Multiple sequence alignment - TraesCS7B01G007100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G007100 chr7B 100.000 3041 0 0 1 3041 3881376 3884416 0.000000e+00 5616
1 TraesCS7B01G007100 chr7B 95.210 668 25 1 1 661 3867629 3868296 0.000000e+00 1050
2 TraesCS7B01G007100 chr7D 93.928 1795 79 16 662 2426 63462549 63464343 0.000000e+00 2684
3 TraesCS7B01G007100 chr7D 85.551 263 14 9 2423 2662 63464619 63464880 1.400000e-63 254
4 TraesCS7B01G007100 chr4D 85.599 1736 179 40 662 2361 505358681 505356981 0.000000e+00 1755
5 TraesCS7B01G007100 chr4D 81.161 1327 198 28 670 1976 435198749 435197455 0.000000e+00 1018
6 TraesCS7B01G007100 chr4D 76.062 1224 228 52 669 1861 97969795 97968606 7.310000e-161 577
7 TraesCS7B01G007100 chr3B 94.303 667 31 2 1 660 136697026 136697692 0.000000e+00 1014
8 TraesCS7B01G007100 chr3B 94.003 667 33 2 1 660 659921158 659920492 0.000000e+00 1003
9 TraesCS7B01G007100 chr3B 93.713 668 35 3 1 661 659926133 659925466 0.000000e+00 994
10 TraesCS7B01G007100 chr3B 93.797 661 36 1 1 661 136692063 136692718 0.000000e+00 989
11 TraesCS7B01G007100 chr3B 93.553 667 36 3 1 660 426725617 426726283 0.000000e+00 987
12 TraesCS7B01G007100 chr3B 92.665 668 42 3 1 661 426720643 426721310 0.000000e+00 955
13 TraesCS7B01G007100 chr3B 77.876 1243 214 42 666 1865 706754886 706756110 0.000000e+00 715
14 TraesCS7B01G007100 chr3B 77.714 1216 221 31 666 1862 706183084 706184268 0.000000e+00 699
15 TraesCS7B01G007100 chr1B 93.713 668 34 3 1 661 268650858 268651524 0.000000e+00 994
16 TraesCS7B01G007100 chr4B 80.420 1333 213 30 661 1976 535331505 535330204 0.000000e+00 972
17 TraesCS7B01G007100 chr4B 78.741 1223 214 31 661 1874 460156620 460155435 0.000000e+00 776
18 TraesCS7B01G007100 chr4A 79.612 1339 218 30 661 1976 36607783 36606477 0.000000e+00 909
19 TraesCS7B01G007100 chr4A 78.176 1283 223 36 661 1904 478191408 478192672 0.000000e+00 765
20 TraesCS7B01G007100 chr5A 91.465 621 48 3 41 660 704476778 704477394 0.000000e+00 848
21 TraesCS7B01G007100 chr5A 80.463 993 136 32 1117 2088 689631005 689630050 0.000000e+00 706
22 TraesCS7B01G007100 chr3D 77.805 1239 218 35 666 1865 535400158 535401378 0.000000e+00 712
23 TraesCS7B01G007100 chr6B 76.316 912 163 29 670 1553 134838676 134839562 3.600000e-119 438
24 TraesCS7B01G007100 chr7A 84.091 220 11 13 2423 2624 66252169 66252382 1.110000e-44 191


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G007100 chr7B 3881376 3884416 3040 False 5616 5616 100.0000 1 3041 1 chr7B.!!$F2 3040
1 TraesCS7B01G007100 chr7B 3867629 3868296 667 False 1050 1050 95.2100 1 661 1 chr7B.!!$F1 660
2 TraesCS7B01G007100 chr7D 63462549 63464880 2331 False 1469 2684 89.7395 662 2662 2 chr7D.!!$F1 2000
3 TraesCS7B01G007100 chr4D 505356981 505358681 1700 True 1755 1755 85.5990 662 2361 1 chr4D.!!$R3 1699
4 TraesCS7B01G007100 chr4D 435197455 435198749 1294 True 1018 1018 81.1610 670 1976 1 chr4D.!!$R2 1306
5 TraesCS7B01G007100 chr4D 97968606 97969795 1189 True 577 577 76.0620 669 1861 1 chr4D.!!$R1 1192
6 TraesCS7B01G007100 chr3B 136697026 136697692 666 False 1014 1014 94.3030 1 660 1 chr3B.!!$F2 659
7 TraesCS7B01G007100 chr3B 659920492 659921158 666 True 1003 1003 94.0030 1 660 1 chr3B.!!$R1 659
8 TraesCS7B01G007100 chr3B 659925466 659926133 667 True 994 994 93.7130 1 661 1 chr3B.!!$R2 660
9 TraesCS7B01G007100 chr3B 136692063 136692718 655 False 989 989 93.7970 1 661 1 chr3B.!!$F1 660
10 TraesCS7B01G007100 chr3B 426725617 426726283 666 False 987 987 93.5530 1 660 1 chr3B.!!$F4 659
11 TraesCS7B01G007100 chr3B 426720643 426721310 667 False 955 955 92.6650 1 661 1 chr3B.!!$F3 660
12 TraesCS7B01G007100 chr3B 706754886 706756110 1224 False 715 715 77.8760 666 1865 1 chr3B.!!$F6 1199
13 TraesCS7B01G007100 chr3B 706183084 706184268 1184 False 699 699 77.7140 666 1862 1 chr3B.!!$F5 1196
14 TraesCS7B01G007100 chr1B 268650858 268651524 666 False 994 994 93.7130 1 661 1 chr1B.!!$F1 660
15 TraesCS7B01G007100 chr4B 535330204 535331505 1301 True 972 972 80.4200 661 1976 1 chr4B.!!$R2 1315
16 TraesCS7B01G007100 chr4B 460155435 460156620 1185 True 776 776 78.7410 661 1874 1 chr4B.!!$R1 1213
17 TraesCS7B01G007100 chr4A 36606477 36607783 1306 True 909 909 79.6120 661 1976 1 chr4A.!!$R1 1315
18 TraesCS7B01G007100 chr4A 478191408 478192672 1264 False 765 765 78.1760 661 1904 1 chr4A.!!$F1 1243
19 TraesCS7B01G007100 chr5A 704476778 704477394 616 False 848 848 91.4650 41 660 1 chr5A.!!$F1 619
20 TraesCS7B01G007100 chr5A 689630050 689631005 955 True 706 706 80.4630 1117 2088 1 chr5A.!!$R1 971
21 TraesCS7B01G007100 chr3D 535400158 535401378 1220 False 712 712 77.8050 666 1865 1 chr3D.!!$F1 1199
22 TraesCS7B01G007100 chr6B 134838676 134839562 886 False 438 438 76.3160 670 1553 1 chr6B.!!$F1 883

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
318 319 0.912486 AAGTCCAGCCGCCTCTTATT 59.088 50.0 0.0 0.0 0.0 1.40 F
1308 1347 0.247460 TCATCAAGGTGCCTCGTCTG 59.753 55.0 0.0 0.0 0.0 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2031 2215 0.525761 TGCGGCTTCATTACTTTGCC 59.474 50.0 0.0 0.0 40.14 4.52 R
2729 3257 0.039074 CACGGTCTCTATCGGATGCC 60.039 60.0 0.0 0.0 31.84 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
187 188 6.386654 CAAAATACAGCCAGTTTAAACCGAT 58.613 36.000 14.72 1.41 0.00 4.18
283 284 9.520515 TTCTTGTAAGAAAAGCCTAGATGAATT 57.479 29.630 4.66 0.00 41.75 2.17
298 299 7.764443 CCTAGATGAATTCTTTTCTTGTACGGA 59.236 37.037 7.05 0.00 35.79 4.69
318 319 0.912486 AAGTCCAGCCGCCTCTTATT 59.088 50.000 0.00 0.00 0.00 1.40
325 326 3.632145 CCAGCCGCCTCTTATTTATGTTT 59.368 43.478 0.00 0.00 0.00 2.83
408 410 8.437575 ACTTTTACATCTCTCCCTTGTTCTTTA 58.562 33.333 0.00 0.00 0.00 1.85
431 440 4.847633 TCTCTCGTTCTTCGTTCGTTTTA 58.152 39.130 0.00 0.00 40.80 1.52
517 526 3.273654 TCCAGACGGGGTCCCTCT 61.274 66.667 8.15 0.10 37.22 3.69
604 613 1.153997 GTCTCCTTCGACGTGAGCC 60.154 63.158 0.00 0.00 0.00 4.70
1257 1291 1.078709 CATACCTGCAGTTGGACACG 58.921 55.000 13.81 0.00 0.00 4.49
1308 1347 0.247460 TCATCAAGGTGCCTCGTCTG 59.753 55.000 0.00 0.00 0.00 3.51
1309 1348 0.247460 CATCAAGGTGCCTCGTCTGA 59.753 55.000 0.00 0.00 0.00 3.27
1310 1349 1.134580 CATCAAGGTGCCTCGTCTGAT 60.135 52.381 0.00 0.00 0.00 2.90
1311 1350 1.847328 TCAAGGTGCCTCGTCTGATA 58.153 50.000 0.00 0.00 0.00 2.15
1352 1412 3.758554 CTGTAAACTCTCCATTTGTGGGG 59.241 47.826 0.00 0.00 0.00 4.96
1533 1618 2.561733 TTCCTAATGTCGAGACGCTG 57.438 50.000 0.00 0.00 0.00 5.18
1653 1817 6.579666 ACTTCATGTGCATTTAACTGATGT 57.420 33.333 0.00 0.00 0.00 3.06
1654 1818 6.384224 ACTTCATGTGCATTTAACTGATGTG 58.616 36.000 0.00 0.00 0.00 3.21
1743 1918 1.597742 GTGCCATAGAATGCATCCGT 58.402 50.000 0.00 0.00 40.07 4.69
1876 2051 3.058160 CCGCTGGCTCCACTTTGG 61.058 66.667 0.00 0.00 39.43 3.28
1933 2117 1.201429 ACGGGCAGGTGAAATCTCCT 61.201 55.000 0.00 0.00 40.20 3.69
