Multiple sequence alignment - TraesCS7B01G009000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G009000 chr7B 100.000 3355 0 0 1 3355 5502197 5505551 0.000000e+00 6196.0
1 TraesCS7B01G009000 chr7B 88.610 2388 238 21 997 3355 5282137 5284519 0.000000e+00 2872.0
2 TraesCS7B01G009000 chr7B 87.364 2390 247 38 997 3355 5216556 5218921 0.000000e+00 2689.0
3 TraesCS7B01G009000 chr7B 88.464 1335 135 18 2036 3355 5196736 5198066 0.000000e+00 1594.0
4 TraesCS7B01G009000 chr7B 90.922 683 46 7 325 997 5317269 5317945 0.000000e+00 904.0
5 TraesCS7B01G009000 chr7B 86.266 466 36 10 547 998 5281634 5282085 6.510000e-132 481.0
6 TraesCS7B01G009000 chr7B 85.379 383 48 7 619 998 5509735 5510112 1.130000e-104 390.0
7 TraesCS7B01G009000 chr7B 79.437 355 46 11 648 998 5216174 5216505 3.370000e-55 226.0
8 TraesCS7B01G009000 chr7B 94.737 38 0 1 614 651 5281634 5281669 1.300000e-04 58.4
9 TraesCS7B01G009000 chr7D 94.167 2366 131 3 997 3355 64265809 64268174 0.000000e+00 3598.0
10 TraesCS7B01G009000 chr7D 87.537 2391 253 28 997 3355 64245432 64247809 0.000000e+00 2723.0
11 TraesCS7B01G009000 chr7D 85.941 2397 282 34 1000 3355 63943731 63941349 0.000000e+00 2508.0
12 TraesCS7B01G009000 chr7D 90.498 1326 110 11 2036 3355 59938320 59937005 0.000000e+00 1736.0
13 TraesCS7B01G009000 chr7D 88.466 919 100 3 998 1910 59939541 59938623 0.000000e+00 1105.0
14 TraesCS7B01G009000 chr7D 90.188 693 45 10 323 997 64265068 64265755 0.000000e+00 881.0
15 TraesCS7B01G009000 chr7A 87.729 3113 279 46 323 3355 67984425 67987514 0.000000e+00 3537.0
16 TraesCS7B01G009000 chr7A 88.523 2675 249 19 734 3355 68028894 68031563 0.000000e+00 3186.0
17 TraesCS7B01G009000 chr7A 86.647 1700 188 24 1000 2667 67592985 67591293 0.000000e+00 1845.0
18 TraesCS7B01G009000 chr7A 89.374 894 89 5 997 1887 68077099 68077989 0.000000e+00 1120.0
19 TraesCS7B01G009000 chr7A 89.016 701 33 16 326 998 67593725 67593041 0.000000e+00 828.0
20 TraesCS7B01G009000 chr7A 86.284 401 44 9 604 998 68076650 68077045 3.090000e-115 425.0
21 TraesCS7B01G009000 chr7A 89.399 283 18 6 17 292 68042501 68042778 2.480000e-91 346.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G009000 chr7B 5502197 5505551 3354 False 6196.000000 6196 100.0000 1 3355 1 chr7B.!!$F3 3354
1 TraesCS7B01G009000 chr7B 5196736 5198066 1330 False 1594.000000 1594 88.4640 2036 3355 1 chr7B.!!$F1 1319
2 TraesCS7B01G009000 chr7B 5216174 5218921 2747 False 1457.500000 2689 83.4005 648 3355 2 chr7B.!!$F5 2707
3 TraesCS7B01G009000 chr7B 5281634 5284519 2885 False 1137.133333 2872 89.8710 547 3355 3 chr7B.!!$F6 2808
4 TraesCS7B01G009000 chr7B 5317269 5317945 676 False 904.000000 904 90.9220 325 997 1 chr7B.!!$F2 672
5 TraesCS7B01G009000 chr7D 64245432 64247809 2377 False 2723.000000 2723 87.5370 997 3355 1 chr7D.!!$F1 2358
6 TraesCS7B01G009000 chr7D 63941349 63943731 2382 True 2508.000000 2508 85.9410 1000 3355 1 chr7D.!!$R1 2355
7 TraesCS7B01G009000 chr7D 64265068 64268174 3106 False 2239.500000 3598 92.1775 323 3355 2 chr7D.!!$F2 3032
8 TraesCS7B01G009000 chr7D 59937005 59939541 2536 True 1420.500000 1736 89.4820 998 3355 2 chr7D.!!$R2 2357
9 TraesCS7B01G009000 chr7A 67984425 67987514 3089 False 3537.000000 3537 87.7290 323 3355 1 chr7A.!!$F1 3032
10 TraesCS7B01G009000 chr7A 68028894 68031563 2669 False 3186.000000 3186 88.5230 734 3355 1 chr7A.!!$F2 2621
11 TraesCS7B01G009000 chr7A 67591293 67593725 2432 True 1336.500000 1845 87.8315 326 2667 2 chr7A.!!$R1 2341
12 TraesCS7B01G009000 chr7A 68076650 68077989 1339 False 772.500000 1120 87.8290 604 1887 2 chr7A.!!$F4 1283

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
258 259 0.038892 GGGAGCTGTTACGTTCACGA 60.039 55.0 6.3 0.0 43.02 4.35 F
313 314 0.102481 CCTATTAGAGCCGTGCGTGT 59.898 55.0 0.0 0.0 0.00 4.49 F
1278 1427 0.471780 TGGGTGAGAGTTCAGGCAGA 60.472 55.0 0.0 0.0 32.98 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1559 1708 0.247736 CTCCTTGGAACTCCTGTCCG 59.752 60.000 0.00 0.00 36.82 4.79 R
1564 1713 1.072965 CAAGTGCTCCTTGGAACTCCT 59.927 52.381 8.34 0.00 45.70 3.69 R
3210 3583 0.846015 TGCCTATGTCCATTGGGAGG 59.154 55.000 2.09 6.23 46.12 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.850752 ATTTGACCGAAAATGATTTACCCT 57.149 33.333 0.00 0.00 0.00 4.34
24 25 7.948034 ATTTGACCGAAAATGATTTACCCTA 57.052 32.000 0.00 0.00 0.00 3.53
25 26 7.762588 TTTGACCGAAAATGATTTACCCTAA 57.237 32.000 0.00 0.00 0.00 2.69
26 27 7.948034 TTGACCGAAAATGATTTACCCTAAT 57.052 32.000 0.00 0.00 0.00 1.73
27 28 9.463902 TTTGACCGAAAATGATTTACCCTAATA 57.536 29.630 0.00 0.00 0.00 0.98
28 29 8.441312 TGACCGAAAATGATTTACCCTAATAC 57.559 34.615 0.00 0.00 0.00 1.89
29 30 8.269317 TGACCGAAAATGATTTACCCTAATACT 58.731 33.333 0.00 0.00 0.00 2.12
30 31 9.768662 GACCGAAAATGATTTACCCTAATACTA 57.231 33.333 0.00 0.00 0.00 1.82
45 46 7.980099 ACCCTAATACTAACTTCAAGTTCATCG 59.020 37.037 5.92 0.00 39.51 3.84
46 47 8.195436 CCCTAATACTAACTTCAAGTTCATCGA 58.805 37.037 5.92 0.00 39.51 3.59
47 48 9.582431 CCTAATACTAACTTCAAGTTCATCGAA 57.418 33.333 5.92 0.00 39.51 3.71
51 52 9.877178 ATACTAACTTCAAGTTCATCGAAATCT 57.123 29.630 5.92 0.00 39.51 2.40
52 53 8.608844 ACTAACTTCAAGTTCATCGAAATCTT 57.391 30.769 5.92 0.00 39.51 2.40
53 54 8.499162 ACTAACTTCAAGTTCATCGAAATCTTG 58.501 33.333 5.92 12.43 39.51 3.02
54 55 7.496529 AACTTCAAGTTCATCGAAATCTTGA 57.503 32.000 15.37 15.37 41.36 3.02
55 56 7.496529 ACTTCAAGTTCATCGAAATCTTGAA 57.503 32.000 22.74 22.74 46.03 2.69
56 57 7.930217 ACTTCAAGTTCATCGAAATCTTGAAA 58.070 30.769 23.52 14.87 46.78 2.69
57 58 8.405531 ACTTCAAGTTCATCGAAATCTTGAAAA 58.594 29.630 23.52 12.71 46.78 2.29
58 59 9.403110 CTTCAAGTTCATCGAAATCTTGAAAAT 57.597 29.630 23.52 8.07 46.78 1.82
