Multiple sequence alignment - TraesCS7B01G005100

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BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G005100 chr7B 100.000 7558 0 0 1 7558 2896670 2889113 0.000000e+00 13958.0
1 TraesCS7B01G005100 chr7B 99.412 1191 5 2 2517 3707 2891394 2892582 0.000000e+00 2159.0
2 TraesCS7B01G005100 chr7B 99.412 1191 5 2 4089 5277 2892964 2894154 0.000000e+00 2159.0
3 TraesCS7B01G005100 chr7B 96.441 281 8 2 6069 6349 493173709 493173431 5.340000e-126 462.0
4 TraesCS7B01G005100 chr7B 96.226 212 7 1 7348 7558 725329614 725329825 5.610000e-91 346.0
5 TraesCS7B01G005100 chr7B 96.250 160 2 4 3796 3954 529726186 529726342 7.520000e-65 259.0
6 TraesCS7B01G005100 chr7B 94.915 59 3 0 4512 4570 747166224 747166166 8.070000e-15 93.5
7 TraesCS7B01G005100 chr7B 94.915 59 3 0 3226 3284 747166166 747166224 8.070000e-15 93.5
8 TraesCS7B01G005100 chr7A 92.283 2527 132 27 1 2498 64626258 64623766 0.000000e+00 3528.0
9 TraesCS7B01G005100 chr7A 91.566 1494 105 7 6069 7558 579791211 579789735 0.000000e+00 2041.0
10 TraesCS7B01G005100 chr7A 93.646 362 16 4 4349 4706 64622061 64621703 1.120000e-147 534.0
11 TraesCS7B01G005100 chr7A 90.887 406 21 6 3956 4348 64623786 64623384 1.440000e-146 531.0
12 TraesCS7B01G005100 chr7A 93.370 362 17 4 3090 3447 64621703 64622061 5.190000e-146 529.0
13 TraesCS7B01G005100 chr7A 92.683 328 15 4 4711 5038 64620740 64620422 1.490000e-126 464.0
14 TraesCS7B01G005100 chr7A 92.097 329 16 4 2757 3085 64620422 64620740 8.940000e-124 455.0
15 TraesCS7B01G005100 chr7A 92.692 260 17 2 3448 3707 64623384 64623641 2.580000e-99 374.0
16 TraesCS7B01G005100 chr7A 96.970 165 4 1 3796 3960 8597043 8597206 7.470000e-70 276.0
17 TraesCS7B01G005100 chr7D 92.665 2086 126 17 417 2498 60303509 60301447 0.000000e+00 2979.0
18 TraesCS7B01G005100 chr7D 91.786 767 44 5 3953 4710 60301470 60300714 0.000000e+00 1050.0
19 TraesCS7B01G005100 chr7D 92.904 606 39 2 5029 5631 478117545 478118149 0.000000e+00 878.0
20 TraesCS7B01G005100 chr7D 91.667 624 40 3 3086 3707 60300714 60301327 0.000000e+00 854.0
21 TraesCS7B01G005100 chr7D 87.433 748 79 12 5029 5770 427089856 427090594 0.000000e+00 846.0
22 TraesCS7B01G005100 chr7D 95.413 436 19 1 5635 6070 546495786 546495352 0.000000e+00 693.0
23 TraesCS7B01G005100 chr7D 94.694 245 13 0 2522 2766 478117789 478117545 1.540000e-101 381.0
24 TraesCS7B01G005100 chr7D 93.392 227 15 0 4713 4939 60300222 60299996 3.380000e-88 337.0
25 TraesCS7B01G005100 chr7D 93.392 227 15 0 2857 3083 60299996 60300222 3.380000e-88 337.0
26 TraesCS7B01G005100 chr7D 87.600 250 22 2 1 242 60328211 60327963 1.610000e-71 281.0
