Multiple sequence alignment - TraesCS7B01G008700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G008700 chr7B 100.000 4025 0 0 1 4025 5266623 5270647 0.000000e+00 7433.0
1 TraesCS7B01G008700 chr7B 87.757 2573 246 28 474 2998 5195195 5197746 0.000000e+00 2942.0
2 TraesCS7B01G008700 chr7B 87.582 1063 123 5 859 1913 5216411 5217472 0.000000e+00 1223.0
3 TraesCS7B01G008700 chr7B 89.380 951 92 5 2048 2997 5338171 5339113 0.000000e+00 1188.0
4 TraesCS7B01G008700 chr7B 86.936 1064 123 6 859 1913 5510018 5511074 0.000000e+00 1181.0
5 TraesCS7B01G008700 chr7B 86.667 1065 130 7 859 1913 5336939 5338001 0.000000e+00 1170.0
6 TraesCS7B01G008700 chr7B 86.068 1091 137 13 1915 2998 5217525 5218607 0.000000e+00 1158.0
7 TraesCS7B01G008700 chr7B 84.484 1173 150 20 753 1913 5281901 5283053 0.000000e+00 1129.0
8 TraesCS7B01G008700 chr7B 86.070 1005 120 15 2008 2998 5504238 5505236 0.000000e+00 1062.0
9 TraesCS7B01G008700 chr7B 86.696 917 117 3 994 1909 5318490 5319402 0.000000e+00 1013.0
10 TraesCS7B01G008700 chr7B 85.714 917 127 1 997 1913 5503193 5504105 0.000000e+00 965.0
11 TraesCS7B01G008700 chr7B 84.339 613 85 5 872 1474 5317865 5318476 1.250000e-164 590.0
12 TraesCS7B01G008700 chr7B 86.553 409 32 9 183 578 5194631 5195029 2.870000e-116 429.0
13 TraesCS7B01G008700 chr7B 87.143 70 8 1 230 298 5281109 5281178 1.200000e-10 78.7
14 TraesCS7B01G008700 chr4B 91.126 1048 64 14 3000 4025 101205839 101204799 0.000000e+00 1393.0
15 TraesCS7B01G008700 chr7A 92.191 922 70 2 2078 2998 68083632 68084552 0.000000e+00 1303.0
16 TraesCS7B01G008700 chr7A 86.907 1054 125 6 872 1913 67593122 67592070 0.000000e+00 1170.0
17 TraesCS7B01G008700 chr7A 85.805 1099 138 7 1915 2998 67986104 67987199 0.000000e+00 1149.0
18 TraesCS7B01G008700 chr7A 85.805 1099 137 12 1915 2998 68030154 68031248 0.000000e+00 1147.0
19 TraesCS7B01G008700 chr7A 87.247 988 114 4 926 1913 68043073 68044048 0.000000e+00 1116.0
20 TraesCS7B01G008700 chr7A 81.570 1427 180 44 514 1913 68028726 68030096 0.000000e+00 1101.0
21 TraesCS7B01G008700 chr7A 94.426 592 26 6 2998 3586 19561738 19561151 0.000000e+00 904.0
22 TraesCS7B01G008700 chr7A 94.426 592 26 6 2998 3586 726413828 726414415 0.000000e+00 904.0
23 TraesCS7B01G008700 chr7D 88.447 1056 106 7 872 1913 64222705 64223758 0.000000e+00 1260.0
24 TraesCS7B01G008700 chr7D 86.223 1096 137 4 1915 2997 64223816 64224910 0.000000e+00 1175.0
25 TraesCS7B01G008700 chr7D 82.627 1393 178 46 542 1913 59939973 59938624 0.000000e+00 1173.0
26 TraesCS7B01G008700 chr7D 87.698 1008 113 7 859 1857 64245287 64246292 0.000000e+00 1164.0
27 TraesCS7B01G008700 chr7D 85.714 1099 140 7 1915 2998 63942760 63941664 0.000000e+00 1144.0
28 TraesCS7B01G008700 chr7D 85.942 1067 137 7 859 1913 63943883 63942818 0.000000e+00 1127.0
29 TraesCS7B01G008700 chr7D 84.557 654 55 21 183 806 64221955 64222592 1.240000e-169 606.0
30 TraesCS7B01G008700 chr7D 75.847 236 32 9 588 806 59908180 59907953 3.310000e-16 97.1
31 TraesCS7B01G008700 chr7D 97.222 36 0 1 810 844 59907894 59907859 4.340000e-05 60.2
32 TraesCS7B01G008700 chr6A 92.248 774 41 9 2998 3762 268985570 268986333 0.000000e+00 1079.0
33 TraesCS7B01G008700 chr6A 96.262 107 4 0 3919 4025 268986361 268986467 4.130000e-40 176.0
34 TraesCS7B01G008700 chr3B 95.159 599 22 5 2998 3591 119075398 119075994 0.000000e+00 939.0
35 TraesCS7B01G008700 chr2A 94.764 592 24 6 2998 3586 148596420 148595833 0.000000e+00 915.0
36 TraesCS7B01G008700 chrUn 94.108 594 26 8 2998 3586 275536878 275537467 0.000000e+00 894.0
37 TraesCS7B01G008700 chrUn 93.929 593 28 7 2998 3586 398232557 398231969 0.000000e+00 889.0
38 TraesCS7B01G008700 chr4A 92.742 620 34 8 2997 3610 626312945 626312331 0.000000e+00 885.0
39 TraesCS7B01G008700 chr1B 92.771 498 20 4 3543 4025 61671825 61672321 0.000000e+00 706.0
40 TraesCS7B01G008700 chr6D 85.128 195 17 3 3840 4024 150158166 150157974 5.310000e-44 189.0
41 TraesCS7B01G008700 chr2D 91.818 110 8 1 3915 4024 153057335 153057443 6.970000e-33 152.0
42 TraesCS7B01G008700 chr6B 95.349 86 4 0 3940 4025 520237447 520237532 1.950000e-28 137.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G008700 chr7B 5266623 5270647 4024 False 7433.000000 7433 100.0000 1 4025 1 chr7B.!!$F1 4024
1 TraesCS7B01G008700 chr7B 5194631 5197746 3115 False 1685.500000 2942 87.1550 183 2998 2 chr7B.!!$F3 2815
2 TraesCS7B01G008700 chr7B 5216411 5218607 2196 False 1190.500000 1223 86.8250 859 2998 2 chr7B.!!$F4 2139
3 TraesCS7B01G008700 chr7B 5510018 5511074 1056 False 1181.000000 1181 86.9360 859 1913 1 chr7B.!!$F2 1054
4 TraesCS7B01G008700 chr7B 5336939 5339113 2174 False 1179.000000 1188 88.0235 859 2997 2 chr7B.!!$F7 2138
5 TraesCS7B01G008700 chr7B 5503193 5505236 2043 False 1013.500000 1062 85.8920 997 2998 2 chr7B.!!$F8 2001
6 TraesCS7B01G008700 chr7B 5317865 5319402 1537 False 801.500000 1013 85.5175 872 1909 2 chr7B.!!$F6 1037
7 TraesCS7B01G008700 chr7B 5281109 5283053 1944 False 603.850000 1129 85.8135 230 1913 2 chr7B.!!$F5 1683
8 TraesCS7B01G008700 chr4B 101204799 101205839 1040 True 1393.000000 1393 91.1260 3000 4025 1 chr4B.!!$R1 1025
9 TraesCS7B01G008700 chr7A 68083632 68084552 920 False 1303.000000 1303 92.1910 2078 2998 1 chr7A.!!$F3 920
10 TraesCS7B01G008700 chr7A 67592070 67593122 1052 True 1170.000000 1170 86.9070 872 1913 1 chr7A.!!$R2 1041
11 TraesCS7B01G008700 chr7A 67986104 67987199 1095 False 1149.000000 1149 85.8050 1915 2998 1 chr7A.!!$F1 1083
12 TraesCS7B01G008700 chr7A 68028726 68031248 2522 False 1124.000000 1147 83.6875 514 2998 2 chr7A.!!$F5 2484
13 TraesCS7B01G008700 chr7A 68043073 68044048 975 False 1116.000000 1116 87.2470 926 1913 1 chr7A.!!$F2 987
14 TraesCS7B01G008700 chr7A 19561151 19561738 587 True 904.000000 904 94.4260 2998 3586 1 chr7A.!!$R1 588
15 TraesCS7B01G008700 chr7A 726413828 726414415 587 False 904.000000 904 94.4260 2998 3586 1 chr7A.!!$F4 588
16 TraesCS7B01G008700 chr7D 59938624 59939973 1349 True 1173.000000 1173 82.6270 542 1913 1 chr7D.!!$R1 1371
17 TraesCS7B01G008700 chr7D 64245287 64246292 1005 False 1164.000000 1164 87.6980 859 1857 1 chr7D.!!$F1 998