59 60 8.955061 TCAAGTTCATCGAAATCTTGAAAATC 57.045 30.769 16.34 1.45 40.55 2.17
60 61 7.746034 TCAAGTTCATCGAAATCTTGAAAATCG 59.254 33.333 16.34 0.00 40.55 3.34
61 62 6.024049 AGTTCATCGAAATCTTGAAAATCGC 58.976 36.000 0.18 0.00 31.66 4.58
62 63 5.544136 TCATCGAAATCTTGAAAATCGCA 57.456 34.783 0.00 0.00 33.76 5.10
63 64 6.122850 TCATCGAAATCTTGAAAATCGCAT 57.877 33.333 0.00 0.00 33.76 4.73
64 65 5.967088 TCATCGAAATCTTGAAAATCGCATG 59.033 36.000 0.00 0.00 33.76 4.06
65 66 4.661125 TCGAAATCTTGAAAATCGCATGG 58.339 39.130 0.00 0.00 33.76 3.66
66 67 3.792956 CGAAATCTTGAAAATCGCATGGG 59.207 43.478 2.76 2.76 0.00 4.00
67 68 4.438608 CGAAATCTTGAAAATCGCATGGGA 60.439 41.667 15.52 15.52 0.00 4.37
68 69 4.376340 AATCTTGAAAATCGCATGGGAC 57.624 40.909 15.49 2.85 0.00 4.46
69 70 2.091541 TCTTGAAAATCGCATGGGACC 58.908 47.619 15.49 5.60 0.00 4.46
70 71 0.808125 TTGAAAATCGCATGGGACCG 59.192 50.000 15.49 0.00 0.00 4.79
71 72 0.322098 TGAAAATCGCATGGGACCGT 60.322 50.000 15.49 2.57 0.00 4.83
72 73 0.098728 GAAAATCGCATGGGACCGTG 59.901 55.000 15.49 6.19 36.13 4.94
73 74 1.312371 AAAATCGCATGGGACCGTGG 61.312 55.000 15.49 3.26 33.81 4.94
74 75 3.697439 AATCGCATGGGACCGTGGG 62.697 63.158 15.49 18.49 44.14 4.61
76 77 4.175337 CGCATGGGACCGTGGGAT 62.175 66.667 19.51 0.00 45.14 3.85
77 78 2.516930 GCATGGGACCGTGGGATG 60.517 66.667 12.21 0.00 33.81 3.51
78 79 2.516930 CATGGGACCGTGGGATGC 60.517 66.667 2.53 0.00 0.00 3.91
79 80 4.175337 ATGGGACCGTGGGATGCG 62.175 66.667 0.00 0.00 0.00 4.73
88 89 3.398310 TGGGATGCGGTGCTGCTA 61.398 61.111 0.00 0.00 35.36 3.49
89 90 2.124736 GGGATGCGGTGCTGCTAA 60.125 61.111 0.00 0.00 35.36 3.09
90 91 1.526917 GGGATGCGGTGCTGCTAAT 60.527 57.895 0.00 0.00 35.36 1.73
91 92 1.650912 GGATGCGGTGCTGCTAATG 59.349 57.895 0.00 0.00 35.36 1.90
92 93 1.650912 GATGCGGTGCTGCTAATGG 59.349 57.895 0.00 0.00 35.36 3.16
93 94 0.815213 GATGCGGTGCTGCTAATGGA 60.815 55.000 0.00 0.00 35.36 3.41
94 95 1.097547 ATGCGGTGCTGCTAATGGAC 61.098 55.000 0.00 0.00 35.36 4.02
95 96 1.450312 GCGGTGCTGCTAATGGACT 60.450 57.895 0.00 0.00 0.00 3.85
96 97 1.709147 GCGGTGCTGCTAATGGACTG 61.709 60.000 0.00 0.00 35.63 3.51
97 98 1.091771 CGGTGCTGCTAATGGACTGG 61.092 60.000 0.00 0.00 0.00 4.00
98 99 0.749454 GGTGCTGCTAATGGACTGGG 60.749 60.000 0.00 0.00 0.00 4.45
99 100 0.253044 GTGCTGCTAATGGACTGGGA 59.747 55.000 0.00 0.00 0.00 4.37
100 101 1.133976 GTGCTGCTAATGGACTGGGAT 60.134 52.381 0.00 0.00 0.00 3.85
101 102 2.104792 GTGCTGCTAATGGACTGGGATA 59.895 50.000 0.00 0.00 0.00 2.59
102 103 2.104792 TGCTGCTAATGGACTGGGATAC 59.895 50.000 0.00 0.00 0.00 2.24
120 121 2.889617 CGATCACCGGCCAGTACA 59.110 61.111 0.00 0.00 33.91 2.90
121 122 1.441729 CGATCACCGGCCAGTACAT 59.558 57.895 0.00 0.00 33.91 2.29
122 123 0.179084 CGATCACCGGCCAGTACATT 60.179 55.000 0.00 0.00 33.91 2.71
123 124 1.299541 GATCACCGGCCAGTACATTG 58.700 55.000 0.00 0.00 0.00 2.82
124 125 0.107214 ATCACCGGCCAGTACATTGG 60.107 55.000 0.00 0.00 41.35 3.16
125 126 1.002624 CACCGGCCAGTACATTGGT 60.003 57.895 0.00 0.00 40.49 3.67
126 127 0.250793 CACCGGCCAGTACATTGGTA 59.749 55.000 0.00 0.00 40.49 3.25
127 128 1.134220 CACCGGCCAGTACATTGGTAT 60.134 52.381 0.00 0.00 40.49 2.73
128 129 2.103432 CACCGGCCAGTACATTGGTATA 59.897 50.000 0.00 0.00 40.49 1.47
129 130 2.976882 ACCGGCCAGTACATTGGTATAT 59.023 45.455 0.00 0.00 40.49 0.86
130 131 3.393278 ACCGGCCAGTACATTGGTATATT 59.607 43.478 0.00 0.00 40.49 1.28
131 132 4.141344 ACCGGCCAGTACATTGGTATATTT 60.141 41.667 0.00 0.00 40.49 1.40
132 133 4.825085 CCGGCCAGTACATTGGTATATTTT 59.175 41.667 2.24 0.00 40.49 1.82
133 134 5.300792 CCGGCCAGTACATTGGTATATTTTT 59.699 40.000 2.24 0.00 40.49 1.94
134 135 6.205784 CGGCCAGTACATTGGTATATTTTTG 58.794 40.000 2.24 0.00 40.49 2.44
135 136 6.512297 GGCCAGTACATTGGTATATTTTTGG 58.488 40.000 0.00 0.00 40.49 3.28
136 137 6.097696 GGCCAGTACATTGGTATATTTTTGGT 59.902 38.462 0.00 0.00 40.49 3.67
137 138 7.364320 GGCCAGTACATTGGTATATTTTTGGTT 60.364 37.037 0.00 0.00 40.49 3.67
138 139 7.491048 GCCAGTACATTGGTATATTTTTGGTTG 59.509 37.037 3.32 0.00 40.49 3.77
139 140 8.527810 CCAGTACATTGGTATATTTTTGGTTGT 58.472 33.333 0.00 0.00 33.38 3.32
140 141 9.921637 CAGTACATTGGTATATTTTTGGTTGTT 57.078 29.630 0.00 0.00 0.00 2.83
141 142 9.921637 AGTACATTGGTATATTTTTGGTTGTTG 57.078 29.630 0.00 0.00 0.00 3.33
142 143 7.665561 ACATTGGTATATTTTTGGTTGTTGC 57.334 32.000 0.00 0.00 0.00 4.17
143 144 7.220030 ACATTGGTATATTTTTGGTTGTTGCA 58.780 30.769 0.00 0.00 0.00 4.08
144 145 7.716998 ACATTGGTATATTTTTGGTTGTTGCAA 59.283 29.630 0.00 0.00 0.00 4.08
145 146 8.562892 CATTGGTATATTTTTGGTTGTTGCAAA 58.437 29.630 0.00 0.00 0.00 3.68
146 147 8.506168 TTGGTATATTTTTGGTTGTTGCAAAA 57.494 26.923 0.00 0.00 0.00 2.44
147 148 8.506168 TGGTATATTTTTGGTTGTTGCAAAAA 57.494 26.923 0.00 0.00 40.54 1.94
148 149 9.125026 TGGTATATTTTTGGTTGTTGCAAAAAT 57.875 25.926 5.11 8.26 45.05 1.82
149 150 9.958234 GGTATATTTTTGGTTGTTGCAAAAATT 57.042 25.926 5.11 0.00 42.36 1.82
153 154 8.868635 ATTTTTGGTTGTTGCAAAAATTATGG 57.131 26.923 5.11 0.00 42.36 2.74
154 155 6.382869 TTTGGTTGTTGCAAAAATTATGGG 57.617 33.333 5.11 0.00 0.00 4.00
155 156 3.817647 TGGTTGTTGCAAAAATTATGGGC 59.182 39.130 5.11 0.00 0.00 5.36
156 157 3.817647 GGTTGTTGCAAAAATTATGGGCA 59.182 39.130 5.11 0.00 0.00 5.36
157 158 4.083377 GGTTGTTGCAAAAATTATGGGCAG 60.083 41.667 5.11 0.00 35.68 4.85
158 159 3.672808 TGTTGCAAAAATTATGGGCAGG 58.327 40.909 0.00 0.00 35.68 4.85
159 160 2.399916 TGCAAAAATTATGGGCAGGC 57.600 45.000 0.00 0.00 0.00 4.85
160 161 1.065564 TGCAAAAATTATGGGCAGGCC 60.066 47.619 5.91 5.91 0.00 5.19
161 162 1.065564 GCAAAAATTATGGGCAGGCCA 60.066 47.619 19.93 19.93 37.98 5.36
162 163 2.631267 CAAAAATTATGGGCAGGCCAC 58.369 47.619 20.07 5.08 37.98 5.01
