Multiple sequence alignment - TraesCS7B01G006600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G006600 chr7B 100.000 2755 0 0 389 3143 3702293 3699539 0.000000e+00 5088.0
1 TraesCS7B01G006600 chr7B 86.207 348 44 4 392 738 140165180 140164836 1.060000e-99 374.0
2 TraesCS7B01G006600 chr7B 92.258 155 11 1 2630 2783 133505551 133505705 5.280000e-53 219.0
3 TraesCS7B01G006600 chr7B 100.000 104 0 0 1 104 3702681 3702578 3.200000e-45 193.0
4 TraesCS7B01G006600 chr7D 88.098 1840 131 40 823 2633 63382831 63381051 0.000000e+00 2104.0
5 TraesCS7B01G006600 chr7D 80.000 390 33 18 389 774 187260594 187260246 2.420000e-61 246.0
6 TraesCS7B01G006600 chr7A 85.775 1174 92 34 909 2051 66171760 66170631 0.000000e+00 1173.0
7 TraesCS7B01G006600 chr7A 91.972 573 30 7 2063 2626 66170552 66169987 0.000000e+00 789.0
8 TraesCS7B01G006600 chr7A 89.943 348 32 3 2799 3143 66169986 66169639 2.220000e-121 446.0
9 TraesCS7B01G006600 chr7A 83.133 166 13 4 609 772 277633710 277633862 1.520000e-28 137.0
10 TraesCS7B01G006600 chr7A 87.838 74 9 0 2713 2786 734197467 734197540 1.550000e-13 87.9
11 TraesCS7B01G006600 chr7A 86.667 75 9 1 2713 2786 734205442 734205516 7.220000e-12 82.4
12 TraesCS7B01G006600 chr3B 88.235 340 36 4 389 726 498060108 498059771 1.360000e-108 403.0
13 TraesCS7B01G006600 chr3B 87.097 62 7 1 712 772 117698674 117698613 5.620000e-08 69.4
14 TraesCS7B01G006600 chr6B 85.090 389 42 6 389 774 45569575 45569200 1.770000e-102 383.0
15 TraesCS7B01G006600 chr6B 84.456 386 47 4 389 773 693811078 693811451 4.950000e-98 368.0
16 TraesCS7B01G006600 chr6B 78.663 389 66 12 389 774 478937655 478937281 3.130000e-60 243.0
17 TraesCS7B01G006600 chr1B 85.117 383 39 6 395 774 101148260 101147893 2.960000e-100 375.0
18 TraesCS7B01G006600 chr1B 83.763 388 47 6 389 774 229298622 229298249 1.390000e-93 353.0
19 TraesCS7B01G006600 chr1B 92.903 155 10 1 2630 2783 654815198 654815352 1.130000e-54 224.0
20 TraesCS7B01G006600 chr2A 84.021 388 46 6 389 774 445335374 445335747 2.980000e-95 359.0
21 TraesCS7B01G006600 chr2A 92.453 159 11 1 2629 2786 113807164 113807322 3.150000e-55 226.0
22 TraesCS7B01G006600 chr2A 89.571 163 11 1 2630 2786 718980010 718980172 5.320000e-48 202.0
23 TraesCS7B01G006600 chr2A 80.597 134 23 3 2655 2786 51003678 51003546 1.990000e-17 100.0
24 TraesCS7B01G006600 chr4B 85.119 336 47 3 392 726 36141857 36141524 1.080000e-89 340.0
25 TraesCS7B01G006600 chr4D 83.290 383 49 6 392 772 508594638 508594269 3.880000e-89 339.0
26 TraesCS7B01G006600 chr4D 82.597 385 52 6 389 771 21169112 21169483 3.020000e-85 326.0
27 TraesCS7B01G006600 chr4D 80.503 159 27 4 2630 2786 119739157 119739313 5.510000e-23 119.0
28 TraesCS7B01G006600 chrUn 76.427 403 63 24 389 782 46215511 46215890 4.140000e-44 189.0
29 TraesCS7B01G006600 chr4A 75.134 374 71 13 406 775 571991535 571991890 4.200000e-34 156.0
30 TraesCS7B01G006600 chr2D 74.300 393 56 27 389 772 107574430 107574786 1.180000e-24 124.0
31 TraesCS7B01G006600 chr5B 94.366 71 4 0 11 81 442776420 442776350 3.310000e-20 110.0
32 TraesCS7B01G006600 chr2B 79.268 164 20 3 613 774 65247699 65247850 5.550000e-18 102.0
33 TraesCS7B01G006600 chr3D 77.844 167 25 10 2629 2788 108008183 108008344 3.340000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G006600 chr7B 3699539 3702681 3142 True 2640.500000 5088 100.000 1 3143 2 chr7B.!!$R2 3142
1 TraesCS7B01G006600 chr7D 63381051 63382831 1780 True 2104.000000 2104 88.098 823 2633 1 chr7D.!!$R1 1810
2 TraesCS7B01G006600 chr7A 66169639 66171760 2121 True 802.666667 1173 89.230 909 3143 3 chr7A.!!$R1 2234

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
757 758 0.034896 TCGGAGTCTTTTGCAGGGTC 59.965 55.0 0.0 0.0 0.0 4.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2635 2761 0.034616 GAGGCTCAATCCTGGATCCG 59.965 60.0 10.14 4.72 36.38 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.955402 GAGGACGATCGATCCCGG 59.045 66.667 24.34 8.42 36.86 5.73
18 19 2.597805 AGGACGATCGATCCCGGG 60.598 66.667 24.34 16.85 36.86 5.73
19 20 4.359455 GGACGATCGATCCCGGGC 62.359 72.222 24.34 7.92 36.24 6.13
20 21 4.702081 GACGATCGATCCCGGGCG 62.702 72.222 24.34 15.74 38.18 6.13
65 66 4.467084 GATCCCTGGCGGCGACAA 62.467 66.667 19.53 1.14 0.00 3.18
66 67 4.778143 ATCCCTGGCGGCGACAAC 62.778 66.667 19.53 0.00 0.00 3.32
70 71 3.853330 CTGGCGGCGACAACGATG 61.853 66.667 19.53 0.00 42.66 3.84
71 72 4.365505 TGGCGGCGACAACGATGA 62.366 61.111 15.88 0.00 42.66 2.92
72 73 3.554692 GGCGGCGACAACGATGAG 61.555 66.667 12.98 0.00 42.66 2.90
73 74 3.554692 GCGGCGACAACGATGAGG 61.555 66.667 12.98 0.00 42.66 3.86
74 75 2.885644 CGGCGACAACGATGAGGG 60.886 66.667 0.00 0.00 42.66 4.30
75 76 2.511600 GGCGACAACGATGAGGGG 60.512 66.667 0.00 0.00 42.66 4.79
76 77 3.195698 GCGACAACGATGAGGGGC 61.196 66.667 0.00 0.00 42.66 5.80
77 78 2.885644 CGACAACGATGAGGGGCG 60.886 66.667 0.00 0.00 42.66 6.13
78 79 2.511600 GACAACGATGAGGGGCGG 60.512 66.667 0.00 0.00 0.00 6.13
79 80 4.778143 ACAACGATGAGGGGCGGC 62.778 66.667 0.00 0.00 0.00 6.53
80 81 4.473520 CAACGATGAGGGGCGGCT 62.474 66.667 9.56 0.00 0.00 5.52
81 82 4.162690 AACGATGAGGGGCGGCTC 62.163 66.667 9.56 4.13 0.00 4.70
83 84 3.854669 CGATGAGGGGCGGCTCTT 61.855 66.667 14.75 0.00 0.00 2.85
84 85 2.110006 GATGAGGGGCGGCTCTTC 59.890 66.667 14.75 3.24 0.00 2.87
85 86 2.366167 ATGAGGGGCGGCTCTTCT 60.366 61.111 14.75 0.00 0.00 2.85
86 87 1.977293 GATGAGGGGCGGCTCTTCTT 61.977 60.000 14.75 6.81 0.00 2.52
87 88 2.124942 GAGGGGCGGCTCTTCTTG 60.125 66.667 14.75 0.00 0.00 3.02
88 89 4.416738 AGGGGCGGCTCTTCTTGC 62.417 66.667 5.04 0.00 0.00 4.01
89 90 4.416738 GGGGCGGCTCTTCTTGCT 62.417 66.667 9.56 0.00 0.00 3.91
90 91 3.130160 GGGCGGCTCTTCTTGCTG 61.130 66.667 9.56 0.00 39.61 4.41
91 92 3.130160 GGCGGCTCTTCTTGCTGG 61.130 66.667 0.00 0.00 37.29 4.85
92 93 2.046892 GCGGCTCTTCTTGCTGGA 60.047 61.111 0.00 0.00 37.29 3.86
93 94 1.451028 GCGGCTCTTCTTGCTGGAT 60.451 57.895 0.00 0.00 37.29 3.41
94 95 1.435408 GCGGCTCTTCTTGCTGGATC 61.435 60.000 0.00 0.00 37.29 3.36
95 96 1.150567 CGGCTCTTCTTGCTGGATCG 61.151 60.000 0.00 0.00 33.50 3.69
96 97 0.813210 GGCTCTTCTTGCTGGATCGG 60.813 60.000 0.00 0.00 0.00 4.18
97 98 0.813210 GCTCTTCTTGCTGGATCGGG 60.813 60.000 0.00 0.00 0.00 5.14
98 99 0.826715 CTCTTCTTGCTGGATCGGGA 59.173 55.000 0.00 0.00 0.00 5.14
99 100 0.826715 TCTTCTTGCTGGATCGGGAG 59.173 55.000 0.00 0.00 0.00 4.30
100 101 0.179062 CTTCTTGCTGGATCGGGAGG 60.179 60.000 0.00 0.00 0.00 4.30
101 102 1.626356 TTCTTGCTGGATCGGGAGGG 61.626 60.000 0.00 0.00 0.00 4.30
102 103 3.089874 TTGCTGGATCGGGAGGGG 61.090 66.667 0.00 0.00 0.00 4.79
414 415 4.537433 GCCTAGCTGTGGCGGAGG 62.537 72.222 15.21 4.57 44.18 4.30
415 416 3.854669 CCTAGCTGTGGCGGAGGG 61.855 72.222 0.00 0.00 44.37 4.30
416 417 3.077556 CTAGCTGTGGCGGAGGGT 61.078 66.667 0.00 0.00 44.37 4.34
417 418 3.376935 CTAGCTGTGGCGGAGGGTG 62.377 68.421 0.00 0.00 44.37 4.61
418 419 3.897681 TAGCTGTGGCGGAGGGTGA 62.898 63.158 0.00 0.00 44.37 4.02
419 420 4.767255 GCTGTGGCGGAGGGTGAG 62.767 72.222 0.00 0.00 0.00 3.51
420 421 4.087892 CTGTGGCGGAGGGTGAGG 62.088 72.222 0.00 0.00 0.00 3.86
453 454 3.409856 CGATTTCGCCCGCAGATT 58.590 55.556 0.00 0.00 0.00 2.40
454 455 1.721487 CGATTTCGCCCGCAGATTT 59.279 52.632 0.00 0.00 0.00 2.17
455 456 0.589729 CGATTTCGCCCGCAGATTTG 60.590 55.000 0.00 0.00 0.00 2.32
456 457 0.248621 GATTTCGCCCGCAGATTTGG 60.249 55.000 0.00 0.00 0.00 3.28
457 458 2.283472 ATTTCGCCCGCAGATTTGGC 62.283 55.000 0.00 0.00 41.85 4.52
461 462 4.794648 CCCGCAGATTTGGCCGGA 62.795 66.667 5.05 0.00 32.31 5.14
462 463 2.749839 CCGCAGATTTGGCCGGAA 60.750 61.111 5.05 0.00 0.00 4.30
463 464 2.120909 CCGCAGATTTGGCCGGAAT 61.121 57.895 5.05 0.12 0.00 3.01
464 465 1.356624 CGCAGATTTGGCCGGAATC 59.643 57.895 18.98 18.98 34.48 2.52
465 466 1.356624 GCAGATTTGGCCGGAATCG 59.643 57.895 19.93 16.57 38.29 3.34
488 489 3.637273 GGTGGACGGGCAGAACCT 61.637 66.667 0.00 0.00 39.10 3.50
489 490 2.288025 GGTGGACGGGCAGAACCTA 61.288 63.158 0.00 0.00 39.10 3.08
490 491 1.623542 GGTGGACGGGCAGAACCTAT 61.624 60.000 0.00 0.00 39.10 2.57
491 492 0.462047 GTGGACGGGCAGAACCTATG 60.462 60.000 0.00 0.00 39.10 2.23
492 493 1.146263 GGACGGGCAGAACCTATGG 59.854 63.158 0.00 0.00 39.10 2.74
493 494 1.523938 GACGGGCAGAACCTATGGC 60.524 63.158 0.00 0.00 42.19 4.40
494 495 2.588877 CGGGCAGAACCTATGGCG 60.589 66.667 0.00 0.00 43.74 5.69
495 496 2.203209 GGGCAGAACCTATGGCGG 60.203 66.667 0.00 0.00 43.74 6.13
496 497 2.203209 GGCAGAACCTATGGCGGG 60.203 66.667 0.00 0.00 33.23 6.13
497 498 2.902343 GCAGAACCTATGGCGGGC 60.902 66.667 0.00 0.00 0.00 6.13
498 499 2.588877 CAGAACCTATGGCGGGCG 60.589 66.667 0.00 0.00 0.00 6.13