18 TraesCS7B01G008700 chr7D 63941664 63943883 2219 True 1135.500000 1144 85.8280 859 2998 2 chr7D.!!$R3 2139
19 TraesCS7B01G008700 chr7D 64221955 64224910 2955 False 1013.666667 1260 86.4090 183 2997 3 chr7D.!!$F2 2814
20 TraesCS7B01G008700 chr6A 268985570 268986467 897 False 627.500000 1079 94.2550 2998 4025 2 chr6A.!!$F1 1027
21 TraesCS7B01G008700 chr3B 119075398 119075994 596 False 939.000000 939 95.1590 2998 3591 1 chr3B.!!$F1 593
22 TraesCS7B01G008700 chr2A 148595833 148596420 587 True 915.000000 915 94.7640 2998 3586 1 chr2A.!!$R1 588
23 TraesCS7B01G008700 chrUn 275536878 275537467 589 False 894.000000 894 94.1080 2998 3586 1 chrUn.!!$F1 588
24 TraesCS7B01G008700 chrUn 398231969 398232557 588 True 889.000000 889 93.9290 2998 3586 1 chrUn.!!$R1 588
25 TraesCS7B01G008700 chr4A 626312331 626312945 614 True 885.000000 885 92.7420 2997 3610 1 chr4A.!!$R1 613

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
54 55 0.032540 CCTTTTGGGAGCAACACAGC 59.967 55.000 0.00 0.0 37.23 4.40 F
1086 1850 0.034059 ACAACCTGGAGAAGCGAGTG 59.966 55.000 0.00 0.0 0.00 3.51 F
1099 1863 1.000506 AGCGAGTGAAGAAAGGCGTAA 59.999 47.619 0.00 0.0 0.00 3.18 F
1100 1864 1.126296 GCGAGTGAAGAAAGGCGTAAC 59.874 52.381 0.00 0.0 0.00 2.50 F
1701 2960 1.217916 TTGTCCCTGTGGGTCAGAAA 58.782 50.000 2.25 0.0 46.27 2.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1380 2144 0.107993 TGGCAAGATCCTGAGCTTCG 60.108 55.000 0.00 0.00 34.42 3.79 R
2742 4093 1.152694 TGCTGGCTGGAGCAAACTT 60.153 52.632 0.20 0.00 46.05 2.66 R
2871 4222 3.748083 CATATTAGGTGCATGCCACTCT 58.252 45.455 16.68 13.69 44.08 3.24 R
2967 4319 5.192927 ACAAATGTCCTCACTTTTGACAGA 58.807 37.500 16.20 0.00 44.71 3.41 R
3241 4605 1.566018 GGCGACTCGACAGGTTTTGG 61.566 60.000 1.63 0.00 33.63 3.28 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.623848 TGCTTGCACGTTACTGGAT 57.376 47.368 0.00 0.00 0.00 3.41
19 20 1.890876 TGCTTGCACGTTACTGGATT 58.109 45.000 0.00 0.00 0.00 3.01
20 21 1.804151 TGCTTGCACGTTACTGGATTC 59.196 47.619 0.00 0.00 0.00 2.52
21 22 2.076863 GCTTGCACGTTACTGGATTCT 58.923 47.619 0.00 0.00 0.00 2.40
22 23 2.484264 GCTTGCACGTTACTGGATTCTT 59.516 45.455 0.00 0.00 0.00 2.52
23 24 3.667960 GCTTGCACGTTACTGGATTCTTG 60.668 47.826 0.00 0.00 0.00 3.02
24 25 3.394674 TGCACGTTACTGGATTCTTGA 57.605 42.857 0.00 0.00 0.00 3.02
25 26 3.937814 TGCACGTTACTGGATTCTTGAT 58.062 40.909 0.00 0.00 0.00 2.57
26 27 4.323417 TGCACGTTACTGGATTCTTGATT 58.677 39.130 0.00 0.00 0.00 2.57
27 28 4.391830 TGCACGTTACTGGATTCTTGATTC 59.608 41.667 0.00 0.00 0.00 2.52
28 29 4.201822 GCACGTTACTGGATTCTTGATTCC 60.202 45.833 5.00 5.00 0.00 3.01
29 30 4.332819 CACGTTACTGGATTCTTGATTCCC 59.667 45.833 8.52 0.00 0.00 3.97
30 31 3.555956 CGTTACTGGATTCTTGATTCCCG 59.444 47.826 8.52 5.60 0.00 5.14
31 32 4.514401 GTTACTGGATTCTTGATTCCCGT 58.486 43.478 11.36 11.36 0.00 5.28
32 33 3.721087 ACTGGATTCTTGATTCCCGTT 57.279 42.857 8.52 0.00 0.00 4.44
33 34 3.610911 ACTGGATTCTTGATTCCCGTTC 58.389 45.455 8.52 0.00 0.00 3.95
34 35 3.009033 ACTGGATTCTTGATTCCCGTTCA 59.991 43.478 8.52 0.00 0.00 3.18
35 36 3.343617 TGGATTCTTGATTCCCGTTCAC 58.656 45.455 8.52 0.00 0.00 3.18
36 37 2.683362 GGATTCTTGATTCCCGTTCACC 59.317 50.000 1.28 0.00 0.00 4.02
37 38 3.610911 GATTCTTGATTCCCGTTCACCT 58.389 45.455 0.00 0.00 0.00 4.00
38 39 3.502123 TTCTTGATTCCCGTTCACCTT 57.498 42.857 0.00 0.00 0.00 3.50
39 40 3.502123 TCTTGATTCCCGTTCACCTTT 57.498 42.857 0.00 0.00 0.00 3.11
40 41 3.827722 TCTTGATTCCCGTTCACCTTTT 58.172 40.909 0.00 0.00 0.00 2.27
41 42 3.568007 TCTTGATTCCCGTTCACCTTTTG 59.432 43.478 0.00 0.00 0.00 2.44
43 44 1.544246 GATTCCCGTTCACCTTTTGGG 59.456 52.381 0.00 0.00 46.08 4.12
44 45 0.551879 TTCCCGTTCACCTTTTGGGA 59.448 50.000 0.00 0.00 46.96 4.37
45 46 0.109723 TCCCGTTCACCTTTTGGGAG 59.890 55.000 0.00 0.00 43.85 4.30
46 47 1.524008 CCCGTTCACCTTTTGGGAGC 61.524 60.000 0.00 0.00 46.08 4.70
47 48 0.821711 CCGTTCACCTTTTGGGAGCA 60.822 55.000 0.00 0.00 46.08 4.26
48 49 1.028905 CGTTCACCTTTTGGGAGCAA 58.971 50.000 0.00 0.00 46.08 3.91
49 50 1.269051 CGTTCACCTTTTGGGAGCAAC 60.269 52.381 0.00 0.00 46.08 4.17
50 51 1.754226 GTTCACCTTTTGGGAGCAACA 59.246 47.619 0.00 0.00 46.08 3.33
51 52 1.398692 TCACCTTTTGGGAGCAACAC 58.601 50.000 0.00 0.00 46.08 3.32
52 53 1.110442 CACCTTTTGGGAGCAACACA 58.890 50.000 0.00 0.00 46.08 3.72
53 54 1.067516 CACCTTTTGGGAGCAACACAG 59.932 52.381 0.00 0.00 46.08 3.66
54 55 0.032540 CCTTTTGGGAGCAACACAGC 59.967 55.000 0.00 0.00 37.23 4.40
55 56 0.746063 CTTTTGGGAGCAACACAGCA 59.254 50.000 0.00 0.00 36.85 4.41
56 57 0.459489 TTTTGGGAGCAACACAGCAC 59.541 50.000 0.00 0.00 36.85 4.40
57 58 0.682532 TTTGGGAGCAACACAGCACA 60.683 50.000 0.00 0.00 36.85 4.57
58 59 1.383456 TTGGGAGCAACACAGCACAC 61.383 55.000 0.00 0.00 36.85 3.82
59 60 1.823470 GGGAGCAACACAGCACACA 60.823 57.895 0.00 0.00 36.85 3.72
60 61 1.356624 GGAGCAACACAGCACACAC 59.643 57.895 0.00 0.00 36.85 3.82
61 62 1.010797 GAGCAACACAGCACACACG 60.011 57.895 0.00 0.00 36.85 4.49
62 63 1.428370 GAGCAACACAGCACACACGA 61.428 55.000 0.00 0.00 36.85 4.35
63 64 0.815213 AGCAACACAGCACACACGAT 60.815 50.000 0.00 0.00 36.85 3.73
64 65 0.658244 GCAACACAGCACACACGATG 60.658 55.000 0.00 0.00 0.00 3.84
65 66 0.936600 CAACACAGCACACACGATGA 59.063 50.000 0.00 0.00 0.00 2.92
66 67 1.330213 CAACACAGCACACACGATGAA 59.670 47.619 0.00 0.00 0.00 2.57
67 68 1.220529 ACACAGCACACACGATGAAG 58.779 50.000 0.00 0.00 0.00 3.02
68 69 0.110509 CACAGCACACACGATGAAGC 60.111 55.000 0.00 0.00 34.48 3.86
69 70 1.230635 ACAGCACACACGATGAAGCC 61.231 55.000 0.00 0.00 34.71 4.35
70 71 1.071299 AGCACACACGATGAAGCCA 59.929 52.632 0.00 0.00 34.71 4.75
71 72 0.534877 AGCACACACGATGAAGCCAA 60.535 50.000 0.00 0.00 34.71 4.52
72 73 0.110056 GCACACACGATGAAGCCAAG 60.110 55.000 0.00 0.00 0.00 3.61
73 74 0.110056 CACACACGATGAAGCCAAGC 60.110 55.000 0.00 0.00 0.00 4.01
74 75 0.534877 ACACACGATGAAGCCAAGCA 60.535 50.000 0.00 0.00 0.00 3.91
75 76 0.110056 CACACGATGAAGCCAAGCAC 60.110 55.000 0.00 0.00 0.00 4.40
76 77 1.133253 CACGATGAAGCCAAGCACG 59.867 57.895 0.00 0.00 0.00 5.34
77 78 2.099062 CGATGAAGCCAAGCACGC 59.901 61.111 0.00 0.00 0.00 5.34