163 164 1.949799 AAAATTATGGGCAGGCCACA 58.050 45.000 20.07 2.83 37.98 4.17
164 165 1.488390 AAATTATGGGCAGGCCACAG 58.512 50.000 20.07 0.00 37.98 3.66
165 166 1.044790 AATTATGGGCAGGCCACAGC 61.045 55.000 20.07 5.81 37.98 4.40
175 176 3.042560 GCCACAGCCTGGTTCAAC 58.957 61.111 0.00 0.00 42.99 3.18
176 177 2.564721 GCCACAGCCTGGTTCAACC 61.565 63.158 0.00 0.00 42.99 3.77
177 178 1.151450 CCACAGCCTGGTTCAACCT 59.849 57.895 8.40 0.00 39.58 3.50
178 179 0.890996 CCACAGCCTGGTTCAACCTC 60.891 60.000 8.40 0.00 39.58 3.85
179 180 0.109342 CACAGCCTGGTTCAACCTCT 59.891 55.000 8.40 0.00 39.58 3.69
180 181 1.347707 CACAGCCTGGTTCAACCTCTA 59.652 52.381 8.40 0.00 39.58 2.43
181 182 2.026822 CACAGCCTGGTTCAACCTCTAT 60.027 50.000 8.40 0.00 39.58 1.98
182 183 3.197766 CACAGCCTGGTTCAACCTCTATA 59.802 47.826 8.40 0.00 39.58 1.31
183 184 4.040755 ACAGCCTGGTTCAACCTCTATAT 58.959 43.478 8.40 0.00 39.58 0.86
184 185 5.070446 CACAGCCTGGTTCAACCTCTATATA 59.930 44.000 8.40 0.00 39.58 0.86
185 186 5.846714 ACAGCCTGGTTCAACCTCTATATAT 59.153 40.000 8.40 0.00 39.58 0.86
186 187 6.169094 CAGCCTGGTTCAACCTCTATATATG 58.831 44.000 8.40 0.00 39.58 1.78
187 188 4.938226 GCCTGGTTCAACCTCTATATATGC 59.062 45.833 8.40 0.00 39.58 3.14
188 189 5.513094 GCCTGGTTCAACCTCTATATATGCA 60.513 44.000 8.40 0.00 39.58 3.96
189 190 6.169094 CCTGGTTCAACCTCTATATATGCAG 58.831 44.000 8.40 0.00 39.58 4.41
190 191 6.239714 CCTGGTTCAACCTCTATATATGCAGT 60.240 42.308 8.40 0.00 39.58 4.40
191 192 7.039011 CCTGGTTCAACCTCTATATATGCAGTA 60.039 40.741 8.40 0.00 39.58 2.74
192 193 7.896811 TGGTTCAACCTCTATATATGCAGTAG 58.103 38.462 8.40 0.00 39.58 2.57
193 194 6.814146 GGTTCAACCTCTATATATGCAGTAGC 59.186 42.308 0.00 0.00 36.89 3.58
194 195 7.310113 GGTTCAACCTCTATATATGCAGTAGCT 60.310 40.741 0.00 0.00 37.14 3.32
195 196 7.163001 TCAACCTCTATATATGCAGTAGCTG 57.837 40.000 0.00 0.00 42.74 4.24
205 206 3.312404 CAGTAGCTGCACTTGTGGT 57.688 52.632 4.12 0.00 0.00 4.16
206 207 1.597742 CAGTAGCTGCACTTGTGGTT 58.402 50.000 4.12 0.00 0.00 3.67
207 208 1.265095 CAGTAGCTGCACTTGTGGTTG 59.735 52.381 4.12 0.00 0.00 3.77
208 209 0.040067 GTAGCTGCACTTGTGGTTGC 60.040 55.000 1.02 0.00 0.00 4.17
209 210 0.179020 TAGCTGCACTTGTGGTTGCT 60.179 50.000 1.02 0.00 33.37 3.91
210 211 0.179020 AGCTGCACTTGTGGTTGCTA 60.179 50.000 1.02 0.00 0.00 3.49
211 212 0.040067 GCTGCACTTGTGGTTGCTAC 60.040 55.000 2.81 0.00 0.00 3.58
212 213 1.597742 CTGCACTTGTGGTTGCTACT 58.402 50.000 2.81 0.00 0.00 2.57
213 214 1.532868 CTGCACTTGTGGTTGCTACTC 59.467 52.381 2.81 0.00 0.00 2.59
214 215 0.875059 GCACTTGTGGTTGCTACTCC 59.125 55.000 2.81 0.00 0.00 3.85
215 216 1.813862 GCACTTGTGGTTGCTACTCCA 60.814 52.381 2.81 0.00 0.00 3.86
216 217 2.783135 CACTTGTGGTTGCTACTCCAT 58.217 47.619 0.00 0.00 36.09 3.41
217 218 3.149196 CACTTGTGGTTGCTACTCCATT 58.851 45.455 0.00 0.00 36.09 3.16
218 219 3.058016 CACTTGTGGTTGCTACTCCATTG 60.058 47.826 0.00 0.00 36.09 2.82
219 220 3.181445 ACTTGTGGTTGCTACTCCATTGA 60.181 43.478 0.00 0.00 36.09 2.57
220 221 3.719268 TGTGGTTGCTACTCCATTGAT 57.281 42.857 0.00 0.00 36.09 2.57
221 222 4.032960 TGTGGTTGCTACTCCATTGATT 57.967 40.909 0.00 0.00 36.09 2.57
222 223 4.406456 TGTGGTTGCTACTCCATTGATTT 58.594 39.130 0.00 0.00 36.09 2.17
223 224 4.218200 TGTGGTTGCTACTCCATTGATTTG 59.782 41.667 0.00 0.00 36.09 2.32
224 225 4.458989 GTGGTTGCTACTCCATTGATTTGA 59.541 41.667 0.00 0.00 36.09 2.69
225 226 5.048083 GTGGTTGCTACTCCATTGATTTGAA 60.048 40.000 0.00 0.00 36.09 2.69
226 227 5.538053 TGGTTGCTACTCCATTGATTTGAAA 59.462 36.000 0.00 0.00 0.00 2.69
227 228 6.095377 GGTTGCTACTCCATTGATTTGAAAG 58.905 40.000 0.00 0.00 0.00 2.62
228 229 5.902613 TGCTACTCCATTGATTTGAAAGG 57.097 39.130 0.00 0.00 0.00 3.11
229 230 5.324409 TGCTACTCCATTGATTTGAAAGGT 58.676 37.500 0.00 0.00 0.00 3.50
230 231 6.480763 TGCTACTCCATTGATTTGAAAGGTA 58.519 36.000 0.00 0.00 0.00 3.08
231 232 6.945435 TGCTACTCCATTGATTTGAAAGGTAA 59.055 34.615 0.00 0.00 0.00 2.85
232 233 7.615365 TGCTACTCCATTGATTTGAAAGGTAAT 59.385 33.333 0.00 0.00 0.00 1.89
233 234 7.917505 GCTACTCCATTGATTTGAAAGGTAATG 59.082 37.037 0.00 0.00 0.00 1.90
234 235 6.633856 ACTCCATTGATTTGAAAGGTAATGC 58.366 36.000 6.23 0.00 0.00 3.56
235 236 6.211184 ACTCCATTGATTTGAAAGGTAATGCA 59.789 34.615 0.00 0.00 0.00 3.96
236 237 7.093201 ACTCCATTGATTTGAAAGGTAATGCAT 60.093 33.333 0.00 0.00 0.00 3.96
237 238 7.622713 TCCATTGATTTGAAAGGTAATGCATT 58.377 30.769 17.56 17.56 0.00 3.56
238 239 8.102047 TCCATTGATTTGAAAGGTAATGCATTT 58.898 29.630 18.75 0.00 33.38 2.32
239 240 8.178964 CCATTGATTTGAAAGGTAATGCATTTG 58.821 33.333 18.75 3.52 30.56 2.32
240 241 7.670009 TTGATTTGAAAGGTAATGCATTTGG 57.330 32.000 18.75 0.00 30.56 3.28
241 242 6.171921 TGATTTGAAAGGTAATGCATTTGGG 58.828 36.000 18.75 0.00 30.56 4.12
242 243 5.815233 TTTGAAAGGTAATGCATTTGGGA 57.185 34.783 18.75 0.00 30.56 4.37
243 244 5.404466 TTGAAAGGTAATGCATTTGGGAG 57.596 39.130 18.75 0.00 30.56 4.30
244 245 3.195396 TGAAAGGTAATGCATTTGGGAGC 59.805 43.478 18.75 9.12 30.56 4.70
245 246 2.834638 AGGTAATGCATTTGGGAGCT 57.165 45.000 18.75 11.41 0.00 4.09
246 247 2.381911 AGGTAATGCATTTGGGAGCTG 58.618 47.619 18.75 0.00 0.00 4.24
247 248 2.102578 GGTAATGCATTTGGGAGCTGT 58.897 47.619 18.75 0.00 0.00 4.40
248 249 2.497273 GGTAATGCATTTGGGAGCTGTT 59.503 45.455 18.75 0.00 0.00 3.16
249 250 3.699038 GGTAATGCATTTGGGAGCTGTTA 59.301 43.478 18.75 0.00 0.00 2.41
250 251 3.874392 AATGCATTTGGGAGCTGTTAC 57.126 42.857 5.99 0.00 0.00 2.50
251 252 1.164411 TGCATTTGGGAGCTGTTACG 58.836 50.000 0.00 0.00 0.00 3.18
252 253 1.165270 GCATTTGGGAGCTGTTACGT 58.835 50.000 0.00 0.00 0.00 3.57
253 254 1.539827 GCATTTGGGAGCTGTTACGTT 59.460 47.619 0.00 0.00 0.00 3.99
254 255 2.414161 GCATTTGGGAGCTGTTACGTTC 60.414 50.000 0.00 0.00 0.00 3.95
