTC 57.048 47.619 0.00 0.00 0.00 2.87
104 105 4.565236 CCATTTGCTCTCTCCTCTGTTCTT 60.565 45.833 0.00 0.00 0.00 2.52
105 106 3.055240 CCATTTGCTCTCTCCTCTGTTCT 60.055 47.826 0.00 0.00 0.00 3.01
106 107 3.055530 TCCATTTGCTCTCTCCTCTGTTC 60.056 47.826 0.00 0.00 0.00 3.18
107 108 2.909006 TCCATTTGCTCTCTCCTCTGTT 59.091 45.455 0.00 0.00 0.00 3.16
108 109 2.544721 TCCATTTGCTCTCTCCTCTGT 58.455 47.619 0.00 0.00 0.00 3.41
109 110 3.842007 ATCCATTTGCTCTCTCCTCTG 57.158 47.619 0.00 0.00 0.00 3.35
110 111 3.181467 CGAATCCATTTGCTCTCTCCTCT 60.181 47.826 0.00 0.00 0.00 3.69
111 112 3.129871 CGAATCCATTTGCTCTCTCCTC 58.870 50.000 0.00 0.00 0.00 3.71
112 113 2.768527 TCGAATCCATTTGCTCTCTCCT 59.231 45.455 0.00 0.00 0.00 3.69
113 114 3.185246 TCGAATCCATTTGCTCTCTCC 57.815 47.619 0.00 0.00 0.00 3.71
114 115 5.537188 ACTATCGAATCCATTTGCTCTCTC 58.463 41.667 0.00 0.00 0.00 3.20
115 116 5.543507 ACTATCGAATCCATTTGCTCTCT 57.456 39.130 0.00 0.00 0.00 3.10
116 117 6.425504 CAAACTATCGAATCCATTTGCTCTC 58.574 40.000 0.00 0.00 0.00 3.20
117 118 5.297776 CCAAACTATCGAATCCATTTGCTCT 59.702 40.000 0.00 0.00 0.00 4.09
118 119 5.506317 CCCAAACTATCGAATCCATTTGCTC 60.506 44.000 0.00 0.00 0.00 4.26
119 120 4.339247 CCCAAACTATCGAATCCATTTGCT 59.661 41.667 0.00 0.00 0.00 3.91
120 121 4.499696 CCCCAAACTATCGAATCCATTTGC 60.500 45.833 0.00 0.00 0.00 3.68
121 122 4.037923 CCCCCAAACTATCGAATCCATTTG 59.962 45.833 0.00 0.00 0.00 2.32
122 123 4.215109 CCCCCAAACTATCGAATCCATTT 58.785 43.478 0.00 0.00 0.00 2.32
123 124 3.832527 CCCCCAAACTATCGAATCCATT 58.167 45.455 0.00 0.00 0.00 3.16
124 125 3.508845 CCCCCAAACTATCGAATCCAT 57.491 47.619 0.00 0.00 0.00 3.41
146 147 1.339920 CCAAATTGCACCAAATCCCCC 60.340 52.381 0.00 0.00 0.00 5.40
147 148 1.339920 CCCAAATTGCACCAAATCCCC 60.340 52.381 0.00 0.00 0.00 4.81
148 149 1.950015 GCCCAAATTGCACCAAATCCC 60.950 52.381 0.00 0.00 0.00 3.85
149 150 1.003464 AGCCCAAATTGCACCAAATCC 59.997 47.619 0.00 0.00 0.00 3.01
150 151 2.078392 CAGCCCAAATTGCACCAAATC 58.922 47.619 0.00 0.00 0.00 2.17
151 152 1.271488 CCAGCCCAAATTGCACCAAAT 60.271 47.619 0.00 0.00 0.00 2.32
152 153 0.108207 CCAGCCCAAATTGCACCAAA 59.892 50.000 0.00 0.00 0.00 3.28
153 154 1.753470 CCAGCCCAAATTGCACCAA 59.247 52.632 0.00 0.00 0.00 3.67
154 155 2.215625 CCCAGCCCAAATTGCACCA 61.216 57.895 0.00 0.00 0.00 4.17
155 156 2.216331 ACCCAGCCCAAATTGCACC 61.216 57.895 0.00 0.00 0.00 5.01
156 157 1.004679 CACCCAGCCCAAATTGCAC 60.005 57.895 0.00 0.00 0.00 4.57
157 158 2.215625 CCACCCAGCCCAAATTGCA 61.216 57.895 0.00 0.00 0.00 4.08