1963 2147 4.125703 GGTCACTGGCTATTCTGATCTTG 58.874 47.826 0.00 0.00 0.00 3.02
2037 2221 5.876460 CCTTATGAAATTTCCTTGGGCAAAG 59.124 40.000 15.48 0.00 35.47 2.77
2040 2224 5.878406 TGAAATTTCCTTGGGCAAAGTAA 57.122 34.783 15.48 0.00 33.66 2.24
2048 2232 1.173043 TGGGCAAAGTAATGAAGCCG 58.827 50.000 0.00 0.00 46.12 5.52
2088 2272 4.380867 CGCAAATTGCCTTGGAAGTTATCT 60.381 41.667 12.80 0.00 41.12 1.98
2160 2350 1.134098 CAGTGTTTGGATATCCGCCCT 60.134 52.381 17.04 5.48 39.43 5.19
2174 2364 0.600255 CGCCCTGTCGACTCTTGTTT 60.600 55.000 17.92 0.00 0.00 2.83
2187 2397 7.436673 GTCGACTCTTGTTTCATGATTAGCTAT 59.563 37.037 8.70 0.00 0.00 2.97
2209 2419 8.848182 GCTATGTGTCCAAGTTAGTATACTACT 58.152 37.037 12.25 9.94 42.68 2.57
2213 2423 9.519191 TGTGTCCAAGTTAGTATACTACTTACA 57.481 33.333 12.25 15.22 39.93 2.41
2250 2476 3.535561 AGTATTGATCTTCGGTTGGCAG 58.464 45.455 0.00 0.00 0.00 4.85
2267 2493 0.526662 CAGTCACGGACCTCTGTACC 59.473 60.000 0.00 0.00 33.39 3.34
2280 2506 3.244561 CCTCTGTACCCTGTGTTTCATGT 60.245 47.826 0.00 0.00 0.00 3.21
2285 2511 1.412343 ACCCTGTGTTTCATGTTTGCC 59.588 47.619 0.00 0.00 0.00 4.52
2286 2512 1.688197 CCCTGTGTTTCATGTTTGCCT 59.312 47.619 0.00 0.00 0.00 4.75
2363 2589 3.531934 GGCTTGATGCAGGCTAATTTT 57.468 42.857 0.00 0.00 45.15 1.82
2364 2590 3.451526 GGCTTGATGCAGGCTAATTTTC 58.548 45.455 0.00 0.00 45.15 2.29
2367 2593 4.339247 GCTTGATGCAGGCTAATTTTCCTA 59.661 41.667 0.00 0.00 42.31 2.94
2406 2632 0.111253 AGTTCCTTCCCAGCTGGTTG 59.889 55.000 30.63 16.96 34.77 3.77
2410 2636 1.531365 CTTCCCAGCTGGTTGCCAA 60.531 57.895 30.63 13.73 44.23 4.52
2426 2652 1.855513 CCAATTGTGCTGTGGTTGTG 58.144 50.000 4.43 0.00 0.00 3.33
2428 2654 2.195096 CAATTGTGCTGTGGTTGTGTG 58.805 47.619 0.00 0.00 0.00 3.82
2429 2655 0.102844 ATTGTGCTGTGGTTGTGTGC 59.897 50.000 0.00 0.00 0.00 4.57
2430 2656 0.964860 TTGTGCTGTGGTTGTGTGCT 60.965 50.000 0.00 0.00 0.00 4.40
2431 2657 0.964860 TGTGCTGTGGTTGTGTGCTT 60.965 50.000 0.00 0.00 0.00 3.91
2432 2658 1.021202 GTGCTGTGGTTGTGTGCTTA 58.979 50.000 0.00 0.00 0.00 3.09
2433 2659 1.021202 TGCTGTGGTTGTGTGCTTAC 58.979 50.000 0.00 0.00 0.00 2.34
2436 2942 1.873591 CTGTGGTTGTGTGCTTACTCC 59.126 52.381 0.00 0.00 0.00 3.85
2443 2949 3.402628 TGTGTGCTTACTCCTCCTTTC 57.597 47.619 0.00 0.00 0.00 2.62
2466 2972 4.093556 CGGCATCTCCTTCTAAAACAGTTC 59.906 45.833 0.00 0.00 0.00 3.01
2526 3032 6.890268 ACACATATCACACCTTCAGTCTACTA 59.110 38.462 0.00 0.00 0.00 1.82
2534 3040 4.950475 CACCTTCAGTCTACTATGTCTCCA 59.050 45.833 0.00 0.00 0.00 3.86
2535 3041 5.419155 CACCTTCAGTCTACTATGTCTCCAA 59.581 44.000 0.00 0.00 0.00 3.53
2536 3042 5.654650 ACCTTCAGTCTACTATGTCTCCAAG 59.345 44.000 0.00 0.00 0.00 3.61
2537 3043 5.654650 CCTTCAGTCTACTATGTCTCCAAGT 59.345 44.000 0.00 0.00 0.00 3.16
2538 3044 6.183360 CCTTCAGTCTACTATGTCTCCAAGTC 60.183 46.154 0.00 0.00 0.00 3.01
2539 3045 5.194432 TCAGTCTACTATGTCTCCAAGTCC 58.806 45.833 0.00 0.00 0.00 3.85
2540 3046 4.950475 CAGTCTACTATGTCTCCAAGTCCA 59.050 45.833 0.00 0.00 0.00 4.02
2545 3068 1.208165 ATGTCTCCAAGTCCACCCCC 61.208 60.000 0.00 0.00 0.00 5.40
2552 3075 0.250901 CAAGTCCACCCCCTTGTCAG 60.251 60.000 0.00 0.00 34.67 3.51
2553 3076 0.697854 AAGTCCACCCCCTTGTCAGT 60.698 55.000 0.00 0.00 0.00 3.41
2612 3140 6.748132 AGGTCATTTTACATGTTTCAACTGG 58.252 36.000 2.30 0.00 0.00 4.00
2617 3145 8.908903 TCATTTTACATGTTTCAACTGGTAAGT 58.091 29.630 2.30 0.00 38.71 2.24
2625 3153 8.832521 CATGTTTCAACTGGTAAGTTACTAACA 58.167 33.333 12.65 7.27 45.07 2.41
2631 3159 8.698210 TCAACTGGTAAGTTACTAACAAAGAGA 58.302 33.333 12.65 0.00 45.07 3.10
2640 3168 8.073355 AGTTACTAACAAAGAGACAAACATCG 57.927 34.615 1.79 0.00 0.00 3.84
2652 3180 3.196463 ACAAACATCGTAAACCGTGTCA 58.804 40.909 0.00 0.00 37.94 3.58
2662 3190 3.547054 AAACCGTGTCAGTTTAGGTGA 57.453 42.857 0.00 0.00 35.71 4.02
2663 3191 3.547054 AACCGTGTCAGTTTAGGTGAA 57.453 42.857 0.00 0.00 35.08 3.18
2664 3192 3.107642 ACCGTGTCAGTTTAGGTGAAG 57.892 47.619 0.00 0.00 33.37 3.02
2665 3193 1.798813 CCGTGTCAGTTTAGGTGAAGC 59.201 52.381 0.00 0.00 0.00 3.86
2666 3194 2.479837 CGTGTCAGTTTAGGTGAAGCA 58.520 47.619 0.00 0.00 0.00 3.91
2667 3195 2.221055 CGTGTCAGTTTAGGTGAAGCAC 59.779 50.000 0.00 0.00 0.00 4.40
2668 3196 3.202906 GTGTCAGTTTAGGTGAAGCACA 58.797 45.455 0.00 0.00 35.86 4.57
2677 3205 3.177884 TGAAGCACACAGGGGGCT 61.178 61.111 0.00 0.00 40.14 5.19
2678 3206 2.360475 GAAGCACACAGGGGGCTC 60.360 66.667 0.00 0.00 36.76 4.70
2679 3207 3.177884 AAGCACACAGGGGGCTCA 61.178 61.111 0.00 0.00 36.76 4.26
2680 3208 2.490270 GAAGCACACAGGGGGCTCAT 62.490 60.000 0.00 0.00 36.76 2.90
2681 3209 2.036256 GCACACAGGGGGCTCATT 59.964 61.111 0.00 0.00 0.00 2.57
2682 3210 1.607467 GCACACAGGGGGCTCATTT 60.607 57.895 0.00 0.00 0.00 2.32
2683 3211 1.880819 GCACACAGGGGGCTCATTTG 61.881 60.000 0.00 0.00 0.00 2.32
2684 3212 0.540365 CACACAGGGGGCTCATTTGT 60.540 55.000 0.00 0.00 0.00 2.83
2685 3213 1.072266 ACACAGGGGGCTCATTTGTA 58.928 50.000 0.00 0.00 0.00 2.41
2686 3214 1.271926 ACACAGGGGGCTCATTTGTAC 60.272 52.381 0.00 0.00 0.00 2.90
2687 3215 1.004745 CACAGGGGGCTCATTTGTACT 59.995 52.381 0.00 0.00 0.00 2.73
2688 3216 2.238646 CACAGGGGGCTCATTTGTACTA 59.761 50.000 0.00 0.00 0.00 1.82
2689 3217 2.238898 ACAGGGGGCTCATTTGTACTAC 59.761 50.000 0.00 0.00 0.00 2.73
2690 3218 1.485066 AGGGGGCTCATTTGTACTACG 59.515 52.381 0.00 0.00 0.00 3.51
2691 3219 1.483415 GGGGGCTCATTTGTACTACGA 59.517 52.381 0.00 0.00 0.00 3.43
2692 3220 2.483188 GGGGGCTCATTTGTACTACGAG 60.483 54.545 0.00 0.00 0.00 4.18
2693 3221 2.167900 GGGGCTCATTTGTACTACGAGT 59.832 50.000 0.00 0.00 0.00 4.18
2694 3222 3.382546 GGGGCTCATTTGTACTACGAGTA 59.617 47.826 0.00 0.00 0.00 2.59
2695 3223 4.499357 GGGGCTCATTTGTACTACGAGTAG 60.499 50.000 8.58 8.58 39.04 2.57
2697 3225 5.297776 GGGCTCATTTGTACTACGAGTAGTA 59.702 44.000 16.55 16.55 43.98 1.82
2711 3239 8.783999 CTACGAGTAGTAGTTAAACCATCATG 57.216 38.462 2.46 0.00 45.91 3.07
2712 3240 6.570692 ACGAGTAGTAGTTAAACCATCATGG 58.429 40.000 0.54 0.54 45.02 3.66
2713 3241 6.379133 ACGAGTAGTAGTTAAACCATCATGGA 59.621 38.462 11.90 0.00 40.96 3.41
2714 3242 6.918569 CGAGTAGTAGTTAAACCATCATGGAG 59.081 42.308 11.90 0.00 40.96 3.86
2715 3243 6.583562 AGTAGTAGTTAAACCATCATGGAGC 58.416 40.000 11.90 0.00 40.96 4.70
2716 3244 5.435686 AGTAGTTAAACCATCATGGAGCA 57.564 39.130 11.90 0.00 40.96 4.26
2717 3245 6.006275 AGTAGTTAAACCATCATGGAGCAT 57.994 37.500 11.90 0.00 40.96 3.79
2718 3246 6.058183 AGTAGTTAAACCATCATGGAGCATC 58.942 40.000 11.90 0.00 40.96 3.91
2719 3247 4.858850 AGTTAAACCATCATGGAGCATCA 58.141 39.130 11.90 0.00 40.96 3.07
2720 3248 4.641989 AGTTAAACCATCATGGAGCATCAC 59.358 41.667 11.90 0.00 40.96 3.06
2721 3249 3.377253 AAACCATCATGGAGCATCACT 57.623 42.857 11.90 0.00 40.96 3.41
2722 3250 2.343484 ACCATCATGGAGCATCACTG 57.657 50.000 11.90 0.00 40.96 3.66
2723 3251 1.749635 ACCATCATGGAGCATCACTGC 60.750 52.381 11.90 0.00 44.34 4.40