499 500 2.762459 AGAACCTATGGCGGGCGA 60.762 61.111 0.00 0.00 0.00 5.54
500 501 2.588034 GAACCTATGGCGGGCGAC 60.588 66.667 0.00 0.00 0.00 5.19
514 515 4.796231 CGACGGCGGAAGGAGGTG 62.796 72.222 13.24 0.00 0.00 4.00
515 516 4.452733 GACGGCGGAAGGAGGTGG 62.453 72.222 13.24 0.00 0.00 4.61
519 520 3.327404 GCGGAAGGAGGTGGGGAA 61.327 66.667 0.00 0.00 0.00 3.97
520 521 2.902457 GCGGAAGGAGGTGGGGAAA 61.902 63.158 0.00 0.00 0.00 3.13
521 522 1.299976 CGGAAGGAGGTGGGGAAAG 59.700 63.158 0.00 0.00 0.00 2.62
522 523 1.691823 GGAAGGAGGTGGGGAAAGG 59.308 63.158 0.00 0.00 0.00 3.11
523 524 1.691823 GAAGGAGGTGGGGAAAGGG 59.308 63.158 0.00 0.00 0.00 3.95
524 525 1.857348 AAGGAGGTGGGGAAAGGGG 60.857 63.158 0.00 0.00 0.00 4.79
525 526 4.062032 GGAGGTGGGGAAAGGGGC 62.062 72.222 0.00 0.00 0.00 5.80
526 527 4.426313 GAGGTGGGGAAAGGGGCG 62.426 72.222 0.00 0.00 0.00 6.13
534 535 4.388499 GAAAGGGGCGCGGACTGA 62.388 66.667 8.83 0.00 0.00 3.41
535 536 3.894547 GAAAGGGGCGCGGACTGAA 62.895 63.158 8.83 0.00 0.00 3.02
536 537 3.485346 AAAGGGGCGCGGACTGAAA 62.485 57.895 8.83 0.00 0.00 2.69
537 538 2.764637 AAAGGGGCGCGGACTGAAAT 62.765 55.000 8.83 0.00 0.00 2.17
538 539 3.508840 GGGGCGCGGACTGAAATG 61.509 66.667 8.83 0.00 0.00 2.32
539 540 2.746277 GGGCGCGGACTGAAATGT 60.746 61.111 8.83 0.00 0.00 2.71
540 541 2.750888 GGGCGCGGACTGAAATGTC 61.751 63.158 8.83 0.00 36.31 3.06
547 548 3.460648 GACTGAAATGTCCCTCCCG 57.539 57.895 0.00 0.00 0.00 5.14
548 549 0.744771 GACTGAAATGTCCCTCCCGC 60.745 60.000 0.00 0.00 0.00 6.13
549 550 1.452108 CTGAAATGTCCCTCCCGCC 60.452 63.158 0.00 0.00 0.00 6.13
550 551 2.196997 CTGAAATGTCCCTCCCGCCA 62.197 60.000 0.00 0.00 0.00 5.69
551 552 1.001393 GAAATGTCCCTCCCGCCAA 60.001 57.895 0.00 0.00 0.00 4.52
552 553 1.304134 AAATGTCCCTCCCGCCAAC 60.304 57.895 0.00 0.00 0.00 3.77
553 554 2.781431 AAATGTCCCTCCCGCCAACC 62.781 60.000 0.00 0.00 0.00 3.77
559 560 4.697756 CTCCCGCCAACCGCTTCA 62.698 66.667 0.00 0.00 35.03 3.02
562 563 2.978010 CCGCCAACCGCTTCACTT 60.978 61.111 0.00 0.00 35.03 3.16
563 564 2.556287 CGCCAACCGCTTCACTTC 59.444 61.111 0.00 0.00 34.21 3.01
564 565 2.556287 GCCAACCGCTTCACTTCG 59.444 61.111 0.00 0.00 0.00 3.79
570 571 2.677971 CCGCTTCACTTCGGTATGG 58.322 57.895 0.00 0.00 40.72 2.74
571 572 0.810031 CCGCTTCACTTCGGTATGGG 60.810 60.000 0.00 0.00 40.72 4.00
572 573 0.810031 CGCTTCACTTCGGTATGGGG 60.810 60.000 0.00 0.00 0.00 4.96
573 574 1.095807 GCTTCACTTCGGTATGGGGC 61.096 60.000 0.00 0.00 0.00 5.80
574 575 0.251916 CTTCACTTCGGTATGGGGCA 59.748 55.000 0.00 0.00 0.00 5.36
575 576 0.035820 TTCACTTCGGTATGGGGCAC 60.036 55.000 0.00 0.00 0.00 5.01
576 577 0.907704 TCACTTCGGTATGGGGCACT 60.908 55.000 0.00 0.00 0.00 4.40
577 578 0.744414 CACTTCGGTATGGGGCACTG 60.744 60.000 0.00 0.00 0.00 3.66
578 579 1.198759 ACTTCGGTATGGGGCACTGT 61.199 55.000 0.00 0.00 0.00 3.55
579 580 0.828022 CTTCGGTATGGGGCACTGTA 59.172 55.000 0.00 0.00 0.00 2.74
580 581 0.828022 TTCGGTATGGGGCACTGTAG 59.172 55.000 0.00 0.00 0.00 2.74
581 582 1.046472 TCGGTATGGGGCACTGTAGG 61.046 60.000 0.00 0.00 0.00 3.18
582 583 1.837090 GGTATGGGGCACTGTAGGG 59.163 63.158 0.00 0.00 0.00 3.53
583 584 1.705997 GGTATGGGGCACTGTAGGGG 61.706 65.000 0.00 0.00 0.00 4.79
584 585 2.076184 TATGGGGCACTGTAGGGGC 61.076 63.158 0.00 0.00 0.00 5.80
587 588 4.162690 GGGCACTGTAGGGGCGAG 62.163 72.222 1.37 0.00 0.00 5.03
588 589 4.162690 GGCACTGTAGGGGCGAGG 62.163 72.222 0.00 0.00 0.00 4.63
589 590 4.840005 GCACTGTAGGGGCGAGGC 62.840 72.222 0.00 0.00 0.00 4.70
590 591 4.514577 CACTGTAGGGGCGAGGCG 62.515 72.222 0.00 0.00 0.00 5.52
591 592 4.753662 ACTGTAGGGGCGAGGCGA 62.754 66.667 0.00 0.00 0.00 5.54
592 593 3.458163 CTGTAGGGGCGAGGCGAA 61.458 66.667 0.00 0.00 0.00 4.70
593 594 2.998480 TGTAGGGGCGAGGCGAAA 60.998 61.111 0.00 0.00 0.00 3.46
594 595 2.266689 GTAGGGGCGAGGCGAAAA 59.733 61.111 0.00 0.00 0.00 2.29
595 596 2.104859 GTAGGGGCGAGGCGAAAAC 61.105 63.158 0.00 0.00 0.00 2.43
596 597 3.319441 TAGGGGCGAGGCGAAAACC 62.319 63.158 0.00 0.00 0.00 3.27
610 611 4.561735 CGAAAACCCGCAAATATATGGT 57.438 40.909 0.00 0.00 0.00 3.55
611 612 4.927422 CGAAAACCCGCAAATATATGGTT 58.073 39.130 0.00 0.00 40.91 3.67
613 614 5.231147 CGAAAACCCGCAAATATATGGTTTG 59.769 40.000 14.59 5.68 45.84 2.93
614 615 4.664150 AACCCGCAAATATATGGTTTGG 57.336 40.909 13.81 6.99 35.87 3.28
615 616 2.962421 ACCCGCAAATATATGGTTTGGG 59.038 45.455 17.85 17.85 44.38 4.12
617 618 3.025287 CGCAAATATATGGTTTGGGGC 57.975 47.619 17.37 5.80 42.40 5.80
618 619 2.288763 CGCAAATATATGGTTTGGGGCC 60.289 50.000 17.37 0.00 42.40 5.80
619 620 2.703007 GCAAATATATGGTTTGGGGCCA 59.297 45.455 4.39 0.00 40.68 5.36
620 621 3.135530 GCAAATATATGGTTTGGGGCCAA 59.864 43.478 4.39 0.00 39.72 4.52
621 622 4.743348 GCAAATATATGGTTTGGGGCCAAG 60.743 45.833 4.39 0.00 39.72 3.61
622 623 4.551215 AATATATGGTTTGGGGCCAAGA 57.449 40.909 4.39 0.00 39.72 3.02
623 624 4.765195 ATATATGGTTTGGGGCCAAGAT 57.235 40.909 4.39 0.00 39.72 2.40
624 625 2.938428 TATGGTTTGGGGCCAAGATT 57.062 45.000 4.39 0.00 39.72 2.40
625 626 2.043307 ATGGTTTGGGGCCAAGATTT 57.957 45.000 4.39 0.00 39.72 2.17
626 627 1.813102 TGGTTTGGGGCCAAGATTTT 58.187 45.000 4.39 0.00 37.24 1.82
627 628 1.419387 TGGTTTGGGGCCAAGATTTTG 59.581 47.619 4.39 0.00 37.24 2.44
628 629 1.522668 GTTTGGGGCCAAGATTTTGC 58.477 50.000 4.39 0.00 37.24 3.68
629 630 0.399833 TTTGGGGCCAAGATTTTGCC 59.600 50.000 4.39 0.00 37.24 4.52
630 631 1.825281 TTGGGGCCAAGATTTTGCCG 61.825 55.000 4.39 0.00 33.78 5.69
631 632 2.282783 GGGGCCAAGATTTTGCCGT 61.283 57.895 4.39 0.00 33.78 5.68
632 633 1.079888 GGGCCAAGATTTTGCCGTG 60.080 57.895 4.39 0.00 33.78 4.94
633 634 1.737735 GGCCAAGATTTTGCCGTGC 60.738 57.895 0.00 0.00 32.79 5.34
634 635 1.737735 GCCAAGATTTTGCCGTGCC 60.738 57.895 0.00 0.00 32.79 5.01
635 636 1.079888 CCAAGATTTTGCCGTGCCC 60.080 57.895 0.00 0.00 32.79 5.36
636 637 1.079888 CAAGATTTTGCCGTGCCCC 60.080 57.895 0.00 0.00 0.00 5.80
637 638 1.228862 AAGATTTTGCCGTGCCCCT 60.229 52.632 0.00 0.00 0.00 4.79
638 639 1.250840 AAGATTTTGCCGTGCCCCTC 61.251 55.000 0.00 0.00 0.00 4.30
639 640 1.976474 GATTTTGCCGTGCCCCTCA 60.976 57.895 0.00 0.00 0.00 3.86
640 641 1.531739 GATTTTGCCGTGCCCCTCAA 61.532 55.000 0.00 0.00 0.00 3.02
641 642 1.118356 ATTTTGCCGTGCCCCTCAAA 61.118 50.000 0.00 0.00 0.00 2.69
642 643 1.330655 TTTTGCCGTGCCCCTCAAAA 61.331 50.000 0.00 0.00 36.45 2.44
643 644 1.330655 TTTGCCGTGCCCCTCAAAAA 61.331 50.000 0.00 0.00 0.00 1.94
658 659 2.627791 AAAAATTTTGCGGGCTGGC 58.372 47.368 3.73 0.00 0.00 4.85
659 660 0.888736 AAAAATTTTGCGGGCTGGCC 60.889 50.000 10.75 10.75 0.00 5.36
660 661 3.588057 AAATTTTGCGGGCTGGCCG 62.588 57.895 34.98 34.98 36.85 6.13
677 678 3.276846 GCGTTGGCGTGGTCTGTT 61.277 61.111 0.00 0.00 40.81 3.16
678 679 2.935955 CGTTGGCGTGGTCTGTTC 59.064 61.111 0.00 0.00 0.00 3.18
679 680 2.935955 GTTGGCGTGGTCTGTTCG 59.064 61.111 0.00 0.00 0.00 3.95
680 681 2.280524 TTGGCGTGGTCTGTTCGG 60.281 61.111 0.00 0.00 0.00 4.30
685 686 3.998672 GTGGTCTGTTCGGCGGGA 61.999 66.667 7.21 0.00 0.00 5.14
686 687 3.000819 TGGTCTGTTCGGCGGGAT 61.001 61.111 7.21 0.00 0.00 3.85
687 688 2.267961 GGTCTGTTCGGCGGGATT 59.732 61.111 7.21 0.00 0.00 3.01
688 689 1.376812 GGTCTGTTCGGCGGGATTT 60.377 57.895 7.21 0.00 0.00 2.17
689 690 0.958876 GGTCTGTTCGGCGGGATTTT 60.959 55.000 7.21 0.00 0.00 1.82
690 691 0.446616 GTCTGTTCGGCGGGATTTTC 59.553 55.000 7.21 0.00 0.00 2.29
691 692 0.675522 TCTGTTCGGCGGGATTTTCC 60.676 55.000 7.21 0.00 35.23 3.13
699 700 3.872728 GGGATTTTCCGCGCCGAC 61.873 66.667 0.00 0.00 37.43 4.79
700 701 3.872728 GGATTTTCCGCGCCGACC 61.873 66.667 0.00 0.00 0.00 4.79
701 702 3.872728 GATTTTCCGCGCCGACCC 61.873 66.667 0.00 0.00 0.00 4.46
702 703 4.708386 ATTTTCCGCGCCGACCCA 62.708 61.111 0.00 0.00 0.00 4.51
708 709 3.732892 CGCGCCGACCCACATTTT 61.733 61.111 0.00 0.00 0.00 1.82
709 710 2.392181 CGCGCCGACCCACATTTTA 61.392 57.895 0.00 0.00 0.00 1.52
710 711 1.427819 GCGCCGACCCACATTTTAG 59.572 57.895 0.00 0.00 0.00 1.85
711 712 1.427819 CGCCGACCCACATTTTAGC 59.572 57.895 0.00 0.00 0.00 3.09
712 713 1.807226 GCCGACCCACATTTTAGCC 59.193 57.895 0.00 0.00 0.00 3.93
713 714 1.663379 GCCGACCCACATTTTAGCCC 61.663 60.000 0.00 0.00 0.00 5.19
714 715 0.322997 CCGACCCACATTTTAGCCCA 60.323 55.000 0.00 0.00 0.00 5.36
715 716 1.684869 CCGACCCACATTTTAGCCCAT 60.685 52.381 0.00 0.00 0.00 4.00
716 717 2.422235 CCGACCCACATTTTAGCCCATA 60.422 50.000 0.00 0.00 0.00 2.74
717 718 3.486383 CGACCCACATTTTAGCCCATAT 58.514 45.455 0.00 0.00 0.00 1.78
718 719 3.888930 CGACCCACATTTTAGCCCATATT 59.111 43.478 0.00 0.00 0.00 1.28
719 720 4.340950 CGACCCACATTTTAGCCCATATTT 59.659 41.667 0.00 0.00 0.00 1.40