78 79 2.099062 GATGAAGCCAAGCACGCG 59.901 61.111 3.53 3.53 0.00 6.01
79 80 4.107051 ATGAAGCCAAGCACGCGC 62.107 61.111 5.73 0.00 38.99 6.86
94 95 4.459331 CGCGCATTGGGTGAACGG 62.459 66.667 8.75 0.00 0.00 4.44
95 96 4.776647 GCGCATTGGGTGAACGGC 62.777 66.667 0.30 0.00 0.00 5.68
96 97 4.459331 CGCATTGGGTGAACGGCG 62.459 66.667 4.80 4.80 35.25 6.46
97 98 3.361977 GCATTGGGTGAACGGCGT 61.362 61.111 6.77 6.77 0.00 5.68
98 99 2.867472 CATTGGGTGAACGGCGTC 59.133 61.111 15.17 7.82 0.00 5.19
99 100 1.963855 CATTGGGTGAACGGCGTCA 60.964 57.895 15.17 10.67 0.00 4.35
100 101 1.964373 ATTGGGTGAACGGCGTCAC 60.964 57.895 24.50 24.50 45.99 3.67
104 105 2.173382 GTGAACGGCGTCACATGC 59.827 61.111 26.29 12.31 46.00 4.06
105 106 3.047280 TGAACGGCGTCACATGCC 61.047 61.111 15.17 0.00 46.71 4.40
110 111 2.433491 GGCGTCACATGCCGTACA 60.433 61.111 0.00 0.00 40.96 2.90
111 112 2.736682 GGCGTCACATGCCGTACAC 61.737 63.158 0.00 0.00 40.96 2.90
112 113 3.066645 GCGTCACATGCCGTACACG 62.067 63.158 0.00 0.00 36.57 4.49
113 114 2.776072 GTCACATGCCGTACACGC 59.224 61.111 0.00 0.00 38.18 5.34
114 115 2.024868 GTCACATGCCGTACACGCA 61.025 57.895 7.05 7.05 38.18 5.24
115 116 1.079474 TCACATGCCGTACACGCAT 60.079 52.632 10.80 10.80 36.87 4.73
116 117 0.173708 TCACATGCCGTACACGCATA 59.826 50.000 15.06 0.64 35.52 3.14
117 118 1.003108 CACATGCCGTACACGCATAA 58.997 50.000 15.06 0.00 35.52 1.90
118 119 1.003851 ACATGCCGTACACGCATAAC 58.996 50.000 15.06 0.00 35.52 1.89
119 120 0.303493 CATGCCGTACACGCATAACC 59.697 55.000 15.06 0.00 35.52 2.85
120 121 0.812412 ATGCCGTACACGCATAACCC 60.812 55.000 14.14 0.00 35.52 4.11
121 122 1.153509 GCCGTACACGCATAACCCT 60.154 57.895 0.00 0.00 38.18 4.34
122 123 1.426041 GCCGTACACGCATAACCCTG 61.426 60.000 0.00 0.00 38.18 4.45
123 124 0.108520 CCGTACACGCATAACCCTGT 60.109 55.000 0.00 0.00 38.18 4.00
124 125 1.134753 CCGTACACGCATAACCCTGTA 59.865 52.381 0.00 0.00 38.18 2.74
125 126 2.223876 CCGTACACGCATAACCCTGTAT 60.224 50.000 0.00 0.00 38.18 2.29
126 127 2.792674 CGTACACGCATAACCCTGTATG 59.207 50.000 0.00 0.00 35.03 2.39
127 128 2.325583 ACACGCATAACCCTGTATGG 57.674 50.000 0.00 0.00 32.93 2.74
128 129 0.944386 CACGCATAACCCTGTATGGC 59.056 55.000 0.00 0.00 32.93 4.40
129 130 0.544223 ACGCATAACCCTGTATGGCA 59.456 50.000 0.00 0.00 32.93 4.92
130 131 1.142870 ACGCATAACCCTGTATGGCAT 59.857 47.619 4.88 4.88 32.93 4.40
131 132 1.806542 CGCATAACCCTGTATGGCATC 59.193 52.381 1.65 0.00 32.93 3.91
132 133 2.810032 CGCATAACCCTGTATGGCATCA 60.810 50.000 1.65 1.13 32.93 3.07
133 134 2.554032 GCATAACCCTGTATGGCATCAC 59.446 50.000 1.65 1.63 32.93 3.06
134 135 2.613026 TAACCCTGTATGGCATCACG 57.387 50.000 1.65 0.00 0.00 4.35
135 136 0.618458 AACCCTGTATGGCATCACGT 59.382 50.000 1.65 0.00 0.00 4.49
136 137 0.107703 ACCCTGTATGGCATCACGTG 60.108 55.000 9.94 9.94 0.00 4.49
149 150 4.798433 ACGTGCATCCATGTGTGT 57.202 50.000 0.00 0.00 39.65 3.72
150 151 3.019964 ACGTGCATCCATGTGTGTT 57.980 47.368 0.00 0.00 39.65 3.32
151 152 1.317613 ACGTGCATCCATGTGTGTTT 58.682 45.000 0.00 0.00 39.65 2.83
152 153 1.001487 ACGTGCATCCATGTGTGTTTG 60.001 47.619 0.00 0.00 39.65 2.93
153 154 1.266446 CGTGCATCCATGTGTGTTTGA 59.734 47.619 0.00 0.00 0.00 2.69
154 155 2.287487 CGTGCATCCATGTGTGTTTGAA 60.287 45.455 0.00 0.00 0.00 2.69
155 156 3.715495 GTGCATCCATGTGTGTTTGAAA 58.285 40.909 0.00 0.00 0.00 2.69
156 157 4.309099 GTGCATCCATGTGTGTTTGAAAT 58.691 39.130 0.00 0.00 0.00 2.17
157 158 4.386652 GTGCATCCATGTGTGTTTGAAATC 59.613 41.667 0.00 0.00 0.00 2.17
158 159 4.038883 TGCATCCATGTGTGTTTGAAATCA 59.961 37.500 0.00 0.00 0.00 2.57
159 160 4.989797 GCATCCATGTGTGTTTGAAATCAA 59.010 37.500 0.00 0.00 0.00 2.57
160 161 5.107375 GCATCCATGTGTGTTTGAAATCAAC 60.107 40.000 0.00 0.00 35.28 3.18
161 162 4.942852 TCCATGTGTGTTTGAAATCAACC 58.057 39.130 0.00 0.00 35.28 3.77
162 163 4.403752 TCCATGTGTGTTTGAAATCAACCA 59.596 37.500 0.00 0.00 35.28 3.67
163 164 4.746115 CCATGTGTGTTTGAAATCAACCAG 59.254 41.667 0.00 0.00 35.28 4.00
164 165 5.451659 CCATGTGTGTTTGAAATCAACCAGA 60.452 40.000 0.00 0.00 35.28 3.86
165 166 4.992688 TGTGTGTTTGAAATCAACCAGAC 58.007 39.130 12.16 12.16 40.96 3.51
166 167 4.035017 GTGTGTTTGAAATCAACCAGACG 58.965 43.478 5.47 0.00 34.14 4.18
167 168 3.942115 TGTGTTTGAAATCAACCAGACGA 59.058 39.130 0.00 0.00 35.28 4.20
168 169 4.035091 TGTGTTTGAAATCAACCAGACGAG 59.965 41.667 0.00 0.00 35.28 4.18
169 170 4.272504 GTGTTTGAAATCAACCAGACGAGA 59.727 41.667 0.00 0.00 35.28 4.04
170 171 4.511454 TGTTTGAAATCAACCAGACGAGAG 59.489 41.667 0.00 0.00 35.28 3.20
171 172 4.511826 GTTTGAAATCAACCAGACGAGAGT 59.488 41.667 0.00 0.00 41.13 3.24
172 173 5.694910 GTTTGAAATCAACCAGACGAGAGTA 59.305 40.000 0.00 0.00 39.29 2.59
173 174 5.926542 TTTGAAATCAACCAGACGAGAGTAG 59.073 40.000 0.00 0.00 39.29 2.57
174 175 6.239204 TTTGAAATCAACCAGACGAGAGTAGA 60.239 38.462 0.00 0.00 39.29 2.59
175 176 8.001066 TTTGAAATCAACCAGACGAGAGTAGAG 61.001 40.741 0.00 0.00 39.29 2.43
249 259 2.431454 CTGCTTCTTTCCTTGGTCTCC 58.569 52.381 0.00 0.00 0.00 3.71
288 302 1.688311 CGGTGGTCTCCTCCCAATCTA 60.688 57.143 1.97 0.00 33.97 1.98
294 308 1.211212 TCTCCTCCCAATCTACGACGA 59.789 52.381 0.00 0.00 0.00 4.20
307 321 3.033764 GACGACGACAGCGCCAAA 61.034 61.111 2.29 0.00 42.48 3.28
313 327 2.388232 CGACAGCGCCAAAGGTACC 61.388 63.158 2.29 2.73 0.00 3.34
318 332 1.302993 GCGCCAAAGGTACCCTTCA 60.303 57.895 8.74 0.00 43.92 3.02
323 337 2.040679 GCCAAAGGTACCCTTCAACCTA 59.959 50.000 8.74 0.00 45.51 3.08
324 338 3.308904 GCCAAAGGTACCCTTCAACCTAT 60.309 47.826 8.74 0.00 45.51 2.57
325 339 4.813133 GCCAAAGGTACCCTTCAACCTATT 60.813 45.833 8.74 0.00 45.51 1.73
345 362 2.116827 TCTCCTCCTCGTCTTCTGTC 57.883 55.000 0.00 0.00 0.00 3.51
380 416 6.015180 TGCTTCAGCCTCATTAATTTGTTCTT 60.015 34.615 0.00 0.00 41.18 2.52
501 905 0.107654 CCATCTGTTTCCCCCTCGAC 60.108 60.000 0.00 0.00 0.00 4.20
506 910 1.196104 TGTTTCCCCCTCGACCGATT 61.196 55.000 0.00 0.00 0.00 3.34
511 915 1.706866 TCCCCCTCGACCGATTATCTA 59.293 52.381 0.00 0.00 0.00 1.98
539 943 6.211587 TGCTATTCCATTTCAGTTGAATGG 57.788 37.500 9.10 9.10 35.72 3.16
542 946 7.395772 TGCTATTCCATTTCAGTTGAATGGTAA 59.604 33.333 13.73 8.61 35.80 2.85