27 TraesCS7B01G005100 chr7D 87.234 188 17 5 239 420 60326451 60326265 2.760000e-49 207.0
28 TraesCS7B01G005100 chr7D 98.333 60 1 0 4972 5031 60299760 60299701 1.040000e-18 106.0
29 TraesCS7B01G005100 chr7D 96.667 60 2 0 2764 2823 60299701 60299760 4.830000e-17 100.0
30 TraesCS7B01G005100 chr3B 94.709 1493 77 2 6068 7558 118814002 118815494 0.000000e+00 2318.0
31 TraesCS7B01G005100 chr3B 98.734 158 1 1 3796 3953 614193961 614194117 5.770000e-71 279.0
32 TraesCS7B01G005100 chr3B 97.802 91 1 1 3705 3795 707929206 707929117 1.020000e-33 156.0
33 TraesCS7B01G005100 chr3B 82.550 149 24 1 4203 4351 629587891 629587745 6.150000e-26 130.0
34 TraesCS7B01G005100 chr3B 82.550 149 24 1 3445 3593 629587745 629587891 6.150000e-26 130.0
35 TraesCS7B01G005100 chr3B 93.750 64 4 0 4514 4577 124540758 124540695 6.240000e-16 97.1
36 TraesCS7B01G005100 chr3B 93.750 64 4 0 3219 3282 124540695 124540758 6.240000e-16 97.1
37 TraesCS7B01G005100 chr3B 92.188 64 5 0 4514 4577 124481574 124481511 2.900000e-14 91.6
38 TraesCS7B01G005100 chr3B 92.188 64 5 0 3219 3282 124481511 124481574 2.900000e-14 91.6
39 TraesCS7B01G005100 chrUn 94.236 1492 84 2 6069 7558 3173425 3174916 0.000000e+00 2278.0
40 TraesCS7B01G005100 chrUn 90.079 252 24 1 2523 2773 74187395 74187144 7.310000e-85 326.0
41 TraesCS7B01G005100 chrUn 89.388 245 25 1 2522 2766 106911910 106911667 2.650000e-79 307.0
42 TraesCS7B01G005100 chrUn 87.755 245 28 2 2523 2766 105139540 105139783 1.240000e-72 285.0
43 TraesCS7B01G005100 chrUn 86.531 245 31 2 2523 2766 104963102 104962859 1.250000e-67 268.0
44 TraesCS7B01G005100 chrUn 85.656 244 34 1 2523 2766 311216900 311216658 9.730000e-64 255.0
45 TraesCS7B01G005100 chrUn 86.134 238 30 3 2531 2766 25937386 25937150 3.500000e-63 254.0
46 TraesCS7B01G005100 chrUn 85.306 245 34 2 2523 2767 288091186 288091428 1.260000e-62 252.0
47 TraesCS7B01G005100 chrUn 85.306 245 34 2 2523 2767 310616747 310616989 1.260000e-62 252.0
48 TraesCS7B01G005100 chrUn 85.356 239 30 5 2532 2768 42470544 42470779 7.580000e-60 243.0
49 TraesCS7B01G005100 chrUn 84.615 247 32 6 2525 2768 106811420 106811663 2.730000e-59 241.0
50 TraesCS7B01G005100 chrUn 81.507 146 22 4 3445 3588 86671335 86671477 1.720000e-21 115.0
51 TraesCS7B01G005100 chrUn 78.523 149 22 8 3445 3588 79469178 79469035 1.040000e-13 89.8
52 TraesCS7B01G005100 chrUn 87.302 63 8 0 3531 3593 134378624 134378686 1.050000e-08 73.1
53 TraesCS7B01G005100 chrUn 93.333 45 3 0 3544 3588 52406688 52406732 4.890000e-07 67.6
54 TraesCS7B01G005100 chrUn 93.333 45 3 0 3544 3588 342027327 342027283 4.890000e-07 67.6
55 TraesCS7B01G005100 chrUn 93.333 45 3 0 3544 3588 400549133 400549177 4.890000e-07 67.6