2724 3252 4.979611 ACCATCATGGAGCATCACTGCC 62.980 54.545 11.90 0.00 44.76 4.85
2743 3271 2.808919 CCTAAGGGCATCCGATAGAGA 58.191 52.381 0.00 0.00 38.33 3.10
2744 3272 2.494073 CCTAAGGGCATCCGATAGAGAC 59.506 54.545 0.00 0.00 38.33 3.36
2745 3273 1.343069 AAGGGCATCCGATAGAGACC 58.657 55.000 0.00 0.00 38.33 3.85
2746 3274 0.896019 AGGGCATCCGATAGAGACCG 60.896 60.000 0.00 0.00 35.81 4.79
2747 3275 1.179814 GGGCATCCGATAGAGACCGT 61.180 60.000 0.00 0.00 39.76 4.83
2748 3276 0.039074 GGCATCCGATAGAGACCGTG 60.039 60.000 0.00 0.00 39.76 4.94
2749 3277 0.952280 GCATCCGATAGAGACCGTGA 59.048 55.000 0.00 0.00 39.76 4.35
2750 3278 1.337071 GCATCCGATAGAGACCGTGAA 59.663 52.381 0.00 0.00 39.76 3.18
2751 3279 2.859032 GCATCCGATAGAGACCGTGAAC 60.859 54.545 0.00 0.00 39.76 3.18
2752 3280 2.118313 TCCGATAGAGACCGTGAACA 57.882 50.000 0.00 0.00 39.76 3.18
2753 3281 2.439409 TCCGATAGAGACCGTGAACAA 58.561 47.619 0.00 0.00 39.76 2.83
2754 3282 2.163010 TCCGATAGAGACCGTGAACAAC 59.837 50.000 0.00 0.00 39.76 3.32
2755 3283 2.094906 CCGATAGAGACCGTGAACAACA 60.095 50.000 0.00 0.00 39.76 3.33
2756 3284 3.571571 CGATAGAGACCGTGAACAACAA 58.428 45.455 0.00 0.00 39.76 2.83
2757 3285 3.985279 CGATAGAGACCGTGAACAACAAA 59.015 43.478 0.00 0.00 39.76 2.83
2758 3286 4.446385 CGATAGAGACCGTGAACAACAAAA 59.554 41.667 0.00 0.00 39.76 2.44
2759 3287 5.611844 CGATAGAGACCGTGAACAACAAAAC 60.612 44.000 0.00 0.00 39.76 2.43
2760 3288 2.681344 AGAGACCGTGAACAACAAAACC 59.319 45.455 0.00 0.00 0.00 3.27
2761 3289 2.420722 GAGACCGTGAACAACAAAACCA 59.579 45.455 0.00 0.00 0.00 3.67
2762 3290 3.020984 AGACCGTGAACAACAAAACCAT 58.979 40.909 0.00 0.00 0.00 3.55
2763 3291 3.445805 AGACCGTGAACAACAAAACCATT 59.554 39.130 0.00 0.00 0.00 3.16
2764 3292 3.776340 ACCGTGAACAACAAAACCATTC 58.224 40.909 0.00 0.00 0.00 2.67
2765 3293 3.120041 CCGTGAACAACAAAACCATTCC 58.880 45.455 0.00 0.00 0.00 3.01
2766 3294 3.429547 CCGTGAACAACAAAACCATTCCA 60.430 43.478 0.00 0.00 0.00 3.53
2767 3295 4.367450 CGTGAACAACAAAACCATTCCAT 58.633 39.130 0.00 0.00 0.00 3.41
2768 3296 4.208873 CGTGAACAACAAAACCATTCCATG 59.791 41.667 0.00 0.00 0.00 3.66
2781 3309 5.757850 CCATTCCATGGCTAGTTCTAAAC 57.242 43.478 6.96 0.00 44.70 2.01
2782 3310 5.192927 CCATTCCATGGCTAGTTCTAAACA 58.807 41.667 6.96 0.00 44.70 2.83
2783 3311 5.066505 CCATTCCATGGCTAGTTCTAAACAC 59.933 44.000 6.96 0.00 44.70 3.32
2784 3312 3.857052 TCCATGGCTAGTTCTAAACACG 58.143 45.455 6.96 0.00 0.00 4.49
2785 3313 3.259876 TCCATGGCTAGTTCTAAACACGT 59.740 43.478 6.96 0.00 0.00 4.49
2786 3314 4.463539 TCCATGGCTAGTTCTAAACACGTA 59.536 41.667 6.96 0.00 0.00 3.57
2787 3315 4.565564 CCATGGCTAGTTCTAAACACGTAC 59.434 45.833 0.00 0.00 0.00 3.67
2788 3316 5.408356 CATGGCTAGTTCTAAACACGTACT 58.592 41.667 0.00 0.00 0.00 2.73
2789 3317 5.458041 TGGCTAGTTCTAAACACGTACTT 57.542 39.130 0.00 0.00 0.00 2.24
2790 3318 6.573664 TGGCTAGTTCTAAACACGTACTTA 57.426 37.500 0.00 0.00 0.00 2.24
2791 3319 6.381801 TGGCTAGTTCTAAACACGTACTTAC 58.618 40.000 0.00 0.00 0.00 2.34
2803 3331 3.959609 CGTACTTACGTGCAGTTTACC 57.040 47.619 7.46 0.00 44.13 2.85
2804 3332 3.568538 CGTACTTACGTGCAGTTTACCT 58.431 45.455 7.46 0.00 44.13 3.08
2805 3333 3.605486 CGTACTTACGTGCAGTTTACCTC 59.395 47.826 7.46 0.00 44.13 3.85
2806 3334 4.614535 CGTACTTACGTGCAGTTTACCTCT 60.615 45.833 7.46 0.00 44.13 3.69
2807 3335 3.910648 ACTTACGTGCAGTTTACCTCTC 58.089 45.455 0.00 0.00 0.00 3.20
2808 3336 3.573110 ACTTACGTGCAGTTTACCTCTCT 59.427 43.478 0.00 0.00 0.00 3.10
2809 3337 2.440539 ACGTGCAGTTTACCTCTCTG 57.559 50.000 0.00 0.00 0.00 3.35
2810 3338 1.961394 ACGTGCAGTTTACCTCTCTGA 59.039 47.619 0.00 0.00 0.00 3.27
2811 3339 2.364324 ACGTGCAGTTTACCTCTCTGAA 59.636 45.455 0.00 0.00 0.00 3.02
2812 3340 2.731976 CGTGCAGTTTACCTCTCTGAAC 59.268 50.000 0.00 0.00 35.18 3.18
2813 3341 3.728845 GTGCAGTTTACCTCTCTGAACA 58.271 45.455 0.00 0.00 37.60 3.18
2814 3342 4.319177 GTGCAGTTTACCTCTCTGAACAT 58.681 43.478 0.00 0.00 37.60 2.71
2815 3343 5.479306 GTGCAGTTTACCTCTCTGAACATA 58.521 41.667 0.00 0.00 37.60 2.29
2816 3344 6.109359 GTGCAGTTTACCTCTCTGAACATAT 58.891 40.000 0.00 0.00 37.60 1.78
2817 3345 7.265673 GTGCAGTTTACCTCTCTGAACATATA 58.734 38.462 0.00 0.00 37.60 0.86
2818 3346 7.222999 GTGCAGTTTACCTCTCTGAACATATAC 59.777 40.741 0.00 0.00 37.60 1.47
2819 3347 7.093509 TGCAGTTTACCTCTCTGAACATATACA 60.094 37.037 0.00 0.00 0.00 2.29
2820 3348 7.436673 GCAGTTTACCTCTCTGAACATATACAG 59.563 40.741 0.00 0.00 35.72 2.74
2821 3349 8.470805 CAGTTTACCTCTCTGAACATATACAGT 58.529 37.037 0.00 0.00 35.84 3.55
2822 3350 8.688151 AGTTTACCTCTCTGAACATATACAGTC 58.312 37.037 0.00 0.00 35.84 3.51
2823 3351 8.467598 GTTTACCTCTCTGAACATATACAGTCA 58.532 37.037 0.00 0.00 35.84 3.41
2824 3352 8.589701 TTACCTCTCTGAACATATACAGTCAA 57.410 34.615 0.00 0.00 35.84 3.18
2825 3353 6.868622 ACCTCTCTGAACATATACAGTCAAC 58.131 40.000 0.00 0.00 35.84 3.18
2826 3354 6.665680 ACCTCTCTGAACATATACAGTCAACT 59.334 38.462 0.00 0.00 35.84 3.16
2836 3364 3.319135 CAGTCAACTGCAGGAAGCT 57.681 52.632 19.93 7.94 45.94 3.74
2837 3365 0.873054 CAGTCAACTGCAGGAAGCTG 59.127 55.000 19.93 15.95 45.94 4.24
2838 3366 0.761187 AGTCAACTGCAGGAAGCTGA 59.239 50.000 19.93 9.38 44.15 4.26
2839 3367 1.141657 AGTCAACTGCAGGAAGCTGAA 59.858 47.619 19.93 0.00 44.15 3.02
2840 3368 1.534595 GTCAACTGCAGGAAGCTGAAG 59.465 52.381 19.93 0.00 44.15 3.02
2841 3369 0.240411 CAACTGCAGGAAGCTGAAGC 59.760 55.000 19.93 0.00 44.15 3.86
2842 3370 0.892814 AACTGCAGGAAGCTGAAGCC 60.893 55.000 19.93 0.00 44.15 4.35
2843 3371 1.303074 CTGCAGGAAGCTGAAGCCA 60.303 57.895 5.57 0.00 44.15 4.75
2844 3372 0.680280 CTGCAGGAAGCTGAAGCCAT 60.680 55.000 5.57 0.00 44.15 4.40
2845 3373 0.963856 TGCAGGAAGCTGAAGCCATG 60.964 55.000 0.00 0.00 45.94 3.66
2846 3374 1.664321 GCAGGAAGCTGAAGCCATGG 61.664 60.000 7.63 7.63 43.38 3.66
2847 3375 0.323178 CAGGAAGCTGAAGCCATGGT 60.323 55.000 14.67 0.00 43.38 3.55
2848 3376 0.323178 AGGAAGCTGAAGCCATGGTG 60.323 55.000 14.67 0.24 43.38 4.17
2849 3377 0.322816 GGAAGCTGAAGCCATGGTGA 60.323 55.000 14.67 0.00 43.38 4.02
2850 3378 1.684248 GGAAGCTGAAGCCATGGTGAT 60.684 52.381 14.67 0.00 43.38 3.06
2851 3379 1.674962 GAAGCTGAAGCCATGGTGATC 59.325 52.381 14.67 9.88 43.38 2.92
2852 3380 0.106819 AGCTGAAGCCATGGTGATCC 60.107 55.000 14.67 0.00 43.38 3.36
2853 3381 0.394762 GCTGAAGCCATGGTGATCCA 60.395 55.000 14.67 4.14 40.82 3.41
2854 3382 4.094319 AGCTGAAGCCATGGTGATCCAT 62.094 50.000 14.67 0.00 46.11 3.41
2855 3383 4.779987 AGCTGAAGCCATGGTGATCCATA 61.780 47.826 14.67 0.00 46.48 2.74
2856 3384 6.046374 AGCTGAAGCCATGGTGATCCATAT 62.046 45.833 14.67 0.00 46.48 1.78
2857 3385 6.757876 AGCTGAAGCCATGGTGATCCATATA 61.758 44.000 14.67 0.00 46.48 0.86
2858 3386 8.170191 AGCTGAAGCCATGGTGATCCATATAA 62.170 42.308 14.67 0.00 46.48 0.98
2859 3387 9.394204 AGCTGAAGCCATGGTGATCCATATAAT 62.394 40.741 14.67 0.00 46.48 1.28
2868 3396 6.815089 TGGTGATCCATATAATGTTTTTGGC 58.185 36.000 0.00 0.00 39.03 4.52
