Multiple sequence alignment - TraesCS7B01G007800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G007800 chr7B 100.000 6861 0 0 1 6861 4311490 4318350 0.000000e+00 12670
1 TraesCS7B01G007800 chr7B 81.761 636 73 21 5541 6169 4323207 4323806 6.180000e-135 492
2 TraesCS7B01G007800 chr7B 90.873 252 17 1 1 252 4298142 4298387 3.970000e-87 333
3 TraesCS7B01G007800 chr7A 92.673 6551 268 96 391 6850 66711076 66717505 0.000000e+00 9243
4 TraesCS7B01G007800 chr7D 91.964 6533 253 99 375 6850 63730474 63736791 0.000000e+00 8905
5 TraesCS7B01G007800 chr1A 85.401 274 24 6 3692 3963 557972565 557972306 3.150000e-68 270
6 TraesCS7B01G007800 chr1B 88.235 102 9 3 6175 6275 670294494 670294593 1.210000e-22 119


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G007800 chr7B 4311490 4318350 6860 False 12670 12670 100.000 1 6861 1 chr7B.!!$F2 6860
1 TraesCS7B01G007800 chr7B 4323207 4323806 599 False 492 492 81.761 5541 6169 1 chr7B.!!$F3 628
2 TraesCS7B01G007800 chr7A 66711076 66717505 6429 False 9243 9243 92.673 391 6850 1 chr7A.!!$F1 6459
3 TraesCS7B01G007800 chr7D 63730474 63736791 6317 False 8905 8905 91.964 375 6850 1 chr7D.!!$F1 6475

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
962 1020 0.033991 TCTCTCCGTCTCCCTCTTGG 60.034 60.000 0.0 0.0 0.00 3.61 F
1378 1450 0.031716 TCTGGATCTCTCCTGTGGGG 60.032 60.000 0.0 0.0 42.59 4.96 F
1614 1696 0.179026 CATGAGAGGTGCCCATCCTG 60.179 60.000 0.0 0.0 35.20 3.86 F
1615 1697 0.326904 ATGAGAGGTGCCCATCCTGA 60.327 55.000 0.0 0.0 35.20 3.86 F
3440 3566 0.035056 CCACCCTCGCATCTTTCCTT 60.035 55.000 0.0 0.0 0.00 3.36 F
3550 3678 0.096802 TATGTTGCTTCACATGCGCG 59.903 50.000 0.0 0.0 37.93 6.86 F
4001 4137 1.339631 TGCTCGATCCATCCCGTTTTT 60.340 47.619 0.0 0.0 0.00 1.94 F
4007 4143 3.181469 CGATCCATCCCGTTTTTCCTAGA 60.181 47.826 0.0 0.0 0.00 2.43 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2246 2352 0.037512 TTTTGGCCATGCATGAACGG 60.038 50.000 28.31 12.38 0.00 4.44 R
2963 3088 0.667487 TGCTAAGCGCTCCGATATGC 60.667 55.000 12.06 8.23 40.11 3.14 R
3061 3187 1.132643 GATCCTTTCTGCAGCAGCTTG 59.867 52.381 18.43 9.17 42.74 4.01 R
3528 3656 1.529622 CGCATGTGAAGCAACATACCG 60.530 52.381 0.00 3.35 38.75 4.02 R
5204 5346 0.675837 TGCCTCAGCTCAGTTGCATC 60.676 55.000 0.00 0.00 40.80 3.91 R
5418 5560 3.242011 AGGCAGAACAAAAATGTGGGAT 58.758 40.909 0.00 0.00 0.00 3.85 R
5576 5722 2.455557 TGGCATGGACTAAACAATGGG 58.544 47.619 0.00 0.00 0.00 4.00 R
5968 6116 2.943033 AGTGGCTTATAAACACGGATGC 59.057 45.455 11.95 0.00 39.95 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 2.205022 TGCCTCAGCAGCTTATTTGT 57.795 45.000 0.00 0.00 46.52 2.83
23 24 2.517959 TGCCTCAGCAGCTTATTTGTT 58.482 42.857 0.00 0.00 46.52 2.83
24 25 2.489329 TGCCTCAGCAGCTTATTTGTTC 59.511 45.455 0.00 0.00 46.52 3.18
25 26 2.159324 GCCTCAGCAGCTTATTTGTTCC 60.159 50.000 0.00 0.00 39.53 3.62
26 27 3.350833 CCTCAGCAGCTTATTTGTTCCT 58.649 45.455 0.00 0.00 0.00 3.36
27 28 3.376546 CCTCAGCAGCTTATTTGTTCCTC 59.623 47.826 0.00 0.00 0.00 3.71
28 29 4.260170 CTCAGCAGCTTATTTGTTCCTCT 58.740 43.478 0.00 0.00 0.00 3.69
29 30 5.420725 TCAGCAGCTTATTTGTTCCTCTA 57.579 39.130 0.00 0.00 0.00 2.43
30 31 5.804639 TCAGCAGCTTATTTGTTCCTCTAA 58.195 37.500 0.00 0.00 0.00 2.10
31 32 5.643777 TCAGCAGCTTATTTGTTCCTCTAAC 59.356 40.000 0.00 0.00 38.67 2.34
32 33 5.645497 CAGCAGCTTATTTGTTCCTCTAACT 59.355 40.000 0.00 0.00 38.99 2.24
33 34 6.818644 CAGCAGCTTATTTGTTCCTCTAACTA 59.181 38.462 0.00 0.00 38.99 2.24
34 35 7.497249 CAGCAGCTTATTTGTTCCTCTAACTAT 59.503 37.037 0.00 0.00 38.99 2.12
35 36 8.049721 AGCAGCTTATTTGTTCCTCTAACTATT 58.950 33.333 0.00 0.00 38.99 1.73
36 37 8.678199 GCAGCTTATTTGTTCCTCTAACTATTT 58.322 33.333 0.00 0.00 38.99 1.40
61 62 6.790285 ATTCTTTCCATGATGTTTTGTTGC 57.210 33.333 0.00 0.00 0.00 4.17
62 63 5.273674 TCTTTCCATGATGTTTTGTTGCA 57.726 34.783 0.00 0.00 0.00 4.08
63 64 5.856156 TCTTTCCATGATGTTTTGTTGCAT 58.144 33.333 0.00 0.00 0.00 3.96
64 65 5.697178 TCTTTCCATGATGTTTTGTTGCATG 59.303 36.000 0.00 0.00 36.87 4.06
65 66 4.603989 TCCATGATGTTTTGTTGCATGT 57.396 36.364 0.00 0.00 35.71 3.21
66 67 4.558178 TCCATGATGTTTTGTTGCATGTC 58.442 39.130 0.00 0.00 35.71 3.06
67 68 4.281435 TCCATGATGTTTTGTTGCATGTCT 59.719 37.500 0.00 0.00 35.71 3.41
68 69 4.992319 CCATGATGTTTTGTTGCATGTCTT 59.008 37.500 0.00 0.00 35.71 3.01
69 70 5.107259 CCATGATGTTTTGTTGCATGTCTTG 60.107 40.000 0.00 0.00 35.71 3.02
70 71 5.259832 TGATGTTTTGTTGCATGTCTTGA 57.740 34.783 0.00 0.00 0.00 3.02
71 72 5.283294 TGATGTTTTGTTGCATGTCTTGAG 58.717 37.500 0.00 0.00 0.00 3.02
72 73 4.979943 TGTTTTGTTGCATGTCTTGAGA 57.020 36.364 0.00 0.00 0.00 3.27
73 74 4.923893 TGTTTTGTTGCATGTCTTGAGAG 58.076 39.130 0.00 0.00 0.00 3.20
74 75 3.631145 TTTGTTGCATGTCTTGAGAGC 57.369 42.857 0.00 0.00 0.00 4.09
75 76 1.150827 TGTTGCATGTCTTGAGAGCG 58.849 50.000 0.00 0.00 0.00 5.03
76 77 0.179205 GTTGCATGTCTTGAGAGCGC 60.179 55.000 0.00 0.00 0.00 5.92
77 78 1.300971 TTGCATGTCTTGAGAGCGCC 61.301 55.000 2.29 0.00 0.00 6.53
78 79 1.742880 GCATGTCTTGAGAGCGCCA 60.743 57.895 2.29 0.00 0.00 5.69
79 80 1.094073 GCATGTCTTGAGAGCGCCAT 61.094 55.000 2.29 0.00 0.00 4.40
80 81 0.656259 CATGTCTTGAGAGCGCCATG 59.344 55.000 2.29 4.00 0.00 3.66
81 82 0.463295 ATGTCTTGAGAGCGCCATGG 60.463 55.000 7.63 7.63 0.00 3.66
82 83 1.078848 GTCTTGAGAGCGCCATGGT 60.079 57.895 14.67 0.00 0.00 3.55
83 84 1.086634 GTCTTGAGAGCGCCATGGTC 61.087 60.000 14.67 2.83 45.59 4.02
94 95 4.155733 CATGGTCGCCCCGTGCTA 62.156 66.667 0.94 0.00 43.20 3.49
95 96 3.161450 ATGGTCGCCCCGTGCTAT 61.161 61.111 0.00 0.00 38.05 2.97
96 97 3.460672 ATGGTCGCCCCGTGCTATG 62.461 63.158 0.00 0.00 38.05 2.23
97 98 4.157120 GGTCGCCCCGTGCTATGT 62.157 66.667 0.00 0.00 38.05 2.29
98 99 2.890474 GTCGCCCCGTGCTATGTG 60.890 66.667 0.00 0.00 38.05 3.21
99 100 4.830765 TCGCCCCGTGCTATGTGC 62.831 66.667 0.00 0.00 43.25 4.57
100 101 4.838152 CGCCCCGTGCTATGTGCT 62.838 66.667 0.00 0.00 43.37 4.40
101 102 2.504032 GCCCCGTGCTATGTGCTA 59.496 61.111 0.00 0.00 43.37 3.49
102 103 1.595382 GCCCCGTGCTATGTGCTAG 60.595 63.158 0.00 0.00 43.37 3.42
109 110 3.713902 GCTATGTGCTAGCCATGGT 57.286 52.632 21.83 2.69 46.08 3.55
110 111 2.839486 GCTATGTGCTAGCCATGGTA 57.161 50.000 21.83 3.81 46.08 3.25
111 112 2.417719 GCTATGTGCTAGCCATGGTAC 58.582 52.381 21.83 10.39 46.08 3.34
112 113 2.037772 GCTATGTGCTAGCCATGGTACT 59.962 50.000 21.83 5.29 46.08 2.73
113 114 2.918712 ATGTGCTAGCCATGGTACTC 57.081 50.000 14.67 1.46 0.00 2.59
114 115 1.866015 TGTGCTAGCCATGGTACTCT 58.134 50.000 14.67 4.09 0.00 3.24
115 116 1.757118 TGTGCTAGCCATGGTACTCTC 59.243 52.381 14.67 1.59 0.00 3.20
116 117 2.035632 GTGCTAGCCATGGTACTCTCT 58.964 52.381 14.67 2.89 0.00 3.10
117 118 2.432510 GTGCTAGCCATGGTACTCTCTT 59.567 50.000 14.67 0.00 0.00 2.85
118 119 2.695666 TGCTAGCCATGGTACTCTCTTC 59.304 50.000 14.67 0.00 0.00 2.87
119 120 2.036604 GCTAGCCATGGTACTCTCTTCC 59.963 54.545 14.67 0.00 0.00 3.46
120 121 2.559381 AGCCATGGTACTCTCTTCCT 57.441 50.000 14.67 0.00 0.00 3.36
121 122 3.689872 AGCCATGGTACTCTCTTCCTA 57.310 47.619 14.67 0.00 0.00 2.94
122 123 4.206244 AGCCATGGTACTCTCTTCCTAT 57.794 45.455 14.67 0.00 0.00 2.57
123 124 4.561752 AGCCATGGTACTCTCTTCCTATT 58.438 43.478 14.67 0.00 0.00 1.73
124 125 4.591072 AGCCATGGTACTCTCTTCCTATTC 59.409 45.833 14.67 0.00 0.00 1.75
125 126 4.559704 GCCATGGTACTCTCTTCCTATTCG 60.560 50.000 14.67 0.00 0.00 3.34
126 127 4.827835 CCATGGTACTCTCTTCCTATTCGA 59.172 45.833 2.57 0.00 0.00 3.71
127 128 5.478679 CCATGGTACTCTCTTCCTATTCGAT 59.521 44.000 2.57 0.00 0.00 3.59
128 129 6.349777 CCATGGTACTCTCTTCCTATTCGATC 60.350 46.154 2.57 0.00 0.00 3.69
129 130 4.755629 TGGTACTCTCTTCCTATTCGATCG 59.244 45.833 9.36 9.36 0.00 3.69
130 131 3.907894 ACTCTCTTCCTATTCGATCGC 57.092 47.619 11.09 0.00 0.00 4.58
131 132 3.482436 ACTCTCTTCCTATTCGATCGCT 58.518 45.455 11.09 2.52 0.00 4.93
132 133 3.886505 ACTCTCTTCCTATTCGATCGCTT 59.113 43.478 11.09 2.32 0.00 4.68
133 134 4.339814 ACTCTCTTCCTATTCGATCGCTTT 59.660 41.667 11.09 0.00 0.00 3.51
134 135 5.163499 ACTCTCTTCCTATTCGATCGCTTTT 60.163 40.000 11.09 0.00 0.00 2.27
135 136 5.282510 TCTCTTCCTATTCGATCGCTTTTC 58.717 41.667 11.09 0.00 0.00 2.29
136 137 4.369182 TCTTCCTATTCGATCGCTTTTCC 58.631 43.478 11.09 0.00 0.00 3.13
137 138 4.099573 TCTTCCTATTCGATCGCTTTTCCT 59.900 41.667 11.09 0.00 0.00 3.36
138 139 3.978687 TCCTATTCGATCGCTTTTCCTC 58.021 45.455 11.09 0.00 0.00 3.71
139 140 3.637229 TCCTATTCGATCGCTTTTCCTCT 59.363 43.478 11.09 0.00 0.00 3.69
140 141 3.738282 CCTATTCGATCGCTTTTCCTCTG 59.262 47.826 11.09 0.00 0.00 3.35
141 142 1.359848 TTCGATCGCTTTTCCTCTGC 58.640 50.000 11.09 0.00 0.00 4.26
142 143 0.532573 TCGATCGCTTTTCCTCTGCT 59.467 50.000 11.09 0.00 0.00 4.24
143 144 0.926846 CGATCGCTTTTCCTCTGCTC 59.073 55.000 0.26 0.00 0.00 4.26
144 145 1.294857 GATCGCTTTTCCTCTGCTCC 58.705 55.000 0.00 0.00 0.00 4.70
145 146 0.107459 ATCGCTTTTCCTCTGCTCCC 60.107 55.000 0.00 0.00 0.00 4.30