577 1204 4.867608 GCTGTTGCTTTCACCAACTAAAAA 59.132 37.500 5.94 0.00 42.25 1.94
579 1206 6.292328 GCTGTTGCTTTCACCAACTAAAAATC 60.292 38.462 5.94 0.00 42.25 2.17
580 1207 6.872920 TGTTGCTTTCACCAACTAAAAATCT 58.127 32.000 5.94 0.00 42.25 2.40
581 1208 7.327214 TGTTGCTTTCACCAACTAAAAATCTT 58.673 30.769 5.94 0.00 42.25 2.40
582 1209 7.491048 TGTTGCTTTCACCAACTAAAAATCTTC 59.509 33.333 5.94 0.00 42.25 2.87
583 1210 7.106439 TGCTTTCACCAACTAAAAATCTTCA 57.894 32.000 0.00 0.00 0.00 3.02
584 1211 7.202526 TGCTTTCACCAACTAAAAATCTTCAG 58.797 34.615 0.00 0.00 0.00 3.02
585 1212 6.144563 GCTTTCACCAACTAAAAATCTTCAGC 59.855 38.462 0.00 0.00 0.00 4.26
616 1243 1.202722 TCCCGTGGTTCTCTGAAAACC 60.203 52.381 5.94 5.94 45.30 3.27
642 1278 5.117406 TGTATCTTCTAGCTGTCTCCTCA 57.883 43.478 0.00 0.00 0.00 3.86
650 1286 0.752054 GCTGTCTCCTCATCCTCCTG 59.248 60.000 0.00 0.00 0.00 3.86
658 1294 3.515502 CTCCTCATCCTCCTGTGTACAAA 59.484 47.826 0.00 0.00 0.00 2.83
738 1393 5.525378 CACTAGTTCATCTTTGGTAGCCATC 59.475 44.000 0.00 0.00 31.53 3.51
743 1398 4.264253 TCATCTTTGGTAGCCATCACAAG 58.736 43.478 0.00 0.00 31.53 3.16
745 1400 2.642311 TCTTTGGTAGCCATCACAAGGA 59.358 45.455 0.00 0.00 31.53 3.36
746 1401 2.787473 TTGGTAGCCATCACAAGGAG 57.213 50.000 0.00 0.00 31.53 3.69
748 1403 1.555075 TGGTAGCCATCACAAGGAGTC 59.445 52.381 0.00 0.00 0.00 3.36
749 1404 1.471676 GGTAGCCATCACAAGGAGTCG 60.472 57.143 0.00 0.00 0.00 4.18
750 1405 0.824109 TAGCCATCACAAGGAGTCGG 59.176 55.000 0.00 0.00 0.00 4.79
752 1407 0.321653 GCCATCACAAGGAGTCGGTT 60.322 55.000 0.00 0.00 0.00 4.44
815 1472 5.172205 CCTTCTACTACTTCTGCTTTGTCC 58.828 45.833 0.00 0.00 0.00 4.02
819 1476 4.965200 ACTACTTCTGCTTTGTCCTTCT 57.035 40.909 0.00 0.00 0.00 2.85
821 1478 3.567478 ACTTCTGCTTTGTCCTTCTGT 57.433 42.857 0.00 0.00 0.00 3.41
822 1479 3.471680 ACTTCTGCTTTGTCCTTCTGTC 58.528 45.455 0.00 0.00 0.00 3.51
823 1480 3.135530 ACTTCTGCTTTGTCCTTCTGTCT 59.864 43.478 0.00 0.00 0.00 3.41
825 1482 3.733337 TCTGCTTTGTCCTTCTGTCTTC 58.267 45.455 0.00 0.00 0.00 2.87
826 1483 3.389329 TCTGCTTTGTCCTTCTGTCTTCT 59.611 43.478 0.00 0.00 0.00 2.85
827 1484 3.470709 TGCTTTGTCCTTCTGTCTTCTG 58.529 45.455 0.00 0.00 0.00 3.02
828 1485 3.134623 TGCTTTGTCCTTCTGTCTTCTGA 59.865 43.478 0.00 0.00 0.00 3.27
829 1486 4.130118 GCTTTGTCCTTCTGTCTTCTGAA 58.870 43.478 0.00 0.00 0.00 3.02
830 1487 4.576463 GCTTTGTCCTTCTGTCTTCTGAAA 59.424 41.667 0.00 0.00 32.68 2.69
833 1490 4.451900 TGTCCTTCTGTCTTCTGAAAACC 58.548 43.478 0.00 0.00 32.68 3.27
834 1491 4.080582 TGTCCTTCTGTCTTCTGAAAACCA 60.081 41.667 0.00 0.00 32.68 3.67
836 1493 5.532779 GTCCTTCTGTCTTCTGAAAACCATT 59.467 40.000 0.00 0.00 32.68 3.16
837 1494 6.710744 GTCCTTCTGTCTTCTGAAAACCATTA 59.289 38.462 0.00 0.00 32.68 1.90
838 1495 7.391833 GTCCTTCTGTCTTCTGAAAACCATTAT 59.608 37.037 0.00 0.00 32.68 1.28
839 1496 7.391554 TCCTTCTGTCTTCTGAAAACCATTATG 59.608 37.037 0.00 0.00 32.68 1.90
840 1497 7.175641 CCTTCTGTCTTCTGAAAACCATTATGT 59.824 37.037 0.00 0.00 32.68 2.29
910 1632 1.266989 CAGGTTTTGCTTCTTCCGTCC 59.733 52.381 0.00 0.00 0.00 4.79
920 1642 3.728845 CTTCTTCCGTCCTCTGAAAACA 58.271 45.455 0.00 0.00 0.00 2.83
966 1688 2.380064 CCCAAGGGGCAATGCTATAA 57.620 50.000 4.82 0.00 35.35 0.98
967 1689 2.893424 CCCAAGGGGCAATGCTATAAT 58.107 47.619 4.82 0.00 35.35 1.28
968 1690 2.564062 CCCAAGGGGCAATGCTATAATG 59.436 50.000 4.82 0.00 35.35 1.90
969 1691 3.499338 CCAAGGGGCAATGCTATAATGA 58.501 45.455 4.82 0.00 0.00 2.57
970 1692 4.091549 CCAAGGGGCAATGCTATAATGAT 58.908 43.478 4.82 0.00 0.00 2.45
971 1693 4.159135 CCAAGGGGCAATGCTATAATGATC 59.841 45.833 4.82 0.00 0.00 2.92
972 1694 4.662966 AGGGGCAATGCTATAATGATCA 57.337 40.909 4.82 0.00 0.00 2.92
973 1695 5.001833 AGGGGCAATGCTATAATGATCAA 57.998 39.130 4.82 0.00 0.00 2.57
974 1696 5.014858 AGGGGCAATGCTATAATGATCAAG 58.985 41.667 4.82 0.00 0.00 3.02
975 1697 5.012239 GGGGCAATGCTATAATGATCAAGA 58.988 41.667 4.82 0.00 0.00 3.02
976 1698 5.125097 GGGGCAATGCTATAATGATCAAGAG 59.875 44.000 4.82 0.00 0.00 2.85
977 1699 5.392811 GGGCAATGCTATAATGATCAAGAGC 60.393 44.000 4.82 2.98 0.00 4.09
978 1700 5.182570 GGCAATGCTATAATGATCAAGAGCA 59.817 40.000 16.70 16.70 43.50 4.26
979 1701 6.294342 GGCAATGCTATAATGATCAAGAGCAA 60.294 38.462 17.92 5.15 42.70 3.91
980 1702 7.143340 GCAATGCTATAATGATCAAGAGCAAA 58.857 34.615 17.92 0.00 42.70 3.68
981 1703 7.650504 GCAATGCTATAATGATCAAGAGCAAAA 59.349 33.333 17.92 0.00 42.70 2.44
982 1704 9.524106 CAATGCTATAATGATCAAGAGCAAAAA 57.476 29.630 17.92 0.00 42.70 1.94
983 1705 9.525409 AATGCTATAATGATCAAGAGCAAAAAC 57.475 29.630 17.92 0.00 42.70 2.43
992 1756 8.075593 TGATCAAGAGCAAAAACAAATAAAGC 57.924 30.769 0.00 0.00 0.00 3.51
998 1762 5.831997 AGCAAAAACAAATAAAGCTCGAGT 58.168 33.333 15.13 0.00 0.00 4.18
1086 1850 0.034059 ACAACCTGGAGAAGCGAGTG 59.966 55.000 0.00 0.00 0.00 3.51
1099 1863 1.000506 AGCGAGTGAAGAAAGGCGTAA 59.999 47.619 0.00 0.00 0.00 3.18
1100 1864 1.126296 GCGAGTGAAGAAAGGCGTAAC 59.874 52.381 0.00 0.00 0.00 2.50
1173 1937 2.031163 GTGCCGTCAGACCAGCTT 59.969 61.111 10.73 0.00 0.00 3.74
1251 2015 5.474876 GGAAGATGTTGTTGATGACTTCCTT 59.525 40.000 0.03 0.00 44.54 3.36
1272 2036 1.296715 GCGTGTGGATGAGGGTTCT 59.703 57.895 0.00 0.00 0.00 3.01
1277 2041 2.027192 GTGTGGATGAGGGTTCTAGCAA 60.027 50.000 0.00 0.00 0.00 3.91
1380 2144 4.707030 TCAAATCTGTGATGCCATTGAC 57.293 40.909 0.00 0.00 0.00 3.18
1408 2172 1.988107 AGGATCTTGCCAAGGAGTTGA 59.012 47.619 4.30 0.00 35.46 3.18
1615 2874 2.175931 TCTATTGTTGGTGTTGGTGGGT 59.824 45.455 0.00 0.00 0.00 4.51
1620 2879 2.169590 TTGGTGTTGGTGGGTTGGGT 62.170 55.000 0.00 0.00 0.00 4.51
1653 2912 5.416952 CCTCACCAAAGCAGTTTATGAGAAT 59.583 40.000 10.89 0.00 38.88 2.40
1701 2960 1.217916 TTGTCCCTGTGGGTCAGAAA 58.782 50.000 2.25 0.00 46.27 2.52
1729 2988 3.284793 TCCGGAAAGTTTTCAAGGACA 57.715 42.857 0.00 0.00 39.16 4.02
1734 2993 5.240844 CCGGAAAGTTTTCAAGGACATACTT 59.759 40.000 0.00 0.00 38.17 2.24
1751 3010 6.010219 ACATACTTTATGGCCTTGACAAAGT 58.990 36.000 17.42 17.42 41.15 2.66
1830 3089 8.421249 AAATCAGTGAATTCCTTGTGGATAAA 57.579 30.769 2.27 0.00 42.81 1.40
1853 3112 6.808321 AAGGTATTCCTCATGTAGTGCTTA 57.192 37.500 0.00 0.00 44.35 3.09