255 256 2.623878 TTTGGGAGCTGTTACGTTCA 57.376 45.000 0.00 0.00 0.00 3.18
256 257 1.873698 TTGGGAGCTGTTACGTTCAC 58.126 50.000 0.00 0.00 0.00 3.18
257 258 0.319211 TGGGAGCTGTTACGTTCACG 60.319 55.000 0.00 0.00 46.33 4.35
258 259 0.038892 GGGAGCTGTTACGTTCACGA 60.039 55.000 6.30 0.00 43.02 4.35
259 260 1.603678 GGGAGCTGTTACGTTCACGAA 60.604 52.381 6.30 0.00 43.02 3.85
260 261 1.454653 GGAGCTGTTACGTTCACGAAC 59.545 52.381 6.30 6.97 43.02 3.95
261 262 1.454653 GAGCTGTTACGTTCACGAACC 59.545 52.381 6.30 0.00 43.02 3.62
262 263 1.202440 AGCTGTTACGTTCACGAACCA 60.202 47.619 6.30 0.00 43.02 3.67
263 264 1.593933 GCTGTTACGTTCACGAACCAA 59.406 47.619 6.30 0.00 43.02 3.67
264 265 2.030701 GCTGTTACGTTCACGAACCAAA 59.969 45.455 6.30 0.00 43.02 3.28
265 266 3.485546 GCTGTTACGTTCACGAACCAAAA 60.486 43.478 6.30 0.00 43.02 2.44
266 267 4.649977 CTGTTACGTTCACGAACCAAAAA 58.350 39.130 6.30 0.00 43.02 1.94
267 268 5.232610 TGTTACGTTCACGAACCAAAAAT 57.767 34.783 6.30 0.00 43.02 1.82
268 269 6.355397 TGTTACGTTCACGAACCAAAAATA 57.645 33.333 6.30 0.00 43.02 1.40
269 270 6.957150 TGTTACGTTCACGAACCAAAAATAT 58.043 32.000 6.30 0.00 43.02 1.28
270 271 8.081208 TGTTACGTTCACGAACCAAAAATATA 57.919 30.769 6.30 0.00 43.02 0.86
271 272 8.008844 TGTTACGTTCACGAACCAAAAATATAC 58.991 33.333 6.30 0.00 43.02 1.47
272 273 6.542574 ACGTTCACGAACCAAAAATATACA 57.457 33.333 6.30 0.00 43.02 2.29
273 274 6.595794 ACGTTCACGAACCAAAAATATACAG 58.404 36.000 6.30 0.00 43.02 2.74
274 275 5.506832 CGTTCACGAACCAAAAATATACAGC 59.493 40.000 4.40 0.00 43.02 4.40
275 276 6.608610 GTTCACGAACCAAAAATATACAGCT 58.391 36.000 0.00 0.00 35.36 4.24
276 277 6.811253 TCACGAACCAAAAATATACAGCTT 57.189 33.333 0.00 0.00 0.00 3.74
277 278 7.209471 TCACGAACCAAAAATATACAGCTTT 57.791 32.000 0.00 0.00 0.00 3.51
278 279 7.653647 TCACGAACCAAAAATATACAGCTTTT 58.346 30.769 0.00 0.00 0.00 2.27
279 280 7.593273 TCACGAACCAAAAATATACAGCTTTTG 59.407 33.333 0.00 3.54 38.95 2.44
291 292 1.508088 GCTTTTGCTCATCCGGTGG 59.492 57.895 0.00 0.00 43.35 4.61
292 293 1.244019 GCTTTTGCTCATCCGGTGGT 61.244 55.000 0.00 0.00 43.35 4.16
293 294 1.247567 CTTTTGCTCATCCGGTGGTT 58.752 50.000 0.00 0.00 0.00 3.67
294 295 1.200020 CTTTTGCTCATCCGGTGGTTC 59.800 52.381 0.00 0.00 0.00 3.62
295 296 0.608035 TTTGCTCATCCGGTGGTTCC 60.608 55.000 0.00 0.00 0.00 3.62
296 297 1.488705 TTGCTCATCCGGTGGTTCCT 61.489 55.000 0.00 0.00 0.00 3.36
297 298 0.616395 TGCTCATCCGGTGGTTCCTA 60.616 55.000 0.00 0.00 0.00 2.94
298 299 0.759346 GCTCATCCGGTGGTTCCTAT 59.241 55.000 0.00 0.00 0.00 2.57
299 300 1.141053 GCTCATCCGGTGGTTCCTATT 59.859 52.381 0.00 0.00 0.00 1.73
300 301 2.367567 GCTCATCCGGTGGTTCCTATTA 59.632 50.000 0.00 0.00 0.00 0.98
301 302 3.555168 GCTCATCCGGTGGTTCCTATTAG 60.555 52.174 0.00 0.00 0.00 1.73
302 303 3.895656 CTCATCCGGTGGTTCCTATTAGA 59.104 47.826 0.00 0.00 0.00 2.10
303 304 3.895656 TCATCCGGTGGTTCCTATTAGAG 59.104 47.826 0.00 0.00 0.00 2.43
304 305 2.037144 TCCGGTGGTTCCTATTAGAGC 58.963 52.381 0.00 0.00 0.00 4.09
305 306 1.070289 CCGGTGGTTCCTATTAGAGCC 59.930 57.143 0.00 0.00 37.63 4.70
306 307 1.269621 CGGTGGTTCCTATTAGAGCCG 60.270 57.143 0.00 0.00 39.85 5.52
307 308 1.761198 GGTGGTTCCTATTAGAGCCGT 59.239 52.381 0.00 0.00 39.85 5.68
308 309 2.483188 GGTGGTTCCTATTAGAGCCGTG 60.483 54.545 0.00 0.00 39.85 4.94
309 310 1.138266 TGGTTCCTATTAGAGCCGTGC 59.862 52.381 0.00 0.00 39.85 5.34
310 311 1.488527 GTTCCTATTAGAGCCGTGCG 58.511 55.000 0.00 0.00 0.00 5.34
311 312 1.108776 TTCCTATTAGAGCCGTGCGT 58.891 50.000 0.00 0.00 0.00 5.24
312 313 0.384309 TCCTATTAGAGCCGTGCGTG 59.616 55.000 0.00 0.00 0.00 5.34
313 314 0.102481 CCTATTAGAGCCGTGCGTGT 59.898 55.000 0.00 0.00 0.00 4.49
314 315 1.335810 CCTATTAGAGCCGTGCGTGTA 59.664 52.381 0.00 0.00 0.00 2.90
315 316 2.604855 CCTATTAGAGCCGTGCGTGTAG 60.605 54.545 0.00 0.00 0.00 2.74
316 317 1.100510 ATTAGAGCCGTGCGTGTAGA 58.899 50.000 0.00 0.00 0.00 2.59
317 318 1.100510 TTAGAGCCGTGCGTGTAGAT 58.899 50.000 0.00 0.00 0.00 1.98
318 319 0.661552 TAGAGCCGTGCGTGTAGATC 59.338 55.000 0.00 0.00 0.00 2.75
319 320 1.589196 GAGCCGTGCGTGTAGATCC 60.589 63.158 0.00 0.00 0.00 3.36
320 321 2.183300 GCCGTGCGTGTAGATCCA 59.817 61.111 0.00 0.00 0.00 3.41
321 322 1.878522 GCCGTGCGTGTAGATCCAG 60.879 63.158 0.00 0.00 0.00 3.86
350 351 2.383855 CTCGATCTGTTTCTCCCCTCT 58.616 52.381 0.00 0.00 0.00 3.69
574 589 5.391312 AACAGATCATGCTTTACCAAACC 57.609 39.130 0.00 0.00 0.00 3.27
617 640 8.585018 CAATTAGTAGGTCCAGTTTTTCCAAAT 58.415 33.333 0.00 0.00 0.00 2.32
653 677 8.417106 TCATGCTTTTCCAAACAAATTAGTACA 58.583 29.630 0.00 0.00 0.00 2.90
664 691 5.003804 ACAAATTAGTACAGGGAGCTGTTG 58.996 41.667 0.00 0.00 38.64 3.33
678 705 3.163630 GCTGTTGCTTTCAAGAACCAA 57.836 42.857 0.00 0.00 36.03 3.67
694 721 5.359756 AGAACCAAAAATGTCCAGCTTTTC 58.640 37.500 0.00 0.00 0.00 2.29
806 842 4.323485 CCAGTAGTTCATCTTGGGTTGCTA 60.323 45.833 0.00 0.00 0.00 3.49
867 922 5.396884 GCTATTCAAGGTACCCATCTTCTGT 60.397 44.000 8.74 0.00 0.00 3.41
896 957 5.233689 GCTTTGGAAAGAAGCAATGCATATC 59.766 40.000 8.35 2.66 46.67 1.63
958 1019 4.741676 CAGGTTTTGCTCATTCTGTGTTTC 59.258 41.667 0.00 0.00 0.00 2.78
981 1042 6.629128 TCGAAAACCATCATGTTTGCATTAT 58.371 32.000 0.00 0.00 38.41 1.28
1035 1184 4.751431 GCATTGAGCCCTGTCCTT 57.249 55.556 0.00 0.00 37.23 3.36
1278 1427 0.471780 TGGGTGAGAGTTCAGGCAGA 60.472 55.000 0.00 0.00 32.98 4.26
1339 1488 6.209391 CCTCAAGAAGACCACCACATTATTTT 59.791 38.462 0.00 0.00 0.00 1.82
1344 1493 8.472007 AGAAGACCACCACATTATTTTGTAAA 57.528 30.769 0.00 0.00 0.00 2.01
1479 1628 1.479323 GCTACCATTGACCCTCGTGTA 59.521 52.381 0.00 0.00 0.00 2.90
1497 1646 7.009357 CCTCGTGTATTAGCTCTACAAAAAGAC 59.991 40.741 9.88 0.00 31.27 3.01
1559 1708 9.243637 TGAACTTATTAAAACACTGATTTGTGC 57.756 29.630 0.00 0.00 41.30 4.57