158 159 2.664398 CCACCCAGCCCAAATTGC 59.336 61.111 0.00 0.00 0.00 3.56
159 160 2.292559 CCCCACCCAGCCCAAATTG 61.293 63.158 0.00 0.00 0.00 2.32
160 161 2.122504 CCCCACCCAGCCCAAATT 59.877 61.111 0.00 0.00 0.00 1.82
161 162 2.800496 AACCCCACCCAGCCCAAAT 61.800 57.895 0.00 0.00 0.00 2.32
162 163 3.443479 AACCCCACCCAGCCCAAA 61.443 61.111 0.00 0.00 0.00 3.28
163 164 4.232061 CAACCCCACCCAGCCCAA 62.232 66.667 0.00 0.00 0.00 4.12
165 166 4.678743 GACAACCCCACCCAGCCC 62.679 72.222 0.00 0.00 0.00 5.19
168 169 4.344865 CCCGACAACCCCACCCAG 62.345 72.222 0.00 0.00 0.00 4.45
170 171 4.340246 GACCCGACAACCCCACCC 62.340 72.222 0.00 0.00 0.00 4.61
171 172 3.246880 AGACCCGACAACCCCACC 61.247 66.667 0.00 0.00 0.00 4.61
172 173 1.838073 ATCAGACCCGACAACCCCAC 61.838 60.000 0.00 0.00 0.00 4.61
173 174 1.537889 ATCAGACCCGACAACCCCA 60.538 57.895 0.00 0.00 0.00 4.96
174 175 1.078426 CATCAGACCCGACAACCCC 60.078 63.158 0.00 0.00 0.00 4.95
175 176 0.673644 CACATCAGACCCGACAACCC 60.674 60.000 0.00 0.00 0.00 4.11
176 177 1.298859 GCACATCAGACCCGACAACC 61.299 60.000 0.00 0.00 0.00 3.77
177 178 1.298859 GGCACATCAGACCCGACAAC 61.299 60.000 0.00 0.00 0.00 3.32
178 179 1.003839 GGCACATCAGACCCGACAA 60.004 57.895 0.00 0.00 0.00 3.18
179 180 2.662596 GGCACATCAGACCCGACA 59.337 61.111 0.00 0.00 0.00 4.35
180 181 2.509336 CGGCACATCAGACCCGAC 60.509 66.667 0.00 0.00 43.20 4.79
181 182 3.770040 CCGGCACATCAGACCCGA 61.770 66.667 0.00 0.00 43.20 5.14
182 183 4.838152 CCCGGCACATCAGACCCG 62.838 72.222 0.00 0.00 40.39 5.28
204 205 4.394712 GATATGAGGCCGCCCGGG 62.395 72.222 19.09 19.09 39.58 5.73
205 206 4.394712 GGATATGAGGCCGCCCGG 62.395 72.222 5.55 1.59 35.76 5.73
206 207 4.742201 CGGATATGAGGCCGCCCG 62.742 72.222 5.55 5.70 41.17 6.13
212 213 0.839946 ATATGGGGCGGATATGAGGC 59.160 55.000 0.00 0.00 0.00 4.70
213 214 3.282021 CAAATATGGGGCGGATATGAGG 58.718 50.000 0.00 0.00 0.00 3.86
214 215 3.282021 CCAAATATGGGGCGGATATGAG 58.718 50.000 0.00 0.00 43.51 2.90
215 216 3.364460 CCAAATATGGGGCGGATATGA 57.636 47.619 0.00 0.00 43.51 2.15
226 227 3.368248 CCCATATCCAGCCCAAATATGG 58.632 50.000 11.86 11.86 46.37 2.74
227 228 3.368248 CCCCATATCCAGCCCAAATATG 58.632 50.000 0.00 0.00 34.55 1.78
228 229 2.315763 CCCCCATATCCAGCCCAAATAT 59.684 50.000 0.00 0.00 0.00 1.28
229 230 1.715931 CCCCCATATCCAGCCCAAATA 59.284 52.381 0.00 0.00 0.00 1.40
230 231 0.488668 CCCCCATATCCAGCCCAAAT 59.511 55.000 0.00 0.00 0.00 2.32
231 232 1.937541 CCCCCATATCCAGCCCAAA 59.062 57.895 0.00 0.00 0.00 3.28