56 TraesCS7B01G005100 chrUn 93.333 45 3 0 3544 3588 453606274 453606230 4.890000e-07 67.6
57 TraesCS7B01G005100 chrUn 83.077 65 10 1 3526 3589 374576822 374576758 2.950000e-04 58.4
58 TraesCS7B01G005100 chr5B 94.303 1492 74 3 6069 7558 554675584 554674102 0.000000e+00 2274.0
59 TraesCS7B01G005100 chr5B 88.235 272 28 4 6069 6338 610820561 610820830 9.460000e-84 322.0
60 TraesCS7B01G005100 chr5B 97.436 156 3 1 3799 3953 440262888 440262733 1.620000e-66 265.0
61 TraesCS7B01G005100 chr5B 95.455 66 3 0 3218 3283 493170858 493170793 1.040000e-18 106.0
62 TraesCS7B01G005100 chr5B 95.455 66 3 0 4513 4578 493170793 493170858 1.040000e-18 106.0
63 TraesCS7B01G005100 chr4A 93.164 1492 86 6 6069 7558 651141934 651140457 0.000000e+00 2176.0
64 TraesCS7B01G005100 chr4A 95.604 91 3 1 3709 3799 658220127 658220216 2.200000e-30 145.0
65 TraesCS7B01G005100 chr4A 83.448 145 23 1 4207 4351 4010179 4010036 4.760000e-27 134.0
66 TraesCS7B01G005100 chr4A 83.448 145 23 1 3445 3589 4010036 4010179 4.760000e-27 134.0
67 TraesCS7B01G005100 chr2B 90.678 1298 96 13 6069 7364 252095078 252093804 0.000000e+00 1703.0
68 TraesCS7B01G005100 chr2B 94.982 857 40 3 6703 7558 752904495 752903641 0.000000e+00 1341.0
69 TraesCS7B01G005100 chr2B 93.798 645 39 1 6069 6712 752913708 752913064 0.000000e+00 968.0
70 TraesCS7B01G005100 chr2B 94.811 212 10 1 7348 7558 591287564 591287353 5.650000e-86 329.0
71 TraesCS7B01G005100 chr2B 97.484 159 2 2 3799 3956 632039652 632039495 3.480000e-68 270.0
72 TraesCS7B01G005100 chr2B 96.667 90 3 0 3704 3793 38668686 38668775 4.720000e-32 150.0
73 TraesCS7B01G005100 chr2B 96.629 89 2 1 3711 3799 517750716 517750803 6.110000e-31 147.0
74 TraesCS7B01G005100 chr5D 87.766 752 73 14 5027 5770 89978618 89979358 0.000000e+00 861.0
75 TraesCS7B01G005100 chr5D 91.909 618 45 3 5029 5641 510899651 510899034 0.000000e+00 859.0
76 TraesCS7B01G005100 chr5D 94.715 246 12 1 2523 2768 89978862 89978618 1.540000e-101 381.0
77 TraesCS7B01G005100 chr5D 93.089 246 16 1 2522 2766 510899406 510899651 7.210000e-95 359.0
78 TraesCS7B01G005100 chr5D 92.683 246 17 1 2522 2766 544061721 544061966 3.350000e-93 353.0
79 TraesCS7B01G005100 chr4D 87.766 752 73 12 5029 5773 91474840 91474101 0.000000e+00 861.0
80 TraesCS7B01G005100 chr4D 87.717 749 78 11 5029 5770 381069520 381070261 0.000000e+00 861.0
81 TraesCS7B01G005100 chr4D 95.195 437 17 3 5635 6070 232982509 232982942 0.000000e+00 688.0
82 TraesCS7B01G005100 chr4D 93.061 245 17 0 2522 2766 91474596 91474840 7.210000e-95 359.0
83 TraesCS7B01G005100 chr4D 91.837 245 19 1 2523 2766 489381763 489381519 2.610000e-89 340.0