146 147 1.746991 CGCTTTTCCTCTGCTCCCC 60.747 63.158 0.00 0.00 0.00 4.81
147 148 1.379176 GCTTTTCCTCTGCTCCCCC 60.379 63.158 0.00 0.00 0.00 5.40
167 168 3.010144 CCCCCACATGGAAGGAGG 58.990 66.667 0.00 0.00 37.39 4.30
168 169 2.276740 CCCCACATGGAAGGAGGC 59.723 66.667 0.00 0.00 37.39 4.70
169 170 2.276740 CCCACATGGAAGGAGGCC 59.723 66.667 0.00 0.00 37.39 5.19
170 171 2.276740 CCACATGGAAGGAGGCCC 59.723 66.667 0.00 0.00 37.39 5.80
171 172 2.276740 CACATGGAAGGAGGCCCC 59.723 66.667 0.00 0.00 0.00 5.80
172 173 2.204291 ACATGGAAGGAGGCCCCA 60.204 61.111 12.24 6.58 37.41 4.96
173 174 1.623686 ACATGGAAGGAGGCCCCAT 60.624 57.895 12.24 8.65 41.05 4.00
174 175 0.328450 ACATGGAAGGAGGCCCCATA 60.328 55.000 9.84 0.00 38.53 2.74
175 176 0.852842 CATGGAAGGAGGCCCCATAA 59.147 55.000 9.84 0.00 38.53 1.90
176 177 0.853530 ATGGAAGGAGGCCCCATAAC 59.146 55.000 8.58 0.00 38.79 1.89
177 178 0.253630 TGGAAGGAGGCCCCATAACT 60.254 55.000 12.24 0.00 37.41 2.24
178 179 0.927029 GGAAGGAGGCCCCATAACTT 59.073 55.000 12.24 2.47 37.41 2.66
179 180 1.410224 GGAAGGAGGCCCCATAACTTG 60.410 57.143 12.24 0.00 37.41 3.16
180 181 1.285078 GAAGGAGGCCCCATAACTTGT 59.715 52.381 12.24 0.00 37.41 3.16
181 182 1.382914 AGGAGGCCCCATAACTTGTT 58.617 50.000 12.24 0.00 37.41 2.83
182 183 1.285078 AGGAGGCCCCATAACTTGTTC 59.715 52.381 12.24 0.00 37.41 3.18
183 184 1.685180 GGAGGCCCCATAACTTGTTCC 60.685 57.143 0.00 0.00 34.14 3.62
184 185 0.335019 AGGCCCCATAACTTGTTCCC 59.665 55.000 0.00 0.00 0.00 3.97
185 186 0.040499 GGCCCCATAACTTGTTCCCA 59.960 55.000 0.00 0.00 0.00 4.37
186 187 1.342975 GGCCCCATAACTTGTTCCCAT 60.343 52.381 0.00 0.00 0.00 4.00
187 188 2.091555 GGCCCCATAACTTGTTCCCATA 60.092 50.000 0.00 0.00 0.00 2.74
188 189 3.222603 GCCCCATAACTTGTTCCCATAG 58.777 50.000 0.00 0.00 0.00 2.23
189 190 3.372675 GCCCCATAACTTGTTCCCATAGT 60.373 47.826 0.00 0.00 0.00 2.12
190 191 4.461198 CCCCATAACTTGTTCCCATAGTC 58.539 47.826 0.00 0.00 0.00 2.59
191 192 4.127171 CCCATAACTTGTTCCCATAGTCG 58.873 47.826 0.00 0.00 0.00 4.18
192 193 4.127171 CCATAACTTGTTCCCATAGTCGG 58.873 47.826 0.00 0.00 0.00 4.79
193 194 4.383770 CCATAACTTGTTCCCATAGTCGGT 60.384 45.833 0.00 0.00 0.00 4.69
194 195 2.762535 ACTTGTTCCCATAGTCGGTG 57.237 50.000 0.00 0.00 0.00 4.94
195 196 1.278127 ACTTGTTCCCATAGTCGGTGG 59.722 52.381 0.00 0.00 36.47 4.61
196 197 0.035820 TTGTTCCCATAGTCGGTGGC 60.036 55.000 0.00 0.00 35.35 5.01
197 198 1.520787 GTTCCCATAGTCGGTGGCG 60.521 63.158 0.00 0.00 35.35 5.69
198 199 3.379865 TTCCCATAGTCGGTGGCGC 62.380 63.158 0.00 0.00 35.35 6.53
199 200 3.849951 CCCATAGTCGGTGGCGCT 61.850 66.667 7.64 0.00 35.35 5.92
200 201 2.279517 CCATAGTCGGTGGCGCTC 60.280 66.667 7.64 0.23 0.00 5.03
201 202 2.655364 CATAGTCGGTGGCGCTCG 60.655 66.667 7.64 9.72 0.00 5.03
202 203 2.827190 ATAGTCGGTGGCGCTCGA 60.827 61.111 7.64 12.10 0.00 4.04
203 204 2.835705 ATAGTCGGTGGCGCTCGAG 61.836 63.158 17.81 8.45 36.00 4.04
213 214 4.103103 CGCTCGAGTCGGTGCTCA 62.103 66.667 22.02 0.44 35.33 4.26
214 215 2.258591 GCTCGAGTCGGTGCTCAA 59.741 61.111 15.13 0.00 35.33 3.02
215 216 2.089349 GCTCGAGTCGGTGCTCAAC 61.089 63.158 15.13 0.00 35.33 3.18
216 217 1.285950 CTCGAGTCGGTGCTCAACA 59.714 57.895 13.54 0.00 35.33 3.33
217 218 0.730834 CTCGAGTCGGTGCTCAACAG 60.731 60.000 13.54 0.00 35.33 3.16
218 219 1.007271 CGAGTCGGTGCTCAACAGT 60.007 57.895 4.10 0.00 35.33 3.55
219 220 1.278172 CGAGTCGGTGCTCAACAGTG 61.278 60.000 4.10 0.00 35.33 3.66
220 221 0.946221 GAGTCGGTGCTCAACAGTGG 60.946 60.000 0.00 0.00 35.67 4.00
221 222 1.961277 GTCGGTGCTCAACAGTGGG 60.961 63.158 0.00 0.00 0.00 4.61
222 223 2.669569 CGGTGCTCAACAGTGGGG 60.670 66.667 0.00 0.00 0.00 4.96
223 224 2.985847 GGTGCTCAACAGTGGGGC 60.986 66.667 0.00 0.00 0.00 5.80
224 225 2.113986 GTGCTCAACAGTGGGGCT 59.886 61.111 0.16 0.00 0.00 5.19
225 226 1.968540 GTGCTCAACAGTGGGGCTC 60.969 63.158 0.16 0.00 0.00 4.70
226 227 2.149383 TGCTCAACAGTGGGGCTCT 61.149 57.895 0.16 0.00 0.00 4.09
227 228 1.673665 GCTCAACAGTGGGGCTCTG 60.674 63.158 0.00 0.00 38.68 3.35
228 229 2.061220 CTCAACAGTGGGGCTCTGA 58.939 57.895 10.57 0.00 36.81 3.27
229 230 0.617413 CTCAACAGTGGGGCTCTGAT 59.383 55.000 10.57 0.00 36.81 2.90
230 231 0.615331 TCAACAGTGGGGCTCTGATC 59.385 55.000 10.57 0.00 36.81 2.92
231 232 0.617413 CAACAGTGGGGCTCTGATCT 59.383 55.000 10.57 0.00 36.81 2.75
232 233 0.908198 AACAGTGGGGCTCTGATCTC 59.092 55.000 10.57 0.00 36.81 2.75
233 234 0.252421 ACAGTGGGGCTCTGATCTCA 60.252 55.000 10.57 0.00 36.81 3.27
234 235 0.464870 CAGTGGGGCTCTGATCTCAG 59.535 60.000 0.56 0.56 45.08 3.35
235 236 0.690411 AGTGGGGCTCTGATCTCAGG 60.690 60.000 7.33 0.30 43.91 3.86
236 237 0.980231 GTGGGGCTCTGATCTCAGGT 60.980 60.000 7.33 0.00 43.91 4.00
237 238 0.252881 TGGGGCTCTGATCTCAGGTT 60.253 55.000 7.33 0.00 43.91 3.50
238 239 0.915364 GGGGCTCTGATCTCAGGTTT 59.085 55.000 7.33 0.00 43.91 3.27
239 240 1.283321 GGGGCTCTGATCTCAGGTTTT 59.717 52.381 7.33 0.00 43.91 2.43
240 241 2.363683 GGGCTCTGATCTCAGGTTTTG 58.636 52.381 7.33 0.00 43.91 2.44
241 242 2.290577 GGGCTCTGATCTCAGGTTTTGT 60.291 50.000 7.33 0.00 43.91 2.83
242 243 2.746362 GGCTCTGATCTCAGGTTTTGTG 59.254 50.000 7.33 0.00 43.91 3.33
243 244 3.406764 GCTCTGATCTCAGGTTTTGTGT 58.593 45.455 7.33 0.00 43.91 3.72
244 245 3.817647 GCTCTGATCTCAGGTTTTGTGTT 59.182 43.478 7.33 0.00 43.91 3.32
245 246 4.276926 GCTCTGATCTCAGGTTTTGTGTTT 59.723 41.667 7.33 0.00 43.91 2.83
246 247 5.755813 CTCTGATCTCAGGTTTTGTGTTTG 58.244 41.667 7.33 0.00 43.91 2.93
247 248 4.036734 TCTGATCTCAGGTTTTGTGTTTGC 59.963 41.667 7.33 0.00 43.91 3.68
248 249 2.842208 TCTCAGGTTTTGTGTTTGCG 57.158 45.000 0.00 0.00 0.00 4.85
249 250 1.403679 TCTCAGGTTTTGTGTTTGCGG 59.596 47.619 0.00 0.00 0.00 5.69
250 251 1.403679 CTCAGGTTTTGTGTTTGCGGA 59.596 47.619 0.00 0.00 0.00 5.54
251 252 1.403679 TCAGGTTTTGTGTTTGCGGAG 59.596 47.619 0.00 0.00 0.00 4.63
252 253 1.403679 CAGGTTTTGTGTTTGCGGAGA 59.596 47.619 0.00 0.00 0.00 3.71
253 254 1.404035 AGGTTTTGTGTTTGCGGAGAC 59.596 47.619 0.00 0.00 0.00 3.36
254 255 1.535226 GGTTTTGTGTTTGCGGAGACC 60.535 52.381 0.00 0.00 0.00 3.85
255 256 1.133407 GTTTTGTGTTTGCGGAGACCA 59.867 47.619 0.00 0.00 0.00 4.02
256 257 1.464734 TTTGTGTTTGCGGAGACCAA 58.535 45.000 0.00 0.00 0.00 3.67
257 258 1.464734 TTGTGTTTGCGGAGACCAAA 58.535 45.000 0.00 0.00 0.00 3.28
258 259 0.736053 TGTGTTTGCGGAGACCAAAC 59.264 50.000 9.38 9.38 44.63 2.93
260 261 1.021202 TGTTTGCGGAGACCAAACAG 58.979 50.000 13.72 0.00 46.70 3.16
261 262 0.310854 GTTTGCGGAGACCAAACAGG 59.689 55.000 10.97 0.00 44.21 4.00
271 272 3.396951 CCAAACAGGTGAAGTCGGT 57.603 52.632 0.00 0.00 0.00 4.69
272 273 0.944386 CCAAACAGGTGAAGTCGGTG 59.056 55.000 0.00 0.00 0.00 4.94
273 274 0.307760 CAAACAGGTGAAGTCGGTGC 59.692 55.000 0.00 0.00 0.00 5.01
274 275 0.818040 AAACAGGTGAAGTCGGTGCC 60.818 55.000 0.00 0.00 0.00 5.01
275 276 1.978455 AACAGGTGAAGTCGGTGCCA 61.978 55.000 0.00 0.00 0.00 4.92
276 277 1.227823 CAGGTGAAGTCGGTGCCAA 60.228 57.895 0.00 0.00 0.00 4.52
277 278 1.071471 AGGTGAAGTCGGTGCCAAG 59.929 57.895 0.00 0.00 0.00 3.61
278 279 1.966451 GGTGAAGTCGGTGCCAAGG 60.966 63.158 0.00 0.00 0.00 3.61
279 280 1.070786 GTGAAGTCGGTGCCAAGGA 59.929 57.895 0.00 0.00 0.00 3.36
280 281 0.951040 GTGAAGTCGGTGCCAAGGAG 60.951 60.000 0.00 0.00 0.00 3.69
281 282 1.118965 TGAAGTCGGTGCCAAGGAGA 61.119 55.000 0.00 0.00 0.00 3.71
282 283 0.390472 GAAGTCGGTGCCAAGGAGAG 60.390 60.000 0.00 0.00 0.00 3.20
283 284 2.435059 GTCGGTGCCAAGGAGAGC 60.435 66.667 0.00 0.00 0.00 4.09
284 285 4.069232 TCGGTGCCAAGGAGAGCG 62.069 66.667 4.40 4.40 0.00 5.03
285 286 4.379243 CGGTGCCAAGGAGAGCGT 62.379 66.667 0.00 0.00 0.00 5.07
286 287 2.743928 GGTGCCAAGGAGAGCGTG 60.744 66.667 0.00 0.00 0.00 5.34
287 288 2.031163 GTGCCAAGGAGAGCGTGT 59.969 61.111 0.00 0.00 0.00 4.49
288 289 2.029844 GTGCCAAGGAGAGCGTGTC 61.030 63.158 0.00 0.00 0.00 3.67
289 290 2.811317 GCCAAGGAGAGCGTGTCG 60.811 66.667 0.00 0.00 0.00 4.35
290 291 2.125912 CCAAGGAGAGCGTGTCGG 60.126 66.667 0.00 0.00 0.00 4.79
291 292 2.636412 CCAAGGAGAGCGTGTCGGA 61.636 63.158 0.00 0.00 0.00 4.55
292 293 1.513158 CAAGGAGAGCGTGTCGGAT 59.487 57.895 0.00 0.00 0.00 4.18
293 294 0.526524 CAAGGAGAGCGTGTCGGATC 60.527 60.000 0.00 0.00 0.00 3.36
294 295 0.681564 AAGGAGAGCGTGTCGGATCT 60.682 55.000 0.00 0.00 34.92 2.75
295 296 1.064946 GGAGAGCGTGTCGGATCTG 59.935 63.158 0.00 0.00 31.79 2.90
296 297 1.587613 GAGAGCGTGTCGGATCTGC 60.588 63.158 0.00 0.00 31.79 4.26
297 298 2.583593 GAGCGTGTCGGATCTGCC 60.584 66.667 0.00 0.00 0.00 4.85
298 299 3.356639 GAGCGTGTCGGATCTGCCA 62.357 63.158 0.00 0.00 35.94 4.92
299 300 3.188786 GCGTGTCGGATCTGCCAC 61.189 66.667 5.61 5.61 35.94 5.01
300 301 2.880879 CGTGTCGGATCTGCCACG 60.881 66.667 22.05 22.05 43.70 4.94
301 302 2.571757 GTGTCGGATCTGCCACGA 59.428 61.111 0.00 0.00 35.94 4.35
303 304 2.579787 GTCGGATCTGCCACGACG 60.580 66.667 5.84 0.00 45.82 5.12
304 305 3.060000 TCGGATCTGCCACGACGT 61.060 61.111 0.00 0.00 35.94 4.34