1896 3160 4.331168 GGAATGTGTGAAGTAGTCAGATGC 59.669 45.833 0.00 0.00 36.74 3.91
1913 3177 9.000486 AGTCAGATGCATACTGAATTTCATATG 58.000 33.333 22.30 16.39 44.29 1.78
1958 3283 6.854496 TGTGCACTCGTCTTATTTTAGTTT 57.146 33.333 19.41 0.00 0.00 2.66
1965 3291 6.147328 ACTCGTCTTATTTTAGTTTGTCCTGC 59.853 38.462 0.00 0.00 0.00 4.85
1969 3295 7.307751 CGTCTTATTTTAGTTTGTCCTGCAGAA 60.308 37.037 17.39 0.00 0.00 3.02
2019 3346 8.834465 CCTTAATAGTTATGCATGCATATCCTC 58.166 37.037 34.61 24.53 38.52 3.71
2021 3348 7.621428 AATAGTTATGCATGCATATCCTCAC 57.379 36.000 34.61 28.32 38.52 3.51
2048 3377 8.268605 TGGTTATATAACTCATGTGGTTTGCTA 58.731 33.333 21.86 4.09 36.47 3.49
2062 3398 7.318141 TGTGGTTTGCTATAGTACTTACAGTC 58.682 38.462 0.00 0.00 0.00 3.51
2366 3717 4.437930 GGAGAAATGTCCAGAAGATTTGCG 60.438 45.833 0.00 0.00 36.51 4.85
2442 3793 3.330126 ACAATAGCTAGCCTCCTGGTA 57.670 47.619 12.13 0.00 35.27 3.25
2499 3850 3.054728 TGGATGTGTACAATTCGATGGGT 60.055 43.478 0.00 0.00 0.00 4.51
2516 3867 4.171878 TGGGTCATGGAGTTACACAAAA 57.828 40.909 0.00 0.00 0.00 2.44
2526 3877 5.772672 TGGAGTTACACAAAATGGTATTGCT 59.227 36.000 0.00 0.00 0.00 3.91
2626 3977 4.155644 GCATCTTTCCTGAAGACTTTGAGG 59.844 45.833 7.58 7.58 46.66 3.86
2636 3987 4.651503 TGAAGACTTTGAGGTTGAGAGAGT 59.348 41.667 0.00 0.00 0.00 3.24
2667 4018 1.376466 GAGGTGGCTTGCTGAAGGA 59.624 57.895 0.00 0.00 0.00 3.36
2730 4081 2.161808 CGGAGAGAGCTACTTCAACGAA 59.838 50.000 0.00 0.00 0.00 3.85
2739 4090 5.482908 AGCTACTTCAACGAACTCATGAAT 58.517 37.500 0.00 0.00 33.03 2.57
2742 4093 6.752351 GCTACTTCAACGAACTCATGAATAGA 59.248 38.462 0.00 0.00 33.03 1.98
2745 4096 7.155328 ACTTCAACGAACTCATGAATAGAAGT 58.845 34.615 13.17 13.17 37.66 3.01
2749 4100 6.170675 ACGAACTCATGAATAGAAGTTTGC 57.829 37.500 9.35 0.00 0.00 3.68
2773 4124 4.533311 TCCAGCCAGCATATATCAATGAGA 59.467 41.667 0.00 0.00 0.00 3.27
2784 4135 8.844244 GCATATATCAATGAGAAAGGAACAGTT 58.156 33.333 0.00 0.00 0.00 3.16
2967 4319 5.683876 ACCATCAGTTTGATAGCACTAGT 57.316 39.130 0.00 0.00 34.28 2.57
2985 4337 4.649674 ACTAGTCTGTCAAAAGTGAGGACA 59.350 41.667 0.00 0.00 38.84 4.02
2990 4342 5.066505 GTCTGTCAAAAGTGAGGACATTTGT 59.933 40.000 0.00 0.00 40.24 2.83
3033 4387 7.610865 CAACTTATCTTTATTGAAGGCCCAAA 58.389 34.615 0.00 0.00 35.98 3.28
3122 4478 8.165397 ACTCCTAGACCAATACTAATACTCCTC 58.835 40.741 0.00 0.00 0.00 3.71
3241 4605 2.352034 TCGTCGTAGCATGAAGAGTCTC 59.648 50.000 0.00 0.00 0.00 3.36
3303 4667 3.434167 GGCACATCATAGGAAGACACCAT 60.434 47.826 0.00 0.00 0.00 3.55
3441 4807 1.195115 AGCTCGGTGGCAAGAGAATA 58.805 50.000 20.96 0.00 36.65 1.75
3527 4896 1.673920 GGCTGACGGACAAAAGTTTGA 59.326 47.619 10.66 0.00 40.55 2.69
3534 4903 3.951680 ACGGACAAAAGTTTGATGGACTT 59.048 39.130 10.66 0.00 40.55 3.01
3561 4931 7.044510 GCATGACATGAGAAACACAAAATATCG 60.045 37.037 19.76 0.00 0.00 2.92
3638 5011 2.417097 GCAGTGGCGGCAAAACTT 59.583 55.556 15.50 0.00 0.00 2.66
3747 5120 2.036256 GCACCCCAATCCAGCAGT 59.964 61.111 0.00 0.00 0.00 4.40
3768 5141 1.341209 TGTAGGCAGAGGATATGCACG 59.659 52.381 0.00 0.00 45.68 5.34
3803 5176 1.604278 GAGGAACCTGTGAGCAACAAC 59.396 52.381 0.00 0.00 38.67 3.32
3851 5228 2.407428 GGTAAAGAAGCAGCCGGGC 61.407 63.158 12.11 12.11 0.00 6.13
3852 5229 1.674322 GTAAAGAAGCAGCCGGGCA 60.674 57.895 23.09 0.00 35.83 5.36
3871 5248 1.227556 GGACGGGATCGGTGGATTG 60.228 63.158 0.00 0.00 41.39 2.67
3879 5256 1.209504 GATCGGTGGATTGACTGGGAA 59.790 52.381 0.00 0.00 31.51 3.97
3894 5271 1.160329 GGGAATTGACCAGCGGATCG 61.160 60.000 1.50 0.00 0.00 3.69
3896 5273 1.776034 GAATTGACCAGCGGATCGGC 61.776 60.000 16.92 16.92 0.00 5.54
3986 5373 2.749044 CATGTGCAGCCGCTCCTT 60.749 61.111 0.00 0.00 39.64 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.804151 GAATCCAGTAACGTGCAAGCA 59.196 47.619 0.00 0.00 0.00 3.91
1 2 2.076863 AGAATCCAGTAACGTGCAAGC 58.923 47.619 0.00 0.00 0.00 4.01
2 3 3.745975 TCAAGAATCCAGTAACGTGCAAG 59.254 43.478 0.00 0.00 0.00 4.01
3 4 3.734463 TCAAGAATCCAGTAACGTGCAA 58.266 40.909 0.00 0.00 0.00 4.08
4 5 3.394674 TCAAGAATCCAGTAACGTGCA 57.605 42.857 0.00 0.00 0.00 4.57
5 6 4.201822 GGAATCAAGAATCCAGTAACGTGC 60.202 45.833 0.00 0.00 35.71 5.34
6 7 4.332819 GGGAATCAAGAATCCAGTAACGTG 59.667 45.833 6.51 0.00 37.46 4.49
7 8 4.514401 GGGAATCAAGAATCCAGTAACGT 58.486 43.478 6.51 0.00 37.46 3.99
8 9 3.555956 CGGGAATCAAGAATCCAGTAACG 59.444 47.826 6.51 0.00 37.46 3.18
9 10 4.514401 ACGGGAATCAAGAATCCAGTAAC 58.486 43.478 7.98 0.00 41.44 2.50
10 11 4.837093 ACGGGAATCAAGAATCCAGTAA 57.163 40.909 7.98 0.00 41.44 2.24
11 12 4.224147 TGAACGGGAATCAAGAATCCAGTA 59.776 41.667 9.79 0.00 42.23 2.74
12 13 3.009033 TGAACGGGAATCAAGAATCCAGT 59.991 43.478 6.51 5.45 44.45 4.00
13 14 3.375299 GTGAACGGGAATCAAGAATCCAG 59.625 47.826 6.51 4.84 37.46 3.86
14 15 3.343617 GTGAACGGGAATCAAGAATCCA 58.656 45.455 6.51 0.00 37.46 3.41
15 16 2.683362 GGTGAACGGGAATCAAGAATCC 59.317 50.000 0.00 0.00 34.85 3.01
16 17 3.610911 AGGTGAACGGGAATCAAGAATC 58.389 45.455 0.00 0.00 0.00 2.52
17 18 3.721087 AGGTGAACGGGAATCAAGAAT 57.279 42.857 0.00 0.00 0.00 2.40
18 19 3.502123 AAGGTGAACGGGAATCAAGAA 57.498 42.857 0.00 0.00 0.00 2.52
19 20 3.502123 AAAGGTGAACGGGAATCAAGA 57.498 42.857 0.00 0.00 0.00 3.02
20 21 3.305335 CCAAAAGGTGAACGGGAATCAAG 60.305 47.826 0.00 0.00 0.00 3.02
21 22 2.625790 CCAAAAGGTGAACGGGAATCAA 59.374 45.455 0.00 0.00 0.00 2.57
22 23 2.235016 CCAAAAGGTGAACGGGAATCA 58.765 47.619 0.00 0.00 0.00 2.57
23 24 1.544246 CCCAAAAGGTGAACGGGAATC 59.456 52.381 0.00 0.00 39.44 2.52
24 25 1.146152 TCCCAAAAGGTGAACGGGAAT 59.854 47.619 0.00 0.00 43.02 3.01
25 26 0.551879 TCCCAAAAGGTGAACGGGAA 59.448 50.000 0.00 0.00 43.02 3.97
26 27 0.109723 CTCCCAAAAGGTGAACGGGA 59.890 55.000 0.00 0.00 43.77 5.14
27 28 1.524008 GCTCCCAAAAGGTGAACGGG 61.524 60.000 0.00 0.00 38.34 5.28
28 29 0.821711 TGCTCCCAAAAGGTGAACGG 60.822 55.000 0.00 0.00 36.75 4.44
29 30 1.028905 TTGCTCCCAAAAGGTGAACG 58.971 50.000 0.00 0.00 36.75 3.95
30 31 1.754226 TGTTGCTCCCAAAAGGTGAAC 59.246 47.619 0.00 0.00 36.75 3.18
31 32 1.754226 GTGTTGCTCCCAAAAGGTGAA 59.246 47.619 0.00 0.00 36.75 3.18
32 33 1.341482 TGTGTTGCTCCCAAAAGGTGA 60.341 47.619 0.00 0.00 36.75 4.02