84 TraesCS7B01G005100 chr4D 81.250 144 27 0 3445 3588 314930445 314930302 4.790000e-22 117.0
85 TraesCS7B01G005100 chr4D 80.921 152 26 3 3445 3594 466839136 466838986 4.790000e-22 117.0
86 TraesCS7B01G005100 chr4D 81.699 153 17 9 3445 3590 500724516 500724664 4.790000e-22 117.0
87 TraesCS7B01G005100 chr4D 80.263 152 21 7 3445 3590 316527503 316527355 1.040000e-18 106.0
88 TraesCS7B01G005100 chr4D 90.909 66 6 0 3218 3283 348580074 348580009 1.040000e-13 89.8
89 TraesCS7B01G005100 chr4D 90.909 66 6 0 4513 4578 348580009 348580074 1.040000e-13 89.8
90 TraesCS7B01G005100 chr3D 91.586 618 46 4 5029 5641 539825286 539825902 0.000000e+00 848.0
91 TraesCS7B01G005100 chr3D 91.667 612 46 3 5035 5641 612424555 612423944 0.000000e+00 843.0
92 TraesCS7B01G005100 chr3D 95.853 434 15 3 5638 6070 169679806 169679375 0.000000e+00 699.0
93 TraesCS7B01G005100 chr3D 92.653 245 17 1 2522 2766 175078298 175078055 1.210000e-92 351.0
94 TraesCS7B01G005100 chr3D 95.652 92 4 0 3704 3795 49546786 49546695 1.700000e-31 148.0
95 TraesCS7B01G005100 chr3D 82.119 151 16 9 3445 3588 595967028 595966882 1.330000e-22 119.0
96 TraesCS7B01G005100 chr3D 96.610 59 2 0 3226 3284 480368085 480368027 1.740000e-16 99.0
97 TraesCS7B01G005100 chr3D 96.610 59 2 0 4512 4570 480368027 480368085 1.740000e-16 99.0
98 TraesCS7B01G005100 chr2D 91.304 621 50 2 5025 5641 120694908 120694288 0.000000e+00 845.0
99 TraesCS7B01G005100 chr2D 95.195 437 18 3 5635 6070 301441090 301440656 0.000000e+00 688.0
100 TraesCS7B01G005100 chr2D 75.372 1413 255 61 1001 2389 560212063 560210720 5.050000e-166 595.0
101 TraesCS7B01G005100 chr2D 73.556 1350 262 56 1001 2319 560205759 560204474 1.950000e-115 427.0
102 TraesCS7B01G005100 chr2D 92.771 249 18 0 2522 2770 120694660 120694908 2.000000e-95 361.0
103 TraesCS7B01G005100 chr2D 92.713 247 16 2 2522 2767 349685428 349685673 9.330000e-94 355.0
104 TraesCS7B01G005100 chr2D 94.681 94 3 2 3707 3799 12723678 12723770 2.200000e-30 145.0
105 TraesCS7B01G005100 chr2D 82.877 146 21 3 4208 4351 299891715 299891572 2.210000e-25 128.0
106 TraesCS7B01G005100 chr2D 82.877 146 21 3 3445 3588 299891572 299891715 2.210000e-25 128.0
107 TraesCS7B01G005100 chr2D 81.646 158 17 10 4201 4351 384257025 384256873 3.700000e-23 121.0
108 TraesCS7B01G005100 chr2D 81.646 158 17 10 3445 3595 384256873 384257025 3.700000e-23 121.0
109 TraesCS7B01G005100 chr1D 95.872 436 17 1 5635 6070 117731629 117731195 0.000000e+00 704.0
110 TraesCS7B01G005100 chr1D 95.890 438 13 5 5635 6070 241208764 241208330 0.000000e+00 704.0
111 TraesCS7B01G005100 chr1D 95.662 438 15 4 5635 6070 320799019 320798584 0.000000e+00 701.0