305 306 2.579787 CGGATCTGCCACGACGTC 60.580 66.667 5.18 5.18 35.94 4.34
306 307 2.571757 GGATCTGCCACGACGTCA 59.428 61.111 17.16 0.00 36.34 4.35
307 308 1.805945 GGATCTGCCACGACGTCAC 60.806 63.158 17.16 2.09 36.34 3.67
308 309 1.080772 GATCTGCCACGACGTCACA 60.081 57.895 17.16 6.87 0.00 3.58
309 310 1.344942 GATCTGCCACGACGTCACAC 61.345 60.000 17.16 2.09 0.00 3.82
310 311 2.082629 ATCTGCCACGACGTCACACA 62.083 55.000 17.16 6.86 0.00 3.72
311 312 2.583868 TGCCACGACGTCACACAC 60.584 61.111 17.16 0.96 0.00 3.82
312 313 2.583868 GCCACGACGTCACACACA 60.584 61.111 17.16 0.00 0.00 3.72
313 314 2.867091 GCCACGACGTCACACACAC 61.867 63.158 17.16 0.00 0.00 3.82
314 315 1.517475 CCACGACGTCACACACACA 60.517 57.895 17.16 0.00 0.00 3.72
315 316 0.874175 CCACGACGTCACACACACAT 60.874 55.000 17.16 0.00 0.00 3.21
316 317 0.229500 CACGACGTCACACACACATG 59.771 55.000 17.16 0.00 0.00 3.21
317 318 0.874175 ACGACGTCACACACACATGG 60.874 55.000 17.16 0.00 0.00 3.66
318 319 1.569493 GACGTCACACACACATGGC 59.431 57.895 11.55 0.00 0.00 4.40
319 320 1.153269 ACGTCACACACACATGGCA 60.153 52.632 0.00 0.00 0.00 4.92
320 321 0.746204 ACGTCACACACACATGGCAA 60.746 50.000 0.00 0.00 0.00 4.52
321 322 0.380024 CGTCACACACACATGGCAAA 59.620 50.000 0.00 0.00 0.00 3.68
322 323 1.202234 CGTCACACACACATGGCAAAA 60.202 47.619 0.00 0.00 0.00 2.44
323 324 2.733542 CGTCACACACACATGGCAAAAA 60.734 45.455 0.00 0.00 0.00 1.94
324 325 3.456280 GTCACACACACATGGCAAAAAT 58.544 40.909 0.00 0.00 0.00 1.82
325 326 3.245754 GTCACACACACATGGCAAAAATG 59.754 43.478 0.00 0.00 0.00 2.32
326 327 3.118847 TCACACACACATGGCAAAAATGT 60.119 39.130 0.00 0.00 38.81 2.71
327 328 3.622163 CACACACACATGGCAAAAATGTT 59.378 39.130 0.00 0.00 36.10 2.71
328 329 3.622163 ACACACACATGGCAAAAATGTTG 59.378 39.130 0.00 0.00 36.10 3.33
329 330 2.613133 ACACACATGGCAAAAATGTTGC 59.387 40.909 0.00 0.00 44.22 4.17
336 337 1.799544 GCAAAAATGTTGCCCTGGAG 58.200 50.000 0.00 0.00 39.38 3.86
337 338 1.344114 GCAAAAATGTTGCCCTGGAGA 59.656 47.619 0.00 0.00 39.38 3.71
338 339 2.027837 GCAAAAATGTTGCCCTGGAGAT 60.028 45.455 0.00 0.00 39.38 2.75
339 340 3.557686 GCAAAAATGTTGCCCTGGAGATT 60.558 43.478 0.00 0.00 39.38 2.40
340 341 4.644498 CAAAAATGTTGCCCTGGAGATTT 58.356 39.130 0.00 0.00 0.00 2.17
341 342 3.967332 AAATGTTGCCCTGGAGATTTG 57.033 42.857 0.00 0.00 0.00 2.32
342 343 1.188863 ATGTTGCCCTGGAGATTTGC 58.811 50.000 0.00 0.00 0.00 3.68
343 344 1.243342 TGTTGCCCTGGAGATTTGCG 61.243 55.000 0.00 0.00 0.00 4.85
344 345 0.960364 GTTGCCCTGGAGATTTGCGA 60.960 55.000 0.00 0.00 0.00 5.10
345 346 0.960364 TTGCCCTGGAGATTTGCGAC 60.960 55.000 0.00 0.00 0.00 5.19
346 347 1.078143 GCCCTGGAGATTTGCGACT 60.078 57.895 0.00 0.00 0.00 4.18
347 348 1.092345 GCCCTGGAGATTTGCGACTC 61.092 60.000 0.00 0.00 0.00 3.36
348 349 0.539051 CCCTGGAGATTTGCGACTCT 59.461 55.000 0.00 0.00 34.11 3.24
349 350 1.065854 CCCTGGAGATTTGCGACTCTT 60.066 52.381 0.00 0.00 34.11 2.85
350 351 2.168521 CCCTGGAGATTTGCGACTCTTA 59.831 50.000 0.00 0.00 34.11 2.10
351 352 3.452474 CCTGGAGATTTGCGACTCTTAG 58.548 50.000 0.00 0.00 34.11 2.18
352 353 3.131223 CCTGGAGATTTGCGACTCTTAGA 59.869 47.826 0.00 0.00 34.11 2.10
353 354 4.202202 CCTGGAGATTTGCGACTCTTAGAT 60.202 45.833 0.00 0.00 34.11 1.98
354 355 4.938080 TGGAGATTTGCGACTCTTAGATC 58.062 43.478 0.00 0.00 34.11 2.75
355 356 3.978217 GGAGATTTGCGACTCTTAGATCG 59.022 47.826 8.81 8.81 41.32 3.69
356 357 3.971150 AGATTTGCGACTCTTAGATCGG 58.029 45.455 13.00 0.00 38.78 4.18
357 358 3.632604 AGATTTGCGACTCTTAGATCGGA 59.367 43.478 13.00 9.13 38.78 4.55
358 359 2.846039 TTGCGACTCTTAGATCGGAC 57.154 50.000 13.00 2.50 38.46 4.79
359 360 0.656259 TGCGACTCTTAGATCGGACG 59.344 55.000 13.00 2.98 38.78 4.79
360 361 0.041135 GCGACTCTTAGATCGGACGG 60.041 60.000 13.00 0.00 38.78 4.79
361 362 0.041135 CGACTCTTAGATCGGACGGC 60.041 60.000 6.29 0.00 34.67 5.68
362 363 1.310904 GACTCTTAGATCGGACGGCT 58.689 55.000 0.00 0.00 0.00 5.52
363 364 1.002251 GACTCTTAGATCGGACGGCTG 60.002 57.143 0.00 0.00 0.00 4.85
364 365 0.318275 CTCTTAGATCGGACGGCTGC 60.318 60.000 0.00 0.00 0.00 5.25
365 366 1.658717 CTTAGATCGGACGGCTGCG 60.659 63.158 0.00 0.00 0.00 5.18
366 367 3.133767 TTAGATCGGACGGCTGCGG 62.134 63.158 5.60 5.60 0.00 5.69
368 369 4.933064 GATCGGACGGCTGCGGAG 62.933 72.222 14.45 0.00 0.00 4.63
385 386 1.207329 GGAGGCCGACAGTAAGTTCAT 59.793 52.381 0.00 0.00 0.00 2.57
438 439 1.092345 GCGAAGGAGTGGAAGGATGC 61.092 60.000 0.00 0.00 0.00 3.91
478 490 7.428826 GCCTGCTGTAGATAAATAAAAGCAAT 58.571 34.615 0.00 0.00 38.59 3.56
482 494 6.642540 GCTGTAGATAAATAAAAGCAATGCCC 59.357 38.462 0.00 0.00 0.00 5.36
492 514 1.750399 GCAATGCCCATGTCGGAGT 60.750 57.895 0.00 0.00 36.56 3.85
552 574 5.700722 AAAACCCTTCCATTTTACGTCTC 57.299 39.130 0.00 0.00 0.00 3.36
556 585 2.618053 CTTCCATTTTACGTCTCGGCT 58.382 47.619 0.00 0.00 0.00 5.52
559 588 1.075542 CATTTTACGTCTCGGCTGCA 58.924 50.000 0.50 0.00 0.00 4.41
909 961 1.186267 GGCGGGATCCTCCTCGTTAT 61.186 60.000 12.58 0.00 36.57 1.89
910 962 0.680061 GCGGGATCCTCCTCGTTATT 59.320 55.000 12.58 0.00 36.57 1.40
911 963 1.605712 GCGGGATCCTCCTCGTTATTG 60.606 57.143 12.58 0.00 36.57 1.90
954 1012 0.538746 GGAGGGGATCTCTCCGTCTC 60.539 65.000 16.06 4.10 43.11 3.36
955 1013 0.538746 GAGGGGATCTCTCCGTCTCC 60.539 65.000 0.00 0.00 43.11 3.71
956 1014 1.532078 GGGGATCTCTCCGTCTCCC 60.532 68.421 0.00 0.00 45.64 4.30
957 1015 1.539665 GGGATCTCTCCGTCTCCCT 59.460 63.158 0.00 0.00 43.45 4.20
958 1016 0.538746 GGGATCTCTCCGTCTCCCTC 60.539 65.000 0.00 0.00 43.45 4.30
960 1018 1.133606 GGATCTCTCCGTCTCCCTCTT 60.134 57.143 0.00 0.00 0.00 2.85
962 1020 0.033991 TCTCTCCGTCTCCCTCTTGG 60.034 60.000 0.00 0.00 0.00 3.61
963 1021 1.671901 CTCTCCGTCTCCCTCTTGGC 61.672 65.000 0.00 0.00 0.00 4.52
965 1023 4.821589 CCGTCTCCCTCTTGGCGC 62.822 72.222 0.00 0.00 0.00 6.53
966 1024 3.764466 CGTCTCCCTCTTGGCGCT 61.764 66.667 7.64 0.00 0.00 5.92
967 1025 2.185608 GTCTCCCTCTTGGCGCTC 59.814 66.667 7.64 0.00 0.00 5.03
968 1026 3.452786 TCTCCCTCTTGGCGCTCG 61.453 66.667 7.64 0.00 0.00 5.03
969 1027 3.452786 CTCCCTCTTGGCGCTCGA 61.453 66.667 7.64 0.02 0.00 4.04
970 1028 3.423162 CTCCCTCTTGGCGCTCGAG 62.423 68.421 8.45 8.45 0.00 4.04
971 1029 4.521062 CCCTCTTGGCGCTCGAGG 62.521 72.222 23.90 23.90 43.11 4.63
972 1030 3.452786 CCTCTTGGCGCTCGAGGA 61.453 66.667 25.55 9.46 45.67 3.71
973 1031 2.103934 CTCTTGGCGCTCGAGGAG 59.896 66.667 15.58 7.14 0.00 3.69
974 1032 3.423162 CTCTTGGCGCTCGAGGAGG 62.423 68.421 15.58 0.00 0.00 4.30
975 1033 4.521062 CTTGGCGCTCGAGGAGGG 62.521 72.222 15.58 5.43 43.96 4.30
985 1043 4.364686 GAGGAGGGGGTGGGGGAA 62.365 72.222 0.00 0.00 0.00 3.97
987 1045 4.364686 GGAGGGGGTGGGGGAAGA 62.365 72.222 0.00 0.00 0.00 2.87
1170 1237 3.151022 GGAGTCGGAGCAGGAGGG 61.151 72.222 0.00 0.00 0.00 4.30
1336 1408 1.457455 CTCTGCCCCCTCTCCTCTC 60.457 68.421 0.00 0.00 0.00 3.20
1340 1412 2.710826 GCCCCCTCTCCTCTCCTCT 61.711 68.421 0.00 0.00 0.00 3.69
1343 1415 1.620259 CCCTCTCCTCTCCTCTGCT 59.380 63.158 0.00 0.00 0.00 4.24
1346 1418 1.063717 CCTCTCCTCTCCTCTGCTTCT 60.064 57.143 0.00 0.00 0.00 2.85
1348 1420 1.357420 TCTCCTCTCCTCTGCTTCTGT 59.643 52.381 0.00 0.00 0.00 3.41
1370 1442 1.152652 TCCCGCCTCTGGATCTCTC 60.153 63.158 0.00 0.00 0.00 3.20
1371 1443 2.206536 CCCGCCTCTGGATCTCTCC 61.207 68.421 0.00 0.00 42.45 3.71
1372 1444 1.152567 CCGCCTCTGGATCTCTCCT 60.153 63.158 0.00 0.00 42.59 3.69
1373 1445 1.462731 CCGCCTCTGGATCTCTCCTG 61.463 65.000 0.00 0.00 42.59 3.86
1374 1446 0.754957 CGCCTCTGGATCTCTCCTGT 60.755 60.000 0.00 0.00 42.59 4.00
1375 1447 0.752054 GCCTCTGGATCTCTCCTGTG 59.248 60.000 0.00 0.00 42.59 3.66
1376 1448 1.412079 CCTCTGGATCTCTCCTGTGG 58.588 60.000 0.00 5.57 43.42 4.17
1377 1449 1.412079 CTCTGGATCTCTCCTGTGGG 58.588 60.000 0.00 0.00 42.59 4.61
1378 1450 0.031716 TCTGGATCTCTCCTGTGGGG 60.032 60.000 0.00 0.00 42.59 4.96
1379 1451 1.003442 TGGATCTCTCCTGTGGGGG 59.997 63.158 0.00 0.00 42.59 5.40
1380 1452 1.314867 GGATCTCTCCTGTGGGGGA 59.685 63.158 0.00 0.00 40.37 4.81
1381 1453 0.326618 GGATCTCTCCTGTGGGGGAA 60.327 60.000 0.00 0.00 42.36 3.97
1382 1454 1.584724 GATCTCTCCTGTGGGGGAAA 58.415 55.000 0.00 0.00 42.36 3.13
1383 1455 1.916181 GATCTCTCCTGTGGGGGAAAA 59.084 52.381 0.00 0.00 42.36 2.29
1564 1646 2.124695 GGCCAAGGGGATCGACAC 60.125 66.667 0.00 0.00 35.59 3.67
1614 1696 0.179026 CATGAGAGGTGCCCATCCTG 60.179 60.000 0.00 0.00 35.20 3.86
1615 1697 0.326904 ATGAGAGGTGCCCATCCTGA 60.327 55.000 0.00 0.00 35.20 3.86
1616 1698 0.547471 TGAGAGGTGCCCATCCTGAA 60.547 55.000 0.00 0.00 35.20 3.02
1627 1709 0.393537 CATCCTGAACCTGCTCCACC 60.394 60.000 0.00 0.00 0.00 4.61
1645 1727 4.122776 CCACCATTCATCTCTCGGTTTAG 58.877 47.826 0.00 0.00 0.00 1.85
1658 1740 4.003648 CTCGGTTTAGTTCCAATTGCTCT 58.996 43.478 0.00 0.55 0.00 4.09
1667 1749 3.204306 TCCAATTGCTCTATGGCTCTG 57.796 47.619 0.00 0.00 34.13 3.35
1669 1751 2.877168 CCAATTGCTCTATGGCTCTGTC 59.123 50.000 0.00 0.00 0.00 3.51