720 721 5.163457 CGACCCACATTTTAGCCCATATTTT 60.163 40.000 0.00 0.00 0.00 1.82
721 722 5.988287 ACCCACATTTTAGCCCATATTTTG 58.012 37.500 0.00 0.00 0.00 2.44
722 723 5.104569 ACCCACATTTTAGCCCATATTTTGG 60.105 40.000 0.00 0.00 46.00 3.28
730 731 3.744238 GCCCATATTTTGGCGGTTATT 57.256 42.857 0.00 0.00 44.97 1.40
731 732 4.066646 GCCCATATTTTGGCGGTTATTT 57.933 40.909 0.00 0.00 44.97 1.40
732 733 4.447290 GCCCATATTTTGGCGGTTATTTT 58.553 39.130 0.00 0.00 44.97 1.82
733 734 4.272261 GCCCATATTTTGGCGGTTATTTTG 59.728 41.667 0.00 0.00 44.97 2.44
734 735 4.272261 CCCATATTTTGGCGGTTATTTTGC 59.728 41.667 0.00 0.00 44.97 3.68
735 736 4.026145 CCATATTTTGGCGGTTATTTTGCG 60.026 41.667 0.00 0.00 39.09 4.85
736 737 1.784525 TTTTGGCGGTTATTTTGCGG 58.215 45.000 0.00 0.00 0.00 5.69
737 738 0.038159 TTTGGCGGTTATTTTGCGGG 60.038 50.000 0.00 0.00 0.00 6.13
738 739 1.179814 TTGGCGGTTATTTTGCGGGT 61.180 50.000 0.00 0.00 0.00 5.28
739 740 1.138036 GGCGGTTATTTTGCGGGTC 59.862 57.895 0.00 0.00 0.00 4.46
740 741 1.226184 GCGGTTATTTTGCGGGTCG 60.226 57.895 0.00 0.00 0.00 4.79
741 742 1.426223 CGGTTATTTTGCGGGTCGG 59.574 57.895 0.00 0.00 0.00 4.79
742 743 1.020333 CGGTTATTTTGCGGGTCGGA 61.020 55.000 0.00 0.00 0.00 4.55
743 744 0.730840 GGTTATTTTGCGGGTCGGAG 59.269 55.000 0.00 0.00 0.00 4.63
744 745 1.445871 GTTATTTTGCGGGTCGGAGT 58.554 50.000 0.00 0.00 0.00 3.85
745 746 1.395954 GTTATTTTGCGGGTCGGAGTC 59.604 52.381 0.00 0.00 0.00 3.36
746 747 0.899720 TATTTTGCGGGTCGGAGTCT 59.100 50.000 0.00 0.00 0.00 3.24
747 748 0.036306 ATTTTGCGGGTCGGAGTCTT 59.964 50.000 0.00 0.00 0.00 3.01
748 749 0.179040 TTTTGCGGGTCGGAGTCTTT 60.179 50.000 0.00 0.00 0.00 2.52
749 750 0.179040 TTTGCGGGTCGGAGTCTTTT 60.179 50.000 0.00 0.00 0.00 2.27
750 751 0.882927 TTGCGGGTCGGAGTCTTTTG 60.883 55.000 0.00 0.00 0.00 2.44
751 752 2.677979 GCGGGTCGGAGTCTTTTGC 61.678 63.158 0.00 0.00 0.00 3.68
752 753 1.301401 CGGGTCGGAGTCTTTTGCA 60.301 57.895 0.00 0.00 0.00 4.08
753 754 1.291877 CGGGTCGGAGTCTTTTGCAG 61.292 60.000 0.00 0.00 0.00 4.41
754 755 0.955919 GGGTCGGAGTCTTTTGCAGG 60.956 60.000 0.00 0.00 0.00 4.85
755 756 0.955919 GGTCGGAGTCTTTTGCAGGG 60.956 60.000 0.00 0.00 0.00 4.45
756 757 0.250338 GTCGGAGTCTTTTGCAGGGT 60.250 55.000 0.00 0.00 0.00 4.34
757 758 0.034896 TCGGAGTCTTTTGCAGGGTC 59.965 55.000 0.00 0.00 0.00 4.46
758 759 0.035458 CGGAGTCTTTTGCAGGGTCT 59.965 55.000 0.00 0.00 0.00 3.85
759 760 1.528129 GGAGTCTTTTGCAGGGTCTG 58.472 55.000 0.00 0.00 34.12 3.51
769 770 3.944476 CAGGGTCTGCTAAGTTGCT 57.056 52.632 0.00 0.00 0.00 3.91
770 771 1.731720 CAGGGTCTGCTAAGTTGCTC 58.268 55.000 0.00 0.00 0.00 4.26
771 772 1.277557 CAGGGTCTGCTAAGTTGCTCT 59.722 52.381 0.00 0.00 0.00 4.09
772 773 1.981495 AGGGTCTGCTAAGTTGCTCTT 59.019 47.619 0.00 0.00 39.89 2.85
773 774 3.055819 CAGGGTCTGCTAAGTTGCTCTTA 60.056 47.826 0.00 0.00 37.56 2.10
774 775 3.777522 AGGGTCTGCTAAGTTGCTCTTAT 59.222 43.478 3.28 0.00 37.89 1.73
775 776 3.873952 GGGTCTGCTAAGTTGCTCTTATG 59.126 47.826 3.28 1.02 37.89 1.90
776 777 3.873952 GGTCTGCTAAGTTGCTCTTATGG 59.126 47.826 3.28 0.00 37.89 2.74
777 778 3.311048 GTCTGCTAAGTTGCTCTTATGGC 59.689 47.826 3.28 5.12 37.89 4.40
778 779 3.055167 TCTGCTAAGTTGCTCTTATGGCA 60.055 43.478 0.00 0.00 37.42 4.92
779 780 3.273434 TGCTAAGTTGCTCTTATGGCAG 58.727 45.455 0.00 0.00 40.90 4.85
780 781 2.615912 GCTAAGTTGCTCTTATGGCAGG 59.384 50.000 0.00 0.00 40.90 4.85
781 782 3.682718 GCTAAGTTGCTCTTATGGCAGGA 60.683 47.826 0.00 0.00 40.90 3.86
782 783 3.659183 AAGTTGCTCTTATGGCAGGAT 57.341 42.857 0.00 0.00 40.90 3.24
783 784 4.778213 AAGTTGCTCTTATGGCAGGATA 57.222 40.909 0.00 0.00 40.90 2.59
784 785 4.989875 AGTTGCTCTTATGGCAGGATAT 57.010 40.909 0.00 0.00 40.90 1.63
785 786 6.439636 AAGTTGCTCTTATGGCAGGATATA 57.560 37.500 0.00 0.00 40.90 0.86
786 787 6.047511 AGTTGCTCTTATGGCAGGATATAG 57.952 41.667 0.00 0.00 40.90 1.31
787 788 4.478206 TGCTCTTATGGCAGGATATAGC 57.522 45.455 0.00 0.00 34.56 2.97
788 789 4.099633 TGCTCTTATGGCAGGATATAGCT 58.900 43.478 0.00 0.00 34.56 3.32
789 790 4.081254 TGCTCTTATGGCAGGATATAGCTG 60.081 45.833 0.00 0.00 34.56 4.24
790 791 4.081198 GCTCTTATGGCAGGATATAGCTGT 60.081 45.833 0.00 0.00 0.00 4.40
791 792 5.659463 CTCTTATGGCAGGATATAGCTGTC 58.341 45.833 0.00 0.00 0.00 3.51
792 793 4.158579 TCTTATGGCAGGATATAGCTGTCG 59.841 45.833 0.00 0.00 0.00 4.35
793 794 0.318441 TGGCAGGATATAGCTGTCGC 59.682 55.000 0.00 0.00 0.00 5.19
794 795 0.734253 GGCAGGATATAGCTGTCGCG 60.734 60.000 0.00 0.00 42.32 5.87
795 796 1.347817 GCAGGATATAGCTGTCGCGC 61.348 60.000 0.00 0.00 42.32 6.86
796 797 1.067743 CAGGATATAGCTGTCGCGCG 61.068 60.000 26.76 26.76 42.32 6.86
797 798 1.081376 GGATATAGCTGTCGCGCGT 60.081 57.895 30.98 12.90 42.32 6.01
798 799 0.663568 GGATATAGCTGTCGCGCGTT 60.664 55.000 30.98 13.49 42.32 4.84
799 800 1.129326 GATATAGCTGTCGCGCGTTT 58.871 50.000 30.98 13.84 42.32 3.60
800 801 1.122680 GATATAGCTGTCGCGCGTTTC 59.877 52.381 30.98 20.56 42.32 2.78
801 802 0.868602 TATAGCTGTCGCGCGTTTCC 60.869 55.000 30.98 16.53 42.32 3.13
836 837 0.107848 CCGGTCGCCAAATAGAACCT 60.108 55.000 0.00 0.00 0.00 3.50
886 887 7.680350 GCAGCAGATAAGATTTTGATAGCACAA 60.680 37.037 0.00 0.00 0.00 3.33
887 888 8.186163 CAGCAGATAAGATTTTGATAGCACAAA 58.814 33.333 0.00 0.00 37.87 2.83
919 920 3.790437 CCTCAGCGGCCACAGGAT 61.790 66.667 2.24 0.00 0.00 3.24
947 948 3.381045 CCGAAACGAATATAGCAGCAGA 58.619 45.455 0.00 0.00 0.00 4.26
948 949 3.802139 CCGAAACGAATATAGCAGCAGAA 59.198 43.478 0.00 0.00 0.00 3.02
959 960 3.258971 AGCAGCAGAACAGGATAAGAC 57.741 47.619 0.00 0.00 0.00 3.01
979 981 2.354821 ACTCAAAAACCTTGACGACTGC 59.645 45.455 0.00 0.00 0.00 4.40
1132 1149 4.016790 AGCAGCAGGGGAGGAGGA 62.017 66.667 0.00 0.00 0.00 3.71
1133 1150 3.011517 GCAGCAGGGGAGGAGGAA 61.012 66.667 0.00 0.00 0.00 3.36
1134 1151 3.041469 GCAGCAGGGGAGGAGGAAG 62.041 68.421 0.00 0.00 0.00 3.46
1135 1152 1.306482 CAGCAGGGGAGGAGGAAGA 60.306 63.158 0.00 0.00 0.00 2.87
1136 1153 1.002792 AGCAGGGGAGGAGGAAGAG 59.997 63.158 0.00 0.00 0.00 2.85
1137 1154 2.741055 GCAGGGGAGGAGGAAGAGC 61.741 68.421 0.00 0.00 0.00 4.09
1138 1155 2.042435 AGGGGAGGAGGAAGAGCG 60.042 66.667 0.00 0.00 0.00 5.03
1139 1156 3.157949 GGGGAGGAGGAAGAGCGG 61.158 72.222 0.00 0.00 0.00 5.52
1140 1157 3.157949 GGGAGGAGGAAGAGCGGG 61.158 72.222 0.00 0.00 0.00 6.13
1141 1158 2.042843 GGAGGAGGAAGAGCGGGA 60.043 66.667 0.00 0.00 0.00 5.14
1142 1159 2.131067 GGAGGAGGAAGAGCGGGAG 61.131 68.421 0.00 0.00 0.00 4.30
1143 1160 2.042435 AGGAGGAAGAGCGGGAGG 60.042 66.667 0.00 0.00 0.00 4.30
1144 1161 2.042843 GGAGGAAGAGCGGGAGGA 60.043 66.667 0.00 0.00 0.00 3.71
1145 1162 2.131067 GGAGGAAGAGCGGGAGGAG 61.131 68.421 0.00 0.00 0.00 3.69
1146 1163 2.762043 AGGAAGAGCGGGAGGAGC 60.762 66.667 0.00 0.00 0.00 4.70
1267 1284 2.301583 GTGAGTCCTTCTCTTCTGCCTT 59.698 50.000 0.00 0.00 43.13 4.35
1268 1285 2.301296 TGAGTCCTTCTCTTCTGCCTTG 59.699 50.000 0.00 0.00 43.13 3.61
1269 1286 2.564947 GAGTCCTTCTCTTCTGCCTTGA 59.435 50.000 0.00 0.00 39.86 3.02
1270 1287 3.180507 AGTCCTTCTCTTCTGCCTTGAT 58.819 45.455 0.00 0.00 0.00 2.57
1273 1290 2.548875 CTTCTCTTCTGCCTTGATCGG 58.451 52.381 0.00 0.00 0.00 4.18
1279 1296 1.079127 CTGCCTTGATCGGTCGGTT 60.079 57.895 0.00 0.00 0.00 4.44
1297 1314 3.674753 CGGTTATTTGCTCTGCTTTTTGG 59.325 43.478 0.00 0.00 0.00 3.28
1303 1321 2.106566 TGCTCTGCTTTTTGGTTTCCA 58.893 42.857 0.00 0.00 0.00 3.53
1488 1507 2.356313 CCGGCGATCCCTCATTCG 60.356 66.667 9.30 0.00 38.37 3.34
1491 1510 1.490693 CGGCGATCCCTCATTCGTTG 61.491 60.000 0.00 0.00 37.66 4.10
1496 1515 3.312828 CGATCCCTCATTCGTTGATCTC 58.687 50.000 0.00 0.00 32.72 2.75
1502 1521 1.204704 TCATTCGTTGATCTCGGTGCT 59.795 47.619 9.99 0.00 0.00 4.40
1503 1522 1.325640 CATTCGTTGATCTCGGTGCTG 59.674 52.381 9.99 1.98 0.00 4.41
1504 1523 0.317160 TTCGTTGATCTCGGTGCTGT 59.683 50.000 9.99 0.00 0.00 4.40
1505 1524 1.170442 TCGTTGATCTCGGTGCTGTA 58.830 50.000 9.99 0.00 0.00 2.74
1507 1526 2.120232 CGTTGATCTCGGTGCTGTATC 58.880 52.381 0.00 0.00 0.00 2.24
1508 1527 2.479560 CGTTGATCTCGGTGCTGTATCA 60.480 50.000 0.00 0.00 0.00 2.15
1509 1528 2.860735 GTTGATCTCGGTGCTGTATCAC 59.139 50.000 0.00 0.00 36.28 3.06
1515 1534 1.594833 GGTGCTGTATCACCGACCA 59.405 57.895 0.00 0.00 45.95 4.02
1516 1535 0.460284 GGTGCTGTATCACCGACCAG 60.460 60.000 0.00 0.00 45.95 4.00
1519 1538 1.878522 CTGTATCACCGACCAGCGC 60.879 63.158 0.00 0.00 39.11 5.92
1533 1555 2.893895 GCGCTGATGCTGCTGCTA 60.894 61.111 17.00 3.79 40.48 3.49
1610 1632 4.533919 TCGTGGAGGTAACCGAATTTTA 57.466 40.909 0.00 0.00 37.17 1.52
1618 1640 8.323567 TGGAGGTAACCGAATTTTAAGAGTTAT 58.676 33.333 0.00 0.00 37.17 1.89
1619 1641 9.822185 GGAGGTAACCGAATTTTAAGAGTTATA 57.178 33.333 0.00 0.00 37.17 0.98