33 34 1.067516 CTGTGTTGCTCCCAAAAGGTG 59.932 52.381 0.00 0.00 36.75 4.00
34 35 1.402787 CTGTGTTGCTCCCAAAAGGT 58.597 50.000 0.00 0.00 36.75 3.50
35 36 0.032540 GCTGTGTTGCTCCCAAAAGG 59.967 55.000 0.00 0.00 31.68 3.11
36 37 0.746063 TGCTGTGTTGCTCCCAAAAG 59.254 50.000 0.00 0.00 31.68 2.27
37 38 0.459489 GTGCTGTGTTGCTCCCAAAA 59.541 50.000 0.00 0.00 31.68 2.44
38 39 0.682532 TGTGCTGTGTTGCTCCCAAA 60.683 50.000 0.00 0.00 31.68 3.28
39 40 1.077140 TGTGCTGTGTTGCTCCCAA 60.077 52.632 0.00 0.00 0.00 4.12
40 41 1.823470 GTGTGCTGTGTTGCTCCCA 60.823 57.895 0.00 0.00 0.00 4.37
41 42 1.823470 TGTGTGCTGTGTTGCTCCC 60.823 57.895 0.00 0.00 0.00 4.30
42 43 1.356624 GTGTGTGCTGTGTTGCTCC 59.643 57.895 0.00 0.00 0.00 4.70
43 44 1.010797 CGTGTGTGCTGTGTTGCTC 60.011 57.895 0.00 0.00 0.00 4.26
44 45 0.815213 ATCGTGTGTGCTGTGTTGCT 60.815 50.000 0.00 0.00 0.00 3.91
45 46 0.658244 CATCGTGTGTGCTGTGTTGC 60.658 55.000 0.00 0.00 0.00 4.17
46 47 0.936600 TCATCGTGTGTGCTGTGTTG 59.063 50.000 0.00 0.00 0.00 3.33
47 48 1.599071 CTTCATCGTGTGTGCTGTGTT 59.401 47.619 0.00 0.00 0.00 3.32
48 49 1.220529 CTTCATCGTGTGTGCTGTGT 58.779 50.000 0.00 0.00 0.00 3.72
49 50 0.110509 GCTTCATCGTGTGTGCTGTG 60.111 55.000 0.00 0.00 0.00 3.66
50 51 1.230635 GGCTTCATCGTGTGTGCTGT 61.231 55.000 0.00 0.00 0.00 4.40
51 52 1.229975 TGGCTTCATCGTGTGTGCTG 61.230 55.000 0.00 0.00 0.00 4.41
52 53 0.534877 TTGGCTTCATCGTGTGTGCT 60.535 50.000 0.00 0.00 0.00 4.40
53 54 0.110056 CTTGGCTTCATCGTGTGTGC 60.110 55.000 0.00 0.00 0.00 4.57
54 55 0.110056 GCTTGGCTTCATCGTGTGTG 60.110 55.000 0.00 0.00 0.00 3.82
55 56 0.534877 TGCTTGGCTTCATCGTGTGT 60.535 50.000 0.00 0.00 0.00 3.72
56 57 0.110056 GTGCTTGGCTTCATCGTGTG 60.110 55.000 0.00 0.00 0.00 3.82
57 58 1.568612 CGTGCTTGGCTTCATCGTGT 61.569 55.000 0.00 0.00 0.00 4.49
58 59 1.133253 CGTGCTTGGCTTCATCGTG 59.867 57.895 0.00 0.00 0.00 4.35
59 60 2.680913 GCGTGCTTGGCTTCATCGT 61.681 57.895 0.00 0.00 0.00 3.73
60 61 2.099062 GCGTGCTTGGCTTCATCG 59.901 61.111 0.00 0.00 0.00 3.84
61 62 2.099062 CGCGTGCTTGGCTTCATC 59.901 61.111 0.00 0.00 0.00 2.92
62 63 4.107051 GCGCGTGCTTGGCTTCAT 62.107 61.111 15.02 0.00 38.39 2.57
77 78 4.459331 CCGTTCACCCAATGCGCG 62.459 66.667 0.00 0.00 0.00 6.86
78 79 4.776647 GCCGTTCACCCAATGCGC 62.777 66.667 0.00 0.00 0.00 6.09
79 80 4.459331 CGCCGTTCACCCAATGCG 62.459 66.667 0.00 0.00 33.51 4.73
80 81 3.322706 GACGCCGTTCACCCAATGC 62.323 63.158 0.00 0.00 0.00 3.56
81 82 1.963855 TGACGCCGTTCACCCAATG 60.964 57.895 0.00 0.00 0.00 2.82
82 83 1.964373 GTGACGCCGTTCACCCAAT 60.964 57.895 8.11 0.00 40.15 3.16
83 84 2.589442 GTGACGCCGTTCACCCAA 60.589 61.111 8.11 0.00 40.15 4.12
84 85 3.171828 ATGTGACGCCGTTCACCCA 62.172 57.895 14.22 0.00 44.63 4.51
85 86 2.358247 ATGTGACGCCGTTCACCC 60.358 61.111 14.22 0.00 44.63 4.61
86 87 2.860293 CATGTGACGCCGTTCACC 59.140 61.111 14.22 0.00 44.63 4.02
87 88 2.173382 GCATGTGACGCCGTTCAC 59.827 61.111 11.25 11.25 45.34 3.18
88 89 3.047280 GGCATGTGACGCCGTTCA 61.047 61.111 0.00 0.00 40.35 3.18
96 97 1.358725 ATGCGTGTACGGCATGTGAC 61.359 55.000 19.69 0.00 40.23 3.67
97 98 0.173708 TATGCGTGTACGGCATGTGA 59.826 50.000 25.77 10.27 40.23 3.58
98 99 1.003108 TTATGCGTGTACGGCATGTG 58.997 50.000 25.77 0.00 40.23 3.21
99 100 1.003851 GTTATGCGTGTACGGCATGT 58.996 50.000 25.77 10.85 40.23 3.21
100 101 0.303493 GGTTATGCGTGTACGGCATG 59.697 55.000 25.77 2.25 40.23 4.06
101 102 0.812412 GGGTTATGCGTGTACGGCAT 60.812 55.000 22.65 22.65 40.23 4.40
102 103 1.448189 GGGTTATGCGTGTACGGCA 60.448 57.895 12.98 12.98 40.23 5.69
103 104 1.153509 AGGGTTATGCGTGTACGGC 60.154 57.895 6.55 2.02 40.23 5.68
104 105 0.108520 ACAGGGTTATGCGTGTACGG 60.109 55.000 6.55 0.00 40.23 4.02
105 106 2.565210 TACAGGGTTATGCGTGTACG 57.435 50.000 0.00 0.00 43.27 3.67
106 107 3.128349 CCATACAGGGTTATGCGTGTAC 58.872 50.000 0.00 0.00 0.00 2.90
107 108 2.484065 GCCATACAGGGTTATGCGTGTA 60.484 50.000 0.00 0.00 38.09 2.90
108 109 1.745827 GCCATACAGGGTTATGCGTGT 60.746 52.381 0.00 0.00 38.09 4.49
109 110 0.944386 GCCATACAGGGTTATGCGTG 59.056 55.000 0.00 0.00 38.09 5.34
110 111 0.544223 TGCCATACAGGGTTATGCGT 59.456 50.000 0.00 0.00 38.09 5.24
111 112 1.806542 GATGCCATACAGGGTTATGCG 59.193 52.381 0.00 0.00 38.09 4.73
112 113 2.554032 GTGATGCCATACAGGGTTATGC 59.446 50.000 0.00 0.00 38.09 3.14
113 114 2.807967 CGTGATGCCATACAGGGTTATG 59.192 50.000 0.00 0.00 38.09 1.90
114 115 2.438021 ACGTGATGCCATACAGGGTTAT 59.562 45.455 0.00 0.00 38.09 1.89
115 116 1.834896 ACGTGATGCCATACAGGGTTA 59.165 47.619 0.00 0.00 38.09 2.85
116 117 0.618458 ACGTGATGCCATACAGGGTT 59.382 50.000 0.00 0.00 38.09 4.11
117 118 0.107703 CACGTGATGCCATACAGGGT 60.108 55.000 10.90 0.00 38.09 4.34
118 119 2.694065 CACGTGATGCCATACAGGG 58.306 57.895 10.90 0.00 38.09 4.45
128 129 1.089112 ACACATGGATGCACGTGATG 58.911 50.000 20.49 15.78 33.56 3.07
129 130 1.089112 CACACATGGATGCACGTGAT 58.911 50.000 20.49 10.03 33.56 3.06
130 131 0.250252 ACACACATGGATGCACGTGA 60.250 50.000 20.49 4.80 32.99 4.35
131 132 0.592637 AACACACATGGATGCACGTG 59.407 50.000 12.08 12.08 34.13 4.49
132 133 1.001487 CAAACACACATGGATGCACGT 60.001 47.619 0.00 0.00 0.00 4.49
133 134 1.266446 TCAAACACACATGGATGCACG 59.734 47.619 0.00 0.00 0.00 5.34
134 135 3.367992 TTCAAACACACATGGATGCAC 57.632 42.857 0.00 0.00 0.00 4.57
135 136 4.038883 TGATTTCAAACACACATGGATGCA 59.961 37.500 0.00 0.00 0.00 3.96
136 137 4.558178 TGATTTCAAACACACATGGATGC 58.442 39.130 0.00 0.00 0.00 3.91
137 138 5.406175 GGTTGATTTCAAACACACATGGATG 59.594 40.000 3.49 0.00 42.84 3.51
138 139 5.540911 GGTTGATTTCAAACACACATGGAT 58.459 37.500 3.49 0.00 42.84 3.41
139 140 4.942852 GGTTGATTTCAAACACACATGGA 58.057 39.130 3.49 0.00 42.84 3.41
148 149 4.511826 ACTCTCGTCTGGTTGATTTCAAAC 59.488 41.667 1.31 1.31 43.57 2.93
149 150 4.703897 ACTCTCGTCTGGTTGATTTCAAA 58.296 39.130 0.00 0.00 37.63 2.69
150 151 4.336889 ACTCTCGTCTGGTTGATTTCAA 57.663 40.909 0.00 0.00 0.00 2.69
151 152 4.765339 TCTACTCTCGTCTGGTTGATTTCA 59.235 41.667 0.00 0.00 0.00 2.69
152 153 5.106078 ACTCTACTCTCGTCTGGTTGATTTC 60.106 44.000 0.00 0.00 0.00 2.17
153 154 4.767928 ACTCTACTCTCGTCTGGTTGATTT 59.232 41.667 0.00 0.00 0.00 2.17