1880 1962 7.807977 AGTTCAGCTAACTTGATTTCTGAAA 57.192 32.000 5.15 5.15 46.61 2.69
1955 2038 2.552599 TTGCATTCCGGTGAGTGTTA 57.447 45.000 0.00 0.00 31.28 2.41
1996 2079 1.350684 TGCTGTACCATGGCTTTCTCA 59.649 47.619 13.04 0.01 0.00 3.27
2038 2141 3.972133 TGCTCATTCTGGTTCCATTGAT 58.028 40.909 0.00 0.00 0.00 2.57
2039 2142 4.346730 TGCTCATTCTGGTTCCATTGATT 58.653 39.130 0.00 0.00 0.00 2.57
2040 2143 5.508567 TGCTCATTCTGGTTCCATTGATTA 58.491 37.500 0.00 0.00 0.00 1.75
2041 2144 6.131264 TGCTCATTCTGGTTCCATTGATTAT 58.869 36.000 0.00 0.00 0.00 1.28
2042 2145 6.608405 TGCTCATTCTGGTTCCATTGATTATT 59.392 34.615 0.00 0.00 0.00 1.40
2043 2146 6.921857 GCTCATTCTGGTTCCATTGATTATTG 59.078 38.462 0.00 0.00 0.00 1.90
2044 2147 7.417116 GCTCATTCTGGTTCCATTGATTATTGT 60.417 37.037 0.00 0.00 0.00 2.71
2045 2148 7.999679 TCATTCTGGTTCCATTGATTATTGTC 58.000 34.615 0.00 0.00 0.00 3.18
2046 2149 7.835682 TCATTCTGGTTCCATTGATTATTGTCT 59.164 33.333 0.00 0.00 0.00 3.41
2047 2150 7.395190 TTCTGGTTCCATTGATTATTGTCTG 57.605 36.000 0.00 0.00 0.00 3.51
2048 2151 6.484288 TCTGGTTCCATTGATTATTGTCTGT 58.516 36.000 0.00 0.00 0.00 3.41
2049 2152 6.947733 TCTGGTTCCATTGATTATTGTCTGTT 59.052 34.615 0.00 0.00 0.00 3.16
2050 2153 7.121168 TCTGGTTCCATTGATTATTGTCTGTTC 59.879 37.037 0.00 0.00 0.00 3.18
2051 2154 6.718912 TGGTTCCATTGATTATTGTCTGTTCA 59.281 34.615 0.00 0.00 0.00 3.18
2052 2155 7.094248 TGGTTCCATTGATTATTGTCTGTTCAG 60.094 37.037 0.00 0.00 0.00 3.02
2053 2156 6.441093 TCCATTGATTATTGTCTGTTCAGC 57.559 37.500 0.00 0.00 0.00 4.26
2054 2157 6.182627 TCCATTGATTATTGTCTGTTCAGCT 58.817 36.000 0.00 0.00 0.00 4.24
2055 2158 6.660521 TCCATTGATTATTGTCTGTTCAGCTT 59.339 34.615 0.00 0.00 0.00 3.74
2056 2159 6.750501 CCATTGATTATTGTCTGTTCAGCTTG 59.249 38.462 0.00 0.00 0.00 4.01
2057 2160 7.362315 CCATTGATTATTGTCTGTTCAGCTTGA 60.362 37.037 0.00 0.00 0.00 3.02
2058 2161 7.692460 TTGATTATTGTCTGTTCAGCTTGAT 57.308 32.000 0.00 0.00 0.00 2.57
2081 2184 9.431887 TGATAGTTAGTTGTGGAGTTGATTTAC 57.568 33.333 0.00 0.00 0.00 2.01
2101 2204 1.701847 CCCATATTAGCAGAGCAGGGT 59.298 52.381 0.00 0.00 0.00 4.34
2223 2326 5.694995 ACTGATCTATTTTATGGGTGGGTG 58.305 41.667 0.00 0.00 0.00 4.61
2224 2327 5.060427 TGATCTATTTTATGGGTGGGTGG 57.940 43.478 0.00 0.00 0.00 4.61
2272 2378 0.388659 TGCATGGCCAAAACTGTGTC 59.611 50.000 10.96 0.00 0.00 3.67
2349 2473 8.863086 ACTAATTTGGATGGTGAATAATCATGG 58.137 33.333 0.00 0.00 38.01 3.66
2575 2699 2.414161 GCCTCAGCGTGTTTAAATGGAC 60.414 50.000 0.00 0.00 0.00 4.02
2602 2726 4.214332 GGTTTATTATGGTAGCTGCTGAGC 59.786 45.833 13.43 0.00 46.64 4.26
2685 2809 8.544622 TGTGGTTGTCCATCTCTGTAATTATTA 58.455 33.333 0.00 0.00 46.20 0.98
2688 2812 9.391006 GGTTGTCCATCTCTGTAATTATTACAA 57.609 33.333 17.10 5.09 44.80 2.41
2753 2877 2.546899 TCCAGTGGCCAAGTACACTAT 58.453 47.619 7.24 0.00 45.52 2.12
2785 2909 4.742438 TTCGAAATTCACCTAACTGTGC 57.258 40.909 0.00 0.00 36.17 4.57
2798 2922 4.889409 CCTAACTGTGCAATATCCCAACAT 59.111 41.667 0.00 0.00 0.00 2.71
2908 3033 5.071788 TCTGAAAATTAGTCTCACCACTGGT 59.928 40.000 0.00 0.00 35.62 4.00
2970 3095 8.514594 AGTTGTTTTGGGATATTATGCATATCG 58.485 33.333 7.36 0.00 43.56 2.92
3005 3130 6.466097 GCACAGTTATTTTAGCGACTTGATTC 59.534 38.462 0.00 0.00 0.00 2.52
3009 3134 8.660373 CAGTTATTTTAGCGACTTGATTCTCTT 58.340 33.333 0.00 0.00 0.00 2.85
3050 3176 6.779860 TGTTCTTCTAGGCAGTTTTAATCCT 58.220 36.000 0.00 0.00 0.00 3.24
3061 3187 5.064071 GCAGTTTTAATCCTGTACTGAGCTC 59.936 44.000 6.82 6.82 38.74 4.09
3160 3286 8.872845 CAGTTTTGTAGTTGAATGCTTTTCTTT 58.127 29.630 2.42 0.00 0.00 2.52
3196 3322 7.393234 CCTCAATTATTGTCCTCCAGTTTGTAA 59.607 37.037 4.77 0.00 0.00 2.41
3199 3325 8.739039 CAATTATTGTCCTCCAGTTTGTAATCA 58.261 33.333 0.00 0.00 0.00 2.57
3206 3332 7.069331 TGTCCTCCAGTTTGTAATCATTTTTGT 59.931 33.333 0.00 0.00 0.00 2.83
3257 3383 9.206870 ACTTGCCTTTTGTGATTTAACAATATG 57.793 29.630 0.00 0.00 39.68 1.78
3306 3432 2.893489 GTTTGACTTCTGGGGCTTCATT 59.107 45.455 0.00 0.00 0.00 2.57
3354 3480 0.107703 GATTCCGCTGGTCCATGACA 60.108 55.000 0.00 0.00 33.68 3.58
3375 3501 5.479306 ACACAGATTCTATTGCAAGTACGT 58.521 37.500 4.94 0.00 0.00 3.57
3376 3502 5.348724 ACACAGATTCTATTGCAAGTACGTG 59.651 40.000 4.94 4.24 0.00 4.49
3377 3503 4.330074 ACAGATTCTATTGCAAGTACGTGC 59.670 41.667 24.50 24.50 45.15 5.34
3424 3550 5.841957 AATGCCTTGAGAATTATCACCAC 57.158 39.130 1.37 0.00 0.00 4.16
3429 3555 3.819564 TGAGAATTATCACCACCCTCG 57.180 47.619 0.00 0.00 0.00 4.63
3440 3566 0.035056 CCACCCTCGCATCTTTCCTT 60.035 55.000 0.00 0.00 0.00 3.36
3441 3567 1.209504 CCACCCTCGCATCTTTCCTTA 59.790 52.381 0.00 0.00 0.00 2.69
3455 3583 8.929746 GCATCTTTCCTTATTTCCTTTTTCTTG 58.070 33.333 0.00 0.00 0.00 3.02
3486 3614 4.284485 CTGTGGCTAACGGTTTGTTTTAC 58.716 43.478 0.00 0.00 42.09 2.01
3489 3617 4.736307 GTGGCTAACGGTTTGTTTTACTTG 59.264 41.667 0.00 0.00 42.09 3.16
3550 3678 0.096802 TATGTTGCTTCACATGCGCG 59.903 50.000 0.00 0.00 37.93 6.86
3555 3683 2.862436 CTTCACATGCGCGCTTCA 59.138 55.556 33.29 13.19 0.00 3.02
3562 3690 2.703798 ATGCGCGCTTCAATGCCTT 61.704 52.632 33.29 0.93 0.00 4.35
3620 3750 8.263950 CAATAGTTTGAATGCATCTTTTATGCG 58.736 33.333 0.00 0.00 40.27 4.73
3631 3761 7.912949 GCATCTTTTATGCGTATCAATGAAA 57.087 32.000 0.00 0.00 35.17 2.69
3632 3762 7.767860 GCATCTTTTATGCGTATCAATGAAAC 58.232 34.615 0.00 0.00 35.17 2.78
3633 3763 7.645340 GCATCTTTTATGCGTATCAATGAAACT 59.355 33.333 0.00 0.00 35.17 2.66
3634 3764 8.950961 CATCTTTTATGCGTATCAATGAAACTG 58.049 33.333 0.00 0.00 0.00 3.16
3635 3765 6.966632 TCTTTTATGCGTATCAATGAAACTGC 59.033 34.615 0.00 0.00 0.00 4.40
3636 3766 3.698029 ATGCGTATCAATGAAACTGCC 57.302 42.857 0.00 0.00 0.00 4.85
3637 3767 2.710377 TGCGTATCAATGAAACTGCCT 58.290 42.857 0.00 0.00 0.00 4.75
3638 3768 3.867857 TGCGTATCAATGAAACTGCCTA 58.132 40.909 0.00 0.00 0.00 3.93
3639 3769 4.450976 TGCGTATCAATGAAACTGCCTAT 58.549 39.130 0.00 0.00 0.00 2.57
3640 3770 4.881273 TGCGTATCAATGAAACTGCCTATT 59.119 37.500 0.00 0.00 0.00 1.73
3641 3771 5.356751 TGCGTATCAATGAAACTGCCTATTT 59.643 36.000 0.00 0.00 0.00 1.40
3642 3772 6.540551 TGCGTATCAATGAAACTGCCTATTTA 59.459 34.615 0.00 0.00 0.00 1.40
3643 3773 7.066404 TGCGTATCAATGAAACTGCCTATTTAA 59.934 33.333 0.00 0.00 0.00 1.52
3644 3774 8.076178 GCGTATCAATGAAACTGCCTATTTAAT 58.924 33.333 0.00 0.00 0.00 1.40
3645 3775 9.950680 CGTATCAATGAAACTGCCTATTTAATT 57.049 29.630 0.00 0.00 0.00 1.40
3682 3813 3.560239 GCTCTGGGTTTAGCTCCTTTCTT 60.560 47.826 0.00 0.00 35.80 2.52
3813 3948 2.472695 AGAGCCGTTGCACATTTCTA 57.527 45.000 0.00 0.00 41.13 2.10
3815 3950 2.484264 AGAGCCGTTGCACATTTCTAAC 59.516 45.455 0.00 0.00 41.13 2.34
3837 3972 6.271585 ACCATGGAGATAATCAAATGGTCT 57.728 37.500 21.47 0.00 46.37 3.85
3927 4062 6.638468 CGGGCTTTATGATTTTGATCTTAAGC 59.362 38.462 0.00 0.00 0.00 3.09
3985 4121 9.796120 CATAGGTATTAGCTATAGTTTCTGCTC 57.204 37.037 13.57 0.00 36.84 4.26
4001 4137 1.339631 TGCTCGATCCATCCCGTTTTT 60.340 47.619 0.00 0.00 0.00 1.94
4007 4143 3.181469 CGATCCATCCCGTTTTTCCTAGA 60.181 47.826 0.00 0.00 0.00 2.43
4036 4172 4.135747 GCTCCAGCTTTTCATCTAGAGT 57.864 45.455 0.00 0.00 38.21 3.24
4040 4176 4.081420 TCCAGCTTTTCATCTAGAGTCCAC 60.081 45.833 0.00 0.00 0.00 4.02
4069 4205 5.719085 TGGATAAATGCGGGGCAAATATTAT 59.281 36.000 0.00 0.00 43.62 1.28
4182 4318 3.452264 CCCTGATGAGTCATGTTACTCCA 59.548 47.826 11.20 0.00 44.40 3.86
4662 4799 5.948758 TGTTATTAACATGAATGCCACCTCA 59.051 36.000 5.14 0.00 36.25 3.86
4666 4803 3.880047 ACATGAATGCCACCTCATTTG 57.120 42.857 0.00 0.00 36.85 2.32
4681 4818 7.761249 CCACCTCATTTGAAATAAAATCAGGAC 59.239 37.037 6.59 0.00 39.46 3.85
4874 5011 7.440556 AGCTATCAGTAGTCATATGCAAAAGTG 59.559 37.037 0.00 0.00 0.00 3.16
5012 5153 7.824289 TGATCCAGAACCAAAATCTTGTAGTAG 59.176 37.037 0.00 0.00 0.00 2.57
5204 5346 9.627123 TTACAAGATTACATATTCTTCTTGGGG 57.373 33.333 13.63 0.00 44.71 4.96
5345 5487 6.630444 ATCATGTTATCATTCAGAACAGCC 57.370 37.500 0.00 0.00 36.57 4.85
5386 5528 7.948034 ATACTGAAATAATTCGGACCCAAAA 57.052 32.000 6.36 0.00 43.43 2.44
5588 5734 6.811954 ACGAAAACATTTCCCATTGTTTAGT 58.188 32.000 1.88 3.53 43.33 2.24
5688 5835 7.017155 ACCAAGGATATGTGGCATACTACATTA 59.983 37.037 0.00 0.00 38.58 1.90
5773 5920 5.163152 GGGTCAGATAAATGAGGATGGAGTT 60.163 44.000 0.00 0.00 0.00 3.01
5912 6060 3.332485 ACTTGGTAAGGTTCCCTTGCATA 59.668 43.478 12.23 0.00 45.80 3.14
5913 6061 4.017499 ACTTGGTAAGGTTCCCTTGCATAT 60.017 41.667 12.23 0.00 45.80 1.78
5968 6116 2.625737 CAGACTTAGGCACACAGATGG 58.374 52.381 0.00 0.00 0.00 3.51
6039 6191 9.383519 CATCAGTGTCCAAGTAACAGTAATTAT 57.616 33.333 0.00 0.00 0.00 1.28
6191 6344 3.517296 TGGCATTTAAGACCCTGTTCA 57.483 42.857 0.00 0.00 0.00 3.18
6245 6398 2.093106 TGTAGAGGAAACGAGGAGCTC 58.907 52.381 4.71 4.71 0.00 4.09
6275 6428 3.009033 AGCCACTACCTGAAATTGTGCTA 59.991 43.478 0.00 0.00 0.00 3.49
6322 6475 7.996526 CACAGTTGTGGAGCAAAGAGGATCT 62.997 48.000 4.34 0.00 45.16 2.75
6376 6529 9.453325 GATGTAGTCTGTGCTAGTAACTAAATC 57.547 37.037 5.90 5.90 0.00 2.17