1625 1647 9.783256 AACCGAATTTTAAGAGTTATAATGTGC 57.217 29.630 0.00 0.00 0.00 4.57
1627 1649 9.781834 CCGAATTTTAAGAGTTATAATGTGCAA 57.218 29.630 0.00 0.00 0.00 4.08
1669 1691 6.186957 AGCACATCTGTAGGATATCTCTAGG 58.813 44.000 2.05 0.38 32.64 3.02
1738 1760 6.983906 AAATATCCATTCCCCTTCACATTC 57.016 37.500 0.00 0.00 0.00 2.67
1739 1761 5.937492 ATATCCATTCCCCTTCACATTCT 57.063 39.130 0.00 0.00 0.00 2.40
1740 1762 3.652057 TCCATTCCCCTTCACATTCTC 57.348 47.619 0.00 0.00 0.00 2.87
1741 1763 3.192944 TCCATTCCCCTTCACATTCTCT 58.807 45.455 0.00 0.00 0.00 3.10
1831 1872 3.894257 GTGTGTGCACAGCTCTCTA 57.106 52.632 22.40 0.00 44.64 2.43
1835 1876 0.826715 TGTGCACAGCTCTCTATCCC 59.173 55.000 17.42 0.00 0.00 3.85
1837 1878 1.050988 TGCACAGCTCTCTATCCCCC 61.051 60.000 0.00 0.00 0.00 5.40
1845 1886 4.533707 CAGCTCTCTATCCCCCAAATATCA 59.466 45.833 0.00 0.00 0.00 2.15
1850 1891 7.406620 TCTCTATCCCCCAAATATCAAATGT 57.593 36.000 0.00 0.00 0.00 2.71
1857 1898 9.667607 ATCCCCCAAATATCAAATGTGTTTATA 57.332 29.630 0.00 0.00 0.00 0.98
1858 1899 9.667607 TCCCCCAAATATCAAATGTGTTTATAT 57.332 29.630 0.00 0.00 0.00 0.86
1859 1900 9.709495 CCCCCAAATATCAAATGTGTTTATATG 57.291 33.333 0.00 0.00 0.00 1.78
1874 1915 9.778741 TGTGTTTATATGAAAAAGAGAGACAGT 57.221 29.630 0.00 0.00 0.00 3.55
1898 1939 9.389755 AGTAGTAGTAACTAGTAACTTAGTGCC 57.610 37.037 0.00 0.00 39.60 5.01
1910 1952 3.131396 ACTTAGTGCCAAACTCTGAACG 58.869 45.455 0.00 0.00 40.56 3.95
1911 1953 2.902705 TAGTGCCAAACTCTGAACGT 57.097 45.000 0.00 0.00 40.56 3.99
1912 1954 2.038387 AGTGCCAAACTCTGAACGTT 57.962 45.000 0.00 0.00 31.64 3.99
1913 1955 1.670811 AGTGCCAAACTCTGAACGTTG 59.329 47.619 5.00 0.00 31.64 4.10
2004 2046 3.910627 AGGACAGGTAGGTCTCATTGTTT 59.089 43.478 0.00 0.00 37.91 2.83
2057 2130 2.189342 CATTCCAAACACGCGTTTTGT 58.811 42.857 28.32 16.93 42.82 2.83
2148 2257 2.304180 CAAGTGGGAGAAGTGACTGGAT 59.696 50.000 0.00 0.00 0.00 3.41
2180 2289 4.277515 TGATGATTATGCAGTAGGCCTC 57.722 45.455 9.68 0.21 43.89 4.70
2181 2290 3.647590 TGATGATTATGCAGTAGGCCTCA 59.352 43.478 9.68 0.00 43.89 3.86
2182 2291 4.287845 TGATGATTATGCAGTAGGCCTCAT 59.712 41.667 9.68 9.52 43.89 2.90
2183 2292 4.011966 TGATTATGCAGTAGGCCTCATG 57.988 45.455 9.68 11.12 43.89 3.07
2184 2293 3.647590 TGATTATGCAGTAGGCCTCATGA 59.352 43.478 9.68 3.41 43.89 3.07
2185 2294 3.758755 TTATGCAGTAGGCCTCATGAG 57.241 47.619 9.68 16.24 43.89 2.90
2186 2295 1.504912 ATGCAGTAGGCCTCATGAGT 58.495 50.000 21.11 5.78 43.89 3.41
2200 2316 3.117745 TCATGAGTCATGACCCTGGAAT 58.882 45.455 28.18 1.35 44.60 3.01
2285 2402 6.401047 TCAACGAGGACTATATGTAAAGGG 57.599 41.667 0.00 0.00 0.00 3.95
2299 2419 2.664402 AAAGGGCACAGAGACATGTT 57.336 45.000 0.00 0.00 0.00 2.71
2460 2586 2.557059 TACTGTGCATCACCTCGGCG 62.557 60.000 0.00 0.00 32.73 6.46
2507 2633 1.081892 TCGTCACCGCTACTACACTC 58.918 55.000 0.00 0.00 0.00 3.51
2512 2638 1.271379 CACCGCTACTACACTCCACAA 59.729 52.381 0.00 0.00 0.00 3.33
2520 2646 5.915758 GCTACTACACTCCACAAATATCTCG 59.084 44.000 0.00 0.00 0.00 4.04
2550 2676 0.958822 GTCCACCGGCACAATTTTCT 59.041 50.000 0.00 0.00 0.00 2.52
2587 2713 4.690184 TTTCACAACTATCTCGCGACTA 57.310 40.909 3.71 0.00 0.00 2.59
2588 2714 3.946308 TCACAACTATCTCGCGACTAG 57.054 47.619 3.71 11.95 0.00 2.57
2606 2732 6.703857 CGACTAGACACTACACACATACTAC 58.296 44.000 0.00 0.00 0.00 2.73
2630 2756 1.064134 CGAGTCATCGTCCATCGCA 59.936 57.895 0.00 0.00 44.09 5.10
2633 2759 1.592669 GTCATCGTCCATCGCAGGG 60.593 63.158 0.00 0.00 39.67 4.45
2634 2760 2.280389 CATCGTCCATCGCAGGGG 60.280 66.667 0.00 0.00 39.67 4.79
2635 2761 4.241555 ATCGTCCATCGCAGGGGC 62.242 66.667 0.00 0.00 39.67 5.80
2646 2772 2.851102 CAGGGGCGGATCCAGGAT 60.851 66.667 13.41 0.00 36.21 3.24
2647 2773 2.039405 AGGGGCGGATCCAGGATT 60.039 61.111 13.41 0.00 36.21 3.01
2648 2774 2.113986 GGGGCGGATCCAGGATTG 59.886 66.667 13.41 0.62 36.21 2.67
2649 2775 2.452064 GGGGCGGATCCAGGATTGA 61.452 63.158 13.41 0.00 36.21 2.57
2650 2776 1.072159 GGGCGGATCCAGGATTGAG 59.928 63.158 13.41 0.00 36.21 3.02
2651 2777 1.599240 GGCGGATCCAGGATTGAGC 60.599 63.158 13.41 9.51 34.01 4.26
2652 2778 1.599240 GCGGATCCAGGATTGAGCC 60.599 63.158 13.41 0.00 34.94 4.70
2653 2779 2.049627 GCGGATCCAGGATTGAGCCT 62.050 60.000 13.41 0.00 36.14 4.58
2654 2780 0.034616 CGGATCCAGGATTGAGCCTC 59.965 60.000 13.41 0.00 36.14 4.70
2655 2781 0.034616 GGATCCAGGATTGAGCCTCG 59.965 60.000 6.95 0.00 35.66 4.63
2656 2782 0.602372 GATCCAGGATTGAGCCTCGC 60.602 60.000 2.53 0.00 35.66 5.03
2657 2783 2.049627 ATCCAGGATTGAGCCTCGCC 62.050 60.000 0.00 0.00 35.66 5.54
2658 2784 2.203126 CAGGATTGAGCCTCGCCC 60.203 66.667 0.00 0.00 35.66 6.13
2659 2785 3.483869 AGGATTGAGCCTCGCCCC 61.484 66.667 0.00 0.00 30.76 5.80
2660 2786 4.918201 GGATTGAGCCTCGCCCCG 62.918 72.222 0.00 0.00 0.00 5.73
2661 2787 4.918201 GATTGAGCCTCGCCCCGG 62.918 72.222 0.00 0.00 0.00 5.73
2676 2802 4.424711 CGGGCCCCAAGCTTGCTA 62.425 66.667 21.43 0.00 43.05 3.49
2677 2803 2.755876 GGGCCCCAAGCTTGCTAC 60.756 66.667 21.43 11.17 43.05 3.58
2678 2804 2.035626 GGCCCCAAGCTTGCTACA 59.964 61.111 21.43 0.00 43.05 2.74
2679 2805 2.048603 GGCCCCAAGCTTGCTACAG 61.049 63.158 21.43 6.80 43.05 2.74
2680 2806 1.303643 GCCCCAAGCTTGCTACAGT 60.304 57.895 21.43 0.00 38.99 3.55
2681 2807 1.589716 GCCCCAAGCTTGCTACAGTG 61.590 60.000 21.43 5.31 38.99 3.66
2682 2808 0.250901 CCCCAAGCTTGCTACAGTGT 60.251 55.000 21.43 0.00 0.00 3.55
2683 2809 1.160137 CCCAAGCTTGCTACAGTGTC 58.840 55.000 21.43 0.00 0.00 3.67
2684 2810 1.543208 CCCAAGCTTGCTACAGTGTCA 60.543 52.381 21.43 0.00 0.00 3.58
2685 2811 1.802960 CCAAGCTTGCTACAGTGTCAG 59.197 52.381 21.43 0.00 0.00 3.51
2686 2812 1.196354 CAAGCTTGCTACAGTGTCAGC 59.804 52.381 14.65 8.33 38.31 4.26
2687 2813 0.394192 AGCTTGCTACAGTGTCAGCA 59.606 50.000 17.87 17.87 45.72 4.41
2688 2814 0.514691 GCTTGCTACAGTGTCAGCAC 59.485 55.000 20.16 10.94 46.97 4.40
2689 2815 1.869774 CTTGCTACAGTGTCAGCACA 58.130 50.000 20.16 13.42 46.97 4.57
2690 2816 2.212652 CTTGCTACAGTGTCAGCACAA 58.787 47.619 20.16 10.74 46.97 3.33
2691 2817 2.810274 CTTGCTACAGTGTCAGCACAAT 59.190 45.455 20.16 0.00 46.97 2.71
2708 2834 5.263185 GCACAATGCTAAATAGTACCAACG 58.737 41.667 0.00 0.00 40.96 4.10
2709 2835 5.729454 GCACAATGCTAAATAGTACCAACGG 60.729 44.000 0.00 0.00 40.96 4.44
2710 2836 5.353123 CACAATGCTAAATAGTACCAACGGT 59.647 40.000 0.00 0.00 40.16 4.83
2711 2837 5.353123 ACAATGCTAAATAGTACCAACGGTG 59.647 40.000 0.00 0.00 36.19 4.94
2712 2838 3.264104 TGCTAAATAGTACCAACGGTGC 58.736 45.455 0.00 0.00 38.59 5.01
2718 2844 1.335145 AGTACCAACGGTGCTACAGT 58.665 50.000 8.57 0.00 46.31 3.55
2719 2845 2.517959 AGTACCAACGGTGCTACAGTA 58.482 47.619 8.57 0.00 46.31 2.74
2720 2846 3.094572 AGTACCAACGGTGCTACAGTAT 58.905 45.455 8.57 0.00 46.31 2.12
2721 2847 4.272489 AGTACCAACGGTGCTACAGTATA 58.728 43.478 8.57 0.00 46.31 1.47
2722 2848 4.891756 AGTACCAACGGTGCTACAGTATAT 59.108 41.667 8.57 0.00 46.31 0.86
2723 2849 4.054780 ACCAACGGTGCTACAGTATATG 57.945 45.455 0.00 0.00 32.98 1.78
2724 2850 3.702548 ACCAACGGTGCTACAGTATATGA 59.297 43.478 0.00 0.00 32.98 2.15
2725 2851 4.160814 ACCAACGGTGCTACAGTATATGAA 59.839 41.667 0.00 0.00 32.98 2.57
2726 2852 4.745125 CCAACGGTGCTACAGTATATGAAG 59.255 45.833 0.00 0.00 0.00 3.02
2727 2853 4.585955 ACGGTGCTACAGTATATGAAGG 57.414 45.455 0.00 0.00 0.00 3.46
2728 2854 4.212716 ACGGTGCTACAGTATATGAAGGA 58.787 43.478 0.00 0.00 0.00 3.36
2729 2855 4.647853 ACGGTGCTACAGTATATGAAGGAA 59.352 41.667 0.00 0.00 0.00 3.36
2730 2856 4.982916 CGGTGCTACAGTATATGAAGGAAC 59.017 45.833 0.00 0.00 0.00 3.62
2732 2858 5.986135 GGTGCTACAGTATATGAAGGAACTG 59.014 44.000 0.00 0.00 43.90 3.16
2733 2859 5.463724 GTGCTACAGTATATGAAGGAACTGC 59.536 44.000 1.43 0.00 42.44 4.40
2734 2860 5.363868 TGCTACAGTATATGAAGGAACTGCT 59.636 40.000 1.43 0.00 42.44 4.24
2735 2861 5.923684 GCTACAGTATATGAAGGAACTGCTC 59.076 44.000 1.43 0.00 42.44 4.26
2736 2862 5.283457 ACAGTATATGAAGGAACTGCTCC 57.717 43.478 1.43 0.00 42.44 4.70
2743 2869 4.232310 GGAACTGCTCCTCATGCC 57.768 61.111 0.00 0.00 41.61 4.40
2744 2870 1.452833 GGAACTGCTCCTCATGCCC 60.453 63.158 0.00 0.00 41.61 5.36
2745 2871 1.452833 GAACTGCTCCTCATGCCCC 60.453 63.158 0.00 0.00 0.00 5.80
2746 2872 3.335356 AACTGCTCCTCATGCCCCG 62.335 63.158 0.00 0.00 0.00 5.73
2747 2873 4.559063 CTGCTCCTCATGCCCCGG 62.559 72.222 0.00 0.00 0.00 5.73
2777 2903 3.866582 CGGCCTGGGTCCTGGATC 61.867 72.222 15.84 0.00 37.23 3.36
2778 2904 3.493303 GGCCTGGGTCCTGGATCC 61.493 72.222 19.55 19.55 37.23 3.36
2779 2905 3.866582 GCCTGGGTCCTGGATCCG 61.867 72.222 20.81 14.77 35.15 4.18
2780 2906 3.866582 CCTGGGTCCTGGATCCGC 61.867 72.222 20.81 7.87 35.15 5.54