1564 1713 1.674359 AACACTGATTTGTGCGGACA 58.326 45.000 5.33 5.33 41.30 4.02
1652 1801 3.476552 TCACCAAAGCAGTTTTCGAGAT 58.523 40.909 0.00 0.00 0.00 2.75
1669 1818 4.336433 TCGAGATGATCAAAGCCCAATTTC 59.664 41.667 0.00 0.00 0.00 2.17
1741 1890 6.374417 TTTTCAAAGACCTACTCTATGGCT 57.626 37.500 0.00 0.00 0.00 4.75
1960 2288 4.781775 TTTGTAGTGGTCCTTTTCTCCA 57.218 40.909 0.00 0.00 0.00 3.86
2104 2469 7.276218 TGCTTAGTACGTTACCATTATGTTGTC 59.724 37.037 0.00 0.00 0.00 3.18
2182 2552 4.510340 GCATAGGTACCTCGTTGTAATTGG 59.490 45.833 20.32 0.00 0.00 3.16
2307 2677 5.714333 TCTGAAGCATGTCTCTCTTCTAGTT 59.286 40.000 10.22 0.00 37.63 2.24
2321 2691 9.681692 CTCTCTTCTAGTTATGACATGATTCAG 57.318 37.037 0.00 0.00 0.00 3.02
2352 2722 6.371595 AACCTCTTTCTGATGAAGACTCAT 57.628 37.500 0.00 0.00 45.34 2.90
2400 2770 4.410099 TCAAAGCAAGGAGAAATGTCCAT 58.590 39.130 0.00 0.00 39.34 3.41
2446 2816 7.855375 AGAGAGATATTGAAGAAATGTGGTGA 58.145 34.615 0.00 0.00 0.00 4.02
2520 2890 8.782339 AAAGATAAAGCAAAAAGATGAATGGG 57.218 30.769 0.00 0.00 0.00 4.00
2530 2900 2.097036 AGATGAATGGGTGCATGTGTG 58.903 47.619 0.00 0.00 0.00 3.82
2568 2938 5.067954 GTGGAGTTACACAAGGTGGTATTT 58.932 41.667 1.07 0.00 40.99 1.40
2681 3051 6.686630 TGAAGACTTTGAGATTGAGAGAGAC 58.313 40.000 0.00 0.00 0.00 3.36
2785 3155 7.052873 AGCTACTTCAATGAGCTTATGAACAT 58.947 34.615 5.87 0.00 44.08 2.71
2827 3197 3.592898 AATCAATTTGGAAGGAACGGC 57.407 42.857 0.00 0.00 0.00 5.68
2978 3349 7.604164 AGGTTATCACTTCATAATATCAAGGCG 59.396 37.037 0.00 0.00 0.00 5.52
3034 3407 4.134563 GTCAAAAGTGAGGACCTTTGCTA 58.865 43.478 0.00 0.00 33.27 3.49
3076 3449 3.743584 CGATTGGTTGCCATCTCTCTCAT 60.744 47.826 0.00 0.00 31.53 2.90
3082 3455 1.835531 TGCCATCTCTCTCATGCTTCA 59.164 47.619 0.00 0.00 0.00 3.02
3103 3476 6.561737 TCAAATTTTTACGTGTGCTGGATA 57.438 33.333 0.00 0.00 0.00 2.59
3260 3633 7.201732 GCAGCTTTTACACACACTGGATATAAT 60.202 37.037 0.00 0.00 0.00 1.28
3332 3711 9.754382 AAATTTGATATGCCTATGTGTCAATTC 57.246 29.630 0.00 0.00 0.00 2.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.850752 AGGGTAAATCATTTTCGGTCAAAT 57.149 33.333 0.00 0.00 0.00 2.32
1 2 7.762588 TTAGGGTAAATCATTTTCGGTCAAA 57.237 32.000 0.00 0.00 0.00 2.69
2 3 7.948034 ATTAGGGTAAATCATTTTCGGTCAA 57.052 32.000 0.00 0.00 0.00 3.18
3 4 8.269317 AGTATTAGGGTAAATCATTTTCGGTCA 58.731 33.333 0.00 0.00 0.00 4.02
4 5 8.672823 AGTATTAGGGTAAATCATTTTCGGTC 57.327 34.615 0.00 0.00 0.00 4.79
19 20 7.980099 CGATGAACTTGAAGTTAGTATTAGGGT 59.020 37.037 11.01 0.00 38.80 4.34
20 21 8.195436 TCGATGAACTTGAAGTTAGTATTAGGG 58.805 37.037 11.01 0.00 38.80 3.53
21 22 9.582431 TTCGATGAACTTGAAGTTAGTATTAGG 57.418 33.333 11.01 1.68 38.80 2.69
25 26 9.877178 AGATTTCGATGAACTTGAAGTTAGTAT 57.123 29.630 11.01 6.15 38.80 2.12
26 27 9.706691 AAGATTTCGATGAACTTGAAGTTAGTA 57.293 29.630 11.01 1.27 38.80 1.82
27 28 8.499162 CAAGATTTCGATGAACTTGAAGTTAGT 58.501 33.333 11.01 2.46 38.80 2.24
28 29 8.712363 TCAAGATTTCGATGAACTTGAAGTTAG 58.288 33.333 11.01 3.60 42.12 2.34
29 30 8.601845 TCAAGATTTCGATGAACTTGAAGTTA 57.398 30.769 11.01 0.48 42.12 2.24
30 31 7.496529 TCAAGATTTCGATGAACTTGAAGTT 57.503 32.000 10.82 10.82 42.12 2.66
31 32 7.496529 TTCAAGATTTCGATGAACTTGAAGT 57.503 32.000 20.70 0.00 45.84 3.01
34 35 7.746034 CGATTTTCAAGATTTCGATGAACTTGA 59.254 33.333 14.08 14.08 42.93 3.02
35 36 7.460637 GCGATTTTCAAGATTTCGATGAACTTG 60.461 37.037 10.94 10.94 39.13 3.16
36 37 6.524586 GCGATTTTCAAGATTTCGATGAACTT 59.475 34.615 0.00 0.00 33.13 2.66
37 38 6.024049 GCGATTTTCAAGATTTCGATGAACT 58.976 36.000 0.00 0.00 33.13 3.01
38 39 5.794945 TGCGATTTTCAAGATTTCGATGAAC 59.205 36.000 0.00 0.00 33.13 3.18
39 40 5.937187 TGCGATTTTCAAGATTTCGATGAA 58.063 33.333 0.00 0.00 31.74 2.57
40 41 5.544136 TGCGATTTTCAAGATTTCGATGA 57.456 34.783 0.00 0.00 31.74 2.92
41 42 5.172591 CCATGCGATTTTCAAGATTTCGATG 59.827 40.000 0.00 0.00 31.74 3.84
42 43 5.276270 CCATGCGATTTTCAAGATTTCGAT 58.724 37.500 0.00 0.00 31.74 3.59
43 44 4.438608 CCCATGCGATTTTCAAGATTTCGA 60.439 41.667 0.00 0.00 31.74 3.71
44 45 3.792956 CCCATGCGATTTTCAAGATTTCG 59.207 43.478 0.00 0.00 0.00 3.46
45 46 4.800471 GTCCCATGCGATTTTCAAGATTTC 59.200 41.667 0.00 0.00 0.00 2.17
46 47 4.381932 GGTCCCATGCGATTTTCAAGATTT 60.382 41.667 0.00 0.00 0.00 2.17
47 48 3.131046 GGTCCCATGCGATTTTCAAGATT 59.869 43.478 0.00 0.00 0.00 2.40
48 49 2.689983 GGTCCCATGCGATTTTCAAGAT 59.310 45.455 0.00 0.00 0.00 2.40
49 50 2.091541 GGTCCCATGCGATTTTCAAGA 58.908 47.619 0.00 0.00 0.00 3.02
50 51 1.202177 CGGTCCCATGCGATTTTCAAG 60.202 52.381 0.00 0.00 0.00 3.02
51 52 0.808125 CGGTCCCATGCGATTTTCAA 59.192 50.000 0.00 0.00 0.00 2.69
52 53 0.322098 ACGGTCCCATGCGATTTTCA 60.322 50.000 0.00 0.00 0.00 2.69
53 54 0.098728 CACGGTCCCATGCGATTTTC 59.901 55.000 0.00 0.00 0.00 2.29
54 55 1.312371 CCACGGTCCCATGCGATTTT 61.312 55.000 0.00 0.00 0.00 1.82
55 56 1.748879 CCACGGTCCCATGCGATTT 60.749 57.895 0.00 0.00 0.00 2.17
56 57 2.124736 CCACGGTCCCATGCGATT 60.125 61.111 0.00 0.00 0.00 3.34
57 58 4.175337 CCCACGGTCCCATGCGAT 62.175 66.667 0.00 0.00 0.00 4.58
59 60 4.175337 ATCCCACGGTCCCATGCG 62.175 66.667 0.00 0.00 0.00 4.73
60 61 2.516930 CATCCCACGGTCCCATGC 60.517 66.667 0.00 0.00 0.00 4.06
61 62 2.516930 GCATCCCACGGTCCCATG 60.517 66.667 0.00 0.00 0.00 3.66
62 63 4.175337 CGCATCCCACGGTCCCAT 62.175 66.667 0.00 0.00 0.00 4.00
70 71 3.680620 TAGCAGCACCGCATCCCAC 62.681 63.158 0.00 0.00 0.00 4.61
71 72 2.269520 ATTAGCAGCACCGCATCCCA 62.270 55.000 0.00 0.00 0.00 4.37
72 73 1.526917 ATTAGCAGCACCGCATCCC 60.527 57.895 0.00 0.00 0.00 3.85
73 74 1.650912 CATTAGCAGCACCGCATCC 59.349 57.895 0.00 0.00 0.00 3.51
74 75 0.815213 TCCATTAGCAGCACCGCATC 60.815 55.000 0.00 0.00 0.00 3.91
75 76 1.097547 GTCCATTAGCAGCACCGCAT 61.098 55.000 0.00 0.00 0.00 4.73