2869 3397 5.920273 GGTGATCCATATAATGTTTTTGGCG 59.080 40.000 0.00 0.00 0.00 5.69
2870 3398 6.460953 GGTGATCCATATAATGTTTTTGGCGT 60.461 38.462 0.00 0.00 0.00 5.68
2871 3399 7.255312 GGTGATCCATATAATGTTTTTGGCGTA 60.255 37.037 0.00 0.00 0.00 4.42
2872 3400 8.296713 GTGATCCATATAATGTTTTTGGCGTAT 58.703 33.333 0.00 0.00 0.00 3.06
2873 3401 8.511321 TGATCCATATAATGTTTTTGGCGTATC 58.489 33.333 0.00 0.00 0.00 2.24
2874 3402 8.635765 ATCCATATAATGTTTTTGGCGTATCT 57.364 30.769 0.00 0.00 0.00 1.98
2875 3403 8.458573 TCCATATAATGTTTTTGGCGTATCTT 57.541 30.769 0.00 0.00 0.00 2.40
2876 3404 8.908903 TCCATATAATGTTTTTGGCGTATCTTT 58.091 29.630 0.00 0.00 0.00 2.52
2881 3409 4.800784 TGTTTTTGGCGTATCTTTAAGGC 58.199 39.130 0.00 0.00 33.82 4.35
2882 3410 3.750639 TTTTGGCGTATCTTTAAGGCG 57.249 42.857 0.00 0.00 35.57 5.52
2883 3411 1.011333 TTGGCGTATCTTTAAGGCGC 58.989 50.000 16.15 16.15 46.24 6.53
2886 3414 2.086934 GCGTATCTTTAAGGCGCAAC 57.913 50.000 10.83 0.00 46.23 4.17
2887 3415 1.267882 GCGTATCTTTAAGGCGCAACC 60.268 52.381 10.83 0.00 46.23 3.77
2888 3416 1.005347 CGTATCTTTAAGGCGCAACCG 60.005 52.381 10.83 0.00 46.52 4.44
2889 3417 2.273557 GTATCTTTAAGGCGCAACCGA 58.726 47.619 10.83 0.00 46.52 4.69
2890 3418 1.816074 ATCTTTAAGGCGCAACCGAA 58.184 45.000 10.83 0.00 46.52 4.30
2891 3419 1.595466 TCTTTAAGGCGCAACCGAAA 58.405 45.000 10.83 0.76 46.52 3.46
2892 3420 1.533731 TCTTTAAGGCGCAACCGAAAG 59.466 47.619 10.83 11.04 46.52 2.62
2893 3421 0.039888 TTTAAGGCGCAACCGAAAGC 60.040 50.000 10.83 0.00 46.52 3.51
2894 3422 0.887387 TTAAGGCGCAACCGAAAGCT 60.887 50.000 10.83 0.00 46.52 3.74
2895 3423 1.573829 TAAGGCGCAACCGAAAGCTG 61.574 55.000 10.83 0.00 46.52 4.24
2897 3425 4.326766 GCGCAACCGAAAGCTGCA 62.327 61.111 0.30 0.00 38.03 4.41
2898 3426 2.331098 CGCAACCGAAAGCTGCAA 59.669 55.556 1.02 0.00 38.03 4.08
2899 3427 1.299014 CGCAACCGAAAGCTGCAAA 60.299 52.632 1.02 0.00 38.03 3.68
2900 3428 1.270777 CGCAACCGAAAGCTGCAAAG 61.271 55.000 1.02 0.00 38.03 2.77
2901 3429 0.249031 GCAACCGAAAGCTGCAAAGT 60.249 50.000 1.02 0.00 38.04 2.66
2902 3430 1.758783 CAACCGAAAGCTGCAAAGTC 58.241 50.000 1.02 0.00 0.00 3.01
2903 3431 1.065401 CAACCGAAAGCTGCAAAGTCA 59.935 47.619 1.02 0.00 0.00 3.41
2904 3432 1.609208 ACCGAAAGCTGCAAAGTCAT 58.391 45.000 1.02 0.00 0.00 3.06
2905 3433 2.778299 ACCGAAAGCTGCAAAGTCATA 58.222 42.857 1.02 0.00 0.00 2.15
2906 3434 3.146066 ACCGAAAGCTGCAAAGTCATAA 58.854 40.909 1.02 0.00 0.00 1.90
2907 3435 3.758554 ACCGAAAGCTGCAAAGTCATAAT 59.241 39.130 1.02 0.00 0.00 1.28
2908 3436 4.142600 ACCGAAAGCTGCAAAGTCATAATC 60.143 41.667 1.02 0.00 0.00 1.75
2909 3437 4.024438 CGAAAGCTGCAAAGTCATAATCG 58.976 43.478 1.02 0.00 0.00 3.34
2910 3438 4.201714 CGAAAGCTGCAAAGTCATAATCGA 60.202 41.667 1.02 0.00 0.00 3.59
2911 3439 4.606457 AAGCTGCAAAGTCATAATCGAC 57.394 40.909 1.02 0.00 36.08 4.20
2912 3440 3.599343 AGCTGCAAAGTCATAATCGACA 58.401 40.909 1.02 0.00 38.43 4.35
2913 3441 4.002982 AGCTGCAAAGTCATAATCGACAA 58.997 39.130 1.02 0.00 38.43 3.18
2914 3442 4.455533 AGCTGCAAAGTCATAATCGACAAA 59.544 37.500 1.02 0.00 38.43 2.83
2915 3443 4.554973 GCTGCAAAGTCATAATCGACAAAC 59.445 41.667 0.00 0.00 38.43 2.93
2916 3444 5.617751 GCTGCAAAGTCATAATCGACAAACT 60.618 40.000 0.00 0.00 38.43 2.66
2917 3445 6.312399 TGCAAAGTCATAATCGACAAACTT 57.688 33.333 0.00 0.00 38.43 2.66
2918 3446 6.142139 TGCAAAGTCATAATCGACAAACTTG 58.858 36.000 0.00 0.00 38.43 3.16
2919 3447 6.142817 GCAAAGTCATAATCGACAAACTTGT 58.857 36.000 0.00 0.00 45.65 3.16
2920 3448 7.041712 TGCAAAGTCATAATCGACAAACTTGTA 60.042 33.333 0.00 0.00 42.43 2.41
2921 3449 7.268447 GCAAAGTCATAATCGACAAACTTGTAC 59.732 37.037 0.00 0.00 42.43 2.90
2922 3450 7.956420 AAGTCATAATCGACAAACTTGTACA 57.044 32.000 0.00 0.00 42.43 2.90
2923 3451 7.347508 AGTCATAATCGACAAACTTGTACAC 57.652 36.000 0.00 0.00 42.43 2.90
2924 3452 6.926826 AGTCATAATCGACAAACTTGTACACA 59.073 34.615 0.00 0.00 42.43 3.72
2925 3453 7.602644 AGTCATAATCGACAAACTTGTACACAT 59.397 33.333 0.00 0.00 42.43 3.21
2926 3454 8.227791 GTCATAATCGACAAACTTGTACACATT 58.772 33.333 0.00 0.00 42.43 2.71
2927 3455 8.227119 TCATAATCGACAAACTTGTACACATTG 58.773 33.333 0.00 4.02 42.43 2.82
2928 3456 6.612247 AATCGACAAACTTGTACACATTGA 57.388 33.333 16.95 1.66 42.43 2.57
2929 3457 6.612247 ATCGACAAACTTGTACACATTGAA 57.388 33.333 16.95 6.50 42.43 2.69
2930 3458 6.043327 TCGACAAACTTGTACACATTGAAG 57.957 37.500 16.95 5.24 42.43 3.02
2931 3459 4.670621 CGACAAACTTGTACACATTGAAGC 59.329 41.667 16.95 8.14 42.43 3.86
2932 3460 5.574891 ACAAACTTGTACACATTGAAGCA 57.425 34.783 16.95 0.00 40.16 3.91
2933 3461 5.960113 ACAAACTTGTACACATTGAAGCAA 58.040 33.333 16.95 0.00 40.16 3.91
2934 3462 6.035843 ACAAACTTGTACACATTGAAGCAAG 58.964 36.000 16.95 0.00 40.16 4.01
2935 3463 5.835113 AACTTGTACACATTGAAGCAAGT 57.165 34.783 0.00 0.00 45.43 3.16
2936 3464 5.835113 ACTTGTACACATTGAAGCAAGTT 57.165 34.783 0.00 0.00 42.29 2.66
2937 3465 5.821204 ACTTGTACACATTGAAGCAAGTTC 58.179 37.500 0.00 0.00 42.29 3.01
2938 3466 4.466567 TGTACACATTGAAGCAAGTTCG 57.533 40.909 0.00 0.00 38.09 3.95
2939 3467 4.123506 TGTACACATTGAAGCAAGTTCGA 58.876 39.130 0.00 0.00 38.09 3.71
2940 3468 4.754618 TGTACACATTGAAGCAAGTTCGAT 59.245 37.500 0.00 0.00 39.58 3.59
2941 3469 5.929415 TGTACACATTGAAGCAAGTTCGATA 59.071 36.000 0.00 0.00 37.19 2.92
2942 3470 6.593770 TGTACACATTGAAGCAAGTTCGATAT 59.406 34.615 0.00 0.00 37.19 1.63
2943 3471 7.762159 TGTACACATTGAAGCAAGTTCGATATA 59.238 33.333 0.00 0.00 37.19 0.86
2944 3472 7.792374 ACACATTGAAGCAAGTTCGATATAT 57.208 32.000 0.00 0.00 37.19 0.86
2945 3473 8.213518 ACACATTGAAGCAAGTTCGATATATT 57.786 30.769 0.00 0.00 37.19 1.28
2946 3474 8.677300 ACACATTGAAGCAAGTTCGATATATTT 58.323 29.630 0.00 0.00 37.19 1.40
2959 3487 8.770828 AGTTCGATATATTTACATTCAAACCGG 58.229 33.333 0.00 0.00 0.00 5.28
2960 3488 8.553696 GTTCGATATATTTACATTCAAACCGGT 58.446 33.333 0.00 0.00 0.00 5.28
2961 3489 8.301730 TCGATATATTTACATTCAAACCGGTC 57.698 34.615 8.04 0.00 0.00 4.79
2962 3490 7.115236 TCGATATATTTACATTCAAACCGGTCG 59.885 37.037 8.04 1.70 0.00 4.79
2963 3491 7.115236 CGATATATTTACATTCAAACCGGTCGA 59.885 37.037 8.04 4.77 0.00 4.20
2964 3492 8.842358 ATATATTTACATTCAAACCGGTCGAT 57.158 30.769 8.04 0.00 0.00 3.59
2965 3493 9.932207 ATATATTTACATTCAAACCGGTCGATA 57.068 29.630 8.04 0.00 0.00 2.92
2966 3494 8.842358 ATATTTACATTCAAACCGGTCGATAT 57.158 30.769 8.04 0.00 0.00 1.63
2967 3495 6.988622 TTTACATTCAAACCGGTCGATATT 57.011 33.333 8.04 0.00 0.00 1.28
2968 3496 6.988622 TTACATTCAAACCGGTCGATATTT 57.011 33.333 8.04 0.00 0.00 1.40
2969 3497 8.489990 TTTACATTCAAACCGGTCGATATTTA 57.510 30.769 8.04 0.00 0.00 1.40
2970 3498 6.988622 ACATTCAAACCGGTCGATATTTAA 57.011 33.333 8.04 0.00 0.00 1.52
2971 3499 6.778108 ACATTCAAACCGGTCGATATTTAAC 58.222 36.000 8.04 0.00 0.00 2.01
2972 3500 6.372103 ACATTCAAACCGGTCGATATTTAACA 59.628 34.615 8.04 0.00 0.00 2.41