232 233 3.686647 CCCCCATATCCAGCCCAA 58.313 61.111 0.00 0.00 0.00 4.12
246 247 2.930562 AGACTGACCTGCACCCCC 60.931 66.667 0.00 0.00 0.00 5.40
247 248 2.348998 CAGACTGACCTGCACCCC 59.651 66.667 0.00 0.00 0.00 4.95
248 249 2.348998 CCAGACTGACCTGCACCC 59.651 66.667 3.32 0.00 32.97 4.61
249 250 2.348998 CCCAGACTGACCTGCACC 59.651 66.667 3.32 0.00 32.97 5.01
250 251 2.359230 GCCCAGACTGACCTGCAC 60.359 66.667 3.32 0.00 32.97 4.57
251 252 1.782201 AATGCCCAGACTGACCTGCA 61.782 55.000 3.32 7.62 32.97 4.41
252 253 0.610232 AAATGCCCAGACTGACCTGC 60.610 55.000 3.32 1.86 32.97 4.85
253 254 1.171308 CAAATGCCCAGACTGACCTG 58.829 55.000 3.32 0.00 0.00 4.00
254 255 0.038744 CCAAATGCCCAGACTGACCT 59.961 55.000 3.32 0.00 0.00 3.85
255 256 0.967380 CCCAAATGCCCAGACTGACC 60.967 60.000 3.32 0.00 0.00 4.02
256 257 0.038166 TCCCAAATGCCCAGACTGAC 59.962 55.000 3.32 0.00 0.00 3.51
257 258 0.329261 CTCCCAAATGCCCAGACTGA 59.671 55.000 3.32 0.00 0.00 3.41
258 259 0.682209 CCTCCCAAATGCCCAGACTG 60.682 60.000 0.00 0.00 0.00 3.51
259 260 1.693640 CCTCCCAAATGCCCAGACT 59.306 57.895 0.00 0.00 0.00 3.24
260 261 2.054453 GCCTCCCAAATGCCCAGAC 61.054 63.158 0.00 0.00 0.00 3.51
261 262 2.360191 GCCTCCCAAATGCCCAGA 59.640 61.111 0.00 0.00 0.00 3.86
262 263 2.761213 GGCCTCCCAAATGCCCAG 60.761 66.667 0.00 0.00 39.30 4.45
265 266 4.759205 ACGGGCCTCCCAAATGCC 62.759 66.667 0.84 0.00 45.83 4.40
266 267 3.140814 GACGGGCCTCCCAAATGC 61.141 66.667 0.84 0.00 45.83 3.56
267 268 1.750399 CAGACGGGCCTCCCAAATG 60.750 63.158 0.84 0.00 45.83 2.32
268 269 2.677228 CAGACGGGCCTCCCAAAT 59.323 61.111 0.84 0.00 45.83 2.32
269 270 3.646715 CCAGACGGGCCTCCCAAA 61.647 66.667 0.84 0.00 45.83 3.28
291 292 1.862602 GCTGCCCGGTCACGATTTTT 61.863 55.000 0.00 0.00 44.60 1.94
292 293 2.332654 GCTGCCCGGTCACGATTTT 61.333 57.895 0.00 0.00 44.60 1.82
293 294 2.746277 GCTGCCCGGTCACGATTT 60.746 61.111 0.00 0.00 44.60 2.17
327 328 3.976701 AACCTGCCTCATTCGCCCG 62.977 63.158 0.00 0.00 0.00 6.13
328 329 1.678970 AAACCTGCCTCATTCGCCC 60.679 57.895 0.00 0.00 0.00 6.13
329 330 0.960364 TCAAACCTGCCTCATTCGCC 60.960 55.000 0.00 0.00 0.00 5.54
330 331 0.449388 CTCAAACCTGCCTCATTCGC 59.551 55.000 0.00 0.00 0.00 4.70
331 332 2.005451 CTCTCAAACCTGCCTCATTCG 58.995 52.381 0.00 0.00 0.00 3.34
332 333 2.290577 ACCTCTCAAACCTGCCTCATTC 60.291 50.000 0.00 0.00 0.00 2.67
333 334 1.707427 ACCTCTCAAACCTGCCTCATT 59.293 47.619 0.00 0.00 0.00 2.57
334 335 1.280421 GACCTCTCAAACCTGCCTCAT 59.720 52.381 0.00 0.00 0.00 2.90