112 TraesCS7B01G005100 chr1D 95.423 437 18 2 5635 6070 219235893 219235458 0.000000e+00 695.0
113 TraesCS7B01G005100 chr1D 92.742 248 18 0 2522 2769 410396424 410396177 7.210000e-95 359.0
114 TraesCS7B01G005100 chr1D 92.653 245 17 1 2522 2766 84130126 84130369 1.210000e-92 351.0
115 TraesCS7B01G005100 chr1D 92.339 248 18 1 2522 2768 365932855 365933102 1.210000e-92 351.0
116 TraesCS7B01G005100 chr1D 92.213 244 19 0 2523 2766 24526605 24526848 5.610000e-91 346.0
117 TraesCS7B01G005100 chr1D 91.016 256 21 2 2522 2776 316175964 316175710 2.020000e-90 344.0
118 TraesCS7B01G005100 chr1D 97.727 88 2 0 3707 3794 457209430 457209343 1.310000e-32 152.0
119 TraesCS7B01G005100 chr1D 92.424 66 5 0 4513 4578 28560801 28560736 2.250000e-15 95.3
120 TraesCS7B01G005100 chr1D 92.424 66 5 0 3218 3283 28560736 28560801 2.250000e-15 95.3
121 TraesCS7B01G005100 chr1D 84.211 57 9 0 19 75 442046014 442046070 1.000000e-03 56.5
122 TraesCS7B01G005100 chr6D 95.413 436 19 1 5635 6070 360626192 360626626 0.000000e+00 693.0
123 TraesCS7B01G005100 chr6D 92.400 250 15 3 2523 2772 360621188 360620943 3.350000e-93 353.0
124 TraesCS7B01G005100 chr6D 92.276 246 19 0 2523 2768 390102602 390102357 4.340000e-92 350.0
125 TraesCS7B01G005100 chr6D 91.532 248 21 0 2523 2770 202317320 202317567 7.260000e-90 342.0
126 TraesCS7B01G005100 chr6D 91.803 244 20 0 2523 2766 209385972 209386215 2.610000e-89 340.0
127 TraesCS7B01G005100 chr6D 91.803 244 18 2 2523 2765 332262668 332262426 9.390000e-89 339.0
128 TraesCS7B01G005100 chr6D 91.429 245 21 0 2522 2766 440184878 440185122 3.380000e-88 337.0
129 TraesCS7B01G005100 chr6D 91.429 245 20 1 2522 2766 160766046 160765803 1.220000e-87 335.0
130 TraesCS7B01G005100 chr6D 90.800 250 21 2 2523 2771 435491360 435491112 4.370000e-87 333.0
131 TraesCS7B01G005100 chr6D 91.020 245 22 0 2523 2767 218705922 218706166 1.570000e-86 331.0
132 TraesCS7B01G005100 chr6D 90.119 253 24 1 2522 2773 239125915 239125663 2.030000e-85 327.0
133 TraesCS7B01G005100 chr6D 89.494 257 26 1 2522 2777 154515063 154514807 2.630000e-84 324.0
134 TraesCS7B01G005100 chr6D 81.507 146 23 3 3445 3588 438321877 438321734 4.790000e-22 117.0
135 TraesCS7B01G005100 chr6D 80.132 151 18 8 3445 3588 40427787 40427932 1.340000e-17 102.0
136 TraesCS7B01G005100 chr6D 80.000 150 21 6 3445 3588 336841772 336841626 1.340000e-17 102.0
137 TraesCS7B01G005100 chr6D 79.470 151 24 5 3445 3590 72351033 72350885 4.830000e-17 100.0
138 TraesCS7B01G005100 chr6D 81.301 123 16 6 3455 3573 362258012 362258131 8.070000e-15 93.5
139 TraesCS7B01G005100 chr6D 78.808 151 20 8 3445 3588 40409415 40409560 2.900000e-14 91.6