2973 3501 6.798315 TTCAAACCGGTCGATATTTAACAA 57.202 33.333 8.04 0.00 0.00 2.83
2974 3502 6.411630 TCAAACCGGTCGATATTTAACAAG 57.588 37.500 8.04 0.00 0.00 3.16
2975 3503 5.933463 TCAAACCGGTCGATATTTAACAAGT 59.067 36.000 8.04 0.00 0.00 3.16
2976 3504 6.427547 TCAAACCGGTCGATATTTAACAAGTT 59.572 34.615 8.04 0.00 0.00 2.66
2977 3505 6.413018 AACCGGTCGATATTTAACAAGTTC 57.587 37.500 8.04 0.00 0.00 3.01
2978 3506 5.481105 ACCGGTCGATATTTAACAAGTTCA 58.519 37.500 0.00 0.00 0.00 3.18
2979 3507 5.933463 ACCGGTCGATATTTAACAAGTTCAA 59.067 36.000 0.00 0.00 0.00 2.69
2980 3508 6.596497 ACCGGTCGATATTTAACAAGTTCAAT 59.404 34.615 0.00 0.00 0.00 2.57
2981 3509 7.120138 ACCGGTCGATATTTAACAAGTTCAATT 59.880 33.333 0.00 0.00 0.00 2.32
2982 3510 8.605746 CCGGTCGATATTTAACAAGTTCAATTA 58.394 33.333 0.00 0.00 0.00 1.40
2983 3511 9.976255 CGGTCGATATTTAACAAGTTCAATTAA 57.024 29.630 0.00 0.00 0.00 1.40
3018 3546 7.586714 AACCTAAAAGAAATACTACGAACCG 57.413 36.000 0.00 0.00 0.00 4.44
3019 3547 6.691508 ACCTAAAAGAAATACTACGAACCGT 58.308 36.000 0.00 0.00 44.35 4.83
3020 3548 7.826690 ACCTAAAAGAAATACTACGAACCGTA 58.173 34.615 0.00 0.00 41.54 4.02
3021 3549 8.303876 ACCTAAAAGAAATACTACGAACCGTAA 58.696 33.333 0.00 0.00 41.82 3.18
3022 3550 8.587111 CCTAAAAGAAATACTACGAACCGTAAC 58.413 37.037 0.00 0.00 41.82 2.50
3023 3551 6.951256 AAAGAAATACTACGAACCGTAACC 57.049 37.500 0.00 0.00 41.82 2.85
3024 3552 5.904362 AGAAATACTACGAACCGTAACCT 57.096 39.130 0.00 0.00 41.82 3.50
3025 3553 5.884771 AGAAATACTACGAACCGTAACCTC 58.115 41.667 0.00 0.00 41.82 3.85
3026 3554 5.415701 AGAAATACTACGAACCGTAACCTCA 59.584 40.000 0.00 0.00 41.82 3.86
3027 3555 2.997485 ACTACGAACCGTAACCTCAC 57.003 50.000 0.00 0.00 41.82 3.51
3028 3556 2.229792 ACTACGAACCGTAACCTCACA 58.770 47.619 0.00 0.00 41.82 3.58
3029 3557 2.821969 ACTACGAACCGTAACCTCACAT 59.178 45.455 0.00 0.00 41.82 3.21
3030 3558 2.825861 ACGAACCGTAACCTCACATT 57.174 45.000 0.00 0.00 38.73 2.71
3031 3559 3.116079 ACGAACCGTAACCTCACATTT 57.884 42.857 0.00 0.00 38.73 2.32
3032 3560 4.255833 ACGAACCGTAACCTCACATTTA 57.744 40.909 0.00 0.00 38.73 1.40
3033 3561 4.240096 ACGAACCGTAACCTCACATTTAG 58.760 43.478 0.00 0.00 38.73 1.85
3034 3562 3.615496 CGAACCGTAACCTCACATTTAGG 59.385 47.826 0.00 0.00 40.20 2.69
3035 3563 3.622166 ACCGTAACCTCACATTTAGGG 57.378 47.619 0.00 0.00 38.54 3.53
3036 3564 2.285977 CCGTAACCTCACATTTAGGGC 58.714 52.381 0.00 0.00 38.54 5.19
3037 3565 2.285977 CGTAACCTCACATTTAGGGCC 58.714 52.381 0.00 0.00 38.54 5.80
3038 3566 2.093128 CGTAACCTCACATTTAGGGCCT 60.093 50.000 12.58 12.58 38.54 5.19
3039 3567 2.808906 AACCTCACATTTAGGGCCTC 57.191 50.000 10.74 0.00 38.54 4.70
3040 3568 0.919710 ACCTCACATTTAGGGCCTCC 59.080 55.000 10.74 0.00 38.54 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
187 188 6.945938 TTTATCCGAACTTTCCAAAACTGA 57.054 33.333 0.00 0.00 0.00 3.41
283 284 5.026038 TGGACTTTCCGTACAAGAAAAGA 57.974 39.130 8.83 0.00 40.17 2.52
298 299 0.912486 ATAAGAGGCGGCTGGACTTT 59.088 50.000 19.63 5.40 29.96 2.66
318 319 0.609681 GGCCGTCACCCCAAACATAA 60.610 55.000 0.00 0.00 0.00 1.90
325 326 4.402528 CAATCGGCCGTCACCCCA 62.403 66.667 27.15 3.40 0.00 4.96
408 410 3.555917 AACGAACGAAGAACGAGAGAT 57.444 42.857 0.14 0.00 45.77 2.75
581 590 1.900498 ACGTCGAAGGAGACCCGTT 60.900 57.895 0.00 0.00 37.85 4.44
728 737 3.655810 GACTCCTCCGTGCAGCTGG 62.656 68.421 17.12 0.00 0.00 4.85
1023 1044 1.653094 CTTCGAGGCAGAGCGTCTCT 61.653 60.000 9.59 3.88 42.11 3.10
1097 1119 1.539065 CCAAGAAGGACCCGATGATCG 60.539 57.143 8.05 8.05 41.22 3.69
1257 1291 1.519455 CTCCAGGACGTGATTCCGC 60.519 63.158 0.00 0.00 41.04 5.54
1308 1347 6.316390 ACAGTCTCCGAACAAATGGAAATATC 59.684 38.462 0.00 0.00 32.89 1.63
1309 1348 6.180472 ACAGTCTCCGAACAAATGGAAATAT 58.820 36.000 0.00 0.00 32.89 1.28
1310 1349 5.556915 ACAGTCTCCGAACAAATGGAAATA 58.443 37.500 0.00 0.00 32.89 1.40
1311 1350 4.398319 ACAGTCTCCGAACAAATGGAAAT 58.602 39.130 0.00 0.00 32.89 2.17
1352 1412 9.140286 GCAACCAAATTATTAAGAGAGGAAAAC 57.860 33.333 0.00 0.00 0.00 2.43
1533 1618 0.912486 AGGGCCTCACCTTGATGTAC 59.088 55.000 0.00 0.00 37.69 2.90
1933 2117 3.931907 ATAGCCAGTGACCAGCATTAA 57.068 42.857 0.00 0.00 0.00 1.40
1963 2147 2.561858 ACCCTCTCTTGTAACGTCCTTC 59.438 50.000 0.00 0.00 0.00 3.46
2031 2215 0.525761 TGCGGCTTCATTACTTTGCC 59.474 50.000 0.00 0.00 40.14 4.52
2037 2221 1.135689 CACCTGTTGCGGCTTCATTAC 60.136 52.381 0.00 0.00 0.00 1.89
2040 2224 2.629656 GCACCTGTTGCGGCTTCAT 61.630 57.895 0.00 0.00 42.79 2.57
2088 2272 2.567169 CAGACCACAGGAACAGGACATA 59.433 50.000 0.00 0.00 0.00 2.29
2160 2350 5.348724 GCTAATCATGAAACAAGAGTCGACA 59.651 40.000 19.50 0.00 0.00 4.35
2174 2364 6.239217 ACTTGGACACATAGCTAATCATGA 57.761 37.500 0.00 0.00 0.00 3.07
2210 2420 9.948964 TCAATACTTCAGTACTGTACTACTGTA 57.051 33.333 21.99 19.09 42.93 2.74
2211 2421 8.859236 TCAATACTTCAGTACTGTACTACTGT 57.141 34.615 21.99 17.85 42.93 3.55
2212 2422 9.938670 GATCAATACTTCAGTACTGTACTACTG 57.061 37.037 21.99 11.03 43.51 2.74
2213 2423 9.908747 AGATCAATACTTCAGTACTGTACTACT 57.091 33.333 21.99 0.00 37.23 2.57
2217 2427 7.644551 CCGAAGATCAATACTTCAGTACTGTAC 59.355 40.741 21.99 9.93 42.39 2.90
2218 2428 7.338703 ACCGAAGATCAATACTTCAGTACTGTA 59.661 37.037 21.99 12.28 42.39 2.74
2220 2430 6.565234 ACCGAAGATCAATACTTCAGTACTG 58.435 40.000 17.17 17.17 42.39 2.74
2221 2431 6.777213 ACCGAAGATCAATACTTCAGTACT 57.223 37.500 0.00 0.00 42.39 2.73
2222 2432 6.255887 CCAACCGAAGATCAATACTTCAGTAC 59.744 42.308 0.00 0.00 42.39 2.73
2224 2434 5.178797 CCAACCGAAGATCAATACTTCAGT 58.821 41.667 0.00 0.00 42.39 3.41
2225 2435 4.034510 GCCAACCGAAGATCAATACTTCAG 59.965 45.833 0.00 0.00 42.39 3.02
2228 2438 3.941483 CTGCCAACCGAAGATCAATACTT 59.059 43.478 0.00 0.00 0.00 2.24
2230 2440 3.270877 ACTGCCAACCGAAGATCAATAC 58.729 45.455 0.00 0.00 0.00 1.89
2231 2441 3.055458 TGACTGCCAACCGAAGATCAATA 60.055 43.478 0.00 0.00 0.00 1.90
2250 2476 0.611340 AGGGTACAGAGGTCCGTGAC 60.611 60.000 0.00 0.00 0.00 3.67
2267 2493 3.125316 CAAGGCAAACATGAAACACAGG 58.875 45.455 0.00 0.00 36.29 4.00
2280 2506 2.655090 TGTCATCAGACCAAGGCAAA 57.345 45.000 0.00 0.00 44.33 3.68
2285 2511 3.683340 CACTGTCATGTCATCAGACCAAG 59.317 47.826 8.19 0.64 44.33 3.61
2286 2512 3.557686 CCACTGTCATGTCATCAGACCAA 60.558 47.826 8.19 0.00 44.33 3.67
2335 2561 1.540267 CCTGCATCAAGCCTCATATGC 59.460 52.381 0.00 0.00 44.83 3.14
2363 2589 9.420118 ACTTTATTTCCATGTTAATGCATAGGA 57.580 29.630 0.00 0.00 31.93 2.94
2367 2593 8.761689 AGGAACTTTATTTCCATGTTAATGCAT 58.238 29.630 0.00 0.00 46.76 3.96
2388 2614 1.527433 GCAACCAGCTGGGAAGGAAC 61.527 60.000 35.42 14.13 41.15 3.62
2406 2632 0.104671 ACAACCACAGCACAATTGGC 59.895 50.000 10.83 10.34 33.25 4.52
2410 2636 0.102844 GCACACAACCACAGCACAAT 59.897 50.000 0.00 0.00 0.00 2.71
2443 2949 3.600388 ACTGTTTTAGAAGGAGATGCCG 58.400 45.455 0.00 0.00 43.43 5.69