2781 2907 3.866582 CTGGGTCCTGGATCCGCC 61.867 72.222 20.81 7.01 35.15 6.13
2782 2908 4.731853 TGGGTCCTGGATCCGCCA 62.732 66.667 20.81 0.56 46.96 5.69
2783 2909 4.176752 GGGTCCTGGATCCGCCAC 62.177 72.222 10.91 2.70 43.33 5.01
2784 2910 3.083997 GGTCCTGGATCCGCCACT 61.084 66.667 7.39 0.00 43.33 4.00
2785 2911 2.187946 GTCCTGGATCCGCCACTG 59.812 66.667 7.39 0.00 43.33 3.66
2786 2912 3.083349 TCCTGGATCCGCCACTGG 61.083 66.667 7.39 2.59 43.33 4.00
2787 2913 3.402681 CCTGGATCCGCCACTGGT 61.403 66.667 7.39 0.00 43.33 4.00
2788 2914 2.187946 CTGGATCCGCCACTGGTC 59.812 66.667 7.39 0.00 43.33 4.02
2789 2915 3.391665 CTGGATCCGCCACTGGTCC 62.392 68.421 7.39 0.00 43.33 4.46
2790 2916 3.399181 GGATCCGCCACTGGTCCA 61.399 66.667 0.00 0.00 36.34 4.02
2791 2917 2.746375 GGATCCGCCACTGGTCCAT 61.746 63.158 0.00 0.00 36.34 3.41
2792 2918 1.227674 GATCCGCCACTGGTCCATC 60.228 63.158 0.00 0.00 0.00 3.51
2793 2919 2.978452 GATCCGCCACTGGTCCATCG 62.978 65.000 0.00 0.00 0.00 3.84
2794 2920 4.082523 CCGCCACTGGTCCATCGT 62.083 66.667 0.00 0.00 0.00 3.73
2795 2921 2.047274 CGCCACTGGTCCATCGTT 60.047 61.111 0.00 0.00 0.00 3.85
2796 2922 2.390599 CGCCACTGGTCCATCGTTG 61.391 63.158 0.00 0.00 0.00 4.10
2797 2923 2.040544 GCCACTGGTCCATCGTTGG 61.041 63.158 6.15 6.15 45.15 3.77
2807 2933 1.165270 CCATCGTTGGAGGTTGTTCC 58.835 55.000 6.68 0.00 46.92 3.62
2812 2938 0.179040 GTTGGAGGTTGTTCCGGACA 60.179 55.000 1.83 2.59 40.27 4.02
2816 2942 1.544759 GGAGGTTGTTCCGGACATTGT 60.545 52.381 1.83 0.00 41.99 2.71
2885 3012 4.261197 GCAAAAGAAAGAGTCAACGTCCAT 60.261 41.667 0.00 0.00 0.00 3.41
2917 3044 6.612247 TGTTCACAATTATCTGTTTGACGT 57.388 33.333 0.00 0.00 0.00 4.34
2925 3052 6.903883 ATTATCTGTTTGACGTGGTGATAC 57.096 37.500 0.00 0.00 0.00 2.24
2962 3089 2.007608 GTAGCCCGATCTTCACAAACC 58.992 52.381 0.00 0.00 0.00 3.27
2981 3108 2.620251 CGAAGGTGCATTCCAGGATA 57.380 50.000 0.00 0.00 0.00 2.59
3011 3139 5.221244 GGAGCAATTGTAAGGAAACACAAGT 60.221 40.000 7.40 0.00 38.01 3.16
3034 3162 4.083581 CGTAGCCCTCAAAGACAAATTG 57.916 45.455 0.00 0.00 0.00 2.32
3039 3167 3.555586 GCCCTCAAAGACAAATTGCACAT 60.556 43.478 0.00 0.00 0.00 3.21
3041 3169 4.021719 CCCTCAAAGACAAATTGCACATCT 60.022 41.667 0.00 0.00 0.00 2.90
3048 3176 9.199982 CAAAGACAAATTGCACATCTAAATCTT 57.800 29.630 0.00 0.00 0.00 2.40
3049 3177 9.768662 AAAGACAAATTGCACATCTAAATCTTT 57.231 25.926 0.00 0.00 0.00 2.52
3059 3187 8.959548 TGCACATCTAAATCTTTCATAACACAT 58.040 29.630 0.00 0.00 0.00 3.21
3084 3212 7.732025 TGTCAATACAAGAGGAACAGTTAGAA 58.268 34.615 0.00 0.00 30.91 2.10
3093 3221 5.293569 AGAGGAACAGTTAGAACAAACAACG 59.706 40.000 0.00 0.00 0.00 4.10
3115 3244 8.523464 CAACGAACAAAGAAATAAGACAACAAG 58.477 33.333 0.00 0.00 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.627737 CCCGGGATCGATCGTCCTC 61.628 68.421 18.48 16.87 39.00 3.71
1 2 2.597805 CCCGGGATCGATCGTCCT 60.598 66.667 18.48 10.76 39.00 3.85
2 3 4.359455 GCCCGGGATCGATCGTCC 62.359 72.222 29.31 21.37 39.00 4.79
3 4 4.702081 CGCCCGGGATCGATCGTC 62.702 72.222 29.31 12.39 39.00 4.20
48 49 4.467084 TTGTCGCCGCCAGGGATC 62.467 66.667 0.00 0.00 39.98 3.36
49 50 4.778143 GTTGTCGCCGCCAGGGAT 62.778 66.667 0.00 0.00 39.98 3.85
53 54 3.853330 CATCGTTGTCGCCGCCAG 61.853 66.667 0.00 0.00 36.96 4.85
54 55 4.365505 TCATCGTTGTCGCCGCCA 62.366 61.111 0.00 0.00 36.96 5.69
55 56 3.554692 CTCATCGTTGTCGCCGCC 61.555 66.667 0.00 0.00 36.96 6.13
56 57 3.554692 CCTCATCGTTGTCGCCGC 61.555 66.667 0.00 0.00 36.96 6.53
57 58 2.885644 CCCTCATCGTTGTCGCCG 60.886 66.667 0.00 0.00 36.96 6.46
58 59 2.511600 CCCCTCATCGTTGTCGCC 60.512 66.667 0.00 0.00 36.96 5.54
59 60 3.195698 GCCCCTCATCGTTGTCGC 61.196 66.667 0.00 0.00 36.96 5.19
60 61 2.885644 CGCCCCTCATCGTTGTCG 60.886 66.667 0.00 0.00 38.55 4.35
61 62 2.511600 CCGCCCCTCATCGTTGTC 60.512 66.667 0.00 0.00 0.00 3.18
62 63 4.778143 GCCGCCCCTCATCGTTGT 62.778 66.667 0.00 0.00 0.00 3.32
63 64 4.473520 AGCCGCCCCTCATCGTTG 62.474 66.667 0.00 0.00 0.00 4.10
64 65 4.162690 GAGCCGCCCCTCATCGTT 62.163 66.667 0.00 0.00 0.00 3.85
66 67 3.798954 GAAGAGCCGCCCCTCATCG 62.799 68.421 1.65 0.00 34.26 3.84
67 68 1.977293 AAGAAGAGCCGCCCCTCATC 61.977 60.000 1.65 0.00 34.26 2.92
68 69 1.997874 AAGAAGAGCCGCCCCTCAT 60.998 57.895 1.65 0.00 34.26 2.90
69 70 2.607750 AAGAAGAGCCGCCCCTCA 60.608 61.111 1.65 0.00 34.26 3.86
70 71 2.124942 CAAGAAGAGCCGCCCCTC 60.125 66.667 0.00 0.00 0.00 4.30
71 72 4.416738 GCAAGAAGAGCCGCCCCT 62.417 66.667 0.00 0.00 0.00 4.79
72 73 4.416738 AGCAAGAAGAGCCGCCCC 62.417 66.667 0.00 0.00 0.00 5.80
73 74 3.130160 CAGCAAGAAGAGCCGCCC 61.130 66.667 0.00 0.00 0.00 6.13
74 75 2.883267 ATCCAGCAAGAAGAGCCGCC 62.883 60.000 0.00 0.00 0.00 6.13
75 76 1.435408 GATCCAGCAAGAAGAGCCGC 61.435 60.000 0.00 0.00 0.00 6.53
76 77 1.150567 CGATCCAGCAAGAAGAGCCG 61.151 60.000 0.00 0.00 0.00 5.52
77 78 0.813210 CCGATCCAGCAAGAAGAGCC 60.813 60.000 0.00 0.00 0.00 4.70
78 79 0.813210 CCCGATCCAGCAAGAAGAGC 60.813 60.000 0.00 0.00 0.00 4.09
79 80 0.826715 TCCCGATCCAGCAAGAAGAG 59.173 55.000 0.00 0.00 0.00 2.85
80 81 0.826715 CTCCCGATCCAGCAAGAAGA 59.173 55.000 0.00 0.00 0.00 2.87
81 82 0.179062 CCTCCCGATCCAGCAAGAAG 60.179 60.000 0.00 0.00 0.00 2.85
82 83 1.626356 CCCTCCCGATCCAGCAAGAA 61.626 60.000 0.00 0.00 0.00 2.52
83 84 2.066393 CCCTCCCGATCCAGCAAGA 61.066 63.158 0.00 0.00 0.00 3.02
84 85 2.507944 CCCTCCCGATCCAGCAAG 59.492 66.667 0.00 0.00 0.00 4.01
85 86 3.089874 CCCCTCCCGATCCAGCAA 61.090 66.667 0.00 0.00 0.00 3.91
398 399 3.854669 CCCTCCGCCACAGCTAGG 61.855 72.222 0.03 0.03 38.77 3.02
399 400 3.077556 ACCCTCCGCCACAGCTAG 61.078 66.667 0.00 0.00 36.60 3.42
400 401 3.390521 CACCCTCCGCCACAGCTA 61.391 66.667 0.00 0.00 36.60 3.32
402 403 4.767255 CTCACCCTCCGCCACAGC 62.767 72.222 0.00 0.00 0.00 4.40
403 404 4.087892 CCTCACCCTCCGCCACAG 62.088 72.222 0.00 0.00 0.00 3.66
436 437 0.589729 CAAATCTGCGGGCGAAATCG 60.590 55.000 0.00 0.00 43.27 3.34
437 438 0.248621 CCAAATCTGCGGGCGAAATC 60.249 55.000 0.00 0.00 0.00 2.17
438 439 1.809207 CCAAATCTGCGGGCGAAAT 59.191 52.632 0.00 0.00 0.00 2.17
439 440 2.988688 GCCAAATCTGCGGGCGAAA 61.989 57.895 0.00 0.00 38.04 3.46
440 441 3.439540 GCCAAATCTGCGGGCGAA 61.440 61.111 0.00 0.00 38.04 4.70
445 446 2.063541 GATTCCGGCCAAATCTGCGG 62.064 60.000 16.89 4.31 31.73 5.69
446 447 1.356624 GATTCCGGCCAAATCTGCG 59.643 57.895 16.89 0.00 31.73 5.18
447 448 1.356624 CGATTCCGGCCAAATCTGC 59.643 57.895 20.07 2.07 32.15 4.26
471 472 1.623542 ATAGGTTCTGCCCGTCCACC 61.624 60.000 0.00 0.00 38.26 4.61
472 473 0.462047 CATAGGTTCTGCCCGTCCAC 60.462 60.000 0.00 0.00 38.26 4.02
473 474 1.622607 CCATAGGTTCTGCCCGTCCA 61.623 60.000 0.00 0.00 38.26 4.02
474 475 1.146263 CCATAGGTTCTGCCCGTCC 59.854 63.158 0.00 0.00 38.26 4.79
475 476 1.523938 GCCATAGGTTCTGCCCGTC 60.524 63.158 0.00 0.00 38.26 4.79
476 477 2.590092 GCCATAGGTTCTGCCCGT 59.410 61.111 0.00 0.00 38.26 5.28
477 478 2.588877 CGCCATAGGTTCTGCCCG 60.589 66.667 0.00 0.00 38.26 6.13
478 479 2.203209 CCGCCATAGGTTCTGCCC 60.203 66.667 0.00 0.00 38.26 5.36
479 480 2.203209 CCCGCCATAGGTTCTGCC 60.203 66.667 0.00 0.00 37.58 4.85
480 481 2.902343 GCCCGCCATAGGTTCTGC 60.902 66.667 0.00 0.00 0.00 4.26
481 482 2.588877 CGCCCGCCATAGGTTCTG 60.589 66.667 0.00 0.00 0.00 3.02
482 483 2.762459 TCGCCCGCCATAGGTTCT 60.762 61.111 0.00 0.00 0.00 3.01
483 484 2.588034 GTCGCCCGCCATAGGTTC 60.588 66.667 0.00 0.00 0.00 3.62
484 485 4.524318 CGTCGCCCGCCATAGGTT 62.524 66.667 0.00 0.00 0.00 3.50
497 498 4.796231 CACCTCCTTCCGCCGTCG 62.796 72.222 0.00 0.00 0.00 5.12
498 499 4.452733 CCACCTCCTTCCGCCGTC 62.453 72.222 0.00 0.00 0.00 4.79
502 503 2.821679 CTTTCCCCACCTCCTTCCGC 62.822 65.000 0.00 0.00 0.00 5.54
503 504 1.299976 CTTTCCCCACCTCCTTCCG 59.700 63.158 0.00 0.00 0.00 4.30
504 505 1.691823 CCTTTCCCCACCTCCTTCC 59.308 63.158 0.00 0.00 0.00 3.46
505 506 1.691823 CCCTTTCCCCACCTCCTTC 59.308 63.158 0.00 0.00 0.00 3.46
506 507 1.857348 CCCCTTTCCCCACCTCCTT 60.857 63.158 0.00 0.00 0.00 3.36
507 508 2.204306 CCCCTTTCCCCACCTCCT 60.204 66.667 0.00 0.00 0.00 3.69
508 509 4.062032 GCCCCTTTCCCCACCTCC 62.062 72.222 0.00 0.00 0.00 4.30
509 510 4.426313 CGCCCCTTTCCCCACCTC 62.426 72.222 0.00 0.00 0.00 3.85
517 518 3.894547 TTCAGTCCGCGCCCCTTTC 62.895 63.158 0.00 0.00 0.00 2.62
518 519 2.764637 ATTTCAGTCCGCGCCCCTTT 62.765 55.000 0.00 0.00 0.00 3.11
519 520 3.268103 ATTTCAGTCCGCGCCCCTT 62.268 57.895 0.00 0.00 0.00 3.95
520 521 3.717294 ATTTCAGTCCGCGCCCCT 61.717 61.111 0.00 0.00 0.00 4.79
521 522 3.508840 CATTTCAGTCCGCGCCCC 61.509 66.667 0.00 0.00 0.00 5.80
522 523 2.746277 ACATTTCAGTCCGCGCCC 60.746 61.111 0.00 0.00 0.00 6.13
523 524 2.785258 GACATTTCAGTCCGCGCC 59.215 61.111 0.00 0.00 32.36 6.53