154 155 4.156922 CACTCTACTCTCGTCTGGTTGATT 59.843 45.833 0.00 0.00 0.00 2.57
155 156 3.692101 CACTCTACTCTCGTCTGGTTGAT 59.308 47.826 0.00 0.00 0.00 2.57
156 157 3.075148 CACTCTACTCTCGTCTGGTTGA 58.925 50.000 0.00 0.00 0.00 3.18
157 158 2.814919 ACACTCTACTCTCGTCTGGTTG 59.185 50.000 0.00 0.00 0.00 3.77
158 159 2.814919 CACACTCTACTCTCGTCTGGTT 59.185 50.000 0.00 0.00 0.00 3.67
159 160 2.224572 ACACACTCTACTCTCGTCTGGT 60.225 50.000 0.00 0.00 0.00 4.00
160 161 2.428491 ACACACTCTACTCTCGTCTGG 58.572 52.381 0.00 0.00 0.00 3.86
161 162 3.498777 TCAACACACTCTACTCTCGTCTG 59.501 47.826 0.00 0.00 0.00 3.51
162 163 3.741249 TCAACACACTCTACTCTCGTCT 58.259 45.455 0.00 0.00 0.00 4.18
163 164 3.747010 TCTCAACACACTCTACTCTCGTC 59.253 47.826 0.00 0.00 0.00 4.20
164 165 3.499157 GTCTCAACACACTCTACTCTCGT 59.501 47.826 0.00 0.00 0.00 4.18
165 166 3.423776 CGTCTCAACACACTCTACTCTCG 60.424 52.174 0.00 0.00 0.00 4.04
166 167 3.747010 TCGTCTCAACACACTCTACTCTC 59.253 47.826 0.00 0.00 0.00 3.20
167 168 3.499157 GTCGTCTCAACACACTCTACTCT 59.501 47.826 0.00 0.00 0.00 3.24
168 169 3.365164 GGTCGTCTCAACACACTCTACTC 60.365 52.174 0.00 0.00 0.00 2.59
169 170 2.553172 GGTCGTCTCAACACACTCTACT 59.447 50.000 0.00 0.00 0.00 2.57
170 171 2.292569 TGGTCGTCTCAACACACTCTAC 59.707 50.000 0.00 0.00 0.00 2.59
171 172 2.292569 GTGGTCGTCTCAACACACTCTA 59.707 50.000 0.00 0.00 34.16 2.43
172 173 1.067212 GTGGTCGTCTCAACACACTCT 59.933 52.381 0.00 0.00 34.16 3.24
173 174 1.202371 TGTGGTCGTCTCAACACACTC 60.202 52.381 0.00 0.00 38.76 3.51
174 175 0.821517 TGTGGTCGTCTCAACACACT 59.178 50.000 0.00 0.00 38.76 3.55
175 176 1.647346 TTGTGGTCGTCTCAACACAC 58.353 50.000 0.00 0.00 42.84 3.82
176 177 2.388310 TTTGTGGTCGTCTCAACACA 57.612 45.000 0.00 0.00 41.59 3.72
177 178 2.869801 TGATTTGTGGTCGTCTCAACAC 59.130 45.455 0.00 0.00 0.00 3.32
178 179 2.869801 GTGATTTGTGGTCGTCTCAACA 59.130 45.455 0.00 0.00 0.00 3.33
179 180 3.131396 AGTGATTTGTGGTCGTCTCAAC 58.869 45.455 0.00 0.00 0.00 3.18
180 181 3.390135 GAGTGATTTGTGGTCGTCTCAA 58.610 45.455 0.00 0.00 0.00 3.02
181 182 2.288825 GGAGTGATTTGTGGTCGTCTCA 60.289 50.000 0.00 0.00 0.00 3.27
294 308 1.666872 GTACCTTTGGCGCTGTCGT 60.667 57.895 7.64 0.00 38.14 4.34
313 327 4.442192 CGAGGAGGAGAAATAGGTTGAAGG 60.442 50.000 0.00 0.00 0.00 3.46
318 332 3.983821 AGACGAGGAGGAGAAATAGGTT 58.016 45.455 0.00 0.00 0.00 3.50
322 336 4.601084 ACAGAAGACGAGGAGGAGAAATA 58.399 43.478 0.00 0.00 0.00 1.40
323 337 3.436243 ACAGAAGACGAGGAGGAGAAAT 58.564 45.455 0.00 0.00 0.00 2.17
324 338 2.820787 GACAGAAGACGAGGAGGAGAAA 59.179 50.000 0.00 0.00 0.00 2.52
325 339 2.438411 GACAGAAGACGAGGAGGAGAA 58.562 52.381 0.00 0.00 0.00 2.87
345 362 3.444742 TGAGGCTGAAGCAAATGTATTGG 59.555 43.478 4.43 0.00 44.36 3.16
380 416 4.707934 ACATCATGGATCTGCATCAAAACA 59.292 37.500 0.00 0.00 0.00 2.83
460 599 4.194640 GAGCAAAAGCATCATCACCTAGA 58.805 43.478 0.00 0.00 0.00 2.43
462 601 3.282021 GGAGCAAAAGCATCATCACCTA 58.718 45.455 0.00 0.00 0.00 3.08
466 605 3.380320 CAGATGGAGCAAAAGCATCATCA 59.620 43.478 18.10 0.66 34.98 3.07
467 606 3.380637 ACAGATGGAGCAAAAGCATCATC 59.619 43.478 12.05 12.05 33.34 2.92
468 607 3.362706 ACAGATGGAGCAAAAGCATCAT 58.637 40.909 0.00 0.00 0.00 2.45
501 905 7.905604 TGGAATAGCAACAATAGATAATCGG 57.094 36.000 0.00 0.00 0.00 4.18
506 910 9.851686 ACTGAAATGGAATAGCAACAATAGATA 57.148 29.630 0.00 0.00 0.00 1.98
511 915 7.230849 TCAACTGAAATGGAATAGCAACAAT 57.769 32.000 0.00 0.00 0.00 2.71
539 943 3.419915 CAACAGCTCACGAATGCATTAC 58.580 45.455 12.97 5.42 0.00 1.89
542 946 0.169672 GCAACAGCTCACGAATGCAT 59.830 50.000 0.00 0.00 34.10 3.96
584 1211 0.109132 CCACGGGATGAGCAAAAAGC 60.109 55.000 0.00 0.00 46.19 3.51
585 1212 1.247567 ACCACGGGATGAGCAAAAAG 58.752 50.000 0.00 0.00 0.00 2.27
616 1243 6.815089 AGGAGACAGCTAGAAGATACAAATG 58.185 40.000 0.00 0.00 0.00 2.32
620 1247 5.117406 TGAGGAGACAGCTAGAAGATACA 57.883 43.478 0.00 0.00 0.00 2.29
670 1311 6.682113 GCACATCATCAGAACCAGCAAATATT 60.682 38.462 0.00 0.00 0.00 1.28
738 1393 1.021202 TTGCAAACCGACTCCTTGTG 58.979 50.000 0.00 0.00 0.00 3.33
743 1398 1.611491 TCCAATTTGCAAACCGACTCC 59.389 47.619 15.41 0.00 0.00 3.85
745 1400 3.057315 CAGATCCAATTTGCAAACCGACT 60.057 43.478 15.41 6.80 0.00 4.18
746 1401 3.057596 TCAGATCCAATTTGCAAACCGAC 60.058 43.478 15.41 4.59 0.00 4.79
748 1403 3.191162 TCTCAGATCCAATTTGCAAACCG 59.809 43.478 15.41 8.35 0.00 4.44
749 1404 4.741342 CTCTCAGATCCAATTTGCAAACC 58.259 43.478 15.41 0.10 0.00 3.27
750 1405 4.082354 AGCTCTCAGATCCAATTTGCAAAC 60.082 41.667 15.41 0.04 0.00 2.93
752 1407 3.442625 CAGCTCTCAGATCCAATTTGCAA 59.557 43.478 0.00 0.00 0.00 4.08
798 1455 4.101741 ACAGAAGGACAAAGCAGAAGTAGT 59.898 41.667 0.00 0.00 0.00 2.73
815 1472 8.103948 ACATAATGGTTTTCAGAAGACAGAAG 57.896 34.615 6.19 0.00 0.00 2.85
819 1476 6.922957 GCAAACATAATGGTTTTCAGAAGACA 59.077 34.615 6.19 0.00 38.86 3.41
821 1478 7.048629 TGCAAACATAATGGTTTTCAGAAGA 57.951 32.000 0.00 0.00 38.86 2.87
822 1479 7.385752 ACATGCAAACATAATGGTTTTCAGAAG 59.614 33.333 0.00 0.00 37.33 2.85
823 1480 7.171167 CACATGCAAACATAATGGTTTTCAGAA 59.829 33.333 0.00 0.00 37.33 3.02
825 1482 6.424509 ACACATGCAAACATAATGGTTTTCAG 59.575 34.615 0.00 0.00 37.33 3.02
826 1483 6.202379 CACACATGCAAACATAATGGTTTTCA 59.798 34.615 0.00 0.00 38.86 2.69
827 1484 6.592166 CACACATGCAAACATAATGGTTTTC 58.408 36.000 0.00 0.00 38.86 2.29
828 1485 6.542574 CACACATGCAAACATAATGGTTTT 57.457 33.333 0.00 0.00 38.86 2.43
920 1642 9.979578 TTGAAACTCTGCAATACAAACATAATT 57.020 25.926 0.00 0.00 0.00 1.40
931 1653 3.826157 CCTTGGGTTGAAACTCTGCAATA 59.174 43.478 0.00 0.00 0.00 1.90
955 1677 6.250344 TGCTCTTGATCATTATAGCATTGC 57.750 37.500 14.29 0.00 35.20 3.56
956 1678 9.524106 TTTTTGCTCTTGATCATTATAGCATTG 57.476 29.630 17.29 0.00 39.50 2.82
957 1679 9.525409 GTTTTTGCTCTTGATCATTATAGCATT 57.475 29.630 17.29 0.00 39.50 3.56
958 1680 8.689061 TGTTTTTGCTCTTGATCATTATAGCAT 58.311 29.630 17.29 0.00 39.50 3.79
959 1681 8.054152 TGTTTTTGCTCTTGATCATTATAGCA 57.946 30.769 14.29 14.29 38.14 3.49
960 1682 8.915871 TTGTTTTTGCTCTTGATCATTATAGC 57.084 30.769 0.00 4.29 0.00 2.97
966 1688 8.715088 GCTTTATTTGTTTTTGCTCTTGATCAT 58.285 29.630 0.00 0.00 0.00 2.45