2466 2972 5.934781 AGGTGCTAGAATCTAAAAGATGGG 58.065 41.667 0.00 0.00 34.65 4.00
2506 3012 7.347252 AGACATAGTAGACTGAAGGTGTGATA 58.653 38.462 0.00 0.00 0.00 2.15
2526 3032 1.208165 GGGGGTGGACTTGGAGACAT 61.208 60.000 0.00 0.00 42.32 3.06
2534 3040 0.697854 ACTGACAAGGGGGTGGACTT 60.698 55.000 0.00 0.00 0.00 3.01
2535 3041 0.697854 AACTGACAAGGGGGTGGACT 60.698 55.000 0.00 0.00 0.00 3.85
2536 3042 0.185175 AAACTGACAAGGGGGTGGAC 59.815 55.000 0.00 0.00 0.00 4.02
2537 3043 0.930726 AAAACTGACAAGGGGGTGGA 59.069 50.000 0.00 0.00 0.00 4.02
2538 3044 1.686587 GAAAAACTGACAAGGGGGTGG 59.313 52.381 0.00 0.00 0.00 4.61
2539 3045 2.623416 GAGAAAAACTGACAAGGGGGTG 59.377 50.000 0.00 0.00 0.00 4.61
2540 3046 2.424379 GGAGAAAAACTGACAAGGGGGT 60.424 50.000 0.00 0.00 0.00 4.95
2545 3068 5.284079 CAACCATGGAGAAAAACTGACAAG 58.716 41.667 21.47 0.00 0.00 3.16
2617 3145 9.531942 TTACGATGTTTGTCTCTTTGTTAGTAA 57.468 29.630 0.00 0.00 0.00 2.24
2622 3150 6.492254 GGTTTACGATGTTTGTCTCTTTGTT 58.508 36.000 0.00 0.00 0.00 2.83
2640 3168 4.370917 TCACCTAAACTGACACGGTTTAC 58.629 43.478 10.57 0.00 42.15 2.01
2652 3180 2.487265 CCCTGTGTGCTTCACCTAAACT 60.487 50.000 9.37 0.00 45.61 2.66
2662 3190 2.085343 AATGAGCCCCCTGTGTGCTT 62.085 55.000 0.00 0.00 34.99 3.91
2663 3191 2.085343 AAATGAGCCCCCTGTGTGCT 62.085 55.000 0.00 0.00 38.24 4.40
2664 3192 1.607467 AAATGAGCCCCCTGTGTGC 60.607 57.895 0.00 0.00 0.00 4.57
2665 3193 0.540365 ACAAATGAGCCCCCTGTGTG 60.540 55.000 0.00 0.00 0.00 3.82
2666 3194 1.072266 TACAAATGAGCCCCCTGTGT 58.928 50.000 0.00 0.00 0.00 3.72
2667 3195 1.004745 AGTACAAATGAGCCCCCTGTG 59.995 52.381 0.00 0.00 0.00 3.66
2668 3196 1.372501 AGTACAAATGAGCCCCCTGT 58.627 50.000 0.00 0.00 0.00 4.00
2669 3197 2.741878 CGTAGTACAAATGAGCCCCCTG 60.742 54.545 0.38 0.00 0.00 4.45
2670 3198 1.485066 CGTAGTACAAATGAGCCCCCT 59.515 52.381 0.38 0.00 0.00 4.79
2671 3199 1.483415 TCGTAGTACAAATGAGCCCCC 59.517 52.381 0.38 0.00 0.00 5.40
2672 3200 2.167900 ACTCGTAGTACAAATGAGCCCC 59.832 50.000 14.25 0.00 34.00 5.80
2673 3201 3.521947 ACTCGTAGTACAAATGAGCCC 57.478 47.619 14.25 0.00 34.00 5.19
2674 3202 5.246145 ACTACTCGTAGTACAAATGAGCC 57.754 43.478 7.91 0.00 43.98 4.70
2686 3214 7.861372 CCATGATGGTTTAACTACTACTCGTAG 59.139 40.741 2.54 2.66 41.06 3.51
2687 3215 7.557358 TCCATGATGGTTTAACTACTACTCGTA 59.443 37.037 11.87 0.00 39.03 3.43
2688 3216 6.379133 TCCATGATGGTTTAACTACTACTCGT 59.621 38.462 11.87 0.00 39.03 4.18
2689 3217 6.802608 TCCATGATGGTTTAACTACTACTCG 58.197 40.000 11.87 0.00 39.03 4.18
2690 3218 6.702282 GCTCCATGATGGTTTAACTACTACTC 59.298 42.308 11.87 0.00 39.03 2.59
2691 3219 6.156256 TGCTCCATGATGGTTTAACTACTACT 59.844 38.462 11.87 0.00 39.03 2.57
2692 3220 6.346096 TGCTCCATGATGGTTTAACTACTAC 58.654 40.000 11.87 0.00 39.03 2.73
2693 3221 6.553953 TGCTCCATGATGGTTTAACTACTA 57.446 37.500 11.87 0.00 39.03 1.82
2694 3222 5.435686 TGCTCCATGATGGTTTAACTACT 57.564 39.130 11.87 0.00 39.03 2.57
2695 3223 5.822519 TGATGCTCCATGATGGTTTAACTAC 59.177 40.000 11.87 0.00 39.03 2.73
2696 3224 5.822519 GTGATGCTCCATGATGGTTTAACTA 59.177 40.000 11.87 0.00 39.03 2.24
2697 3225 4.641989 GTGATGCTCCATGATGGTTTAACT 59.358 41.667 11.87 0.00 39.03 2.24
2698 3226 4.641989 AGTGATGCTCCATGATGGTTTAAC 59.358 41.667 11.87 4.32 39.03 2.01
2699 3227 4.641541 CAGTGATGCTCCATGATGGTTTAA 59.358 41.667 11.87 0.00 39.03 1.52
2700 3228 4.201657 CAGTGATGCTCCATGATGGTTTA 58.798 43.478 11.87 0.00 39.03 2.01
2701 3229 3.021695 CAGTGATGCTCCATGATGGTTT 58.978 45.455 11.87 0.00 39.03 3.27
2702 3230 2.651455 CAGTGATGCTCCATGATGGTT 58.349 47.619 11.87 0.00 39.03 3.67
2703 3231 1.749635 GCAGTGATGCTCCATGATGGT 60.750 52.381 11.87 0.00 39.03 3.55
2704 3232 0.952280 GCAGTGATGCTCCATGATGG 59.048 55.000 4.74 4.74 39.43 3.51
2705 3233 0.952280 GGCAGTGATGCTCCATGATG 59.048 55.000 0.00 0.00 34.73 3.07
2706 3234 0.844660 AGGCAGTGATGCTCCATGAT 59.155 50.000 0.00 0.00 34.73 2.45
2707 3235 1.499368 TAGGCAGTGATGCTCCATGA 58.501 50.000 0.00 0.00 34.73 3.07
2708 3236 2.219458 CTTAGGCAGTGATGCTCCATG 58.781 52.381 0.00 0.00 34.73 3.66
2709 3237 1.142465 CCTTAGGCAGTGATGCTCCAT 59.858 52.381 0.00 0.00 34.73 3.41
2710 3238 0.543277 CCTTAGGCAGTGATGCTCCA 59.457 55.000 0.00 0.00 34.73 3.86
2711 3239 0.179034 CCCTTAGGCAGTGATGCTCC 60.179 60.000 0.00 0.00 34.73 4.70
2712 3240 3.393472 CCCTTAGGCAGTGATGCTC 57.607 57.895 0.00 0.00 34.73 4.26
2723 3251 2.494073 GTCTCTATCGGATGCCCTTAGG 59.506 54.545 0.00 0.00 0.00 2.69
2724 3252 2.494073 GGTCTCTATCGGATGCCCTTAG 59.506 54.545 0.00 0.00 0.00 2.18
2725 3253 2.526432 GGTCTCTATCGGATGCCCTTA 58.474 52.381 0.00 0.00 0.00 2.69
2726 3254 1.343069 GGTCTCTATCGGATGCCCTT 58.657 55.000 0.00 0.00 0.00 3.95
2727 3255 0.896019 CGGTCTCTATCGGATGCCCT 60.896 60.000 0.00 0.00 0.00 5.19
2728 3256 1.179814 ACGGTCTCTATCGGATGCCC 61.180 60.000 0.00 0.00 31.84 5.36
2729 3257 0.039074 CACGGTCTCTATCGGATGCC 60.039 60.000 0.00 0.00 31.84 4.40
2730 3258 0.952280 TCACGGTCTCTATCGGATGC 59.048 55.000 0.00 0.00 31.84 3.91
2731 3259 2.357952 TGTTCACGGTCTCTATCGGATG 59.642 50.000 0.00 0.00 31.84 3.51
2732 3260 2.651455 TGTTCACGGTCTCTATCGGAT 58.349 47.619 0.00 0.00 31.84 4.18
2733 3261 2.118313 TGTTCACGGTCTCTATCGGA 57.882 50.000 0.00 0.00 31.84 4.55
2734 3262 2.094906 TGTTGTTCACGGTCTCTATCGG 60.095 50.000 0.00 0.00 31.84 4.18
2735 3263 3.211803 TGTTGTTCACGGTCTCTATCG 57.788 47.619 0.00 0.00 34.56 2.92
2736 3264 5.333875 GGTTTTGTTGTTCACGGTCTCTATC 60.334 44.000 0.00 0.00 0.00 2.08
2737 3265 4.514066 GGTTTTGTTGTTCACGGTCTCTAT 59.486 41.667 0.00 0.00 0.00 1.98
2738 3266 3.872771 GGTTTTGTTGTTCACGGTCTCTA 59.127 43.478 0.00 0.00 0.00 2.43
2739 3267 2.681344 GGTTTTGTTGTTCACGGTCTCT 59.319 45.455 0.00 0.00 0.00 3.10
2740 3268 2.420722 TGGTTTTGTTGTTCACGGTCTC 59.579 45.455 0.00 0.00 0.00 3.36
2741 3269 2.438411 TGGTTTTGTTGTTCACGGTCT 58.562 42.857 0.00 0.00 0.00 3.85
2742 3270 2.923605 TGGTTTTGTTGTTCACGGTC 57.076 45.000 0.00 0.00 0.00 4.79
2743 3271 3.429684 GGAATGGTTTTGTTGTTCACGGT 60.430 43.478 0.00 0.00 0.00 4.83
2744 3272 3.120041 GGAATGGTTTTGTTGTTCACGG 58.880 45.455 0.00 0.00 0.00 4.94
2745 3273 3.775202 TGGAATGGTTTTGTTGTTCACG 58.225 40.909 0.00 0.00 0.00 4.35
2746 3274 5.655893 CATGGAATGGTTTTGTTGTTCAC 57.344 39.130 0.00 0.00 41.79 3.18
2760 3288 5.220662 CGTGTTTAGAACTAGCCATGGAATG 60.221 44.000 18.40 6.33 46.21 2.67
2761 3289 4.876107 CGTGTTTAGAACTAGCCATGGAAT 59.124 41.667 18.40 5.40 0.00 3.01
2762 3290 4.250464 CGTGTTTAGAACTAGCCATGGAA 58.750 43.478 18.40 0.69 0.00 3.53
2763 3291 3.259876 ACGTGTTTAGAACTAGCCATGGA 59.740 43.478 18.40 0.00 0.00 3.41
2764 3292 3.596214 ACGTGTTTAGAACTAGCCATGG 58.404 45.455 7.63 7.63 0.00 3.66
2765 3293 5.408356 AGTACGTGTTTAGAACTAGCCATG 58.592 41.667 0.00 0.00 0.00 3.66
2766 3294 5.656213 AGTACGTGTTTAGAACTAGCCAT 57.344 39.130 0.00 0.00 0.00 4.40
2767 3295 5.458041 AAGTACGTGTTTAGAACTAGCCA 57.542 39.130 0.00 0.00 0.00 4.75