76 77 1.745115 GTCCATTAGCAGCACCGCA 60.745 57.895 0.00 0.00 0.00 5.69
77 78 1.450312 AGTCCATTAGCAGCACCGC 60.450 57.895 0.00 0.00 0.00 5.68
78 79 1.091771 CCAGTCCATTAGCAGCACCG 61.092 60.000 0.00 0.00 0.00 4.94
79 80 0.749454 CCCAGTCCATTAGCAGCACC 60.749 60.000 0.00 0.00 0.00 5.01
80 81 0.253044 TCCCAGTCCATTAGCAGCAC 59.747 55.000 0.00 0.00 0.00 4.40
81 82 1.216064 ATCCCAGTCCATTAGCAGCA 58.784 50.000 0.00 0.00 0.00 4.41
82 83 2.551071 GGTATCCCAGTCCATTAGCAGC 60.551 54.545 0.00 0.00 0.00 5.25
83 84 2.289072 CGGTATCCCAGTCCATTAGCAG 60.289 54.545 0.00 0.00 0.00 4.24
84 85 1.691976 CGGTATCCCAGTCCATTAGCA 59.308 52.381 0.00 0.00 0.00 3.49
85 86 1.968493 TCGGTATCCCAGTCCATTAGC 59.032 52.381 0.00 0.00 0.00 3.09
86 87 3.832490 TGATCGGTATCCCAGTCCATTAG 59.168 47.826 0.00 0.00 0.00 1.73
87 88 3.576982 GTGATCGGTATCCCAGTCCATTA 59.423 47.826 0.00 0.00 0.00 1.90
88 89 2.368875 GTGATCGGTATCCCAGTCCATT 59.631 50.000 0.00 0.00 0.00 3.16
89 90 1.971357 GTGATCGGTATCCCAGTCCAT 59.029 52.381 0.00 0.00 0.00 3.41
90 91 1.410004 GTGATCGGTATCCCAGTCCA 58.590 55.000 0.00 0.00 0.00 4.02
91 92 0.680061 GGTGATCGGTATCCCAGTCC 59.320 60.000 0.00 0.00 0.00 3.85
92 93 0.314302 CGGTGATCGGTATCCCAGTC 59.686 60.000 0.00 0.00 34.75 3.51
93 94 2.426651 CGGTGATCGGTATCCCAGT 58.573 57.895 0.00 0.00 34.75 4.00
103 104 0.179084 AATGTACTGGCCGGTGATCG 60.179 55.000 28.18 0.00 38.88 3.69
104 105 1.299541 CAATGTACTGGCCGGTGATC 58.700 55.000 28.18 16.91 0.00 2.92
105 106 0.107214 CCAATGTACTGGCCGGTGAT 60.107 55.000 28.18 15.77 0.00 3.06
106 107 1.298340 CCAATGTACTGGCCGGTGA 59.702 57.895 28.18 14.05 0.00 4.02
107 108 0.250793 TACCAATGTACTGGCCGGTG 59.749 55.000 28.18 11.75 40.45 4.94
108 109 1.209621 ATACCAATGTACTGGCCGGT 58.790 50.000 23.52 23.52 40.45 5.28
109 110 3.695830 ATATACCAATGTACTGGCCGG 57.304 47.619 11.02 11.02 40.45 6.13
110 111 6.205784 CAAAAATATACCAATGTACTGGCCG 58.794 40.000 0.00 0.00 40.45 6.13
111 112 6.097696 ACCAAAAATATACCAATGTACTGGCC 59.902 38.462 0.00 0.00 40.45 5.36
112 113 7.107639 ACCAAAAATATACCAATGTACTGGC 57.892 36.000 1.12 0.00 40.45 4.85
113 114 8.527810 ACAACCAAAAATATACCAATGTACTGG 58.472 33.333 0.00 0.00 42.68 4.00
114 115 9.921637 AACAACCAAAAATATACCAATGTACTG 57.078 29.630 0.00 0.00 0.00 2.74
115 116 9.921637 CAACAACCAAAAATATACCAATGTACT 57.078 29.630 0.00 0.00 0.00 2.73
116 117 8.652463 GCAACAACCAAAAATATACCAATGTAC 58.348 33.333 0.00 0.00 0.00 2.90
117 118 8.367911 TGCAACAACCAAAAATATACCAATGTA 58.632 29.630 0.00 0.00 0.00 2.29
118 119 7.220030 TGCAACAACCAAAAATATACCAATGT 58.780 30.769 0.00 0.00 0.00 2.71
119 120 7.664082 TGCAACAACCAAAAATATACCAATG 57.336 32.000 0.00 0.00 0.00 2.82
120 121 8.682936 TTTGCAACAACCAAAAATATACCAAT 57.317 26.923 0.00 0.00 29.93 3.16
121 122 8.506168 TTTTGCAACAACCAAAAATATACCAA 57.494 26.923 0.00 0.00 38.72 3.67
122 123 8.506168 TTTTTGCAACAACCAAAAATATACCA 57.494 26.923 0.00 0.00 43.35 3.25
130 131 6.681368 GCCCATAATTTTTGCAACAACCAAAA 60.681 34.615 0.00 0.00 39.59 2.44
131 132 5.221126 GCCCATAATTTTTGCAACAACCAAA 60.221 36.000 0.00 0.00 0.00 3.28
132 133 4.276926 GCCCATAATTTTTGCAACAACCAA 59.723 37.500 0.00 0.00 0.00 3.67
133 134 3.817647 GCCCATAATTTTTGCAACAACCA 59.182 39.130 0.00 0.00 0.00 3.67
134 135 3.817647 TGCCCATAATTTTTGCAACAACC 59.182 39.130 0.00 0.00 0.00 3.77
135 136 4.083377 CCTGCCCATAATTTTTGCAACAAC 60.083 41.667 0.00 0.00 0.00 3.32
136 137 4.070716 CCTGCCCATAATTTTTGCAACAA 58.929 39.130 0.00 0.00 0.00 2.83
137 138 3.672808 CCTGCCCATAATTTTTGCAACA 58.327 40.909 0.00 0.00 0.00 3.33
138 139 2.419673 GCCTGCCCATAATTTTTGCAAC 59.580 45.455 0.00 0.00 0.00 4.17
139 140 2.617532 GGCCTGCCCATAATTTTTGCAA 60.618 45.455 0.00 0.00 0.00 4.08
140 141 1.065564 GGCCTGCCCATAATTTTTGCA 60.066 47.619 0.00 0.00 0.00 4.08
141 142 1.065564 TGGCCTGCCCATAATTTTTGC 60.066 47.619 3.32 0.00 39.18 3.68
160 161 0.109342 AGAGGTTGAACCAGGCTGTG 59.891 55.000 17.83 7.58 41.95 3.66
161 162 1.729586 TAGAGGTTGAACCAGGCTGT 58.270 50.000 17.83 0.00 41.95 4.40
162 163 4.696479 ATATAGAGGTTGAACCAGGCTG 57.304 45.455 17.83 7.75 41.95 4.85
163 164 5.280215 GCATATATAGAGGTTGAACCAGGCT 60.280 44.000 17.83 12.63 41.95 4.58
164 165 4.938226 GCATATATAGAGGTTGAACCAGGC 59.062 45.833 17.83 3.23 41.95 4.85
165 166 6.114187 TGCATATATAGAGGTTGAACCAGG 57.886 41.667 17.83 0.00 41.95 4.45
166 167 6.763355 ACTGCATATATAGAGGTTGAACCAG 58.237 40.000 17.83 2.84 41.95 4.00
167 168 6.747414 ACTGCATATATAGAGGTTGAACCA 57.253 37.500 17.83 0.00 41.95 3.67
168 169 6.814146 GCTACTGCATATATAGAGGTTGAACC 59.186 42.308 6.16 6.16 37.60 3.62
169 170 7.543868 CAGCTACTGCATATATAGAGGTTGAAC 59.456 40.741 0.00 0.00 42.74 3.18
170 171 7.606349 CAGCTACTGCATATATAGAGGTTGAA 58.394 38.462 0.00 0.00 42.74 2.69
171 172 7.163001 CAGCTACTGCATATATAGAGGTTGA 57.837 40.000 0.00 0.00 42.74 3.18
187 188 1.265095 CAACCACAAGTGCAGCTACTG 59.735 52.381 0.00 0.00 34.12 2.74
188 189 1.597742 CAACCACAAGTGCAGCTACT 58.402 50.000 0.00 0.00 0.00 2.57
189 190 0.040067 GCAACCACAAGTGCAGCTAC 60.040 55.000 0.00 0.00 0.00 3.58
190 191 0.179020 AGCAACCACAAGTGCAGCTA 60.179 50.000 9.45 0.00 31.88 3.32
191 192 0.179020 TAGCAACCACAAGTGCAGCT 60.179 50.000 13.76 13.76 35.63 4.24
192 193 0.040067 GTAGCAACCACAAGTGCAGC 60.040 55.000 0.00 0.00 0.00 5.25
193 194 1.532868 GAGTAGCAACCACAAGTGCAG 59.467 52.381 0.00 0.00 0.00 4.41
194 195 1.593196 GAGTAGCAACCACAAGTGCA 58.407 50.000 0.00 0.00 0.00 4.57
195 196 0.875059 GGAGTAGCAACCACAAGTGC 59.125 55.000 0.00 0.00 0.00 4.40
196 197 2.254546 TGGAGTAGCAACCACAAGTG 57.745 50.000 0.00 0.00 0.00 3.16
197 198 3.149196 CAATGGAGTAGCAACCACAAGT 58.851 45.455 0.00 0.00 39.06 3.16
198 199 3.411446 TCAATGGAGTAGCAACCACAAG 58.589 45.455 0.00 0.00 39.06 3.16
199 200 3.500448 TCAATGGAGTAGCAACCACAA 57.500 42.857 0.00 0.00 39.06 3.33