6395 6548 2.497138 TCATGAGTGTCAACAGCAAGG 58.503 47.619 0.00 0.00 0.00 3.61
6546 6699 3.091545 TGCTGCAGCTAGGCTTTTAATT 58.908 40.909 36.61 0.00 42.66 1.40
6663 6816 5.689383 ACAAATGCACTGACGACTTAATT 57.311 34.783 4.68 0.00 0.00 1.40
6664 6817 5.451908 ACAAATGCACTGACGACTTAATTG 58.548 37.500 4.68 0.00 0.00 2.32
6755 6908 5.105877 TGGAGGTTTTCTACAGAGACATACG 60.106 44.000 0.00 0.00 31.40 3.06
6756 6909 5.326200 AGGTTTTCTACAGAGACATACGG 57.674 43.478 0.00 0.00 0.00 4.02
6759 6912 5.336213 GGTTTTCTACAGAGACATACGGACA 60.336 44.000 0.00 0.00 0.00 4.02
6760 6913 5.970317 TTTCTACAGAGACATACGGACAA 57.030 39.130 0.00 0.00 0.00 3.18
6824 6977 4.919754 GGTTGAATGCTTGATTGACTGAAC 59.080 41.667 0.00 0.00 0.00 3.18
6847 7000 3.009033 GGCCACCTGGATTGCAGTATATA 59.991 47.826 0.00 0.00 37.39 0.86
6848 7001 4.324563 GGCCACCTGGATTGCAGTATATAT 60.325 45.833 0.00 0.00 37.39 0.86
6849 7002 5.104527 GGCCACCTGGATTGCAGTATATATA 60.105 44.000 0.00 0.00 37.39 0.86
6850 7003 6.409695 GGCCACCTGGATTGCAGTATATATAT 60.410 42.308 0.00 0.00 37.39 0.86
6851 7004 6.708054 GCCACCTGGATTGCAGTATATATATC 59.292 42.308 0.00 0.00 37.39 1.63
6852 7005 7.635750 GCCACCTGGATTGCAGTATATATATCA 60.636 40.741 0.00 0.00 37.39 2.15
6853 7006 8.435187 CCACCTGGATTGCAGTATATATATCAT 58.565 37.037 0.00 0.00 37.39 2.45
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 2.159324 GGAACAAATAAGCTGCTGAGGC 60.159 50.000 1.35 0.00 39.26 4.70
5 6 3.350833 AGGAACAAATAAGCTGCTGAGG 58.649 45.455 1.35 0.00 0.00 3.86
6 7 4.260170 AGAGGAACAAATAAGCTGCTGAG 58.740 43.478 1.35 0.00 0.00 3.35
7 8 4.292186 AGAGGAACAAATAAGCTGCTGA 57.708 40.909 1.35 0.00 0.00 4.26
8 9 5.645497 AGTTAGAGGAACAAATAAGCTGCTG 59.355 40.000 1.35 0.00 40.86 4.41
9 10 5.810095 AGTTAGAGGAACAAATAAGCTGCT 58.190 37.500 0.00 0.00 40.86 4.24
10 11 7.793927 ATAGTTAGAGGAACAAATAAGCTGC 57.206 36.000 0.00 0.00 40.86 5.25
35 36 8.772705 GCAACAAAACATCATGGAAAGAATTAA 58.227 29.630 0.00 0.00 0.00 1.40
36 37 7.930325 TGCAACAAAACATCATGGAAAGAATTA 59.070 29.630 0.00 0.00 0.00 1.40
37 38 6.766944 TGCAACAAAACATCATGGAAAGAATT 59.233 30.769 0.00 0.00 0.00 2.17
38 39 6.289834 TGCAACAAAACATCATGGAAAGAAT 58.710 32.000 0.00 0.00 0.00 2.40
39 40 5.668471 TGCAACAAAACATCATGGAAAGAA 58.332 33.333 0.00 0.00 0.00 2.52
40 41 5.273674 TGCAACAAAACATCATGGAAAGA 57.726 34.783 0.00 0.00 0.00 2.52
41 42 5.467399 ACATGCAACAAAACATCATGGAAAG 59.533 36.000 0.00 0.00 38.92 2.62
42 43 5.366460 ACATGCAACAAAACATCATGGAAA 58.634 33.333 0.00 0.00 38.92 3.13
43 44 4.958509 ACATGCAACAAAACATCATGGAA 58.041 34.783 0.00 0.00 38.92 3.53
44 45 4.281435 AGACATGCAACAAAACATCATGGA 59.719 37.500 0.00 0.00 38.92 3.41
45 46 4.562082 AGACATGCAACAAAACATCATGG 58.438 39.130 0.00 0.00 38.92 3.66
46 47 5.692654 TCAAGACATGCAACAAAACATCATG 59.307 36.000 0.00 0.00 40.07 3.07
47 48 5.845103 TCAAGACATGCAACAAAACATCAT 58.155 33.333 0.00 0.00 0.00 2.45
48 49 5.067544 TCTCAAGACATGCAACAAAACATCA 59.932 36.000 0.00 0.00 0.00 3.07
49 50 5.522456 TCTCAAGACATGCAACAAAACATC 58.478 37.500 0.00 0.00 0.00 3.06
50 51 5.518848 TCTCAAGACATGCAACAAAACAT 57.481 34.783 0.00 0.00 0.00 2.71
51 52 4.734402 GCTCTCAAGACATGCAACAAAACA 60.734 41.667 0.00 0.00 0.00 2.83
52 53 3.732721 GCTCTCAAGACATGCAACAAAAC 59.267 43.478 0.00 0.00 0.00 2.43
53 54 3.548616 CGCTCTCAAGACATGCAACAAAA 60.549 43.478 0.00 0.00 0.00 2.44
54 55 2.031769 CGCTCTCAAGACATGCAACAAA 60.032 45.455 0.00 0.00 0.00 2.83
55 56 1.532437 CGCTCTCAAGACATGCAACAA 59.468 47.619 0.00 0.00 0.00 2.83
56 57 1.150827 CGCTCTCAAGACATGCAACA 58.849 50.000 0.00 0.00 0.00 3.33
57 58 0.179205 GCGCTCTCAAGACATGCAAC 60.179 55.000 0.00 0.00 0.00 4.17
58 59 1.300971 GGCGCTCTCAAGACATGCAA 61.301 55.000 7.64 0.00 0.00 4.08
59 60 1.742880 GGCGCTCTCAAGACATGCA 60.743 57.895 7.64 0.00 0.00 3.96
60 61 1.094073 ATGGCGCTCTCAAGACATGC 61.094 55.000 7.64 0.00 0.00 4.06
61 62 0.656259 CATGGCGCTCTCAAGACATG 59.344 55.000 7.64 5.96 0.00 3.21
62 63 0.463295 CCATGGCGCTCTCAAGACAT 60.463 55.000 7.64 0.00 0.00 3.06
63 64 1.078918 CCATGGCGCTCTCAAGACA 60.079 57.895 7.64 0.00 0.00 3.41
64 65 1.078848 ACCATGGCGCTCTCAAGAC 60.079 57.895 13.04 0.00 0.00 3.01
65 66 1.219124 GACCATGGCGCTCTCAAGA 59.781 57.895 13.04 0.00 0.00 3.02
66 67 2.169789 CGACCATGGCGCTCTCAAG 61.170 63.158 13.04 0.00 0.00 3.02
67 68 2.125552 CGACCATGGCGCTCTCAA 60.126 61.111 13.04 0.00 0.00 3.02
92 93 3.576118 AGAGTACCATGGCTAGCACATAG 59.424 47.826 18.24 12.62 34.31 2.23
93 94 3.574396 GAGAGTACCATGGCTAGCACATA 59.426 47.826 18.24 0.00 0.00 2.29
94 95 2.366916 GAGAGTACCATGGCTAGCACAT 59.633 50.000 18.24 14.32 0.00 3.21
95 96 1.757118 GAGAGTACCATGGCTAGCACA 59.243 52.381 18.24 12.55 0.00 4.57
96 97 2.035632 AGAGAGTACCATGGCTAGCAC 58.964 52.381 18.24 4.68 0.00 4.40
97 98 2.461300 AGAGAGTACCATGGCTAGCA 57.539 50.000 18.24 2.97 0.00 3.49
98 99 2.036604 GGAAGAGAGTACCATGGCTAGC 59.963 54.545 13.04 6.04 0.00 3.42
99 100 3.571590 AGGAAGAGAGTACCATGGCTAG 58.428 50.000 13.04 0.00 0.00 3.42
100 101 3.689872 AGGAAGAGAGTACCATGGCTA 57.310 47.619 13.04 0.35 0.00 3.93
101 102 2.559381 AGGAAGAGAGTACCATGGCT 57.441 50.000 13.04 0.55 0.00 4.75
102 103 4.559704 CGAATAGGAAGAGAGTACCATGGC 60.560 50.000 13.04 0.00 0.00 4.40
103 104 4.827835 TCGAATAGGAAGAGAGTACCATGG 59.172 45.833 11.19 11.19 0.00 3.66
104 105 6.582677 ATCGAATAGGAAGAGAGTACCATG 57.417 41.667 0.00 0.00 0.00 3.66
105 106 5.413213 CGATCGAATAGGAAGAGAGTACCAT 59.587 44.000 10.26 0.00 0.00 3.55
106 107 4.755629 CGATCGAATAGGAAGAGAGTACCA 59.244 45.833 10.26 0.00 0.00 3.25
107 108 4.378666 GCGATCGAATAGGAAGAGAGTACC 60.379 50.000 21.57 0.00 0.00 3.34
108 109 4.453136 AGCGATCGAATAGGAAGAGAGTAC 59.547 45.833 21.57 0.00 0.00 2.73
109 110 4.643463 AGCGATCGAATAGGAAGAGAGTA 58.357 43.478 21.57 0.00 0.00 2.59
110 111 3.482436 AGCGATCGAATAGGAAGAGAGT 58.518 45.455 21.57 0.00 0.00 3.24
111 112 4.497473 AAGCGATCGAATAGGAAGAGAG 57.503 45.455 21.57 0.00 0.00 3.20
112 113 4.920640 AAAGCGATCGAATAGGAAGAGA 57.079 40.909 21.57 0.00 0.00 3.10
113 114 4.446051 GGAAAAGCGATCGAATAGGAAGAG 59.554 45.833 21.57 0.00 0.00 2.85
114 115 4.099573 AGGAAAAGCGATCGAATAGGAAGA 59.900 41.667 21.57 0.00 0.00 2.87
115 116 4.372656 AGGAAAAGCGATCGAATAGGAAG 58.627 43.478 21.57 0.00 0.00 3.46
116 117 4.099573 AGAGGAAAAGCGATCGAATAGGAA 59.900 41.667 21.57 0.00 0.00 3.36
117 118 3.637229 AGAGGAAAAGCGATCGAATAGGA 59.363 43.478 21.57 0.00 0.00 2.94
118 119 3.738282 CAGAGGAAAAGCGATCGAATAGG 59.262 47.826 21.57 0.00 0.00 2.57
119 120 3.183373 GCAGAGGAAAAGCGATCGAATAG 59.817 47.826 21.57 0.00 0.00 1.73
120 121 3.123804 GCAGAGGAAAAGCGATCGAATA 58.876 45.455 21.57 0.00 0.00 1.75
121 122 1.936547 GCAGAGGAAAAGCGATCGAAT 59.063 47.619 21.57 2.87 0.00 3.34
122 123 1.066858 AGCAGAGGAAAAGCGATCGAA 60.067 47.619 21.57 0.00 0.00 3.71
123 124 0.532573 AGCAGAGGAAAAGCGATCGA 59.467 50.000 21.57 0.00 0.00 3.59
124 125 0.926846 GAGCAGAGGAAAAGCGATCG 59.073 55.000 11.69 11.69 0.00 3.69
125 126 1.294857 GGAGCAGAGGAAAAGCGATC 58.705 55.000 0.00 0.00 0.00 3.69
126 127 0.107459 GGGAGCAGAGGAAAAGCGAT 60.107 55.000 0.00 0.00 0.00 4.58
127 128 1.296715 GGGAGCAGAGGAAAAGCGA 59.703 57.895 0.00 0.00 0.00 4.93
128 129 1.746991 GGGGAGCAGAGGAAAAGCG 60.747 63.158 0.00 0.00 0.00 4.68
129 130 1.379176 GGGGGAGCAGAGGAAAAGC 60.379 63.158 0.00 0.00 0.00 3.51
150 151 3.010144 CCTCCTTCCATGTGGGGG 58.990 66.667 0.00 1.78 37.68 5.40
151 152 2.276740 GCCTCCTTCCATGTGGGG 59.723 66.667 0.00 0.00 37.22 4.96
152 153 2.276740 GGCCTCCTTCCATGTGGG 59.723 66.667 0.00 0.00 35.41 4.61
153 154 2.276740 GGGCCTCCTTCCATGTGG 59.723 66.667 0.84 0.00 0.00 4.17
154 155 1.941403 ATGGGGCCTCCTTCCATGTG 61.941 60.000 9.46 0.00 39.56 3.21
155 156 0.328450 TATGGGGCCTCCTTCCATGT 60.328 55.000 17.94 0.00 41.00 3.21
156 157 0.852842 TTATGGGGCCTCCTTCCATG 59.147 55.000 17.94 0.00 41.00 3.66
157 158 0.853530 GTTATGGGGCCTCCTTCCAT 59.146 55.000 14.09 14.09 43.08 3.41
158 159 0.253630 AGTTATGGGGCCTCCTTCCA 60.254 55.000 0.00 0.00 36.20 3.53
159 160 0.927029 AAGTTATGGGGCCTCCTTCC 59.073 55.000 0.00 0.00 36.20 3.46
160 161 1.285078 ACAAGTTATGGGGCCTCCTTC 59.715 52.381 0.00 0.00 36.20 3.46
161 162 1.382914 ACAAGTTATGGGGCCTCCTT 58.617 50.000 0.00 1.73 36.20 3.36
162 163 1.285078 GAACAAGTTATGGGGCCTCCT 59.715 52.381 0.00 0.00 36.20 3.69
163 164 1.685180 GGAACAAGTTATGGGGCCTCC 60.685 57.143 0.00 0.72 0.00 4.30
164 165 1.685180 GGGAACAAGTTATGGGGCCTC 60.685 57.143 0.84 0.00 0.00 4.70
165 166 0.335019 GGGAACAAGTTATGGGGCCT 59.665 55.000 0.84 0.00 0.00 5.19
166 167 0.040499 TGGGAACAAGTTATGGGGCC 59.960 55.000 0.00 0.00 37.44 5.80
167 168 3.681909 TGGGAACAAGTTATGGGGC 57.318 52.632 0.00 0.00 37.44 5.80
177 178 3.702284 CGCCACCGACTATGGGAACAA 62.702 57.143 0.00 0.00 39.91 2.83
178 179 2.233605 CGCCACCGACTATGGGAACA 62.234 60.000 0.00 0.00 40.62 3.18
179 180 1.520787 CGCCACCGACTATGGGAAC 60.521 63.158 0.00 0.00 37.73 3.62
180 181 2.897207 CGCCACCGACTATGGGAA 59.103 61.111 0.00 0.00 37.73 3.97