140 TraesCS7B01G005100 chr6D 78.146 151 24 8 3445 3589 2364325 2364178 3.760000e-13 87.9
141 TraesCS7B01G005100 chr6A 87.669 592 53 13 6379 6965 407127436 407126860 0.000000e+00 671.0
142 TraesCS7B01G005100 chr6A 93.773 273 17 0 6973 7245 407126675 407126403 1.960000e-110 411.0
143 TraesCS7B01G005100 chr6A 84.733 131 16 3 3445 3573 105059203 105059075 2.210000e-25 128.0
144 TraesCS7B01G005100 chr2A 89.272 522 42 7 6446 6965 60650919 60651428 6.390000e-180 641.0
145 TraesCS7B01G005100 chr2A 75.053 1403 254 62 1001 2389 700024351 700023031 1.420000e-156 564.0
146 TraesCS7B01G005100 chr6B 94.000 300 17 1 6069 6368 441506093 441506391 3.220000e-123 453.0
147 TraesCS7B01G005100 chr6B 95.755 212 8 1 7348 7558 645492810 645493021 2.610000e-89 340.0
148 TraesCS7B01G005100 chr6B 97.849 93 0 1 3705 3795 184811812 184811904 7.850000e-35 159.0
149 TraesCS7B01G005100 chr6B 81.879 149 26 1 4204 4351 15881250 15881102 2.860000e-24 124.0
150 TraesCS7B01G005100 chr6B 81.879 149 26 1 3445 3592 15881102 15881250 2.860000e-24 124.0
151 TraesCS7B01G005100 chr6B 82.192 146 21 4 3445 3588 649523540 649523398 3.700000e-23 121.0
152 TraesCS7B01G005100 chr4B 93.137 306 17 3 6065 6368 655002695 655002998 5.380000e-121 446.0
153 TraesCS7B01G005100 chr4B 81.250 144 27 0 3445 3588 795563 795706 4.790000e-22 117.0
154 TraesCS7B01G005100 chr4B 81.507 146 22 4 3445 3588 115040783 115040641 1.720000e-21 115.0
155 TraesCS7B01G005100 chr4B 81.633 147 20 6 3445 3588 499224520 499224662 1.720000e-21 115.0
156 TraesCS7B01G005100 chr4B 80.952 147 24 3 3445 3589 406389314 406389458 6.200000e-21 113.0
157 TraesCS7B01G005100 chr1A 92.276 246 19 0 2522 2767 117542761 117542516 4.340000e-92 350.0
158 TraesCS7B01G005100 chr1A 94.737 209 11 0 6973 7181 119398442 119398234 7.310000e-85 326.0
159 TraesCS7B01G005100 chr1A 98.113 159 2 1 3796 3953 588470274 588470116 7.470000e-70 276.0
160 TraesCS7B01G005100 chr1A 96.855 159 4 1 3796 3953 530170032 530170190 1.620000e-66 265.0
161 TraesCS7B01G005100 chr1A 82.946 129 22 0 3445 3573 295587994 295588122 4.790000e-22 117.0
162 TraesCS7B01G005100 chr3A 97.468 158 3 1 3796 3953 545907418 545907262 1.250000e-67 268.0
163 TraesCS7B01G005100 chr3A 97.468 158 3 1 3796 3953 723675351 723675195 1.250000e-67 268.0
164 TraesCS7B01G005100 chr3A 92.308 65 4 1 3219 3283 97503152 97503089 2.900000e-14 91.6
165 TraesCS7B01G005100 chr3A 92.308 65 4 1 4513 4577 97503089 97503152 2.900000e-14 91.6
166 TraesCS7B01G005100 chr1B 98.824 85 1 0 3711 3795 12257510 12257594 1.310000e-32 152.0
167 TraesCS7B01G005100 chr1B 82.069 145 26 0 4207 4351 531122175 531122031 2.860000e-24 124.0