200 201 3.719268 ATCAATGGAGTAGCAACCACA 57.281 42.857 0.00 0.00 39.06 4.17
201 202 4.458989 TCAAATCAATGGAGTAGCAACCAC 59.541 41.667 0.00 0.00 39.06 4.16
202 203 4.661222 TCAAATCAATGGAGTAGCAACCA 58.339 39.130 0.00 0.00 40.57 3.67
203 204 5.643379 TTCAAATCAATGGAGTAGCAACC 57.357 39.130 0.00 0.00 0.00 3.77
204 205 6.095377 CCTTTCAAATCAATGGAGTAGCAAC 58.905 40.000 0.00 0.00 0.00 4.17
205 206 5.774690 ACCTTTCAAATCAATGGAGTAGCAA 59.225 36.000 0.00 0.00 0.00 3.91
206 207 5.324409 ACCTTTCAAATCAATGGAGTAGCA 58.676 37.500 0.00 0.00 0.00 3.49
207 208 5.904362 ACCTTTCAAATCAATGGAGTAGC 57.096 39.130 0.00 0.00 0.00 3.58
208 209 7.917505 GCATTACCTTTCAAATCAATGGAGTAG 59.082 37.037 0.00 0.00 0.00 2.57
209 210 7.395772 TGCATTACCTTTCAAATCAATGGAGTA 59.604 33.333 0.00 0.00 0.00 2.59
210 211 6.211184 TGCATTACCTTTCAAATCAATGGAGT 59.789 34.615 0.00 0.00 0.00 3.85
211 212 6.632909 TGCATTACCTTTCAAATCAATGGAG 58.367 36.000 0.00 0.00 0.00 3.86
212 213 6.602410 TGCATTACCTTTCAAATCAATGGA 57.398 33.333 0.00 0.00 0.00 3.41
213 214 7.852971 AATGCATTACCTTTCAAATCAATGG 57.147 32.000 11.02 0.00 0.00 3.16
214 215 8.178964 CCAAATGCATTACCTTTCAAATCAATG 58.821 33.333 13.39 1.07 0.00 2.82
215 216 7.337436 CCCAAATGCATTACCTTTCAAATCAAT 59.663 33.333 13.39 0.00 0.00 2.57
216 217 6.654161 CCCAAATGCATTACCTTTCAAATCAA 59.346 34.615 13.39 0.00 0.00 2.57
217 218 6.013898 TCCCAAATGCATTACCTTTCAAATCA 60.014 34.615 13.39 0.00 0.00 2.57
218 219 6.405538 TCCCAAATGCATTACCTTTCAAATC 58.594 36.000 13.39 0.00 0.00 2.17
219 220 6.371595 TCCCAAATGCATTACCTTTCAAAT 57.628 33.333 13.39 0.00 0.00 2.32
220 221 5.792741 CTCCCAAATGCATTACCTTTCAAA 58.207 37.500 13.39 0.00 0.00 2.69
221 222 4.322650 GCTCCCAAATGCATTACCTTTCAA 60.323 41.667 13.39 0.00 0.00 2.69
222 223 3.195396 GCTCCCAAATGCATTACCTTTCA 59.805 43.478 13.39 0.00 0.00 2.69
223 224 3.448660 AGCTCCCAAATGCATTACCTTTC 59.551 43.478 13.39 1.69 0.00 2.62
224 225 3.196254 CAGCTCCCAAATGCATTACCTTT 59.804 43.478 13.39 0.00 0.00 3.11
225 226 2.762327 CAGCTCCCAAATGCATTACCTT 59.238 45.455 13.39 0.00 0.00 3.50
226 227 2.291800 ACAGCTCCCAAATGCATTACCT 60.292 45.455 13.39 0.00 0.00 3.08
227 228 2.102578 ACAGCTCCCAAATGCATTACC 58.897 47.619 13.39 0.00 0.00 2.85
228 229 3.874392 AACAGCTCCCAAATGCATTAC 57.126 42.857 13.39 0.00 0.00 1.89
229 230 3.376859 CGTAACAGCTCCCAAATGCATTA 59.623 43.478 13.39 0.00 0.00 1.90
230 231 2.164219 CGTAACAGCTCCCAAATGCATT 59.836 45.455 5.99 5.99 0.00 3.56
231 232 1.745087 CGTAACAGCTCCCAAATGCAT 59.255 47.619 0.00 0.00 0.00 3.96
232 233 1.164411 CGTAACAGCTCCCAAATGCA 58.836 50.000 0.00 0.00 0.00 3.96
233 234 1.165270 ACGTAACAGCTCCCAAATGC 58.835 50.000 0.00 0.00 0.00 3.56
234 235 2.811431 TGAACGTAACAGCTCCCAAATG 59.189 45.455 0.00 0.00 0.00 2.32
235 236 2.812011 GTGAACGTAACAGCTCCCAAAT 59.188 45.455 0.00 0.00 0.00 2.32
236 237 2.215196 GTGAACGTAACAGCTCCCAAA 58.785 47.619 0.00 0.00 0.00 3.28
237 238 1.870580 CGTGAACGTAACAGCTCCCAA 60.871 52.381 0.00 0.00 34.11 4.12
238 239 0.319211 CGTGAACGTAACAGCTCCCA 60.319 55.000 0.00 0.00 34.11 4.37
239 240 0.038892 TCGTGAACGTAACAGCTCCC 60.039 55.000 2.37 0.00 40.80 4.30
240 241 1.454653 GTTCGTGAACGTAACAGCTCC 59.545 52.381 2.37 0.00 40.80 4.70
241 242 1.454653 GGTTCGTGAACGTAACAGCTC 59.545 52.381 15.11 0.00 42.02 4.09
242 243 1.202440 TGGTTCGTGAACGTAACAGCT 60.202 47.619 15.11 0.00 42.02 4.24
243 244 1.210870 TGGTTCGTGAACGTAACAGC 58.789 50.000 15.11 5.49 42.02 4.40
244 245 3.929417 TTTGGTTCGTGAACGTAACAG 57.071 42.857 15.11 0.00 42.02 3.16
245 246 4.675190 TTTTTGGTTCGTGAACGTAACA 57.325 36.364 15.11 7.93 42.02 2.41
246 247 8.008844 TGTATATTTTTGGTTCGTGAACGTAAC 58.991 33.333 6.65 6.25 42.02 2.50
247 248 8.081208 TGTATATTTTTGGTTCGTGAACGTAA 57.919 30.769 6.65 2.55 42.02 3.18
248 249 7.621841 GCTGTATATTTTTGGTTCGTGAACGTA 60.622 37.037 6.65 0.00 42.02 3.57
249 250 6.542574 TGTATATTTTTGGTTCGTGAACGT 57.457 33.333 6.65 0.00 42.02 3.99
250 251 5.506832 GCTGTATATTTTTGGTTCGTGAACG 59.493 40.000 6.65 0.00 42.02 3.95
251 252 6.608610 AGCTGTATATTTTTGGTTCGTGAAC 58.391 36.000 4.15 4.15 40.45 3.18
252 253 6.811253 AGCTGTATATTTTTGGTTCGTGAA 57.189 33.333 0.00 0.00 0.00 3.18
253 254 6.811253 AAGCTGTATATTTTTGGTTCGTGA 57.189 33.333 0.00 0.00 0.00 4.35
254 255 7.619161 GCAAAAGCTGTATATTTTTGGTTCGTG 60.619 37.037 10.18 0.00 40.41 4.35
255 256 6.364976 GCAAAAGCTGTATATTTTTGGTTCGT 59.635 34.615 10.18 0.00 40.41 3.85
256 257 6.586082 AGCAAAAGCTGTATATTTTTGGTTCG 59.414 34.615 7.94 0.00 45.03 3.95
257 258 7.598493 TGAGCAAAAGCTGTATATTTTTGGTTC 59.402 33.333 12.88 8.65 46.37 3.62
258 259 7.441017 TGAGCAAAAGCTGTATATTTTTGGTT 58.559 30.769 12.88 0.00 46.37 3.67
260 261 7.223387 GGATGAGCAAAAGCTGTATATTTTTGG 59.777 37.037 10.18 0.00 40.41 3.28
261 262 7.043854 CGGATGAGCAAAAGCTGTATATTTTTG 60.044 37.037 0.00 5.54 42.03 2.44
262 263 6.974622 CGGATGAGCAAAAGCTGTATATTTTT 59.025 34.615 0.00 0.00 0.00 1.94
263 264 6.460123 CCGGATGAGCAAAAGCTGTATATTTT 60.460 38.462 0.00 0.00 0.00 1.82
264 265 5.009010 CCGGATGAGCAAAAGCTGTATATTT 59.991 40.000 0.00 0.00 0.00 1.40
265 266 4.516698 CCGGATGAGCAAAAGCTGTATATT 59.483 41.667 0.00 0.00 0.00 1.28
266 267 4.067896 CCGGATGAGCAAAAGCTGTATAT 58.932 43.478 0.00 0.00 0.00 0.86
267 268 3.118408 ACCGGATGAGCAAAAGCTGTATA 60.118 43.478 9.46 0.00 0.00 1.47
268 269 2.292267 CCGGATGAGCAAAAGCTGTAT 58.708 47.619 0.00 0.00 0.00 2.29
269 270 1.003118 ACCGGATGAGCAAAAGCTGTA 59.997 47.619 9.46 0.00 0.00 2.74
270 271 0.250901 ACCGGATGAGCAAAAGCTGT 60.251 50.000 9.46 0.00 0.00 4.40
271 272 0.169672 CACCGGATGAGCAAAAGCTG 59.830 55.000 9.46 0.00 0.00 4.24
272 273 0.962356 CCACCGGATGAGCAAAAGCT 60.962 55.000 9.46 0.00 0.00 3.74
273 274 1.244019 ACCACCGGATGAGCAAAAGC 61.244 55.000 9.46 0.00 0.00 3.51