2768 3296 5.509622 CGTAAGTACGTGTTTAGAACTAGCC 59.490 44.000 0.00 0.00 44.13 3.93
2769 3297 6.531770 CGTAAGTACGTGTTTAGAACTAGC 57.468 41.667 0.00 0.00 44.13 3.42
2788 3316 3.570975 TCAGAGAGGTAAACTGCACGTAA 59.429 43.478 0.00 0.00 0.00 3.18
2789 3317 3.151554 TCAGAGAGGTAAACTGCACGTA 58.848 45.455 0.00 0.00 0.00 3.57
2790 3318 1.961394 TCAGAGAGGTAAACTGCACGT 59.039 47.619 0.00 0.00 0.00 4.49
2791 3319 2.724977 TCAGAGAGGTAAACTGCACG 57.275 50.000 0.00 0.00 0.00 5.34
2792 3320 3.728845 TGTTCAGAGAGGTAAACTGCAC 58.271 45.455 0.00 0.00 0.00 4.57
2793 3321 4.623932 ATGTTCAGAGAGGTAAACTGCA 57.376 40.909 0.00 0.00 0.00 4.41
2794 3322 7.265673 TGTATATGTTCAGAGAGGTAAACTGC 58.734 38.462 0.00 0.00 0.00 4.40
2795 3323 8.470805 ACTGTATATGTTCAGAGAGGTAAACTG 58.529 37.037 3.12 0.00 35.84 3.16
2796 3324 8.596781 ACTGTATATGTTCAGAGAGGTAAACT 57.403 34.615 3.12 0.00 35.84 2.66
2797 3325 8.467598 TGACTGTATATGTTCAGAGAGGTAAAC 58.532 37.037 3.12 0.00 35.84 2.01
2798 3326 8.589701 TGACTGTATATGTTCAGAGAGGTAAA 57.410 34.615 3.12 0.00 35.84 2.01
2799 3327 8.467598 GTTGACTGTATATGTTCAGAGAGGTAA 58.532 37.037 3.12 0.00 35.84 2.85
2800 3328 7.834681 AGTTGACTGTATATGTTCAGAGAGGTA 59.165 37.037 3.12 0.00 35.84 3.08
2801 3329 6.665680 AGTTGACTGTATATGTTCAGAGAGGT 59.334 38.462 3.12 0.00 35.84 3.85
2802 3330 6.977502 CAGTTGACTGTATATGTTCAGAGAGG 59.022 42.308 3.12 0.00 39.09 3.69
2803 3331 6.475076 GCAGTTGACTGTATATGTTCAGAGAG 59.525 42.308 12.32 0.00 45.45 3.20
2804 3332 6.071391 TGCAGTTGACTGTATATGTTCAGAGA 60.071 38.462 12.32 0.00 45.45 3.10
2805 3333 6.101997 TGCAGTTGACTGTATATGTTCAGAG 58.898 40.000 12.32 0.00 45.45 3.35
2806 3334 6.036577 TGCAGTTGACTGTATATGTTCAGA 57.963 37.500 12.32 0.00 45.45 3.27
2807 3335 5.292834 CCTGCAGTTGACTGTATATGTTCAG 59.707 44.000 13.81 8.12 45.45 3.02
2808 3336 5.046663 TCCTGCAGTTGACTGTATATGTTCA 60.047 40.000 13.81 0.00 45.45 3.18
2809 3337 5.419542 TCCTGCAGTTGACTGTATATGTTC 58.580 41.667 13.81 0.00 45.45 3.18
2810 3338 5.420725 TCCTGCAGTTGACTGTATATGTT 57.579 39.130 13.81 0.00 45.45 2.71
2811 3339 5.420725 TTCCTGCAGTTGACTGTATATGT 57.579 39.130 13.81 0.00 45.45 2.29
2812 3340 4.272018 GCTTCCTGCAGTTGACTGTATATG 59.728 45.833 13.81 4.02 45.45 1.78
2813 3341 4.163078 AGCTTCCTGCAGTTGACTGTATAT 59.837 41.667 13.81 0.00 45.45 0.86
2814 3342 3.515502 AGCTTCCTGCAGTTGACTGTATA 59.484 43.478 13.81 0.00 45.45 1.47
2815 3343 2.304180 AGCTTCCTGCAGTTGACTGTAT 59.696 45.455 13.81 0.00 45.45 2.29
2816 3344 1.694150 AGCTTCCTGCAGTTGACTGTA 59.306 47.619 13.81 7.31 45.45 2.74
2817 3345 0.471617 AGCTTCCTGCAGTTGACTGT 59.528 50.000 13.81 0.00 45.45 3.55
2818 3346 0.873054 CAGCTTCCTGCAGTTGACTG 59.127 55.000 13.81 10.90 45.94 3.51
2819 3347 0.761187 TCAGCTTCCTGCAGTTGACT 59.239 50.000 13.81 1.70 45.94 3.41
2820 3348 1.534595 CTTCAGCTTCCTGCAGTTGAC 59.465 52.381 13.81 0.00 45.94 3.18
2821 3349 1.888215 CTTCAGCTTCCTGCAGTTGA 58.112 50.000 13.81 0.01 45.94 3.18
2822 3350 0.240411 GCTTCAGCTTCCTGCAGTTG 59.760 55.000 13.81 3.22 45.94 3.16
2823 3351 0.892814 GGCTTCAGCTTCCTGCAGTT 60.893 55.000 13.81 0.00 45.94 3.16
2824 3352 1.303155 GGCTTCAGCTTCCTGCAGT 60.303 57.895 13.81 0.00 45.94 4.40
2825 3353 0.680280 ATGGCTTCAGCTTCCTGCAG 60.680 55.000 6.78 6.78 45.94 4.41
2826 3354 0.963856 CATGGCTTCAGCTTCCTGCA 60.964 55.000 0.00 0.00 45.94 4.41
2827 3355 1.664321 CCATGGCTTCAGCTTCCTGC 61.664 60.000 0.00 0.00 41.70 4.85
2828 3356 0.323178 ACCATGGCTTCAGCTTCCTG 60.323 55.000 13.04 0.00 41.70 3.86
2829 3357 0.323178 CACCATGGCTTCAGCTTCCT 60.323 55.000 13.04 0.00 41.70 3.36
2830 3358 0.322816 TCACCATGGCTTCAGCTTCC 60.323 55.000 13.04 0.00 41.70 3.46
2831 3359 1.674962 GATCACCATGGCTTCAGCTTC 59.325 52.381 13.04 0.00 41.70 3.86
2832 3360 1.684248 GGATCACCATGGCTTCAGCTT 60.684 52.381 13.04 0.00 37.39 3.74
2833 3361 0.106819 GGATCACCATGGCTTCAGCT 60.107 55.000 13.04 0.00 37.39 4.24
2834 3362 0.394762 TGGATCACCATGGCTTCAGC 60.395 55.000 13.04 0.00 41.77 4.26
2835 3363 3.888424 TGGATCACCATGGCTTCAG 57.112 52.632 13.04 0.00 41.77 3.02
2845 3373 5.920273 CGCCAAAAACATTATATGGATCACC 59.080 40.000 0.00 0.00 32.82 4.02
2846 3374 6.503524 ACGCCAAAAACATTATATGGATCAC 58.496 36.000 0.00 0.00 32.82 3.06
2847 3375 6.707440 ACGCCAAAAACATTATATGGATCA 57.293 33.333 0.00 0.00 32.82 2.92
2848 3376 8.730680 AGATACGCCAAAAACATTATATGGATC 58.269 33.333 0.00 0.00 32.82 3.36
2849 3377 8.635765 AGATACGCCAAAAACATTATATGGAT 57.364 30.769 0.00 0.00 32.82 3.41
2850 3378 8.458573 AAGATACGCCAAAAACATTATATGGA 57.541 30.769 0.00 0.00 32.82 3.41
2855 3383 7.704899 GCCTTAAAGATACGCCAAAAACATTAT 59.295 33.333 0.00 0.00 0.00 1.28
2856 3384 7.030768 GCCTTAAAGATACGCCAAAAACATTA 58.969 34.615 0.00 0.00 0.00 1.90
2857 3385 5.867174 GCCTTAAAGATACGCCAAAAACATT 59.133 36.000 0.00 0.00 0.00 2.71
2858 3386 5.407502 GCCTTAAAGATACGCCAAAAACAT 58.592 37.500 0.00 0.00 0.00 2.71
2859 3387 4.614078 CGCCTTAAAGATACGCCAAAAACA 60.614 41.667 0.00 0.00 0.00 2.83
2860 3388 3.849708 CGCCTTAAAGATACGCCAAAAAC 59.150 43.478 0.00 0.00 0.00 2.43
2861 3389 3.671164 GCGCCTTAAAGATACGCCAAAAA 60.671 43.478 0.00 0.00 43.58 1.94
2862 3390 2.159490 GCGCCTTAAAGATACGCCAAAA 60.159 45.455 0.00 0.00 43.58 2.44
2863 3391 1.399089 GCGCCTTAAAGATACGCCAAA 59.601 47.619 0.00 0.00 43.58 3.28
2864 3392 1.011333 GCGCCTTAAAGATACGCCAA 58.989 50.000 0.00 0.00 43.58 4.52
2865 3393 2.685364 GCGCCTTAAAGATACGCCA 58.315 52.632 0.00 0.00 43.58 5.69
2868 3396 1.005347 CGGTTGCGCCTTAAAGATACG 60.005 52.381 4.18 0.00 34.25 3.06
2869 3397 2.273557 TCGGTTGCGCCTTAAAGATAC 58.726 47.619 4.18 0.00 34.25 2.24
2870 3398 2.676632 TCGGTTGCGCCTTAAAGATA 57.323 45.000 4.18 0.00 34.25 1.98
2871 3399 1.816074 TTCGGTTGCGCCTTAAAGAT 58.184 45.000 4.18 0.00 34.25 2.40
2872 3400 1.533731 CTTTCGGTTGCGCCTTAAAGA 59.466 47.619 4.18 0.00 38.83 2.52
2873 3401 1.963747 CTTTCGGTTGCGCCTTAAAG 58.036 50.000 4.18 4.23 34.10 1.85
2874 3402 0.039888 GCTTTCGGTTGCGCCTTAAA 60.040 50.000 4.18 0.00 34.25 1.52
2875 3403 0.887387 AGCTTTCGGTTGCGCCTTAA 60.887 50.000 4.18 0.00 34.25 1.85
2876 3404 1.302192 AGCTTTCGGTTGCGCCTTA 60.302 52.632 4.18 0.00 34.25 2.69
2877 3405 2.594592 AGCTTTCGGTTGCGCCTT 60.595 55.556 4.18 0.00 34.25 4.35
2878 3406 3.357079 CAGCTTTCGGTTGCGCCT 61.357 61.111 4.18 0.00 34.25 5.52
2883 3411 1.065401 TGACTTTGCAGCTTTCGGTTG 59.935 47.619 0.00 0.00 0.00 3.77
2884 3412 1.388547 TGACTTTGCAGCTTTCGGTT 58.611 45.000 0.00 0.00 0.00 4.44
2885 3413 1.609208 ATGACTTTGCAGCTTTCGGT 58.391 45.000 0.00 0.00 0.00 4.69
2886 3414 3.829886 TTATGACTTTGCAGCTTTCGG 57.170 42.857 0.00 0.00 0.00 4.30
2887 3415 4.024438 CGATTATGACTTTGCAGCTTTCG 58.976 43.478 0.00 0.00 0.00 3.46
2888 3416 5.024555 GTCGATTATGACTTTGCAGCTTTC 58.975 41.667 0.00 0.00 35.95 2.62
2889 3417 4.455533 TGTCGATTATGACTTTGCAGCTTT 59.544 37.500 0.00 0.00 39.64 3.51
2890 3418 4.002982 TGTCGATTATGACTTTGCAGCTT 58.997 39.130 0.00 0.00 39.64 3.74
2891 3419 3.599343 TGTCGATTATGACTTTGCAGCT 58.401 40.909 0.00 0.00 39.64 4.24