529 530 0.744771 GCGGGAGGGACATTTCAGTC 60.745 60.000 0.00 0.00 37.80 3.51
530 531 1.299976 GCGGGAGGGACATTTCAGT 59.700 57.895 0.00 0.00 0.00 3.41
531 532 1.452108 GGCGGGAGGGACATTTCAG 60.452 63.158 0.00 0.00 0.00 3.02
532 533 1.784301 TTGGCGGGAGGGACATTTCA 61.784 55.000 0.00 0.00 0.00 2.69
533 534 1.001393 TTGGCGGGAGGGACATTTC 60.001 57.895 0.00 0.00 0.00 2.17
534 535 1.304134 GTTGGCGGGAGGGACATTT 60.304 57.895 0.00 0.00 0.00 2.32
535 536 2.355115 GTTGGCGGGAGGGACATT 59.645 61.111 0.00 0.00 0.00 2.71
536 537 3.728373 GGTTGGCGGGAGGGACAT 61.728 66.667 0.00 0.00 0.00 3.06
547 548 2.556287 CGAAGTGAAGCGGTTGGC 59.444 61.111 3.70 0.00 44.05 4.52
548 549 3.253955 CCGAAGTGAAGCGGTTGG 58.746 61.111 3.70 0.00 42.49 3.77
553 554 0.810031 CCCCATACCGAAGTGAAGCG 60.810 60.000 0.00 0.00 0.00 4.68
554 555 1.095807 GCCCCATACCGAAGTGAAGC 61.096 60.000 0.00 0.00 0.00 3.86
555 556 0.251916 TGCCCCATACCGAAGTGAAG 59.748 55.000 0.00 0.00 0.00 3.02
556 557 0.035820 GTGCCCCATACCGAAGTGAA 60.036 55.000 0.00 0.00 0.00 3.18
557 558 0.907704 AGTGCCCCATACCGAAGTGA 60.908 55.000 0.00 0.00 0.00 3.41
558 559 0.744414 CAGTGCCCCATACCGAAGTG 60.744 60.000 0.00 0.00 0.00 3.16
559 560 1.198759 ACAGTGCCCCATACCGAAGT 61.199 55.000 0.00 0.00 0.00 3.01
560 561 0.828022 TACAGTGCCCCATACCGAAG 59.172 55.000 0.00 0.00 0.00 3.79
561 562 0.828022 CTACAGTGCCCCATACCGAA 59.172 55.000 0.00 0.00 0.00 4.30
562 563 1.046472 CCTACAGTGCCCCATACCGA 61.046 60.000 0.00 0.00 0.00 4.69
563 564 1.445942 CCTACAGTGCCCCATACCG 59.554 63.158 0.00 0.00 0.00 4.02
564 565 1.705997 CCCCTACAGTGCCCCATACC 61.706 65.000 0.00 0.00 0.00 2.73
565 566 1.837090 CCCCTACAGTGCCCCATAC 59.163 63.158 0.00 0.00 0.00 2.39
566 567 2.076184 GCCCCTACAGTGCCCCATA 61.076 63.158 0.00 0.00 0.00 2.74
567 568 3.420482 GCCCCTACAGTGCCCCAT 61.420 66.667 0.00 0.00 0.00 4.00
570 571 4.162690 CTCGCCCCTACAGTGCCC 62.163 72.222 0.00 0.00 0.00 5.36
571 572 4.162690 CCTCGCCCCTACAGTGCC 62.163 72.222 0.00 0.00 0.00 5.01
572 573 4.840005 GCCTCGCCCCTACAGTGC 62.840 72.222 0.00 0.00 0.00 4.40
573 574 4.514577 CGCCTCGCCCCTACAGTG 62.515 72.222 0.00 0.00 0.00 3.66
574 575 4.753662 TCGCCTCGCCCCTACAGT 62.754 66.667 0.00 0.00 0.00 3.55
575 576 2.515996 TTTTCGCCTCGCCCCTACAG 62.516 60.000 0.00 0.00 0.00 2.74
576 577 2.585341 TTTTCGCCTCGCCCCTACA 61.585 57.895 0.00 0.00 0.00 2.74
577 578 2.104859 GTTTTCGCCTCGCCCCTAC 61.105 63.158 0.00 0.00 0.00 3.18
578 579 2.266689 GTTTTCGCCTCGCCCCTA 59.733 61.111 0.00 0.00 0.00 3.53
579 580 4.717313 GGTTTTCGCCTCGCCCCT 62.717 66.667 0.00 0.00 0.00 4.79
589 590 4.561735 ACCATATATTTGCGGGTTTTCG 57.438 40.909 0.00 0.00 0.00 3.46
590 591 5.522097 CCAAACCATATATTTGCGGGTTTTC 59.478 40.000 12.28 0.00 46.59 2.29
591 592 5.423886 CCAAACCATATATTTGCGGGTTTT 58.576 37.500 12.28 0.29 46.59 2.43
593 594 3.386402 CCCAAACCATATATTTGCGGGTT 59.614 43.478 6.23 0.00 43.33 4.11
594 595 2.962421 CCCAAACCATATATTTGCGGGT 59.038 45.455 6.23 0.00 36.01 5.28
595 596 2.298729 CCCCAAACCATATATTTGCGGG 59.701 50.000 15.89 15.89 39.28 6.13
596 597 2.288763 GCCCCAAACCATATATTTGCGG 60.289 50.000 9.50 9.50 37.82 5.69
597 598 2.288763 GGCCCCAAACCATATATTTGCG 60.289 50.000 0.00 0.00 36.01 4.85
598 599 2.703007 TGGCCCCAAACCATATATTTGC 59.297 45.455 0.00 0.00 36.01 3.68
599 600 4.653341 TCTTGGCCCCAAACCATATATTTG 59.347 41.667 0.00 5.13 36.96 2.32
600 601 4.889780 TCTTGGCCCCAAACCATATATTT 58.110 39.130 0.00 0.00 36.96 1.40
601 602 4.551215 TCTTGGCCCCAAACCATATATT 57.449 40.909 0.00 0.00 36.96 1.28
602 603 4.765195 ATCTTGGCCCCAAACCATATAT 57.235 40.909 0.00 0.00 36.96 0.86
603 604 4.551215 AATCTTGGCCCCAAACCATATA 57.449 40.909 0.00 0.00 36.96 0.86
604 605 3.419732 AATCTTGGCCCCAAACCATAT 57.580 42.857 0.00 0.00 36.96 1.78
605 606 2.938428 AATCTTGGCCCCAAACCATA 57.062 45.000 0.00 0.00 36.96 2.74
606 607 2.040145 CAAAATCTTGGCCCCAAACCAT 59.960 45.455 0.00 0.00 36.96 3.55
607 608 1.419387 CAAAATCTTGGCCCCAAACCA 59.581 47.619 0.00 0.00 35.33 3.67
608 609 1.881925 GCAAAATCTTGGCCCCAAACC 60.882 52.381 0.00 0.00 35.33 3.27
609 610 1.522668 GCAAAATCTTGGCCCCAAAC 58.477 50.000 0.00 0.00 35.33 2.93
617 618 1.079888 GGGCACGGCAAAATCTTGG 60.080 57.895 0.00 0.00 32.76 3.61
618 619 1.079888 GGGGCACGGCAAAATCTTG 60.080 57.895 0.00 0.00 35.49 3.02
619 620 1.228862 AGGGGCACGGCAAAATCTT 60.229 52.632 0.00 0.00 0.00 2.40
620 621 1.678970 GAGGGGCACGGCAAAATCT 60.679 57.895 0.00 0.00 0.00 2.40
621 622 1.531739 TTGAGGGGCACGGCAAAATC 61.532 55.000 0.00 0.00 0.00 2.17
622 623 1.118356 TTTGAGGGGCACGGCAAAAT 61.118 50.000 8.09 0.00 0.00 1.82
623 624 1.330655 TTTTGAGGGGCACGGCAAAA 61.331 50.000 16.06 16.06 36.55 2.44
624 625 1.330655 TTTTTGAGGGGCACGGCAAA 61.331 50.000 6.71 6.71 0.00 3.68
625 626 1.758514 TTTTTGAGGGGCACGGCAA 60.759 52.632 0.00 0.00 0.00 4.52
626 627 2.123683 TTTTTGAGGGGCACGGCA 60.124 55.556 0.00 0.00 0.00 5.69
640 641 0.888736 GGCCAGCCCGCAAAATTTTT 60.889 50.000 0.00 0.00 0.00 1.94
641 642 1.302431 GGCCAGCCCGCAAAATTTT 60.302 52.632 0.00 0.00 0.00 1.82
642 643 2.347114 GGCCAGCCCGCAAAATTT 59.653 55.556 0.00 0.00 0.00 1.82
660 661 3.236618 GAACAGACCACGCCAACGC 62.237 63.158 0.00 0.00 45.53 4.84
662 663 2.604174 CCGAACAGACCACGCCAAC 61.604 63.158 0.00 0.00 0.00 3.77
663 664 2.280524 CCGAACAGACCACGCCAA 60.281 61.111 0.00 0.00 0.00 4.52
664 665 4.980805 GCCGAACAGACCACGCCA 62.981 66.667 0.00 0.00 0.00 5.69
668 669 2.798148 AATCCCGCCGAACAGACCAC 62.798 60.000 0.00 0.00 0.00 4.16
669 670 2.119484 AAATCCCGCCGAACAGACCA 62.119 55.000 0.00 0.00 0.00 4.02
670 671 0.958876 AAAATCCCGCCGAACAGACC 60.959 55.000 0.00 0.00 0.00 3.85
671 672 0.446616 GAAAATCCCGCCGAACAGAC 59.553 55.000 0.00 0.00 0.00 3.51
672 673 0.675522 GGAAAATCCCGCCGAACAGA 60.676 55.000 0.00 0.00 0.00 3.41
673 674 1.800681 GGAAAATCCCGCCGAACAG 59.199 57.895 0.00 0.00 0.00 3.16
674 675 3.990466 GGAAAATCCCGCCGAACA 58.010 55.556 0.00 0.00 0.00 3.18
682 683 3.872728 GTCGGCGCGGAAAATCCC 61.873 66.667 19.96 2.14 31.13 3.85
683 684 3.872728 GGTCGGCGCGGAAAATCC 61.873 66.667 19.96 12.55 0.00 3.01
684 685 3.872728 GGGTCGGCGCGGAAAATC 61.873 66.667 19.96 6.99 0.00 2.17
685 686 4.708386 TGGGTCGGCGCGGAAAAT 62.708 61.111 19.96 0.00 0.00 1.82
691 692 2.304516 CTAAAATGTGGGTCGGCGCG 62.305 60.000 0.00 0.00 0.00 6.86
692 693 1.427819 CTAAAATGTGGGTCGGCGC 59.572 57.895 0.00 0.00 0.00 6.53
693 694 1.427819 GCTAAAATGTGGGTCGGCG 59.572 57.895 0.00 0.00 0.00 6.46
694 695 1.663379 GGGCTAAAATGTGGGTCGGC 61.663 60.000 0.00 0.00 0.00 5.54
695 696 0.322997 TGGGCTAAAATGTGGGTCGG 60.323 55.000 0.00 0.00 0.00 4.79
696 697 1.762708 ATGGGCTAAAATGTGGGTCG 58.237 50.000 0.00 0.00 0.00 4.79
697 698 5.869649 AAATATGGGCTAAAATGTGGGTC 57.130 39.130 0.00 0.00 0.00 4.46
698 699 5.104569 CCAAAATATGGGCTAAAATGTGGGT 60.105 40.000 0.00 0.00 46.27 4.51
699 700 5.367302 CCAAAATATGGGCTAAAATGTGGG 58.633 41.667 0.00 0.00 46.27 4.61
713 714 4.026145 CCGCAAAATAACCGCCAAAATATG 60.026 41.667 0.00 0.00 0.00 1.78
714 715 4.116238 CCGCAAAATAACCGCCAAAATAT 58.884 39.130 0.00 0.00 0.00 1.28
715 716 3.512680 CCGCAAAATAACCGCCAAAATA 58.487 40.909 0.00 0.00 0.00 1.40
716 717 2.342179 CCGCAAAATAACCGCCAAAAT 58.658 42.857 0.00 0.00 0.00 1.82
717 718 1.605712 CCCGCAAAATAACCGCCAAAA 60.606 47.619 0.00 0.00 0.00 2.44
718 719 0.038159 CCCGCAAAATAACCGCCAAA 60.038 50.000 0.00 0.00 0.00 3.28
719 720 1.179814 ACCCGCAAAATAACCGCCAA 61.180 50.000 0.00 0.00 0.00 4.52
720 721 1.587933 GACCCGCAAAATAACCGCCA 61.588 55.000 0.00 0.00 0.00 5.69
721 722 1.138036 GACCCGCAAAATAACCGCC 59.862 57.895 0.00 0.00 0.00 6.13
722 723 1.226184 CGACCCGCAAAATAACCGC 60.226 57.895 0.00 0.00 0.00 5.68
723 724 1.020333 TCCGACCCGCAAAATAACCG 61.020 55.000 0.00 0.00 0.00 4.44
724 725 0.730840 CTCCGACCCGCAAAATAACC 59.269 55.000 0.00 0.00 0.00 2.85
725 726 1.395954 GACTCCGACCCGCAAAATAAC 59.604 52.381 0.00 0.00 0.00 1.89
726 727 1.276989 AGACTCCGACCCGCAAAATAA 59.723 47.619 0.00 0.00 0.00 1.40
727 728 0.899720 AGACTCCGACCCGCAAAATA 59.100 50.000 0.00 0.00 0.00 1.40
728 729 0.036306 AAGACTCCGACCCGCAAAAT 59.964 50.000 0.00 0.00 0.00 1.82
729 730 0.179040 AAAGACTCCGACCCGCAAAA 60.179 50.000 0.00 0.00 0.00 2.44
730 731 0.179040 AAAAGACTCCGACCCGCAAA 60.179 50.000 0.00 0.00 0.00 3.68
731 732 0.882927 CAAAAGACTCCGACCCGCAA 60.883 55.000 0.00 0.00 0.00 4.85
732 733 1.301401 CAAAAGACTCCGACCCGCA 60.301 57.895 0.00 0.00 0.00 5.69
733 734 2.677979 GCAAAAGACTCCGACCCGC 61.678 63.158 0.00 0.00 0.00 6.13
734 735 1.291877 CTGCAAAAGACTCCGACCCG 61.292 60.000 0.00 0.00 0.00 5.28
735 736 0.955919 CCTGCAAAAGACTCCGACCC 60.956 60.000 0.00 0.00 0.00 4.46
736 737 0.955919 CCCTGCAAAAGACTCCGACC 60.956 60.000 0.00 0.00 0.00 4.79
737 738 0.250338 ACCCTGCAAAAGACTCCGAC 60.250 55.000 0.00 0.00 0.00 4.79