168 TraesCS7B01G005100 chr1B 82.069 145 26 0 3445 3589 531122031 531122175 2.860000e-24 124.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G005100 chr7B 2889113 2896670 7557 True 13958.000000 13958 100.000000 1 7558 1 chr7B.!!$R1 7557
1 TraesCS7B01G005100 chr7B 2891394 2894154 2760 False 2159.000000 2159 99.412000 2517 5277 2 chr7B.!!$F4 2760
2 TraesCS7B01G005100 chr7A 579789735 579791211 1476 True 2041.000000 2041 91.566000 6069 7558 1 chr7A.!!$R1 1489
3 TraesCS7B01G005100 chr7A 64620422 64626258 5836 True 1264.250000 3528 92.374750 1 5038 4 chr7A.!!$R2 5037
4 TraesCS7B01G005100 chr7A 64620422 64623641 3219 False 452.666667 529 92.719667 2757 3707 3 chr7A.!!$F2 950
5 TraesCS7B01G005100 chr7D 60299701 60303509 3808 True 1118.000000 2979 94.044000 417 5031 4 chr7D.!!$R3 4614
6 TraesCS7B01G005100 chr7D 478117545 478118149 604 False 878.000000 878 92.904000 5029 5631 1 chr7D.!!$F2 602
7 TraesCS7B01G005100 chr7D 427089856 427090594 738 False 846.000000 846 87.433000 5029 5770 1 chr7D.!!$F1 741
8 TraesCS7B01G005100 chr7D 60299701 60301327 1626 False 430.333333 854 93.908667 2764 3707 3 chr7D.!!$F3 943
9 TraesCS7B01G005100 chr7D 60326265 60328211 1946 True 244.000000 281 87.417000 1 420 2 chr7D.!!$R4 419
10 TraesCS7B01G005100 chr3B 118814002 118815494 1492 False 2318.000000 2318 94.709000 6068 7558 1 chr3B.!!$F1 1490
11 TraesCS7B01G005100 chrUn 3173425 3174916 1491 False 2278.000000 2278 94.236000 6069 7558 1 chrUn.!!$F1 1489
12 TraesCS7B01G005100 chr5B 554674102 554675584 1482 True 2274.000000 2274 94.303000 6069 7558 1 chr5B.!!$R3 1489
13 TraesCS7B01G005100 chr4A 651140457 651141934 1477 True 2176.000000 2176 93.164000 6069 7558 1 chr4A.!!$R2 1489
14 TraesCS7B01G005100 chr2B 252093804 252095078 1274 True 1703.000000 1703 90.678000 6069 7364 1 chr2B.!!$R1 1295
15 TraesCS7B01G005100 chr2B 752903641 752904495 854 True 1341.000000 1341 94.982000 6703 7558 1 chr2B.!!$R4 855
16 TraesCS7B01G005100 chr2B 752913064 752913708 644 True 968.000000 968 93.798000 6069 6712 1 chr2B.!!$R5 643
17 TraesCS7B01G005100 chr5D 89978618 89979358 740 False 861.000000 861 87.766000 5027 5770 1 chr5D.!!$F1 743
18 TraesCS7B01G005100 chr5D 510899034 510899651 617 True 859.000000 859 91.909000 5029 5641 1 chr5D.!!$R2 612
19 TraesCS7B01G005100 chr4D 91474101 91474840 739 True 861.000000 861 87.766000 5029 5773 1 chr4D.!!$R1 744
20 TraesCS7B01G005100 chr4D 381069520 381070261 741 False 861.000000 861 87.717000 5029 5770 1 chr4D.!!$F4 741
21 TraesCS7B01G005100 chr3D 539825286 539825902 616 False 848.000000 848 91.586000 5029 5641 1 chr3D.!!$F2 612
22 TraesCS7B01G005100 chr3D 612423944 612424555 611 True 843.000000 843 91.667000 5035 5641 1 chr3D.!!$R6 606