335 336 0.687354 GACCTCTCAAACCTGCCTCA 59.313 55.000 0.00 0.00 0.00 3.86
336 337 0.035915 GGACCTCTCAAACCTGCCTC 60.036 60.000 0.00 0.00 0.00 4.70
337 338 1.831652 CGGACCTCTCAAACCTGCCT 61.832 60.000 0.00 0.00 0.00 4.75
338 339 1.376037 CGGACCTCTCAAACCTGCC 60.376 63.158 0.00 0.00 0.00 4.85
339 340 1.376037 CCGGACCTCTCAAACCTGC 60.376 63.158 0.00 0.00 0.00 4.85
340 341 0.396811 AACCGGACCTCTCAAACCTG 59.603 55.000 9.46 0.00 0.00 4.00
341 342 0.396811 CAACCGGACCTCTCAAACCT 59.603 55.000 9.46 0.00 0.00 3.50
342 343 0.108019 ACAACCGGACCTCTCAAACC 59.892 55.000 9.46 0.00 0.00 3.27
343 344 2.224113 TGTACAACCGGACCTCTCAAAC 60.224 50.000 9.46 0.00 0.00 2.93
344 345 2.040939 TGTACAACCGGACCTCTCAAA 58.959 47.619 9.46 0.00 0.00 2.69
345 346 1.707106 TGTACAACCGGACCTCTCAA 58.293 50.000 9.46 0.00 0.00 3.02
346 347 1.548719 CATGTACAACCGGACCTCTCA 59.451 52.381 9.46 0.00 0.00 3.27
347 348 1.739371 GCATGTACAACCGGACCTCTC 60.739 57.143 9.46 0.00 0.00 3.20
348 349 0.249398 GCATGTACAACCGGACCTCT 59.751 55.000 9.46 0.00 0.00 3.69
349 350 0.249398 AGCATGTACAACCGGACCTC 59.751 55.000 9.46 0.00 0.00 3.85
350 351 0.249398 GAGCATGTACAACCGGACCT 59.751 55.000 9.46 0.00 0.00 3.85
351 352 0.249398 AGAGCATGTACAACCGGACC 59.751 55.000 9.46 0.00 0.00 4.46
352 353 2.953466 TAGAGCATGTACAACCGGAC 57.047 50.000 9.46 0.00 0.00 4.79
353 354 3.704566 AGATTAGAGCATGTACAACCGGA 59.295 43.478 9.46 0.00 0.00 5.14
354 355 4.051922 GAGATTAGAGCATGTACAACCGG 58.948 47.826 0.00 0.00 0.00 5.28
355 356 4.682787 TGAGATTAGAGCATGTACAACCG 58.317 43.478 0.00 0.00 0.00 4.44
356 357 5.874810 TGTTGAGATTAGAGCATGTACAACC 59.125 40.000 0.00 0.00 35.69 3.77
357 358 6.968131 TGTTGAGATTAGAGCATGTACAAC 57.032 37.500 0.00 0.00 36.62 3.32
358 359 7.443879 TGTTTGTTGAGATTAGAGCATGTACAA 59.556 33.333 0.00 0.00 0.00 2.41
359 360 6.934083 TGTTTGTTGAGATTAGAGCATGTACA 59.066 34.615 0.00 0.00 0.00 2.90
360 361 7.364522 TGTTTGTTGAGATTAGAGCATGTAC 57.635 36.000 0.00 0.00 0.00 2.90
361 362 7.977789 TTGTTTGTTGAGATTAGAGCATGTA 57.022 32.000 0.00 0.00 0.00 2.29
362 363 6.882610 TTGTTTGTTGAGATTAGAGCATGT 57.117 33.333 0.00 0.00 0.00 3.21
363 364 7.487189 GGATTTGTTTGTTGAGATTAGAGCATG 59.513 37.037 0.00 0.00 0.00 4.06
364 365 7.177216 TGGATTTGTTTGTTGAGATTAGAGCAT 59.823 33.333 0.00 0.00 0.00 3.79
365 366 6.489700 TGGATTTGTTTGTTGAGATTAGAGCA 59.510 34.615 0.00 0.00 0.00 4.26
366 367 6.803807 GTGGATTTGTTTGTTGAGATTAGAGC 59.196 38.462 0.00 0.00 0.00 4.09
367 368 7.308435 GGTGGATTTGTTTGTTGAGATTAGAG 58.692 38.462 0.00 0.00 0.00 2.43