738 739 0.034896 GACCCTGCAAAAGACTCCGA 59.965 55.000 0.00 0.00 0.00 4.55
739 740 0.035458 AGACCCTGCAAAAGACTCCG 59.965 55.000 0.00 0.00 0.00 4.63
740 741 1.528129 CAGACCCTGCAAAAGACTCC 58.472 55.000 0.00 0.00 0.00 3.85
750 751 6.661647 TAAGAGCAACTTAGCAGACCCTGC 62.662 50.000 10.69 10.69 46.37 4.85
751 752 1.277557 AGAGCAACTTAGCAGACCCTG 59.722 52.381 0.00 0.00 36.85 4.45
752 753 1.650528 AGAGCAACTTAGCAGACCCT 58.349 50.000 0.00 0.00 36.85 4.34
753 754 2.481289 AAGAGCAACTTAGCAGACCC 57.519 50.000 0.00 0.00 37.03 4.46
754 755 3.873952 CCATAAGAGCAACTTAGCAGACC 59.126 47.826 8.78 0.00 43.16 3.85
755 756 3.311048 GCCATAAGAGCAACTTAGCAGAC 59.689 47.826 8.78 0.00 43.16 3.51
756 757 3.055167 TGCCATAAGAGCAACTTAGCAGA 60.055 43.478 10.91 0.00 43.16 4.26
757 758 3.273434 TGCCATAAGAGCAACTTAGCAG 58.727 45.455 10.91 4.51 43.16 4.24
758 759 3.273434 CTGCCATAAGAGCAACTTAGCA 58.727 45.455 12.92 12.92 43.16 3.49
759 760 2.615912 CCTGCCATAAGAGCAACTTAGC 59.384 50.000 8.78 8.07 43.16 3.09
760 761 4.142609 TCCTGCCATAAGAGCAACTTAG 57.857 45.455 8.78 0.00 43.16 2.18
761 762 4.778213 ATCCTGCCATAAGAGCAACTTA 57.222 40.909 5.99 5.99 43.89 2.24
762 763 3.659183 ATCCTGCCATAAGAGCAACTT 57.341 42.857 2.10 2.10 40.35 2.66
763 764 4.989875 ATATCCTGCCATAAGAGCAACT 57.010 40.909 0.00 0.00 40.35 3.16
764 765 4.633565 GCTATATCCTGCCATAAGAGCAAC 59.366 45.833 0.00 0.00 40.35 4.17
765 766 4.533707 AGCTATATCCTGCCATAAGAGCAA 59.466 41.667 0.00 0.00 40.35 3.91
766 767 4.081254 CAGCTATATCCTGCCATAAGAGCA 60.081 45.833 0.00 0.00 38.82 4.26
767 768 4.081198 ACAGCTATATCCTGCCATAAGAGC 60.081 45.833 0.00 0.00 33.65 4.09
768 769 5.659463 GACAGCTATATCCTGCCATAAGAG 58.341 45.833 0.00 0.00 33.65 2.85
769 770 4.158579 CGACAGCTATATCCTGCCATAAGA 59.841 45.833 0.00 0.00 33.65 2.10
770 771 4.428209 CGACAGCTATATCCTGCCATAAG 58.572 47.826 0.00 0.00 33.65 1.73
771 772 3.368427 GCGACAGCTATATCCTGCCATAA 60.368 47.826 0.00 0.00 41.01 1.90
772 773 2.166459 GCGACAGCTATATCCTGCCATA 59.834 50.000 0.00 0.00 41.01 2.74
773 774 1.066573 GCGACAGCTATATCCTGCCAT 60.067 52.381 0.00 0.00 41.01 4.40
774 775 0.318441 GCGACAGCTATATCCTGCCA 59.682 55.000 0.00 0.00 41.01 4.92
775 776 0.734253 CGCGACAGCTATATCCTGCC 60.734 60.000 0.00 0.00 42.32 4.85
776 777 1.347817 GCGCGACAGCTATATCCTGC 61.348 60.000 12.10 0.00 42.32 4.85
777 778 1.067743 CGCGCGACAGCTATATCCTG 61.068 60.000 28.94 2.63 42.32 3.86
778 779 1.210413 CGCGCGACAGCTATATCCT 59.790 57.895 28.94 0.00 42.32 3.24
779 780 0.663568 AACGCGCGACAGCTATATCC 60.664 55.000 39.36 0.00 42.32 2.59
780 781 1.122680 GAAACGCGCGACAGCTATATC 59.877 52.381 39.36 15.38 42.32 1.63
781 782 1.129326 GAAACGCGCGACAGCTATAT 58.871 50.000 39.36 7.53 42.32 0.86
782 783 0.868602 GGAAACGCGCGACAGCTATA 60.869 55.000 39.36 0.00 42.32 1.31
783 784 2.165301 GGAAACGCGCGACAGCTAT 61.165 57.895 39.36 9.38 42.32 2.97
784 785 2.807895 GGAAACGCGCGACAGCTA 60.808 61.111 39.36 0.00 42.32 3.32
813 814 4.841861 TATTTGGCGACCGGGGCG 62.842 66.667 20.30 20.30 34.76 6.13
814 815 2.879813 TTCTATTTGGCGACCGGGGC 62.880 60.000 6.32 9.11 0.00 5.80
815 816 1.093496 GTTCTATTTGGCGACCGGGG 61.093 60.000 6.32 0.00 0.00 5.73
816 817 1.093496 GGTTCTATTTGGCGACCGGG 61.093 60.000 6.32 0.00 0.00 5.73
817 818 0.107848 AGGTTCTATTTGGCGACCGG 60.108 55.000 0.00 0.00 35.56 5.28
818 819 1.287425 GAGGTTCTATTTGGCGACCG 58.713 55.000 0.00 0.00 35.56 4.79
819 820 1.664873 GGAGGTTCTATTTGGCGACC 58.335 55.000 0.00 0.00 0.00 4.79
820 821 1.209747 AGGGAGGTTCTATTTGGCGAC 59.790 52.381 0.00 0.00 0.00 5.19
821 822 1.485066 GAGGGAGGTTCTATTTGGCGA 59.515 52.381 0.00 0.00 0.00 5.54
826 827 1.486726 CCGCTGAGGGAGGTTCTATTT 59.513 52.381 0.00 0.00 35.97 1.40
829 830 2.058595 GCCGCTGAGGGAGGTTCTA 61.059 63.158 0.00 0.00 41.48 2.10
904 905 1.549243 TTGTATCCTGTGGCCGCTGA 61.549 55.000 23.41 16.84 0.00 4.26
919 920 5.110598 TGCTATATTCGTTTCGGCTTTGTA 58.889 37.500 0.00 0.00 0.00 2.41
947 948 7.013369 GTCAAGGTTTTTGAGTCTTATCCTGTT 59.987 37.037 0.00 0.00 0.00 3.16
948 949 6.486993 GTCAAGGTTTTTGAGTCTTATCCTGT 59.513 38.462 0.00 0.00 0.00 4.00
959 960 2.599848 CGCAGTCGTCAAGGTTTTTGAG 60.600 50.000 0.00 0.00 0.00 3.02
1048 1050 1.814634 GCAGGAAGGAGCTGGATGATG 60.815 57.143 0.00 0.00 0.00 3.07
1049 1051 0.473326 GCAGGAAGGAGCTGGATGAT 59.527 55.000 0.00 0.00 0.00 2.45
1050 1052 0.911045 TGCAGGAAGGAGCTGGATGA 60.911 55.000 0.00 0.00 0.00 2.92
1132 1149 2.762043 GAGGCTCCTCCCGCTCTT 60.762 66.667 2.15 0.00 37.11 2.85
1267 1284 2.167693 AGAGCAAATAACCGACCGATCA 59.832 45.455 0.00 0.00 0.00 2.92
1268 1285 2.540101 CAGAGCAAATAACCGACCGATC 59.460 50.000 0.00 0.00 0.00 3.69
1269 1286 2.550978 CAGAGCAAATAACCGACCGAT 58.449 47.619 0.00 0.00 0.00 4.18
1270 1287 2.004583 CAGAGCAAATAACCGACCGA 57.995 50.000 0.00 0.00 0.00 4.69
1273 1290 3.831715 AAAGCAGAGCAAATAACCGAC 57.168 42.857 0.00 0.00 0.00 4.79
1279 1296 5.163364 TGGAAACCAAAAAGCAGAGCAAATA 60.163 36.000 0.00 0.00 0.00 1.40
1473 1492 0.179084 TCAACGAATGAGGGATCGCC 60.179 55.000 6.09 0.00 42.61 5.54
1480 1499 2.196749 CACCGAGATCAACGAATGAGG 58.803 52.381 12.59 0.00 42.53 3.86
1484 1503 1.066858 ACAGCACCGAGATCAACGAAT 60.067 47.619 12.59 0.15 0.00 3.34
1488 1507 2.860735 GTGATACAGCACCGAGATCAAC 59.139 50.000 0.00 0.00 32.68 3.18
1502 1521 2.183300 GCGCTGGTCGGTGATACA 59.817 61.111 0.00 0.00 38.94 2.29
1519 1538 2.015382 GCAGTAGCAGCAGCATCAG 58.985 57.895 3.17 0.00 45.49 2.90
1569 1591 4.680237 CAAGTCCCGCACTCGCCA 62.680 66.667 0.00 0.00 32.30 5.69
1610 1632 9.236006 ACTTGAGATTTGCACATTATAACTCTT 57.764 29.630 0.00 0.00 0.00 2.85
1618 1640 4.082625 CCAGCACTTGAGATTTGCACATTA 60.083 41.667 0.00 0.00 38.81 1.90
1619 1641 3.305813 CCAGCACTTGAGATTTGCACATT 60.306 43.478 0.00 0.00 38.81 2.71
1620 1642 2.230508 CCAGCACTTGAGATTTGCACAT 59.769 45.455 0.00 0.00 38.81 3.21
1623 1645 2.275134 TCCAGCACTTGAGATTTGCA 57.725 45.000 0.00 0.00 38.81 4.08
1624 1646 4.918037 CTTATCCAGCACTTGAGATTTGC 58.082 43.478 0.00 0.00 36.45 3.68
1702 1724 7.343057 GGGAATGGATATTTTGAGAGTTTTCCT 59.657 37.037 0.00 0.00 0.00 3.36
1755 1777 2.212900 AAAGCATTTCGCCGCCTTCC 62.213 55.000 0.00 0.00 44.04 3.46
1831 1872 6.889595 AAACACATTTGATATTTGGGGGAT 57.110 33.333 0.00 0.00 0.00 3.85
1858 1899 9.352191 AGTTACTACTACTGTCTCTCTTTTTCA 57.648 33.333 0.00 0.00 31.21 2.69
1872 1913 9.389755 GGCACTAAGTTACTAGTTACTACTACT 57.610 37.037 14.53 2.14 35.78 2.57
1874 1915 9.739276 TTGGCACTAAGTTACTAGTTACTACTA 57.261 33.333 14.53 4.46 35.78 1.82
1875 1916 8.641498 TTGGCACTAAGTTACTAGTTACTACT 57.359 34.615 14.53 3.51 38.44 2.57
1876 1917 9.133627 GTTTGGCACTAAGTTACTAGTTACTAC 57.866 37.037 14.53 3.05 29.36 2.73
1877 1918 9.082313 AGTTTGGCACTAAGTTACTAGTTACTA 57.918 33.333 14.53 3.67 31.97 1.82
1878 1919 7.960262 AGTTTGGCACTAAGTTACTAGTTACT 58.040 34.615 8.71 8.71 31.97 2.24
1879 1920 8.087136 AGAGTTTGGCACTAAGTTACTAGTTAC 58.913 37.037 0.00 1.34 35.01 2.50
1880 1921 8.086522 CAGAGTTTGGCACTAAGTTACTAGTTA 58.913 37.037 0.00 0.00 35.01 2.24
1881 1922 6.929606 CAGAGTTTGGCACTAAGTTACTAGTT 59.070 38.462 0.00 0.00 35.01 2.24
1883 1924 6.688578 TCAGAGTTTGGCACTAAGTTACTAG 58.311 40.000 0.00 0.00 35.01 2.57
1885 1926 5.546621 TCAGAGTTTGGCACTAAGTTACT 57.453 39.130 0.00 0.00 35.01 2.24
1893 1934 1.670811 CAACGTTCAGAGTTTGGCACT 59.329 47.619 0.00 0.00 39.07 4.40
1898 1939 4.273480 AGATCAACCAACGTTCAGAGTTTG 59.727 41.667 0.00 0.00 0.00 2.93
1910 1952 3.888930 TGGGTTTCTGAAGATCAACCAAC 59.111 43.478 13.40 0.63 36.91 3.77
1911 1953 4.177537 TGGGTTTCTGAAGATCAACCAA 57.822 40.909 13.40 2.60 36.91 3.67
1912 1954 3.874383 TGGGTTTCTGAAGATCAACCA 57.126 42.857 13.40 2.12 36.91 3.67
1913 1955 4.145052 ACTTGGGTTTCTGAAGATCAACC 58.855 43.478 5.64 5.64 35.31 3.77
2077 2186 3.411446 TGACCATCTGCGAAGAACAAAT 58.589 40.909 0.00 0.00 0.00 2.32
2086 2195 0.823460 TGCTGTATGACCATCTGCGA 59.177 50.000 0.00 0.00 0.00 5.10
2180 2289 3.572632 ATTCCAGGGTCATGACTCATG 57.427 47.619 27.18 21.23 42.60 3.07
2181 2290 5.919348 ATTATTCCAGGGTCATGACTCAT 57.081 39.130 27.18 14.15 33.19 2.90
2182 2291 5.715439 AATTATTCCAGGGTCATGACTCA 57.285 39.130 27.18 7.23 33.19 3.41
2183 2292 6.931840 GTCTAATTATTCCAGGGTCATGACTC 59.068 42.308 24.50 21.73 0.00 3.36
2184 2293 6.386927 TGTCTAATTATTCCAGGGTCATGACT 59.613 38.462 24.50 3.64 0.00 3.41
2185 2294 6.591935 TGTCTAATTATTCCAGGGTCATGAC 58.408 40.000 17.91 17.91 0.00 3.06
2186 2295 6.183361 CCTGTCTAATTATTCCAGGGTCATGA 60.183 42.308 13.56 0.00 39.20 3.07
2200 2316 4.331968 CAAGTGTTGCCCCTGTCTAATTA 58.668 43.478 0.00 0.00 0.00 1.40
2212 2329 1.967319 TCTCTTGACCAAGTGTTGCC 58.033 50.000 9.31 0.00 39.38 4.52
2285 2402 1.394917 CGCCTTAACATGTCTCTGTGC 59.605 52.381 0.00 0.00 0.00 4.57