181 182 3.845259 GCGCCACCGACTATGGGA 61.845 66.667 0.00 0.00 37.73 4.37
182 183 3.792053 GAGCGCCACCGACTATGGG 62.792 68.421 2.29 0.00 37.73 4.00
183 184 2.279517 GAGCGCCACCGACTATGG 60.280 66.667 2.29 0.00 40.50 2.74
184 185 2.655364 CGAGCGCCACCGACTATG 60.655 66.667 2.29 0.00 36.29 2.23
185 186 2.827190 TCGAGCGCCACCGACTAT 60.827 61.111 2.29 0.00 36.29 2.12
186 187 3.506096 CTCGAGCGCCACCGACTA 61.506 66.667 2.29 0.00 36.29 2.59
196 197 3.610791 TTGAGCACCGACTCGAGCG 62.611 63.158 13.61 16.54 39.68 5.03
197 198 2.089349 GTTGAGCACCGACTCGAGC 61.089 63.158 13.61 4.47 39.68 5.03
198 199 0.730834 CTGTTGAGCACCGACTCGAG 60.731 60.000 11.84 11.84 39.68 4.04
199 200 1.285950 CTGTTGAGCACCGACTCGA 59.714 57.895 0.00 0.00 39.68 4.04
200 201 1.007271 ACTGTTGAGCACCGACTCG 60.007 57.895 0.00 0.00 39.68 4.18
201 202 0.946221 CCACTGTTGAGCACCGACTC 60.946 60.000 0.00 0.00 37.19 3.36
202 203 1.069765 CCACTGTTGAGCACCGACT 59.930 57.895 0.00 0.00 0.00 4.18
203 204 1.961277 CCCACTGTTGAGCACCGAC 60.961 63.158 0.00 0.00 0.00 4.79
204 205 2.425592 CCCACTGTTGAGCACCGA 59.574 61.111 0.00 0.00 0.00 4.69
205 206 2.669569 CCCCACTGTTGAGCACCG 60.670 66.667 0.00 0.00 0.00 4.94
206 207 2.985847 GCCCCACTGTTGAGCACC 60.986 66.667 0.00 0.00 0.00 5.01
207 208 1.968540 GAGCCCCACTGTTGAGCAC 60.969 63.158 0.00 0.00 0.00 4.40
208 209 2.149383 AGAGCCCCACTGTTGAGCA 61.149 57.895 0.00 0.00 0.00 4.26
209 210 1.673665 CAGAGCCCCACTGTTGAGC 60.674 63.158 0.00 0.00 0.00 4.26
210 211 0.617413 ATCAGAGCCCCACTGTTGAG 59.383 55.000 0.00 0.00 36.81 3.02
211 212 0.615331 GATCAGAGCCCCACTGTTGA 59.385 55.000 0.00 0.00 36.81 3.18
212 213 0.617413 AGATCAGAGCCCCACTGTTG 59.383 55.000 0.00 0.00 36.81 3.33
213 214 0.908198 GAGATCAGAGCCCCACTGTT 59.092 55.000 0.00 0.00 36.81 3.16
214 215 0.252421 TGAGATCAGAGCCCCACTGT 60.252 55.000 0.00 0.00 36.81 3.55
215 216 0.464870 CTGAGATCAGAGCCCCACTG 59.535 60.000 3.67 0.00 46.59 3.66
216 217 0.690411 CCTGAGATCAGAGCCCCACT 60.690 60.000 11.44 0.00 46.59 4.00
217 218 0.980231 ACCTGAGATCAGAGCCCCAC 60.980 60.000 11.44 0.00 46.59 4.61
218 219 0.252881 AACCTGAGATCAGAGCCCCA 60.253 55.000 11.44 0.00 46.59 4.96
219 220 0.915364 AAACCTGAGATCAGAGCCCC 59.085 55.000 11.44 0.00 46.59 5.80
220 221 2.290577 ACAAAACCTGAGATCAGAGCCC 60.291 50.000 11.44 0.00 46.59 5.19
221 222 2.746362 CACAAAACCTGAGATCAGAGCC 59.254 50.000 11.44 0.00 46.59 4.70
222 223 3.406764 ACACAAAACCTGAGATCAGAGC 58.593 45.455 11.44 0.00 46.59 4.09
223 224 5.755813 CAAACACAAAACCTGAGATCAGAG 58.244 41.667 11.44 4.40 46.59 3.35
224 225 4.036734 GCAAACACAAAACCTGAGATCAGA 59.963 41.667 11.44 0.00 46.59 3.27
225 226 4.293415 GCAAACACAAAACCTGAGATCAG 58.707 43.478 2.72 2.72 43.40 2.90
226 227 3.243035 CGCAAACACAAAACCTGAGATCA 60.243 43.478 0.00 0.00 0.00 2.92
227 228 3.300009 CGCAAACACAAAACCTGAGATC 58.700 45.455 0.00 0.00 0.00 2.75
228 229 2.034558 CCGCAAACACAAAACCTGAGAT 59.965 45.455 0.00 0.00 0.00 2.75
229 230 1.403679 CCGCAAACACAAAACCTGAGA 59.596 47.619 0.00 0.00 0.00 3.27
230 231 1.403679 TCCGCAAACACAAAACCTGAG 59.596 47.619 0.00 0.00 0.00 3.35
231 232 1.403679 CTCCGCAAACACAAAACCTGA 59.596 47.619 0.00 0.00 0.00 3.86
232 233 1.403679 TCTCCGCAAACACAAAACCTG 59.596 47.619 0.00 0.00 0.00 4.00
233 234 1.404035 GTCTCCGCAAACACAAAACCT 59.596 47.619 0.00 0.00 0.00 3.50
234 235 1.535226 GGTCTCCGCAAACACAAAACC 60.535 52.381 0.00 0.00 0.00 3.27
235 236 1.133407 TGGTCTCCGCAAACACAAAAC 59.867 47.619 0.00 0.00 0.00 2.43
236 237 1.464734 TGGTCTCCGCAAACACAAAA 58.535 45.000 0.00 0.00 0.00 2.44
237 238 1.464734 TTGGTCTCCGCAAACACAAA 58.535 45.000 0.00 0.00 0.00 2.83
238 239 1.133407 GTTTGGTCTCCGCAAACACAA 59.867 47.619 9.74 0.00 38.33 3.33
239 240 0.736053 GTTTGGTCTCCGCAAACACA 59.264 50.000 9.74 0.00 38.33 3.72
240 241 0.736053 TGTTTGGTCTCCGCAAACAC 59.264 50.000 12.38 0.00 41.88 3.32
241 242 1.021202 CTGTTTGGTCTCCGCAAACA 58.979 50.000 14.70 14.70 43.70 2.83
242 243 0.310854 CCTGTTTGGTCTCCGCAAAC 59.689 55.000 0.00 0.00 38.76 2.93
243 244 2.714259 CCTGTTTGGTCTCCGCAAA 58.286 52.632 0.00 0.00 0.00 3.68
244 245 4.473643 CCTGTTTGGTCTCCGCAA 57.526 55.556 0.00 0.00 0.00 4.85
253 254 0.944386 CACCGACTTCACCTGTTTGG 59.056 55.000 0.00 0.00 42.93 3.28
254 255 0.307760 GCACCGACTTCACCTGTTTG 59.692 55.000 0.00 0.00 0.00 2.93
255 256 0.818040 GGCACCGACTTCACCTGTTT 60.818 55.000 0.00 0.00 0.00 2.83
256 257 1.227853 GGCACCGACTTCACCTGTT 60.228 57.895 0.00 0.00 0.00 3.16
257 258 1.978455 TTGGCACCGACTTCACCTGT 61.978 55.000 0.00 0.00 0.00 4.00
258 259 1.227823 TTGGCACCGACTTCACCTG 60.228 57.895 0.00 0.00 0.00 4.00
259 260 1.071471 CTTGGCACCGACTTCACCT 59.929 57.895 0.00 0.00 0.00 4.00
260 261 1.966451 CCTTGGCACCGACTTCACC 60.966 63.158 0.00 0.00 0.00 4.02
261 262 0.951040 CTCCTTGGCACCGACTTCAC 60.951 60.000 0.00 0.00 0.00 3.18
262 263 1.118965 TCTCCTTGGCACCGACTTCA 61.119 55.000 0.00 0.00 0.00 3.02
263 264 0.390472 CTCTCCTTGGCACCGACTTC 60.390 60.000 0.00 0.00 0.00 3.01
264 265 1.674057 CTCTCCTTGGCACCGACTT 59.326 57.895 0.00 0.00 0.00 3.01
265 266 2.948720 GCTCTCCTTGGCACCGACT 61.949 63.158 0.00 0.00 0.00 4.18
266 267 2.435059 GCTCTCCTTGGCACCGAC 60.435 66.667 0.00 0.00 0.00 4.79
267 268 4.069232 CGCTCTCCTTGGCACCGA 62.069 66.667 0.00 0.00 0.00 4.69
268 269 4.379243 ACGCTCTCCTTGGCACCG 62.379 66.667 0.00 0.00 0.00 4.94
269 270 2.743928 CACGCTCTCCTTGGCACC 60.744 66.667 0.00 0.00 0.00 5.01
270 271 2.029844 GACACGCTCTCCTTGGCAC 61.030 63.158 0.00 0.00 0.00 5.01
271 272 2.343758 GACACGCTCTCCTTGGCA 59.656 61.111 0.00 0.00 0.00 4.92
272 273 2.811317 CGACACGCTCTCCTTGGC 60.811 66.667 0.00 0.00 0.00 4.52
273 274 1.949847 ATCCGACACGCTCTCCTTGG 61.950 60.000 0.00 0.00 0.00 3.61
274 275 0.526524 GATCCGACACGCTCTCCTTG 60.527 60.000 0.00 0.00 0.00 3.61
275 276 0.681564 AGATCCGACACGCTCTCCTT 60.682 55.000 0.00 0.00 0.00 3.36
276 277 1.077357 AGATCCGACACGCTCTCCT 60.077 57.895 0.00 0.00 0.00 3.69
277 278 1.064946 CAGATCCGACACGCTCTCC 59.935 63.158 0.00 0.00 0.00 3.71
278 279 1.587613 GCAGATCCGACACGCTCTC 60.588 63.158 0.00 0.00 0.00 3.20
279 280 2.492090 GCAGATCCGACACGCTCT 59.508 61.111 0.00 0.00 0.00 4.09
280 281 2.583593 GGCAGATCCGACACGCTC 60.584 66.667 0.00 0.00 0.00 5.03
281 282 3.381983 TGGCAGATCCGACACGCT 61.382 61.111 0.00 0.00 37.80 5.07
282 283 3.188786 GTGGCAGATCCGACACGC 61.189 66.667 0.00 0.00 37.80 5.34
284 285 2.571757 TCGTGGCAGATCCGACAC 59.428 61.111 4.70 4.70 37.80 3.67
286 287 2.579787 CGTCGTGGCAGATCCGAC 60.580 66.667 15.79 15.79 45.49 4.79
287 288 3.047718 GACGTCGTGGCAGATCCGA 62.048 63.158 0.63 0.00 37.80 4.55
288 289 2.579787 GACGTCGTGGCAGATCCG 60.580 66.667 0.63 0.00 37.80 4.18
289 290 1.805945 GTGACGTCGTGGCAGATCC 60.806 63.158 11.62 0.00 0.00 3.36
290 291 1.080772 TGTGACGTCGTGGCAGATC 60.081 57.895 11.62 0.00 0.00 2.75
291 292 1.372997 GTGTGACGTCGTGGCAGAT 60.373 57.895 11.62 0.00 0.00 2.90
292 293 2.027024 GTGTGACGTCGTGGCAGA 59.973 61.111 11.62 0.00 0.00 4.26
293 294 2.279186 TGTGTGACGTCGTGGCAG 60.279 61.111 11.62 0.00 0.00 4.85
294 295 2.583868 GTGTGTGACGTCGTGGCA 60.584 61.111 11.62 4.52 0.00 4.92
295 296 2.583868 TGTGTGTGACGTCGTGGC 60.584 61.111 11.62 1.78 0.00 5.01
296 297 0.874175 ATGTGTGTGTGACGTCGTGG 60.874 55.000 11.62 0.00 0.00 4.94
297 298 0.229500 CATGTGTGTGTGACGTCGTG 59.771 55.000 11.62 0.00 0.00 4.35
298 299 0.874175 CCATGTGTGTGTGACGTCGT 60.874 55.000 11.62 0.00 0.00 4.34
299 300 1.852648 CCATGTGTGTGTGACGTCG 59.147 57.895 11.62 0.00 0.00 5.12
300 301 1.157257 TGCCATGTGTGTGTGACGTC 61.157 55.000 9.11 9.11 0.00 4.34
301 302 0.746204 TTGCCATGTGTGTGTGACGT 60.746 50.000 0.00 0.00 0.00 4.34
302 303 0.380024 TTTGCCATGTGTGTGTGACG 59.620 50.000 0.00 0.00 0.00 4.35
303 304 2.575694 TTTTGCCATGTGTGTGTGAC 57.424 45.000 0.00 0.00 0.00 3.67
304 305 3.118847 ACATTTTTGCCATGTGTGTGTGA 60.119 39.130 0.00 0.00 33.42 3.58
305 306 3.196463 ACATTTTTGCCATGTGTGTGTG 58.804 40.909 0.00 0.00 33.42 3.82
306 307 3.540314 ACATTTTTGCCATGTGTGTGT 57.460 38.095 0.00 0.00 33.42 3.72
307 308 3.546417 GCAACATTTTTGCCATGTGTGTG 60.546 43.478 0.00 0.00 39.38 3.82
308 309 2.613133 GCAACATTTTTGCCATGTGTGT 59.387 40.909 0.00 0.00 39.38 3.72
309 310 3.256285 GCAACATTTTTGCCATGTGTG 57.744 42.857 0.00 0.00 39.38 3.82
317 318 1.344114 TCTCCAGGGCAACATTTTTGC 59.656 47.619 0.00 0.00 44.22 3.68
318 319 3.967332 ATCTCCAGGGCAACATTTTTG 57.033 42.857 0.00 0.00 39.74 2.44
319 320 4.644498 CAAATCTCCAGGGCAACATTTTT 58.356 39.130 0.00 0.00 39.74 1.94
320 321 3.557686 GCAAATCTCCAGGGCAACATTTT 60.558 43.478 0.00 0.00 39.74 1.82
321 322 2.027837 GCAAATCTCCAGGGCAACATTT 60.028 45.455 0.00 0.00 39.74 2.32
322 323 1.551883 GCAAATCTCCAGGGCAACATT 59.448 47.619 0.00 0.00 39.74 2.71
323 324 1.188863 GCAAATCTCCAGGGCAACAT 58.811 50.000 0.00 0.00 39.74 2.71
324 325 1.243342 CGCAAATCTCCAGGGCAACA 61.243 55.000 0.00 0.00 39.74 3.33
325 326 0.960364 TCGCAAATCTCCAGGGCAAC 60.960 55.000 0.00 0.00 0.00 4.17
326 327 0.960364 GTCGCAAATCTCCAGGGCAA 60.960 55.000 0.00 0.00 0.00 4.52