368 369 6.072728 CGGTGGATTTGTTTGTTGAGATTAGA 60.073 38.462 0.00 0.00 0.00 2.10
487 490 7.267128 CCATTTTGAGCCATTAAGCATTAAGA 58.733 34.615 0.00 0.00 44.82 2.10
511 514 2.559231 TCCATTTCAAAACGTAAGGCCC 59.441 45.455 0.00 0.00 46.39 5.80
519 522 3.674753 GCAACTCCATCCATTTCAAAACG 59.325 43.478 0.00 0.00 0.00 3.60
570 3607 4.910195 TGTCATCAGCTGTACAAATTCCT 58.090 39.130 14.67 0.00 0.00 3.36
645 3687 1.472480 CTCCCGATCCGCACAAAAATT 59.528 47.619 0.00 0.00 0.00 1.82
648 3690 2.038269 GCTCCCGATCCGCACAAAA 61.038 57.895 0.00 0.00 0.00 2.44
671 3713 3.006940 CGCCTGGTATTAGCTTTCACAA 58.993 45.455 0.00 0.00 0.00 3.33
687 3729 2.377310 CCGGTAAACGTCACGCCTG 61.377 63.158 0.00 0.00 42.24 4.85
713 3755 1.171549 TGTGTGCACCGTACGAGGTA 61.172 55.000 18.76 4.75 43.89 3.08
733 3775 3.467374 TTCTTGCAAATGGGTGTTTCC 57.533 42.857 0.00 0.00 0.00 3.13
814 3856 8.697846 ATGAACTGAATTTATCATGCAACTTG 57.302 30.769 0.00 0.00 37.44 3.16
818 3860 8.305317 TGTGAATGAACTGAATTTATCATGCAA 58.695 29.630 0.00 0.00 39.06 4.08
819 3861 7.828712 TGTGAATGAACTGAATTTATCATGCA 58.171 30.769 0.00 0.00 35.87 3.96
820 3862 7.972277 ACTGTGAATGAACTGAATTTATCATGC 59.028 33.333 0.00 0.00 37.44 4.06
821 3863 9.499585 GACTGTGAATGAACTGAATTTATCATG 57.500 33.333 0.00 0.00 37.44 3.07
822 3864 8.680903 GGACTGTGAATGAACTGAATTTATCAT 58.319 33.333 0.00 0.00 37.44 2.45
823 3865 7.884877 AGGACTGTGAATGAACTGAATTTATCA 59.115 33.333 0.00 0.00 36.38 2.15
824 3866 8.180267 CAGGACTGTGAATGAACTGAATTTATC 58.820 37.037 0.00 0.00 0.00 1.75
827 3869 5.278660 GCAGGACTGTGAATGAACTGAATTT 60.279 40.000 0.82 0.00 0.00 1.82
829 3871 3.755378 GCAGGACTGTGAATGAACTGAAT 59.245 43.478 0.82 0.00 0.00 2.57
869 4037 1.207089 TCGCTCCAGTGGTCCAATTAG 59.793 52.381 9.54 0.00 0.00 1.73
937 4126 8.669571 ACCCAACTCCTTAATTATATATGTGCT 58.330 33.333 0.00 0.00 0.00 4.40
938 4127 8.863872 ACCCAACTCCTTAATTATATATGTGC 57.136 34.615 0.00 0.00 0.00 4.57
972 4162 7.589958 AGCTCTTCGATCTCCTTAATTAAGA 57.410 36.000 23.95 7.25 35.33 2.10
1030 4227 2.161211 GCCTTCTGCTCATGTTCTCAAC 59.839 50.000 0.00 0.00 36.87 3.18
1075 4272 3.067833 GTGCTTTCTTCAGTAGACCACC 58.932 50.000 0.00 0.00 30.90 4.61
1080 4277 3.857383 GCTCACGTGCTTTCTTCAGTAGA 60.857 47.826 11.67 0.00 0.00 2.59
1083 4280 1.202580 AGCTCACGTGCTTTCTTCAGT 60.203 47.619 11.67 0.00 40.93 3.41
1134 4331 3.695060 GACAAGTGGAGGAGAAGACGATA 59.305 47.826 0.00 0.00 0.00 2.92
1218 4415 8.567948 TCTTGTGAAGATTGGTAGTTTTGAATC 58.432 33.333 0.00 0.00 31.20 2.52
1237 4434 2.556144 AGCTGATGTTGCTCTTGTGA 57.444 45.000 0.00 0.00 35.67 3.58