2377 2501 7.231317 ACCGATTGTTATATTTGAGCATTGGAT 59.769 33.333 0.00 0.00 0.00 3.41
2414 2540 3.511934 ACAATAGGTGATCGCCTAGGATC 59.488 47.826 32.60 8.30 43.60 3.36
2494 2620 2.736144 TTTGTGGAGTGTAGTAGCGG 57.264 50.000 0.00 0.00 0.00 5.52
2498 2624 6.238293 CGACGAGATATTTGTGGAGTGTAGTA 60.238 42.308 0.00 0.00 0.00 1.82
2507 2633 4.028852 TGACTCGACGAGATATTTGTGG 57.971 45.455 30.56 1.76 33.32 4.17
2550 2676 7.004086 AGTTGTGAAAATCAGGGAATAGTTGA 58.996 34.615 0.00 0.00 0.00 3.18
2587 2713 5.567430 TGAGGTAGTATGTGTGTAGTGTCT 58.433 41.667 0.00 0.00 0.00 3.41
2588 2714 5.892160 TGAGGTAGTATGTGTGTAGTGTC 57.108 43.478 0.00 0.00 0.00 3.67
2630 2756 2.039405 AATCCTGGATCCGCCCCT 60.039 61.111 10.14 0.00 34.97 4.79
2633 2759 1.599240 GCTCAATCCTGGATCCGCC 60.599 63.158 10.14 0.00 37.10 6.13
2634 2760 1.599240 GGCTCAATCCTGGATCCGC 60.599 63.158 10.14 12.13 0.00 5.54
2635 2761 0.034616 GAGGCTCAATCCTGGATCCG 59.965 60.000 10.14 4.72 36.38 4.18
2636 2762 0.034616 CGAGGCTCAATCCTGGATCC 59.965 60.000 15.95 4.20 36.38 3.36
2637 2763 0.602372 GCGAGGCTCAATCCTGGATC 60.602 60.000 15.95 0.00 36.38 3.36
2638 2764 1.449353 GCGAGGCTCAATCCTGGAT 59.551 57.895 15.95 2.57 36.38 3.41
2639 2765 2.735772 GGCGAGGCTCAATCCTGGA 61.736 63.158 15.95 0.00 36.38 3.86
2640 2766 2.203126 GGCGAGGCTCAATCCTGG 60.203 66.667 15.95 0.00 36.38 4.45
2641 2767 2.203126 GGGCGAGGCTCAATCCTG 60.203 66.667 15.95 0.00 36.38 3.86
2642 2768 3.483869 GGGGCGAGGCTCAATCCT 61.484 66.667 15.95 0.00 39.67 3.24
2643 2769 4.918201 CGGGGCGAGGCTCAATCC 62.918 72.222 15.95 11.67 0.00 3.01
2644 2770 4.918201 CCGGGGCGAGGCTCAATC 62.918 72.222 15.95 2.59 0.00 2.67
2659 2785 4.424711 TAGCAAGCTTGGGGCCCG 62.425 66.667 27.10 5.43 43.05 6.13
2660 2786 2.755876 GTAGCAAGCTTGGGGCCC 60.756 66.667 27.10 18.17 43.05 5.80
2661 2787 2.035626 TGTAGCAAGCTTGGGGCC 59.964 61.111 27.10 10.90 43.05 5.80
2662 2788 1.303643 ACTGTAGCAAGCTTGGGGC 60.304 57.895 27.10 13.65 42.19 5.80
2663 2789 0.250901 ACACTGTAGCAAGCTTGGGG 60.251 55.000 27.10 13.86 0.00 4.96
2664 2790 1.160137 GACACTGTAGCAAGCTTGGG 58.840 55.000 27.10 4.15 0.00 4.12
2665 2791 1.802960 CTGACACTGTAGCAAGCTTGG 59.197 52.381 27.10 12.81 0.00 3.61
2666 2792 1.196354 GCTGACACTGTAGCAAGCTTG 59.804 52.381 22.44 22.44 39.67 4.01
2667 2793 1.202687 TGCTGACACTGTAGCAAGCTT 60.203 47.619 0.00 0.00 46.06 3.74
2668 2794 0.394192 TGCTGACACTGTAGCAAGCT 59.606 50.000 1.42 0.00 46.06 3.74
2669 2795 2.918571 TGCTGACACTGTAGCAAGC 58.081 52.632 1.42 0.08 46.06 4.01
2685 2811 5.263185 CGTTGGTACTATTTAGCATTGTGC 58.737 41.667 0.00 0.00 45.46 4.57
2686 2812 5.353123 ACCGTTGGTACTATTTAGCATTGTG 59.647 40.000 0.00 0.00 32.11 3.33
2687 2813 5.353123 CACCGTTGGTACTATTTAGCATTGT 59.647 40.000 0.00 0.00 32.11 2.71
2688 2814 5.729454 GCACCGTTGGTACTATTTAGCATTG 60.729 44.000 0.00 0.00 32.11 2.82
2689 2815 4.334481 GCACCGTTGGTACTATTTAGCATT 59.666 41.667 0.00 0.00 32.11 3.56
2690 2816 3.875134 GCACCGTTGGTACTATTTAGCAT 59.125 43.478 0.00 0.00 32.11 3.79
2691 2817 3.055675 AGCACCGTTGGTACTATTTAGCA 60.056 43.478 0.00 0.00 32.11 3.49
2692 2818 3.528532 AGCACCGTTGGTACTATTTAGC 58.471 45.455 0.00 0.00 32.11 3.09
2701 2827 4.888823 TCATATACTGTAGCACCGTTGGTA 59.111 41.667 0.00 0.00 32.11 3.25
2702 2828 3.702548 TCATATACTGTAGCACCGTTGGT 59.297 43.478 0.00 0.00 35.62 3.67
2703 2829 4.316205 TCATATACTGTAGCACCGTTGG 57.684 45.455 0.00 0.00 0.00 3.77
2704 2830 4.745125 CCTTCATATACTGTAGCACCGTTG 59.255 45.833 0.00 0.00 0.00 4.10
2705 2831 4.647853 TCCTTCATATACTGTAGCACCGTT 59.352 41.667 0.00 0.00 0.00 4.44
2706 2832 4.212716 TCCTTCATATACTGTAGCACCGT 58.787 43.478 0.00 0.00 0.00 4.83
2707 2833 4.848562 TCCTTCATATACTGTAGCACCG 57.151 45.455 0.00 0.00 0.00 4.94
2708 2834 5.986135 CAGTTCCTTCATATACTGTAGCACC 59.014 44.000 0.00 0.00 34.68 5.01
2709 2835 5.463724 GCAGTTCCTTCATATACTGTAGCAC 59.536 44.000 0.00 0.00 40.02 4.40
2710 2836 5.363868 AGCAGTTCCTTCATATACTGTAGCA 59.636 40.000 0.00 0.00 40.02 3.49
2711 2837 5.848406 AGCAGTTCCTTCATATACTGTAGC 58.152 41.667 0.00 0.00 40.02 3.58
2712 2838 6.451393 GGAGCAGTTCCTTCATATACTGTAG 58.549 44.000 0.00 0.00 43.16 2.74
2713 2839 6.406692 GGAGCAGTTCCTTCATATACTGTA 57.593 41.667 0.00 0.00 43.16 2.74
2714 2840 5.283457 GGAGCAGTTCCTTCATATACTGT 57.717 43.478 0.00 0.00 43.16 3.55
2727 2853 1.452833 GGGGCATGAGGAGCAGTTC 60.453 63.158 0.00 0.00 0.00 3.01
2728 2854 2.679716 GGGGCATGAGGAGCAGTT 59.320 61.111 0.00 0.00 0.00 3.16
2729 2855 3.790437 CGGGGCATGAGGAGCAGT 61.790 66.667 0.00 0.00 0.00 4.40
2730 2856 4.559063 CCGGGGCATGAGGAGCAG 62.559 72.222 0.00 0.00 0.00 4.24
2760 2886 3.866582 GATCCAGGACCCAGGCCG 61.867 72.222 0.00 0.00 0.00 6.13
2761 2887 3.493303 GGATCCAGGACCCAGGCC 61.493 72.222 6.95 0.00 0.00 5.19
2762 2888 3.866582 CGGATCCAGGACCCAGGC 61.867 72.222 13.41 0.00 0.00 4.85
2763 2889 3.866582 GCGGATCCAGGACCCAGG 61.867 72.222 13.41 0.00 0.00 4.45
2764 2890 3.866582 GGCGGATCCAGGACCCAG 61.867 72.222 13.41 0.00 34.01 4.45
2765 2891 4.731853 TGGCGGATCCAGGACCCA 62.732 66.667 13.41 6.76 40.72 4.51
2772 2898 3.399181 GGACCAGTGGCGGATCCA 61.399 66.667 13.41 0.00 44.18 3.41
2773 2899 2.666596 GATGGACCAGTGGCGGATCC 62.667 65.000 9.78 9.43 0.00 3.36
2774 2900 1.227674 GATGGACCAGTGGCGGATC 60.228 63.158 9.78 4.10 0.00 3.36
2775 2901 2.911143 GATGGACCAGTGGCGGAT 59.089 61.111 9.78 0.00 0.00 4.18
2776 2902 3.770040 CGATGGACCAGTGGCGGA 61.770 66.667 9.78 0.00 0.00 5.54
2777 2903 3.605749 AACGATGGACCAGTGGCGG 62.606 63.158 9.78 0.00 0.00 6.13
2778 2904 2.047274 AACGATGGACCAGTGGCG 60.047 61.111 9.78 6.84 0.00 5.69
2779 2905 3.578456 CAACGATGGACCAGTGGC 58.422 61.111 9.78 1.63 0.00 5.01
2789 2915 0.796312 CGGAACAACCTCCAACGATG 59.204 55.000 0.00 0.00 34.91 3.84
2790 2916 0.321298 CCGGAACAACCTCCAACGAT 60.321 55.000 0.00 0.00 34.91 3.73
2791 2917 1.070105 CCGGAACAACCTCCAACGA 59.930 57.895 0.00 0.00 34.91 3.85
2792 2918 1.070105 TCCGGAACAACCTCCAACG 59.930 57.895 0.00 0.00 34.91 4.10
2793 2919 0.179040 TGTCCGGAACAACCTCCAAC 60.179 55.000 5.23 0.00 34.91 3.77
2794 2920 0.768622 ATGTCCGGAACAACCTCCAA 59.231 50.000 5.23 0.00 42.37 3.53
2795 2921 0.768622 AATGTCCGGAACAACCTCCA 59.231 50.000 5.23 0.00 42.37 3.86
2796 2922 1.165270 CAATGTCCGGAACAACCTCC 58.835 55.000 5.23 0.00 42.37 4.30
2797 2923 1.804748 GACAATGTCCGGAACAACCTC 59.195 52.381 5.23 0.00 42.37 3.85
2807 2933 4.797471 ACAATCATGTTTGACAATGTCCG 58.203 39.130 20.66 0.00 35.91 4.79
2812 2938 7.396907 TCAGGGAATACAATCATGTTTGACAAT 59.603 33.333 20.66 9.65 41.05 2.71
2816 2942 7.614974 TCAATCAGGGAATACAATCATGTTTGA 59.385 33.333 20.66 7.16 41.05 2.69
2861 2987 3.280775 GACGTTGACTCTTTCTTTTGCG 58.719 45.455 0.00 0.00 0.00 4.85
2868 2994 2.095718 GCCAATGGACGTTGACTCTTTC 60.096 50.000 2.05 0.00 0.00 2.62
2885 3012 6.157904 CAGATAATTGTGAACATTGTGCCAA 58.842 36.000 0.00 0.00 0.00 4.52
2895 3022 5.851177 CCACGTCAAACAGATAATTGTGAAC 59.149 40.000 0.00 0.00 0.00 3.18
2901 3028 6.035650 CGTATCACCACGTCAAACAGATAATT 59.964 38.462 0.00 0.00 37.16 1.40
2903 3030 4.860352 CGTATCACCACGTCAAACAGATAA 59.140 41.667 0.00 0.00 37.16 1.75
2917 3044 1.001887 GGTTTGGCCCGTATCACCA 60.002 57.895 0.00 0.00 0.00 4.17
2925 3052 2.254737 TACCCATACGGTTTGGCCCG 62.255 60.000 11.62 0.00 45.36 6.13
2929 3056 0.464916 GGGCTACCCATACGGTTTGG 60.465 60.000 10.29 10.29 45.36 3.28
2936 3063 1.968493 TGAAGATCGGGCTACCCATAC 59.032 52.381 3.08 0.00 45.83 2.39
2948 3075 2.157668 CACCTTCGGTTTGTGAAGATCG 59.842 50.000 4.39 0.00 44.42 3.69
2962 3089 2.620251 TATCCTGGAATGCACCTTCG 57.380 50.000 0.00 0.00 0.00 3.79
2975 3102 5.587388 ACAATTGCTCCATGTTTATCCTG 57.413 39.130 5.05 0.00 0.00 3.86
2981 3108 6.183360 TGTTTCCTTACAATTGCTCCATGTTT 60.183 34.615 5.05 0.00 0.00 2.83
2991 3118 4.440758 CGCACTTGTGTTTCCTTACAATTG 59.559 41.667 3.24 3.24 39.21 2.32
2995 3122 2.634600 ACGCACTTGTGTTTCCTTACA 58.365 42.857 2.61 0.00 34.75 2.41
3011 3139 0.394938 TTGTCTTTGAGGGCTACGCA 59.605 50.000 0.00 0.00 0.00 5.24
3019 3147 5.130292 AGATGTGCAATTTGTCTTTGAGG 57.870 39.130 0.00 0.00 0.00 3.86
3032 3160 8.791675 TGTGTTATGAAAGATTTAGATGTGCAA 58.208 29.630 0.00 0.00 0.00 4.08
3034 3162 9.229784 CATGTGTTATGAAAGATTTAGATGTGC 57.770 33.333 0.00 0.00 0.00 4.57
3048 3176 8.100164 TCCTCTTGTATTGACATGTGTTATGAA 58.900 33.333 1.15 0.00 34.86 2.57
3049 3177 7.619965 TCCTCTTGTATTGACATGTGTTATGA 58.380 34.615 1.15 0.00 34.86 2.15
3059 3187 7.297936 TCTAACTGTTCCTCTTGTATTGACA 57.702 36.000 0.00 0.00 0.00 3.58
3084 3212 8.024285 TGTCTTATTTCTTTGTTCGTTGTTTGT 58.976 29.630 0.00 0.00 0.00 2.83
3093 3221 7.973944 ACACCTTGTTGTCTTATTTCTTTGTTC 59.026 33.333 0.00 0.00 0.00 3.18
3115 3244 4.770010 TGAATTTGGGGATGAACTAACACC 59.230 41.667 0.00 0.00 0.00 4.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.