327 328 1.377202 GTCGCAAATCTCCAGGGCA 60.377 57.895 0.00 0.00 0.00 5.36
328 329 1.078143 AGTCGCAAATCTCCAGGGC 60.078 57.895 0.00 0.00 0.00 5.19
329 330 0.539051 AGAGTCGCAAATCTCCAGGG 59.461 55.000 0.00 0.00 0.00 4.45
330 331 2.393271 AAGAGTCGCAAATCTCCAGG 57.607 50.000 0.00 0.00 0.00 4.45
331 332 4.377839 TCTAAGAGTCGCAAATCTCCAG 57.622 45.455 0.00 0.00 0.00 3.86
332 333 4.498177 CGATCTAAGAGTCGCAAATCTCCA 60.498 45.833 0.00 0.00 0.00 3.86
333 334 3.978217 CGATCTAAGAGTCGCAAATCTCC 59.022 47.826 0.00 0.00 0.00 3.71
334 335 3.978217 CCGATCTAAGAGTCGCAAATCTC 59.022 47.826 0.00 0.00 36.57 2.75
335 336 3.632604 TCCGATCTAAGAGTCGCAAATCT 59.367 43.478 0.00 0.00 36.57 2.40
336 337 3.731717 GTCCGATCTAAGAGTCGCAAATC 59.268 47.826 0.00 0.00 36.57 2.17
337 338 3.707793 GTCCGATCTAAGAGTCGCAAAT 58.292 45.455 0.00 0.00 36.57 2.32
338 339 2.477357 CGTCCGATCTAAGAGTCGCAAA 60.477 50.000 0.00 0.00 36.57 3.68
339 340 1.063616 CGTCCGATCTAAGAGTCGCAA 59.936 52.381 0.00 0.00 36.57 4.85
340 341 0.656259 CGTCCGATCTAAGAGTCGCA 59.344 55.000 0.00 0.00 36.57 5.10
341 342 0.041135 CCGTCCGATCTAAGAGTCGC 60.041 60.000 0.00 0.00 36.57 5.19
342 343 0.041135 GCCGTCCGATCTAAGAGTCG 60.041 60.000 0.00 0.00 37.58 4.18
343 344 1.002251 CAGCCGTCCGATCTAAGAGTC 60.002 57.143 0.00 0.00 0.00 3.36
344 345 1.025812 CAGCCGTCCGATCTAAGAGT 58.974 55.000 0.00 0.00 0.00 3.24
345 346 0.318275 GCAGCCGTCCGATCTAAGAG 60.318 60.000 0.00 0.00 0.00 2.85
346 347 1.734137 GCAGCCGTCCGATCTAAGA 59.266 57.895 0.00 0.00 0.00 2.10
347 348 1.658717 CGCAGCCGTCCGATCTAAG 60.659 63.158 0.00 0.00 0.00 2.18
348 349 2.411701 CGCAGCCGTCCGATCTAA 59.588 61.111 0.00 0.00 0.00 2.10
349 350 3.592814 CCGCAGCCGTCCGATCTA 61.593 66.667 0.00 0.00 0.00 1.98
351 352 4.933064 CTCCGCAGCCGTCCGATC 62.933 72.222 0.00 0.00 0.00 3.69
365 366 0.606604 TGAACTTACTGTCGGCCTCC 59.393 55.000 0.00 0.00 0.00 4.30
366 367 2.674796 ATGAACTTACTGTCGGCCTC 57.325 50.000 0.00 0.00 0.00 4.70
367 368 4.081087 ACAATATGAACTTACTGTCGGCCT 60.081 41.667 0.00 0.00 0.00 5.19
368 369 4.189231 ACAATATGAACTTACTGTCGGCC 58.811 43.478 0.00 0.00 0.00 6.13
369 370 5.796350 AACAATATGAACTTACTGTCGGC 57.204 39.130 0.00 0.00 0.00 5.54
370 371 7.234384 GTCAAACAATATGAACTTACTGTCGG 58.766 38.462 0.00 0.00 0.00 4.79
371 372 6.948228 CGTCAAACAATATGAACTTACTGTCG 59.052 38.462 0.00 0.00 0.00 4.35
372 373 6.736853 GCGTCAAACAATATGAACTTACTGTC 59.263 38.462 0.00 0.00 0.00 3.51
373 374 6.348213 GGCGTCAAACAATATGAACTTACTGT 60.348 38.462 0.00 0.00 0.00 3.55
381 382 3.067833 TGTCGGCGTCAAACAATATGAA 58.932 40.909 6.85 0.00 0.00 2.57
382 383 2.670905 CTGTCGGCGTCAAACAATATGA 59.329 45.455 6.85 0.00 0.00 2.15
385 386 0.793861 GCTGTCGGCGTCAAACAATA 59.206 50.000 6.85 0.00 0.00 1.90
457 458 6.642540 GGGCATTGCTTTTATTTATCTACAGC 59.357 38.462 8.82 0.00 0.00 4.40
458 459 7.715657 TGGGCATTGCTTTTATTTATCTACAG 58.284 34.615 8.82 0.00 0.00 2.74
460 461 8.143835 ACATGGGCATTGCTTTTATTTATCTAC 58.856 33.333 8.82 0.00 0.00 2.59
478 490 0.392461 GCTTTACTCCGACATGGGCA 60.392 55.000 0.00 0.00 38.76 5.36
482 494 1.631072 CGCGCTTTACTCCGACATG 59.369 57.895 5.56 0.00 0.00 3.21
504 526 2.545113 CCGTTATATCGAGTGGTGGTGG 60.545 54.545 4.77 0.00 0.00 4.61
505 527 2.545113 CCCGTTATATCGAGTGGTGGTG 60.545 54.545 4.77 0.00 0.00 4.17
506 528 1.684983 CCCGTTATATCGAGTGGTGGT 59.315 52.381 4.77 0.00 0.00 4.16
533 555 2.354403 CCGAGACGTAAAATGGAAGGGT 60.354 50.000 0.00 0.00 0.00 4.34
549 571 1.525765 TTTGTTGCTGCAGCCGAGA 60.526 52.632 34.64 19.40 41.18 4.04
551 573 2.721231 GTTTGTTGCTGCAGCCGA 59.279 55.556 34.64 21.08 41.18 5.54
552 574 2.355009 GGTTTGTTGCTGCAGCCG 60.355 61.111 34.64 0.75 41.18 5.52
556 585 1.519719 GGTTGGGTTTGTTGCTGCA 59.480 52.632 0.00 0.00 0.00 4.41
559 588 3.532501 CCGGTTGGGTTTGTTGCT 58.467 55.556 0.00 0.00 0.00 3.91
686 716 0.543174 GACCTGACCTGACCTGACCT 60.543 60.000 0.00 0.00 0.00 3.85
687 717 0.832135 TGACCTGACCTGACCTGACC 60.832 60.000 0.00 0.00 0.00 4.02
688 718 0.605589 CTGACCTGACCTGACCTGAC 59.394 60.000 0.00 0.00 0.00 3.51
689 719 0.542938 CCTGACCTGACCTGACCTGA 60.543 60.000 0.00 0.00 0.00 3.86
690 720 0.833834 ACCTGACCTGACCTGACCTG 60.834 60.000 0.00 0.00 0.00 4.00
691 721 0.833834 CACCTGACCTGACCTGACCT 60.834 60.000 0.00 0.00 0.00 3.85
798 845 2.774351 GGTGGGGATCTGGGAGGG 60.774 72.222 0.00 0.00 0.00 4.30
799 846 3.164269 CGGTGGGGATCTGGGAGG 61.164 72.222 0.00 0.00 0.00 4.30
800 847 3.866582 GCGGTGGGGATCTGGGAG 61.867 72.222 0.00 0.00 0.00 4.30
896 948 4.906618 ACAACAACAATAACGAGGAGGAT 58.093 39.130 0.00 0.00 0.00 3.24
904 956 6.487960 TCCTACAACAACAACAACAATAACG 58.512 36.000 0.00 0.00 0.00 3.18
909 961 4.590918 TCCTCCTACAACAACAACAACAA 58.409 39.130 0.00 0.00 0.00 2.83
910 962 4.196193 CTCCTCCTACAACAACAACAACA 58.804 43.478 0.00 0.00 0.00 3.33
911 963 3.564225 CCTCCTCCTACAACAACAACAAC 59.436 47.826 0.00 0.00 0.00 3.32
949 1007 3.708220 GAGCGCCAAGAGGGAGACG 62.708 68.421 2.29 0.00 39.08 4.18
950 1008 2.185608 GAGCGCCAAGAGGGAGAC 59.814 66.667 2.29 0.00 39.08 3.36
954 1012 4.521062 CCTCGAGCGCCAAGAGGG 62.521 72.222 26.42 13.69 45.77 4.30
956 1014 2.103934 CTCCTCGAGCGCCAAGAG 59.896 66.667 6.99 10.69 0.00 2.85
957 1015 3.452786 CCTCCTCGAGCGCCAAGA 61.453 66.667 6.99 0.00 0.00 3.02
958 1016 4.521062 CCCTCCTCGAGCGCCAAG 62.521 72.222 6.99 0.00 0.00 3.61
968 1026 4.364686 TTCCCCCACCCCCTCCTC 62.365 72.222 0.00 0.00 0.00 3.71
969 1027 4.371231 CTTCCCCCACCCCCTCCT 62.371 72.222 0.00 0.00 0.00 3.69
970 1028 4.364686 TCTTCCCCCACCCCCTCC 62.365 72.222 0.00 0.00 0.00 4.30
971 1029 2.692741 CTCTTCCCCCACCCCCTC 60.693 72.222 0.00 0.00 0.00 4.30
972 1030 4.371231 CCTCTTCCCCCACCCCCT 62.371 72.222 0.00 0.00 0.00 4.79
973 1031 4.364686 TCCTCTTCCCCCACCCCC 62.365 72.222 0.00 0.00 0.00 5.40
974 1032 2.692741 CTCCTCTTCCCCCACCCC 60.693 72.222 0.00 0.00 0.00 4.95
975 1033 2.692741 CCTCCTCTTCCCCCACCC 60.693 72.222 0.00 0.00 0.00 4.61
976 1034 1.690985 CTCCTCCTCTTCCCCCACC 60.691 68.421 0.00 0.00 0.00 4.61
977 1035 1.690985 CCTCCTCCTCTTCCCCCAC 60.691 68.421 0.00 0.00 0.00 4.61
978 1036 1.866997 TCCTCCTCCTCTTCCCCCA 60.867 63.158 0.00 0.00 0.00 4.96
981 1039 1.764454 GCCTCCTCCTCCTCTTCCC 60.764 68.421 0.00 0.00 0.00 3.97
985 1043 1.765657 GCATGCCTCCTCCTCCTCT 60.766 63.158 6.36 0.00 0.00 3.69
987 1045 2.771762 GGCATGCCTCCTCCTCCT 60.772 66.667 29.98 0.00 0.00 3.69
1336 1408 0.251634 GGGAGGAACAGAAGCAGAGG 59.748 60.000 0.00 0.00 0.00 3.69
1340 1412 2.347490 GCGGGAGGAACAGAAGCA 59.653 61.111 0.00 0.00 0.00 3.91
1343 1415 1.229209 AGAGGCGGGAGGAACAGAA 60.229 57.895 0.00 0.00 0.00 3.02
1346 1418 2.822643 ATCCAGAGGCGGGAGGAACA 62.823 60.000 2.31 0.00 37.96 3.18
1348 1420 1.762460 GATCCAGAGGCGGGAGGAA 60.762 63.158 2.31 0.00 37.96 3.36
1382 1454 6.239402 CCAGATCAAAACCTCCACTGATTTTT 60.239 38.462 0.00 0.00 0.00 1.94
1383 1455 5.244626 CCAGATCAAAACCTCCACTGATTTT 59.755 40.000 0.00 0.00 0.00 1.82
1564 1646 3.893763 AGCTCATCTCGACGGCGG 61.894 66.667 12.58 0.62 38.28 6.13
1614 1696 2.019984 GATGAATGGTGGAGCAGGTTC 58.980 52.381 0.00 0.00 0.00 3.62
1615 1697 1.637553 AGATGAATGGTGGAGCAGGTT 59.362 47.619 0.00 0.00 0.00 3.50
1616 1698 1.211457 GAGATGAATGGTGGAGCAGGT 59.789 52.381 0.00 0.00 0.00 4.00
1627 1709 5.419542 TGGAACTAAACCGAGAGATGAATG 58.580 41.667 0.00 0.00 0.00 2.67
1645 1727 3.314635 CAGAGCCATAGAGCAATTGGAAC 59.685 47.826 7.72 0.00 34.23 3.62
1658 1740 1.208052 GCAACCAGAGACAGAGCCATA 59.792 52.381 0.00 0.00 0.00 2.74
1667 1749 1.736681 GAAGCATGAGCAACCAGAGAC 59.263 52.381 0.00 0.00 45.49 3.36
1669 1751 1.738350 CAGAAGCATGAGCAACCAGAG 59.262 52.381 0.00 0.00 45.49 3.35
1831 1913 2.093890 TCAGAATGCAATGCAATCGGT 58.906 42.857 19.61 1.75 42.55 4.69
1832 1914 2.855660 TCAGAATGCAATGCAATCGG 57.144 45.000 13.45 14.70 42.55 4.18
1880 1962 5.920273 CGATTTACACTGCAAAAGGTCAAAT 59.080 36.000 0.00 0.00 0.00 2.32
1943 2026 7.605410 ATTACAAGTTTATAACACTCACCGG 57.395 36.000 0.00 0.00 0.00 5.28
1955 2038 7.557719 ACAGCAGCTATCCAATTACAAGTTTAT 59.442 33.333 0.00 0.00 0.00 1.40
1996 2079 1.315257 CCCAGCTAAAACCGCAGCAT 61.315 55.000 0.00 0.00 40.36 3.79
2038 2141 9.371136 CTAACTATCAAGCTGAACAGACAATAA 57.629 33.333 5.97 0.00 0.00 1.40
2039 2142 8.531982 ACTAACTATCAAGCTGAACAGACAATA 58.468 33.333 5.97 0.00 0.00 1.90
2040 2143 7.390027 ACTAACTATCAAGCTGAACAGACAAT 58.610 34.615 5.97 0.00 0.00 2.71
2041 2144 6.759272 ACTAACTATCAAGCTGAACAGACAA 58.241 36.000 5.97 0.00 0.00 3.18
2042 2145 6.346477 ACTAACTATCAAGCTGAACAGACA 57.654 37.500 5.97 0.00 0.00 3.41
2043 2146 6.647067 ACAACTAACTATCAAGCTGAACAGAC 59.353 38.462 5.97 0.00 0.00 3.51
2044 2147 6.646653 CACAACTAACTATCAAGCTGAACAGA 59.353 38.462 5.97 0.00 0.00 3.41
2045 2148 6.128445 CCACAACTAACTATCAAGCTGAACAG 60.128 42.308 0.00 0.00 0.00 3.16
2046 2149 5.700832 CCACAACTAACTATCAAGCTGAACA 59.299 40.000 0.00 0.00 0.00 3.18
2047 2150 5.932303 TCCACAACTAACTATCAAGCTGAAC 59.068 40.000 0.00 0.00 0.00 3.18
2048 2151 6.109156 TCCACAACTAACTATCAAGCTGAA 57.891 37.500 0.00 0.00 0.00 3.02