1257 4455 3.070018 GACTTGTGACACTGGATTCAGG 58.930 50.000 5.84 0.00 44.99 3.86
1364 4572 1.468054 GGCCGTCAAAGTTGCATCATC 60.468 52.381 0.00 0.00 0.00 2.92
1381 4597 8.474831 ACCAACTTATTTACAATAGAATTGGCC 58.525 33.333 0.00 0.00 0.00 5.36
1446 4667 6.018832 TCACACATGAGCATAACATCATTACG 60.019 38.462 0.00 0.00 0.00 3.18
1571 4861 8.897872 AGTGGTACTATTATGGGTATTTTTCG 57.102 34.615 0.00 0.00 0.00 3.46
1676 4971 9.691362 TGCCAAAACTAGAAAGAAAAATACATC 57.309 29.630 0.00 0.00 0.00 3.06
1680 4975 8.147704 CCCTTGCCAAAACTAGAAAGAAAAATA 58.852 33.333 0.00 0.00 0.00 1.40
1687 4985 3.496331 TCCCCTTGCCAAAACTAGAAAG 58.504 45.455 0.00 0.00 0.00 2.62
1766 5064 8.966868 GGTATCAATGGAAGGAACTGAATTAAA 58.033 33.333 0.00 0.00 40.86 1.52
1824 5347 7.893124 ATAGGATGACTTGAATGCATTTTCT 57.107 32.000 14.33 2.18 0.00 2.52
1846 5369 8.635765 AGCTTCCTGAAAGTCAAACAATAATA 57.364 30.769 0.00 0.00 37.31 0.98
2064 5624 5.391312 AAAACAGGCATCAGGAAACATAC 57.609 39.130 0.00 0.00 0.00 2.39
2066 5626 4.463891 CCTAAAACAGGCATCAGGAAACAT 59.536 41.667 0.00 0.00 37.70 2.71
2070 5630 4.079253 GTTCCTAAAACAGGCATCAGGAA 58.921 43.478 0.00 0.00 45.10 3.36
2078 5638 4.098807 TGGAACTTTGTTCCTAAAACAGGC 59.901 41.667 24.25 1.55 45.10 4.85
2083 5643 5.105269 GGTTGGTGGAACTTTGTTCCTAAAA 60.105 40.000 24.25 15.01 39.31 1.52
2099 7195 5.496556 TGAGTTGTAGAATATGGTTGGTGG 58.503 41.667 0.00 0.00 0.00 4.61
2212 7310 7.603297 ATCACGAACGAAATGTAACTTTTTG 57.397 32.000 0.14 0.00 0.00 2.44
2228 7326 6.129194 GGTTGCTTTGTTGAATTATCACGAAC 60.129 38.462 0.00 0.00 34.61 3.95
2230 7328 5.240623 AGGTTGCTTTGTTGAATTATCACGA 59.759 36.000 0.00 0.00 34.61 4.35
2256 7355 5.618236 TCTTGATGAAAGATGCATCCCTAG 58.382 41.667 23.06 11.10 40.09 3.02
2335 7466 8.863086 TCAAAGCTACTTAGTTACCTTGTTCTA 58.137 33.333 0.00 0.00 0.00 2.10
2404 7569 5.244626 ACAAAGCTGAAACCAATATCAAGCT 59.755 36.000 0.00 0.00 34.07 3.74
2432 7598 3.539604 CACCCTTAGAAGAGCCATTCAG 58.460 50.000 1.76 0.00 0.00 3.02
2500 7666 3.710209 AATTGGCAGAACTAGTGCTCT 57.290 42.857 0.00 0.00 40.97 4.09
2538 7715 5.304101 ACCACAAAGCTGAAACCAATATCAA 59.696 36.000 0.00 0.00 0.00 2.57
2540 7717 5.391312 ACCACAAAGCTGAAACCAATATC 57.609 39.130 0.00 0.00 0.00 1.63
2541 7718 6.010219 ACTACCACAAAGCTGAAACCAATAT 58.990 36.000 0.00 0.00 0.00 1.28
2542 7719 5.381757 ACTACCACAAAGCTGAAACCAATA 58.618 37.500 0.00 0.00 0.00 1.90
2543 7720 4.215109 ACTACCACAAAGCTGAAACCAAT 58.785 39.130 0.00 0.00 0.00 3.16
2544 7721 3.626930 ACTACCACAAAGCTGAAACCAA 58.373 40.909 0.00 0.00 0.00 3.67