967 1689 7.927629 AGCTTTATTTGTTTTTGCTCTTGATCA 59.072 29.630 0.00 0.00 0.00 2.92
968 1690 8.302965 AGCTTTATTTGTTTTTGCTCTTGATC 57.697 30.769 0.00 0.00 0.00 2.92
969 1691 7.115378 CGAGCTTTATTTGTTTTTGCTCTTGAT 59.885 33.333 0.00 0.00 42.00 2.57
970 1692 6.417635 CGAGCTTTATTTGTTTTTGCTCTTGA 59.582 34.615 0.00 0.00 42.00 3.02
971 1693 6.417635 TCGAGCTTTATTTGTTTTTGCTCTTG 59.582 34.615 0.00 0.00 42.00 3.02
972 1694 6.503524 TCGAGCTTTATTTGTTTTTGCTCTT 58.496 32.000 0.00 0.00 42.00 2.85
973 1695 6.072112 TCGAGCTTTATTTGTTTTTGCTCT 57.928 33.333 0.00 0.00 42.00 4.09
974 1696 5.915196 ACTCGAGCTTTATTTGTTTTTGCTC 59.085 36.000 13.61 0.00 41.12 4.26
975 1697 5.831997 ACTCGAGCTTTATTTGTTTTTGCT 58.168 33.333 13.61 0.00 0.00 3.91
976 1698 6.510746 AACTCGAGCTTTATTTGTTTTTGC 57.489 33.333 13.61 0.00 0.00 3.68
977 1699 8.638565 CCATAACTCGAGCTTTATTTGTTTTTG 58.361 33.333 13.61 0.92 0.00 2.44
978 1700 8.573035 TCCATAACTCGAGCTTTATTTGTTTTT 58.427 29.630 13.61 0.00 0.00 1.94
979 1701 8.106247 TCCATAACTCGAGCTTTATTTGTTTT 57.894 30.769 13.61 0.00 0.00 2.43
980 1702 7.148239 CCTCCATAACTCGAGCTTTATTTGTTT 60.148 37.037 13.61 0.00 0.00 2.83
981 1703 6.316390 CCTCCATAACTCGAGCTTTATTTGTT 59.684 38.462 13.61 0.00 0.00 2.83
982 1704 5.817816 CCTCCATAACTCGAGCTTTATTTGT 59.182 40.000 13.61 0.00 0.00 2.83
983 1705 5.817816 ACCTCCATAACTCGAGCTTTATTTG 59.182 40.000 13.61 4.42 0.00 2.32
992 1756 2.544685 CAGCAACCTCCATAACTCGAG 58.455 52.381 11.84 11.84 0.00 4.04
998 1762 0.034186 CCCAGCAGCAACCTCCATAA 60.034 55.000 0.00 0.00 0.00 1.90
1233 1997 3.066621 GCACAAGGAAGTCATCAACAACA 59.933 43.478 0.00 0.00 0.00 3.33
1251 2015 2.050836 AACCCTCATCCACACGCACA 62.051 55.000 0.00 0.00 0.00 4.57
1272 2036 2.340210 TGTCTGTTGGCTTGTTGCTA 57.660 45.000 0.00 0.00 42.39 3.49
1277 2041 1.421268 TCCTCATGTCTGTTGGCTTGT 59.579 47.619 0.00 0.00 0.00 3.16
1287 2051 4.019858 TCTTGACTCGATTCCTCATGTCT 58.980 43.478 0.00 0.00 0.00 3.41
1380 2144 0.107993 TGGCAAGATCCTGAGCTTCG 60.108 55.000 0.00 0.00 34.42 3.79
1408 2172 0.968405 TACCTTTTACGCAGGTCCGT 59.032 50.000 0.00 0.00 44.08 4.69
1620 2879 2.173782 TGCTTTGGTGAGGGTTGTCTTA 59.826 45.455 0.00 0.00 0.00 2.10
1701 2960 5.174037 TGAAAACTTTCCGGATATCTGGT 57.826 39.130 26.62 8.70 43.01 4.00
1729 2988 8.644374 TTTACTTTGTCAAGGCCATAAAGTAT 57.356 30.769 18.30 3.21 41.03 2.12
1734 2993 6.547880 TGAACTTTACTTTGTCAAGGCCATAA 59.452 34.615 5.01 0.00 33.82 1.90
1751 3010 9.967451 TTGTATTATGAATGTCCCTGAACTTTA 57.033 29.630 0.00 0.00 0.00 1.85
1853 3112 6.642707 TTCCGGAAATGTACACAAAAAGAT 57.357 33.333 16.28 0.00 0.00 2.40
1930 3254 8.349983 ACTAAAATAAGACGAGTGCACAAAAAT 58.650 29.630 21.04 0.00 0.00 1.82
1958 3283 5.726980 AATGCTTAAAATTCTGCAGGACA 57.273 34.783 15.13 0.00 38.87 4.02
2001 3328 4.155462 CCAGTGAGGATATGCATGCATAAC 59.845 45.833 36.79 33.17 41.53 1.89
2019 3346 8.397906 CAAACCACATGAGTTATATAACCAGTG 58.602 37.037 19.74 19.74 36.88 3.66
2021 3348 7.283127 AGCAAACCACATGAGTTATATAACCAG 59.717 37.037 19.74 10.97 36.88 4.00
2086 3437 8.925161 TTATTTTGATAGCATTAGTTGGCAAC 57.075 30.769 22.48 22.48 0.00 4.17
2340 3691 5.768980 AATCTTCTGGACATTTCTCCTCA 57.231 39.130 0.00 0.00 0.00 3.86
2415 3766 6.155221 CCAGGAGGCTAGCTATTGTAATGATA 59.845 42.308 15.72 0.00 0.00 2.15
2442 3793 6.127619 GGTTTGGCTTTATCTGCTGATTACTT 60.128 38.462 11.65 0.00 34.32 2.24
2499 3850 7.576666 GCAATACCATTTTGTGTAACTCCATGA 60.577 37.037 0.00 0.00 38.04 3.07
2516 3867 6.252599 TCTTCATGTCCTTAGCAATACCAT 57.747 37.500 0.00 0.00 0.00 3.55
2526 3877 9.607333 AGTGATAATATCCTCTTCATGTCCTTA 57.393 33.333 0.00 0.00 0.00 2.69
2626 3977 6.173339 TCCATATCAACCAAACTCTCTCAAC 58.827 40.000 0.00 0.00 0.00 3.18
2636 3987 2.311542 AGCCACCTCCATATCAACCAAA 59.688 45.455 0.00 0.00 0.00 3.28
2693 4044 5.352284 TCTCTCCGATCTCAAATAAACTGC 58.648 41.667 0.00 0.00 0.00 4.40
2697 4048 5.860941 AGCTCTCTCCGATCTCAAATAAA 57.139 39.130 0.00 0.00 0.00 1.40
2698 4049 6.065374 AGTAGCTCTCTCCGATCTCAAATAA 58.935 40.000 0.00 0.00 0.00 1.40
2730 4081 5.809001 TGGAGCAAACTTCTATTCATGAGT 58.191 37.500 0.00 0.00 0.00 3.41
2739 4090 1.611673 GCTGGCTGGAGCAAACTTCTA 60.612 52.381 0.20 0.00 44.36 2.10
2742 4093 1.152694 TGCTGGCTGGAGCAAACTT 60.153 52.632 0.20 0.00 46.05 2.66
2749 4100 4.840271 TCATTGATATATGCTGGCTGGAG 58.160 43.478 0.00 0.00 0.00 3.86
2763 4114 8.999431 GTTACAACTGTTCCTTTCTCATTGATA 58.001 33.333 0.00 0.00 0.00 2.15
2773 4124 4.945543 ACGGAAAGTTACAACTGTTCCTTT 59.054 37.500 20.95 6.28 40.30 3.11
2784 4135 8.644216 ACCATATCATGTATACGGAAAGTTACA 58.356 33.333 0.00 0.00 33.91 2.41
2871 4222 3.748083 CATATTAGGTGCATGCCACTCT 58.252 45.455 16.68 13.69 44.08 3.24
2967 4319 5.192927 ACAAATGTCCTCACTTTTGACAGA 58.807 37.500 16.20 0.00 44.71 3.41
2985 4337 7.913674 TGCTTTCCTAACAAAAACAACAAAT 57.086 28.000 0.00 0.00 0.00 2.32
2990 4342 9.308318 GATAAGTTGCTTTCCTAACAAAAACAA 57.692 29.630 0.00 0.00 0.00 2.83
3241 4605 1.566018 GGCGACTCGACAGGTTTTGG 61.566 60.000 1.63 0.00 33.63 3.28
3441 4807 5.012239 TCTTTGCATTGTTGATCTAAGCCT 58.988 37.500 0.00 0.00 0.00 4.58
3527 4896 3.639672 TCTCATGTCATGCAAGTCCAT 57.360 42.857 8.03 0.00 0.00 3.41
3534 4903 4.915158 TTTGTGTTTCTCATGTCATGCA 57.085 36.364 8.03 0.00 0.00 3.96
3561 4931 1.787847 CTGCGTCCACAAATCCGTC 59.212 57.895 0.00 0.00 0.00 4.79
3632 5005 4.118168 AGTCACCCATGGATCAAGTTTT 57.882 40.909 15.22 0.00 0.00 2.43
3638 5011 2.092968 GCTGTTAGTCACCCATGGATCA 60.093 50.000 15.22 0.00 0.00 2.92
3747 5120 2.224042 CGTGCATATCCTCTGCCTACAA 60.224 50.000 0.00 0.00 38.89 2.41
3768 5141 0.250467 TCCTCCTTGTGCAACTGCTC 60.250 55.000 2.95 0.00 42.66 4.26
3791 5164 1.024271 GCCTTCTGTTGTTGCTCACA 58.976 50.000 0.00 0.00 0.00 3.58
3851 5228 1.686325 AATCCACCGATCCCGTCCTG 61.686 60.000 0.00 0.00 0.00 3.86
3852 5229 1.382695 AATCCACCGATCCCGTCCT 60.383 57.895 0.00 0.00 0.00 3.85
3857 5234 0.179045 CCAGTCAATCCACCGATCCC 60.179 60.000 0.00 0.00 0.00 3.85
3879 5256 2.203070 GCCGATCCGCTGGTCAAT 60.203 61.111 0.00 0.00 0.00 2.57
3907 5284 2.685017 TGGCTGCTCGTGGATCCT 60.685 61.111 14.23 0.00 0.00 3.24
3943 5330 0.894141 TATTTGGCGTTGGCAATGCT 59.106 45.000 35.38 22.40 46.84 3.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.