2892 3420 4.340894 TTGTCGATTATGACTTTGCAGC 57.659 40.909 0.00 0.00 39.64 5.25
2893 3421 5.931532 AGTTTGTCGATTATGACTTTGCAG 58.068 37.500 0.00 0.00 39.64 4.41
2894 3422 5.940192 AGTTTGTCGATTATGACTTTGCA 57.060 34.783 0.00 0.00 39.64 4.08
2895 3423 6.142817 ACAAGTTTGTCGATTATGACTTTGC 58.857 36.000 0.00 0.00 36.50 3.68
2896 3424 8.279800 TGTACAAGTTTGTCGATTATGACTTTG 58.720 33.333 0.00 0.00 42.35 2.77
2897 3425 8.280497 GTGTACAAGTTTGTCGATTATGACTTT 58.720 33.333 0.00 0.00 42.35 2.66
2898 3426 7.439955 TGTGTACAAGTTTGTCGATTATGACTT 59.560 33.333 0.00 0.00 42.35 3.01
2899 3427 6.926826 TGTGTACAAGTTTGTCGATTATGACT 59.073 34.615 0.00 0.00 42.35 3.41
2900 3428 7.112528 TGTGTACAAGTTTGTCGATTATGAC 57.887 36.000 0.00 0.00 42.35 3.06
2901 3429 7.899178 ATGTGTACAAGTTTGTCGATTATGA 57.101 32.000 0.00 0.00 42.35 2.15
2902 3430 8.227119 TCAATGTGTACAAGTTTGTCGATTATG 58.773 33.333 0.00 0.00 42.35 1.90
2903 3431 8.317891 TCAATGTGTACAAGTTTGTCGATTAT 57.682 30.769 0.00 0.00 42.35 1.28
2904 3432 7.716768 TCAATGTGTACAAGTTTGTCGATTA 57.283 32.000 0.00 0.00 42.35 1.75
2905 3433 6.612247 TCAATGTGTACAAGTTTGTCGATT 57.388 33.333 0.00 0.00 42.35 3.34
2906 3434 6.612247 TTCAATGTGTACAAGTTTGTCGAT 57.388 33.333 0.00 0.00 42.35 3.59
2907 3435 5.503357 GCTTCAATGTGTACAAGTTTGTCGA 60.503 40.000 0.00 0.00 42.35 4.20
2908 3436 4.670621 GCTTCAATGTGTACAAGTTTGTCG 59.329 41.667 0.00 0.18 42.35 4.35
2909 3437 5.577835 TGCTTCAATGTGTACAAGTTTGTC 58.422 37.500 0.00 0.00 42.35 3.18
2910 3438 5.574891 TGCTTCAATGTGTACAAGTTTGT 57.425 34.783 0.00 2.75 44.86 2.83
2911 3439 6.035843 ACTTGCTTCAATGTGTACAAGTTTG 58.964 36.000 0.00 2.25 43.73 2.93
2912 3440 6.207691 ACTTGCTTCAATGTGTACAAGTTT 57.792 33.333 0.00 0.00 43.73 2.66
2913 3441 5.835113 ACTTGCTTCAATGTGTACAAGTT 57.165 34.783 0.00 0.00 43.73 2.66
2915 3443 4.905866 CGAACTTGCTTCAATGTGTACAAG 59.094 41.667 0.00 0.00 40.19 3.16
2916 3444 4.572795 TCGAACTTGCTTCAATGTGTACAA 59.427 37.500 0.00 0.00 0.00 2.41
2917 3445 4.123506 TCGAACTTGCTTCAATGTGTACA 58.876 39.130 0.00 0.00 0.00 2.90
2918 3446 4.725556 TCGAACTTGCTTCAATGTGTAC 57.274 40.909 0.00 0.00 0.00 2.90
2919 3447 8.887036 ATATATCGAACTTGCTTCAATGTGTA 57.113 30.769 0.00 0.00 0.00 2.90
2920 3448 7.792374 ATATATCGAACTTGCTTCAATGTGT 57.208 32.000 0.00 0.00 0.00 3.72
2933 3461 8.770828 CCGGTTTGAATGTAAATATATCGAACT 58.229 33.333 0.00 0.00 0.00 3.01
2934 3462 8.553696 ACCGGTTTGAATGTAAATATATCGAAC 58.446 33.333 0.00 0.00 0.00 3.95
2935 3463 8.665643 ACCGGTTTGAATGTAAATATATCGAA 57.334 30.769 0.00 0.00 0.00 3.71
2936 3464 7.115236 CGACCGGTTTGAATGTAAATATATCGA 59.885 37.037 9.42 0.00 0.00 3.59
2937 3465 7.115236 TCGACCGGTTTGAATGTAAATATATCG 59.885 37.037 9.42 0.18 0.00 2.92
2938 3466 8.301730 TCGACCGGTTTGAATGTAAATATATC 57.698 34.615 9.42 0.00 0.00 1.63
2939 3467 8.842358 ATCGACCGGTTTGAATGTAAATATAT 57.158 30.769 9.42 0.00 0.00 0.86
2940 3468 9.932207 ATATCGACCGGTTTGAATGTAAATATA 57.068 29.630 9.42 0.00 0.00 0.86
2941 3469 8.842358 ATATCGACCGGTTTGAATGTAAATAT 57.158 30.769 9.42 0.58 0.00 1.28
2942 3470 8.665643 AATATCGACCGGTTTGAATGTAAATA 57.334 30.769 9.42 0.00 0.00 1.40
2943 3471 7.562454 AATATCGACCGGTTTGAATGTAAAT 57.438 32.000 9.42 0.00 0.00 1.40
2944 3472 6.988622 AATATCGACCGGTTTGAATGTAAA 57.011 33.333 9.42 0.00 0.00 2.01
2945 3473 6.988622 AAATATCGACCGGTTTGAATGTAA 57.011 33.333 9.42 0.00 0.00 2.41
2946 3474 7.548427 TGTTAAATATCGACCGGTTTGAATGTA 59.452 33.333 9.42 0.22 0.00 2.29
2947 3475 6.372103 TGTTAAATATCGACCGGTTTGAATGT 59.628 34.615 9.42 5.00 0.00 2.71
2948 3476 6.777101 TGTTAAATATCGACCGGTTTGAATG 58.223 36.000 9.42 0.00 0.00 2.67
2949 3477 6.988622 TGTTAAATATCGACCGGTTTGAAT 57.011 33.333 9.42 2.73 0.00 2.57
2950 3478 6.427547 ACTTGTTAAATATCGACCGGTTTGAA 59.572 34.615 9.42 0.00 0.00 2.69
2951 3479 5.933463 ACTTGTTAAATATCGACCGGTTTGA 59.067 36.000 9.42 11.17 0.00 2.69
2952 3480 6.173191 ACTTGTTAAATATCGACCGGTTTG 57.827 37.500 9.42 4.72 0.00 2.93
2953 3481 6.427547 TGAACTTGTTAAATATCGACCGGTTT 59.572 34.615 9.42 0.00 0.00 3.27
2954 3482 5.933463 TGAACTTGTTAAATATCGACCGGTT 59.067 36.000 9.42 0.00 0.00 4.44
2955 3483 5.481105 TGAACTTGTTAAATATCGACCGGT 58.519 37.500 6.92 6.92 0.00 5.28
2956 3484 6.411630 TTGAACTTGTTAAATATCGACCGG 57.588 37.500 0.00 0.00 0.00 5.28
2957 3485 9.976255 TTAATTGAACTTGTTAAATATCGACCG 57.024 29.630 0.00 0.00 0.00 4.79
2992 3520 8.498358 CGGTTCGTAGTATTTCTTTTAGGTTTT 58.502 33.333 0.00 0.00 0.00 2.43
2993 3521 7.657354 ACGGTTCGTAGTATTTCTTTTAGGTTT 59.343 33.333 0.00 0.00 38.73 3.27
2994 3522 7.154656 ACGGTTCGTAGTATTTCTTTTAGGTT 58.845 34.615 0.00 0.00 38.73 3.50
2995 3523 6.691508 ACGGTTCGTAGTATTTCTTTTAGGT 58.308 36.000 0.00 0.00 38.73 3.08
2996 3524 8.587111 GTTACGGTTCGTAGTATTTCTTTTAGG 58.413 37.037 0.57 0.00 43.21 2.69
2997 3525 8.587111 GGTTACGGTTCGTAGTATTTCTTTTAG 58.413 37.037 0.57 0.00 43.21 1.85
2998 3526 8.303876 AGGTTACGGTTCGTAGTATTTCTTTTA 58.696 33.333 0.57 0.00 43.21 1.52
2999 3527 7.154656 AGGTTACGGTTCGTAGTATTTCTTTT 58.845 34.615 0.57 0.00 43.21 2.27
3000 3528 6.691508 AGGTTACGGTTCGTAGTATTTCTTT 58.308 36.000 0.57 0.00 43.21 2.52
3001 3529 6.071952 TGAGGTTACGGTTCGTAGTATTTCTT 60.072 38.462 0.57 0.00 43.21 2.52
3002 3530 5.415701 TGAGGTTACGGTTCGTAGTATTTCT 59.584 40.000 0.57 0.00 43.21 2.52
3003 3531 5.513141 GTGAGGTTACGGTTCGTAGTATTTC 59.487 44.000 0.57 0.00 43.21 2.17
3004 3532 5.048083 TGTGAGGTTACGGTTCGTAGTATTT 60.048 40.000 0.57 0.00 43.21 1.40
3005 3533 4.458989 TGTGAGGTTACGGTTCGTAGTATT 59.541 41.667 0.57 0.00 43.21 1.89
3006 3534 4.009675 TGTGAGGTTACGGTTCGTAGTAT 58.990 43.478 0.57 0.00 43.21 2.12
3007 3535 3.407698 TGTGAGGTTACGGTTCGTAGTA 58.592 45.455 0.57 0.00 43.21 1.82
3008 3536 2.229792 TGTGAGGTTACGGTTCGTAGT 58.770 47.619 0.57 0.00 43.21 2.73
3009 3537 2.995466 TGTGAGGTTACGGTTCGTAG 57.005 50.000 0.57 0.00 43.21 3.51
3010 3538 3.940209 AATGTGAGGTTACGGTTCGTA 57.060 42.857 0.00 0.00 41.54 3.43
3011 3539 2.825861 AATGTGAGGTTACGGTTCGT 57.174 45.000 0.00 0.00 44.35 3.85
3012 3540 3.615496 CCTAAATGTGAGGTTACGGTTCG 59.385 47.826 0.00 0.00 0.00 3.95
3013 3541 3.937079 CCCTAAATGTGAGGTTACGGTTC 59.063 47.826 0.00 0.00 31.52 3.62
3014 3542 3.871074 GCCCTAAATGTGAGGTTACGGTT 60.871 47.826 0.00 0.00 31.52 4.44
3015 3543 2.355412 GCCCTAAATGTGAGGTTACGGT 60.355 50.000 0.00 0.00 31.52 4.83
3016 3544 2.285977 GCCCTAAATGTGAGGTTACGG 58.714 52.381 0.00 0.00 31.52 4.02
3017 3545 2.093128 AGGCCCTAAATGTGAGGTTACG 60.093 50.000 0.00 0.00 31.52 3.18
3018 3546 3.542648 GAGGCCCTAAATGTGAGGTTAC 58.457 50.000 0.00 0.00 31.52 2.50
3019 3547 2.508300 GGAGGCCCTAAATGTGAGGTTA 59.492 50.000 0.00 0.00 31.52 2.85
3020 3548 1.285078 GGAGGCCCTAAATGTGAGGTT 59.715 52.381 0.00 0.00 31.52 3.50
3021 3549 0.919710 GGAGGCCCTAAATGTGAGGT 59.080 55.000 0.00 0.00 31.52 3.85
3022 3550 3.808984 GGAGGCCCTAAATGTGAGG 57.191 57.895 0.00 0.00 0.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.