274 275 1.200020 GAACCACCGGATGAGCAAAAG 59.800 52.381 9.46 0.00 0.00 2.27
275 276 1.243902 GAACCACCGGATGAGCAAAA 58.756 50.000 9.46 0.00 0.00 2.44
276 277 0.608035 GGAACCACCGGATGAGCAAA 60.608 55.000 9.46 0.00 0.00 3.68
277 278 1.002624 GGAACCACCGGATGAGCAA 60.003 57.895 9.46 0.00 0.00 3.91
278 279 0.616395 TAGGAACCACCGGATGAGCA 60.616 55.000 9.46 0.00 44.74 4.26
279 280 0.759346 ATAGGAACCACCGGATGAGC 59.241 55.000 9.46 0.00 44.74 4.26
280 281 3.895656 TCTAATAGGAACCACCGGATGAG 59.104 47.826 9.46 0.00 44.74 2.90
281 282 3.895656 CTCTAATAGGAACCACCGGATGA 59.104 47.826 9.46 0.00 44.74 2.92
282 283 3.555168 GCTCTAATAGGAACCACCGGATG 60.555 52.174 9.46 2.15 44.74 3.51
283 284 2.633481 GCTCTAATAGGAACCACCGGAT 59.367 50.000 9.46 0.00 44.74 4.18
284 285 2.037144 GCTCTAATAGGAACCACCGGA 58.963 52.381 9.46 0.00 44.74 5.14
285 286 1.070289 GGCTCTAATAGGAACCACCGG 59.930 57.143 0.00 0.00 44.74 5.28
286 287 1.269621 CGGCTCTAATAGGAACCACCG 60.270 57.143 0.00 0.00 44.74 4.94
287 288 1.761198 ACGGCTCTAATAGGAACCACC 59.239 52.381 0.00 0.00 39.35 4.61
288 289 2.822764 CACGGCTCTAATAGGAACCAC 58.177 52.381 0.00 0.00 0.00 4.16
289 290 1.138266 GCACGGCTCTAATAGGAACCA 59.862 52.381 0.00 0.00 0.00 3.67
290 291 1.867166 GCACGGCTCTAATAGGAACC 58.133 55.000 0.00 0.00 0.00 3.62
291 292 1.202382 ACGCACGGCTCTAATAGGAAC 60.202 52.381 0.00 0.00 0.00 3.62
292 293 1.108776 ACGCACGGCTCTAATAGGAA 58.891 50.000 0.00 0.00 0.00 3.36
293 294 0.384309 CACGCACGGCTCTAATAGGA 59.616 55.000 0.00 0.00 0.00 2.94
294 295 0.102481 ACACGCACGGCTCTAATAGG 59.898 55.000 0.00 0.00 0.00 2.57
295 296 2.289820 TCTACACGCACGGCTCTAATAG 59.710 50.000 0.00 0.00 0.00 1.73
296 297 2.291365 TCTACACGCACGGCTCTAATA 58.709 47.619 0.00 0.00 0.00 0.98
297 298 1.100510 TCTACACGCACGGCTCTAAT 58.899 50.000 0.00 0.00 0.00 1.73
298 299 1.065102 GATCTACACGCACGGCTCTAA 59.935 52.381 0.00 0.00 0.00 2.10
299 300 0.661552 GATCTACACGCACGGCTCTA 59.338 55.000 0.00 0.00 0.00 2.43
300 301 1.433879 GATCTACACGCACGGCTCT 59.566 57.895 0.00 0.00 0.00 4.09
301 302 1.589196 GGATCTACACGCACGGCTC 60.589 63.158 0.00 0.00 0.00 4.70
302 303 2.284798 CTGGATCTACACGCACGGCT 62.285 60.000 0.00 0.00 0.00 5.52
303 304 1.878522 CTGGATCTACACGCACGGC 60.879 63.158 0.00 0.00 0.00 5.68
304 305 0.248661 CTCTGGATCTACACGCACGG 60.249 60.000 0.00 0.00 0.00 4.94
305 306 0.867753 GCTCTGGATCTACACGCACG 60.868 60.000 0.00 0.00 0.00 5.34
306 307 0.457851 AGCTCTGGATCTACACGCAC 59.542 55.000 0.00 0.00 0.00 5.34
307 308 0.741326 GAGCTCTGGATCTACACGCA 59.259 55.000 6.43 0.00 0.00 5.24
308 309 1.028905 AGAGCTCTGGATCTACACGC 58.971 55.000 17.42 0.00 36.34 5.34
309 310 2.797792 GCAAGAGCTCTGGATCTACACG 60.798 54.545 22.98 0.21 37.20 4.49
310 311 2.820330 GCAAGAGCTCTGGATCTACAC 58.180 52.381 22.98 0.00 37.20 2.90
600 620 8.147704 TCTGATTTTATTTGGAAAAACTGGACC 58.852 33.333 0.00 0.00 32.29 4.46
653 677 1.143684 TCTTGAAAGCAACAGCTCCCT 59.856 47.619 0.00 0.00 37.72 4.20
664 691 5.115480 TGGACATTTTTGGTTCTTGAAAGC 58.885 37.500 0.00 0.00 0.00 3.51
671 698 5.357742 AAAAGCTGGACATTTTTGGTTCT 57.642 34.783 0.00 0.00 0.00 3.01
678 705 4.221482 GGATGAGGAAAAGCTGGACATTTT 59.779 41.667 0.00 0.00 0.00 1.82
694 721 2.656002 TCAGAGAACTACCGGATGAGG 58.344 52.381 9.46 0.00 37.30 3.86
806 842 1.896220 TTTGCAGAGTCCTTCGCAAT 58.104 45.000 7.45 0.00 41.43 3.56
896 957 4.688879 TGAAAGTGACTGTAAACATAGCGG 59.311 41.667 0.00 0.00 0.00 5.52
958 1019 6.890663 ATAATGCAAACATGATGGTTTTCG 57.109 33.333 0.00 0.00 38.86 3.46
981 1042 6.239600 CCTCCATATCTTGGGTCGAAATTCTA 60.240 42.308 0.00 0.00 46.45 2.10
1278 1427 0.400213 TCCTCATGTCCGTTGGCTTT 59.600 50.000 0.00 0.00 0.00 3.51
1339 1488 3.888323 TGATGAAGTGCTTTGCCTTTACA 59.112 39.130 0.00 0.00 0.00 2.41
1344 1493 3.830755 AGATTTGATGAAGTGCTTTGCCT 59.169 39.130 0.00 0.00 0.00 4.75
1479 1628 6.338937 CCCTACGTCTTTTTGTAGAGCTAAT 58.661 40.000 0.00 0.00 40.36 1.73
1497 1646 0.391263 GTCCAACAAGCTCCCCTACG 60.391 60.000 0.00 0.00 0.00 3.51
1559 1708 0.247736 CTCCTTGGAACTCCTGTCCG 59.752 60.000 0.00 0.00 36.82 4.79
1564 1713 1.072965 CAAGTGCTCCTTGGAACTCCT 59.927 52.381 8.34 0.00 45.70 3.69
1669 1818 1.787012 GGGACAAAAGCTGCACAATG 58.213 50.000 1.02 0.00 0.00 2.82
1741 1890 5.872617 TGTCTTTGAACTTCTCTTTGTCGAA 59.127 36.000 0.00 0.00 0.00 3.71
2044 2392 9.607988 TGAATTATTCAACCACTAACGATATGT 57.392 29.630 5.03 0.00 36.59 2.29
2104 2469 9.987272 TCAATCTATATACAACTGAATCCTGTG 57.013 33.333 0.00 0.00 0.00 3.66
2307 2677 7.123098 AGGTTTCATTTGCTGAATCATGTCATA 59.877 33.333 0.00 0.00 43.30 2.15
2321 2691 6.017400 TCATCAGAAAGAGGTTTCATTTGC 57.983 37.500 1.03 0.00 44.08 3.68
2400 2770 8.221965 TCTCTCGATACTACTTGCAAATCTTA 57.778 34.615 0.00 0.00 0.00 2.10
2530 2900 2.408835 CACGGCCCATCGAATTGC 59.591 61.111 0.00 0.00 0.00 3.56
2568 2938 8.937835 TGATAATATCCTCTTCATGTCCTTCAA 58.062 33.333 0.00 0.00 0.00 2.69
2681 3051 1.492176 AGCCACCTCCATATCAACCAG 59.508 52.381 0.00 0.00 0.00 4.00
2785 3155 1.077930 GCTGGCTGGATCAAGCTCA 60.078 57.895 21.48 15.78 43.06 4.26
2827 3197 7.063426 CCATATCATGTATACGGCAAGTTACTG 59.937 40.741 0.00 0.00 0.00 2.74
3043 3416 2.481185 GCAACCAATCGAAAGTAACCGA 59.519 45.455 0.00 0.00 39.25 4.69
3053 3426 1.833630 AGAGAGATGGCAACCAATCGA 59.166 47.619 0.00 0.00 36.95 3.59
3054 3427 2.208431 GAGAGAGATGGCAACCAATCG 58.792 52.381 0.00 0.00 36.95 3.34
3076 3449 4.502282 CAGCACACGTAAAAATTTGAAGCA 59.498 37.500 0.00 0.00 0.00 3.91
3082 3455 6.811170 CCAATATCCAGCACACGTAAAAATTT 59.189 34.615 0.00 0.00 0.00 1.82
3103 3476 3.833650 TCATGGCTGACACAATTTCCAAT 59.166 39.130 0.00 0.00 0.00 3.16
3210 3583 0.846015 TGCCTATGTCCATTGGGAGG 59.154 55.000 2.09 6.23 46.12 4.30
3332 3711 0.038166 TTTTGGCAGCCTCACCCTAG 59.962 55.000 14.15 0.00 0.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.