2545 7722 3.290948 ACTACCACAAAGCTGAAACCA 57.709 42.857 0.00 0.00 0.00 3.67
2546 7723 3.630312 TCAACTACCACAAAGCTGAAACC 59.370 43.478 0.00 0.00 0.00 3.27
2547 7724 4.335594 ACTCAACTACCACAAAGCTGAAAC 59.664 41.667 0.00 0.00 0.00 2.78
2548 7725 4.523083 ACTCAACTACCACAAAGCTGAAA 58.477 39.130 0.00 0.00 0.00 2.69
2549 7726 4.150897 ACTCAACTACCACAAAGCTGAA 57.849 40.909 0.00 0.00 0.00 3.02
2550 7727 3.838244 ACTCAACTACCACAAAGCTGA 57.162 42.857 0.00 0.00 0.00 4.26
2551 7728 3.876914 TGAACTCAACTACCACAAAGCTG 59.123 43.478 0.00 0.00 0.00 4.24
2552 7729 3.877508 GTGAACTCAACTACCACAAAGCT 59.122 43.478 0.00 0.00 0.00 3.74
2553 7730 3.625764 TGTGAACTCAACTACCACAAAGC 59.374 43.478 0.00 0.00 35.16 3.51
2554 7731 4.876107 ACTGTGAACTCAACTACCACAAAG 59.124 41.667 0.00 0.00 37.31 2.77
2555 7732 4.839121 ACTGTGAACTCAACTACCACAAA 58.161 39.130 0.00 0.00 37.31 2.83
2558 7735 4.873827 TGAAACTGTGAACTCAACTACCAC 59.126 41.667 0.00 0.00 0.00 4.16
2582 7759 2.298163 ACTCCCAGCTTCTGCATTTTTG 59.702 45.455 0.00 0.00 42.74 2.44
2586 7764 1.074405 TCAACTCCCAGCTTCTGCATT 59.926 47.619 0.00 0.00 42.74 3.56
2690 7871 3.552604 AACACAAATATGTCACGTGCC 57.447 42.857 11.67 0.00 37.82 5.01
2693 7874 7.820386 TCAATACCTAACACAAATATGTCACGT 59.180 33.333 0.00 0.00 37.82 4.49
2699 7880 9.864034 GACGAATCAATACCTAACACAAATATG 57.136 33.333 0.00 0.00 0.00 1.78
2703 7884 7.915293 ATGACGAATCAATACCTAACACAAA 57.085 32.000 0.00 0.00 38.69 2.83
2711 7892 9.534565 GCACATATATATGACGAATCAATACCT 57.465 33.333 26.05 0.00 38.69 3.08
2790 7971 3.153919 GGCCTAGACTCCTACATGAGAG 58.846 54.545 0.00 5.16 36.22 3.20
2818 8006 2.681848 GGATGATCAGCCACACTTGAAG 59.318 50.000 25.01 0.00 36.74 3.02
2849 8047 2.628657 AGACAACTATATGCGGGAGTCC 59.371 50.000 0.00 0.00 0.00 3.85
2856 8054 8.923609 ATAGATGATCAAGACAACTATATGCG 57.076 34.615 0.00 0.00 33.71 4.73
2889 8087 6.907206 ACATGGTGAAAACATTTTGAACAG 57.093 33.333 0.00 0.00 34.60 3.16
3036 9296 2.833338 ACAAGAGCTCAGCAGAGATTCT 59.167 45.455 17.77 8.80 41.38 2.40
3093 9353 3.770040 CTCCACGGGATCACGGCA 61.770 66.667 23.42 3.51 38.39 5.69
3125 9385 5.929992 CCGGTCTTTACTGAGTTCATTTGTA 59.070 40.000 0.00 0.00 33.42 2.41
3149 9409 4.766404 CCATGTCAAACTACTGGGAAAC 57.234 45.455 0.00 0.00 0.00 2.78
3222 9483 0.179936 GAGGCACTGATTCTCCCTGG 59.820 60.000 0.00 0.00 41.55 4.45
3279 9544 3.329386 TCTTGCATCAGCTCAGTTGTAC 58.671 45.455 0.00 0.00 42.74 2.90
3315 9582 4.111198 CACTCTGATCTGATCTGGTTTCG 58.889 47.826 20.10 9.47 0.00 3.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.