2049 2152 5.246203 ACTCCACAACTAACTATCAAGCTGA 59.754 40.000 0.00 0.00 0.00 4.26
2050 2153 5.482908 ACTCCACAACTAACTATCAAGCTG 58.517 41.667 0.00 0.00 0.00 4.24
2051 2154 5.746990 ACTCCACAACTAACTATCAAGCT 57.253 39.130 0.00 0.00 0.00 3.74
2052 2155 5.932303 TCAACTCCACAACTAACTATCAAGC 59.068 40.000 0.00 0.00 0.00 4.01
2053 2156 8.553459 AATCAACTCCACAACTAACTATCAAG 57.447 34.615 0.00 0.00 0.00 3.02
2054 2157 8.918202 AAATCAACTCCACAACTAACTATCAA 57.082 30.769 0.00 0.00 0.00 2.57
2055 2158 9.431887 GTAAATCAACTCCACAACTAACTATCA 57.568 33.333 0.00 0.00 0.00 2.15
2056 2159 8.880750 GGTAAATCAACTCCACAACTAACTATC 58.119 37.037 0.00 0.00 0.00 2.08
2057 2160 7.827729 GGGTAAATCAACTCCACAACTAACTAT 59.172 37.037 0.00 0.00 0.00 2.12
2058 2161 7.163441 GGGTAAATCAACTCCACAACTAACTA 58.837 38.462 0.00 0.00 0.00 2.24
2081 2184 1.701847 ACCCTGCTCTGCTAATATGGG 59.298 52.381 0.00 0.00 39.26 4.00
2245 2351 1.184322 TTTGGCCATGCATGAACGGT 61.184 50.000 28.31 0.00 0.00 4.83
2246 2352 0.037512 TTTTGGCCATGCATGAACGG 60.038 50.000 28.31 12.38 0.00 4.44
2349 2473 1.668419 ATAGAATCAAGTGGTGCGGC 58.332 50.000 0.00 0.00 0.00 6.53
2575 2699 5.468072 CAGCAGCTACCATAATAAACCTCTG 59.532 44.000 0.00 0.00 0.00 3.35
2602 2726 5.183713 TGGCTGATACTGAAGAAACCATTTG 59.816 40.000 0.00 0.00 0.00 2.32
2607 2731 2.680339 GCTGGCTGATACTGAAGAAACC 59.320 50.000 0.00 0.00 0.00 3.27
2685 2809 6.849085 TGATGTGGCTATAAACCAAATTGT 57.151 33.333 0.00 0.00 35.14 2.71
2688 2812 8.710749 ATACATGATGTGGCTATAAACCAAAT 57.289 30.769 8.61 0.00 37.87 2.32
2753 2877 7.038154 AGGTGAATTTCGAATGACTTGAAAA 57.962 32.000 0.00 0.00 35.46 2.29
2956 3081 4.327982 AGCGCTCCGATATGCATAATAT 57.672 40.909 11.13 0.00 33.94 1.28
2963 3088 0.667487 TGCTAAGCGCTCCGATATGC 60.667 55.000 12.06 8.23 40.11 3.14
2970 3095 1.941325 ATAACTGTGCTAAGCGCTCC 58.059 50.000 12.06 2.59 40.03 4.70
3005 3130 2.859165 TACTTTCCACCTGGCAAGAG 57.141 50.000 10.30 0.00 40.23 2.85
3009 3134 2.969821 ACAATACTTTCCACCTGGCA 57.030 45.000 0.00 0.00 34.44 4.92
3061 3187 1.132643 GATCCTTTCTGCAGCAGCTTG 59.867 52.381 18.43 9.17 42.74 4.01
3129 3255 6.449698 AGCATTCAACTACAAAACTGGAATG 58.550 36.000 0.00 0.00 41.67 2.67
3160 3286 7.918076 AGGACAATAATTGAGGTGACTTAGAA 58.082 34.615 0.00 0.00 44.43 2.10
3178 3304 7.781324 AAATGATTACAAACTGGAGGACAAT 57.219 32.000 0.00 0.00 0.00 2.71
3196 3322 9.656040 TGCATTCTTTAAGCATACAAAAATGAT 57.344 25.926 0.00 0.00 32.55 2.45
3213 3339 3.463048 AGTCCCCAAGATGCATTCTTT 57.537 42.857 0.00 0.00 42.15 2.52
3227 3353 1.632589 ATCACAAAAGGCAAGTCCCC 58.367 50.000 0.00 0.00 34.51 4.81
3228 3354 3.751479 AAATCACAAAAGGCAAGTCCC 57.249 42.857 0.00 0.00 34.51 4.46
3257 3383 3.091545 TCCCTGGCAACTGATGAAAATC 58.908 45.455 0.00 0.00 37.83 2.17
3306 3432 4.707988 GCAGCAAGCGTCACAAAA 57.292 50.000 0.00 0.00 0.00 2.44
3354 3480 4.330074 GCACGTACTTGCAATAGAATCTGT 59.670 41.667 18.60 0.00 42.49 3.41
3375 3501 9.225436 TGAATAACATTAGTCATTACAGTTGCA 57.775 29.630 0.00 0.00 33.39 4.08
3424 3550 3.565902 GGAAATAAGGAAAGATGCGAGGG 59.434 47.826 0.00 0.00 0.00 4.30
3429 3555 8.929746 CAAGAAAAAGGAAATAAGGAAAGATGC 58.070 33.333 0.00 0.00 0.00 3.91
3440 3566 8.846211 CAGGAAGTGTACAAGAAAAAGGAAATA 58.154 33.333 0.00 0.00 0.00 1.40
3441 3567 7.342026 ACAGGAAGTGTACAAGAAAAAGGAAAT 59.658 33.333 0.00 0.00 37.75 2.17
3486 3614 4.968812 TCAATATCCACATGCACACAAG 57.031 40.909 0.00 0.00 0.00 3.16
3489 3617 7.650890 TGAAATATCAATATCCACATGCACAC 58.349 34.615 0.00 0.00 30.99 3.82
3528 3656 1.529622 CGCATGTGAAGCAACATACCG 60.530 52.381 0.00 3.35 38.75 4.02
3569 3699 4.806247 GCATTAGAAGTACTGAAGTGCGAT 59.194 41.667 0.00 0.00 35.74 4.58
3572 3702 3.623510 GGGCATTAGAAGTACTGAAGTGC 59.376 47.826 0.00 3.85 0.00 4.40
3573 3703 4.832248 TGGGCATTAGAAGTACTGAAGTG 58.168 43.478 0.00 0.00 0.00 3.16
3574 3704 5.499004 TTGGGCATTAGAAGTACTGAAGT 57.501 39.130 0.00 0.00 0.00 3.01
3629 3759 9.599866 GCCTTAATTCAATTAAATAGGCAGTTT 57.400 29.630 20.06 0.00 40.49 2.66
3630 3760 8.757877 TGCCTTAATTCAATTAAATAGGCAGTT 58.242 29.630 22.41 0.00 43.09 3.16
3631 3761 8.305046 TGCCTTAATTCAATTAAATAGGCAGT 57.695 30.769 22.41 0.00 43.09 4.40
3632 3762 9.768662 AATGCCTTAATTCAATTAAATAGGCAG 57.231 29.630 26.93 7.61 46.97 4.85
3638 3768 9.895138 AGAGCAAATGCCTTAATTCAATTAAAT 57.105 25.926 4.15 0.00 43.38 1.40
3639 3769 9.153721 CAGAGCAAATGCCTTAATTCAATTAAA 57.846 29.630 4.15 0.00 43.38 1.52
3640 3770 7.765360 CCAGAGCAAATGCCTTAATTCAATTAA 59.235 33.333 2.56 2.56 43.38 1.40
3641 3771 7.267128 CCAGAGCAAATGCCTTAATTCAATTA 58.733 34.615 0.94 0.00 43.38 1.40
3642 3772 6.110707 CCAGAGCAAATGCCTTAATTCAATT 58.889 36.000 0.94 0.00 43.38 2.32
3643 3773 5.395990 CCCAGAGCAAATGCCTTAATTCAAT 60.396 40.000 0.94 0.00 43.38 2.57
3644 3774 4.081531 CCCAGAGCAAATGCCTTAATTCAA 60.082 41.667 0.94 0.00 43.38 2.69
3645 3775 3.448301 CCCAGAGCAAATGCCTTAATTCA 59.552 43.478 0.94 0.00 43.38 2.57
3646 3776 3.448660 ACCCAGAGCAAATGCCTTAATTC 59.551 43.478 0.94 0.00 43.38 2.17
3647 3777 3.444029 ACCCAGAGCAAATGCCTTAATT 58.556 40.909 0.94 0.00 43.38 1.40
3682 3813 4.517285 CAAGAACCAAGCCTATTAGCTGA 58.483 43.478 0.00 0.00 44.11 4.26
3692 3826 6.558771 AAATAAAATTGCAAGAACCAAGCC 57.441 33.333 4.94 0.00 0.00 4.35
3763 3898 2.123342 GGATCGAGCTCTCATTCAACG 58.877 52.381 12.85 0.00 0.00 4.10
3813 3948 6.676558 AGACCATTTGATTATCTCCATGGTT 58.323 36.000 12.58 0.58 42.76 3.67
3815 3950 6.373774 GCTAGACCATTTGATTATCTCCATGG 59.626 42.308 4.97 4.97 38.69 3.66
3889 4024 1.726853 AAGCCCGAACTTCAGATTCG 58.273 50.000 0.26 0.26 46.67 3.34
3901 4036 7.468631 GCTTAAGATCAAAATCATAAAGCCCGA 60.469 37.037 6.67 0.00 37.28 5.14
3902 4037 6.638468 GCTTAAGATCAAAATCATAAAGCCCG 59.362 38.462 6.67 0.00 37.28 6.13
3971 4106 5.406649 GGATGGATCGAGCAGAAACTATAG 58.593 45.833 1.84 0.00 0.00 1.31
3977 4112 0.104855 CGGGATGGATCGAGCAGAAA 59.895 55.000 1.84 0.00 0.00 2.52
3985 4121 2.038387 AGGAAAAACGGGATGGATCG 57.962 50.000 0.00 0.00 0.00 3.69
4022 4158 5.083533 AGCTGTGGACTCTAGATGAAAAG 57.916 43.478 0.00 0.00 0.00 2.27
4040 4176 0.670162 CCCCGCATTTATCCAAGCTG 59.330 55.000 0.00 0.00 0.00 4.24
4054 4190 8.139350 AGTTTACTAAAATAATATTTGCCCCGC 58.861 33.333 0.00 0.00 0.00 6.13
4559 4696 1.934589 TTACATTCCGACGCAGATGG 58.065 50.000 0.00 0.00 0.00 3.51
4662 4799 7.703058 ACCTCGTCCTGATTTTATTTCAAAT 57.297 32.000 0.00 0.00 0.00 2.32
4666 4803 7.548075 TCACTTACCTCGTCCTGATTTTATTTC 59.452 37.037 0.00 0.00 0.00 2.17
4681 4818 5.116180 TCAATTGCCTAATCACTTACCTCG 58.884 41.667 0.00 0.00 0.00 4.63
4874 5011 3.365820 GCATACACAAGAAATGCTGTTGC 59.634 43.478 0.00 0.00 42.15 4.17
5031 5172 8.817100 CAACCTGAAAGAACAAGGTAAAATTTC 58.183 33.333 0.00 0.00 34.07 2.17
5183 5325 6.944862 GCATCCCCAAGAAGAATATGTAATCT 59.055 38.462 0.00 0.00 0.00 2.40
5184 5326 6.716628 TGCATCCCCAAGAAGAATATGTAATC 59.283 38.462 0.00 0.00 0.00 1.75
5185 5327 6.613699 TGCATCCCCAAGAAGAATATGTAAT 58.386 36.000 0.00 0.00 0.00 1.89
5204 5346 0.675837 TGCCTCAGCTCAGTTGCATC 60.676 55.000 0.00 0.00 40.80 3.91
5345 5487 4.517075 TCAGTATTCATGTCTCCGAGCTAG 59.483 45.833 0.00 0.00 0.00 3.42
5418 5560 3.242011 AGGCAGAACAAAAATGTGGGAT 58.758 40.909 0.00 0.00 0.00 3.85
5576 5722 2.455557 TGGCATGGACTAAACAATGGG 58.544 47.619 0.00 0.00 0.00 4.00
5588 5734 3.010027 TGAACCTCAACTATTGGCATGGA 59.990 43.478 0.00 0.00 0.00 3.41
5773 5920 4.290985 TCCCCACTAAATGAAGGTGAATCA 59.709 41.667 0.00 0.00 33.32 2.57
5968 6116 2.943033 AGTGGCTTATAAACACGGATGC 59.057 45.455 11.95 0.00 39.95 3.91
5997 6149 5.992217 ACACTGATGAGACAAAAAGGACTAC 59.008 40.000 0.00 0.00 0.00 2.73
6004 6156 5.192927 ACTTGGACACTGATGAGACAAAAA 58.807 37.500 0.00 0.00 0.00 1.94
6174 6327 5.316987 AGGTTCTGAACAGGGTCTTAAATG 58.683 41.667 21.01 0.00 0.00 2.32
6191 6344 6.000840 GGAGTTTTGAGATTTGAGAGGTTCT 58.999 40.000 0.00 0.00 0.00 3.01
6245 6398 0.673644 CAGGTAGTGGCTCAAACCGG 60.674 60.000 0.00 0.00 37.09 5.28
6260 6413 3.689649 GGAACGATAGCACAATTTCAGGT 59.310 43.478 0.00 0.00 42.67 4.00
6275 6428 2.494918 CGGAGCGGAAGGAACGAT 59.505 61.111 0.00 0.00 0.00 3.73
6299 6452 1.490490 TCCTCTTTGCTCCACAACTGT 59.510 47.619 0.00 0.00 38.23 3.55
6322 6475 2.109128 TGGGCATTTTAGGACCTGTTCA 59.891 45.455 3.53 0.00 33.26 3.18
6376 6529 2.483106 CTCCTTGCTGTTGACACTCATG 59.517 50.000 0.00 0.00 0.00 3.07
6395 6548 5.358090 TCATGCTCTGACATTCATCTTCTC 58.642 41.667 0.00 0.00 0.00 2.87
6546 6699 6.358974 TGTCAGGAATGATACTGAAGTCAA 57.641 37.500 1.95 0.00 44.53 3.18
6663 6816 4.346730 ACAATCCTGCCAAAATCAGATCA 58.653 39.130 0.00 0.00 33.54 2.92
6664 6817 4.996788 ACAATCCTGCCAAAATCAGATC 57.003 40.909 0.00 0.00 33.54 2.75
6755 6908 3.181487 ACACAGATTGCTTGTGTTTGTCC 60.181 43.478 5.27 0.00 43.29 4.02
6756 6909 3.792956 CACACAGATTGCTTGTGTTTGTC 59.207 43.478 8.18 0.00 43.29 3.18
6759 6912 3.489738 GCTCACACAGATTGCTTGTGTTT 60.490 43.478 8.18 0.00 43.29 2.83
6760 6913 2.033801 GCTCACACAGATTGCTTGTGTT 59.966 45.455 8.18 0.00 43.29 3.32
6824 6977 2.535485 TACTGCAATCCAGGTGGCCG 62.535 60.000 0.00 0.00 46.14 6.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.