23 TraesCS7B01G005100 chr2D 120694288 120694908 620 True 845.000000 845 91.304000 5025 5641 1 chr2D.!!$R1 616
24 TraesCS7B01G005100 chr2D 560210720 560212063 1343 True 595.000000 595 75.372000 1001 2389 1 chr2D.!!$R6 1388
25 TraesCS7B01G005100 chr2D 560204474 560205759 1285 True 427.000000 427 73.556000 1001 2319 1 chr2D.!!$R5 1318
26 TraesCS7B01G005100 chr6A 407126403 407127436 1033 True 541.000000 671 90.721000 6379 7245 2 chr6A.!!$R2 866
27 TraesCS7B01G005100 chr2A 60650919 60651428 509 False 641.000000 641 89.272000 6446 6965 1 chr2A.!!$F1 519
28 TraesCS7B01G005100 chr2A 700023031 700024351 1320 True 564.000000 564 75.053000 1001 2389 1 chr2A.!!$R1 1388

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
490 2021 0.393808 TCATTGCCCTTCCTTACCGC 60.394 55.000 0.00 0.0 0.00 5.68 F
1388 2941 2.125350 GACGGAGCTTGCCAGGAG 60.125 66.667 0.00 0.0 0.00 3.69 F
1870 3432 0.454452 CTACCGCGCAAAAGAAAGCC 60.454 55.000 8.75 0.0 0.00 4.35 F
2594 4185 0.180171 TGGATCAACCGTATGCCCTG 59.820 55.000 0.00 0.0 42.61 4.45 F
3797 8055 0.032813 CTGATTTCAGGTGGGGGCAT 60.033 55.000 0.00 0.0 40.20 4.40 F
3970 8228 0.172803 CCCCTCTTCGTACGGTCAAG 59.827 60.000 16.52 11.9 0.00 3.02 F
3971 8229 0.886563 CCCTCTTCGTACGGTCAAGT 59.113 55.000 16.52 0.0 0.00 3.16 F
5341 12105 1.001378 CAGGAAAGCAACAGAAACGGG 60.001 52.381 0.00 0.0 0.00 5.28 F
6061 12832 0.105039 CCTTGCGTCTGTAGGATCCC 59.895 60.000 8.55 0.0 0.00 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1425 2978 1.072159 GACCTGCAGAGCCAACACT 59.928 57.895 17.39 0.0 0.00 3.55 R
2521 4112 1.263356 ATGGGCAGCCATATCAATGC 58.737 50.000 15.19 0.0 37.95 3.56 R
3707 7796 0.339859 AGGATGGGTCTCACCTGCTA 59.660 55.000 0.00 0.0 38.64 3.49 R
3951 8209 0.172803 CTTGACCGTACGAAGAGGGG 59.827 60.000 18.76 0.0 0.00 4.79 R
5321 12085 1.001378 CCCGTTTCTGTTGCTTTCCTG 60.001 52.381 0.00 0.0 0.00 3.86 R
5938 12709 0.107017 AATGGGAAGTGGCCTCGATG 60.107 55.000 3.32 0.0 0.00 3.84 R
5939 12710 0.181350 GAATGGGAAGTGGCCTCGAT 59.819 55.000 3.32 0.0 0.00 3.59 R
6375 13146 0.179062 GGCCCATGTAGCTGACAGAG 60.179 60.000 6.65 0.0 42.79 3.35 R
7037 13989 1.077930 GCTGAGATGCTCAAGGCCA 60.078 57.895 5.01 0.0 40.18 5.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
115 116 7.800155 TGGTTTTCAATTTCCTTTTTGGATC 57.200 32.000 0.00 0.00 45.68 3.36
143 144 5.796424 ATTCACCAAGCTCATTTGAACTT 57.204 34.783 0.00 0.00 31.23 2.66
249 258 4.039973 TGTTGACTTCTGTTAGGGGTAGTG 59.960 45.833 0.00 0.00 0.00 2.74
282 1806 2.026262 ACCGTTGGAATCAGGCTACAAT 60.026 45.455 0.00 0.00 0.00 2.71
287 1811 4.524802 TGGAATCAGGCTACAATGGAAT 57.475 40.909 0.00 0.00 0.00 3.01
421 1951 5.343307 AAAATTACAATCAGGTCCATGGC 57.657 39.130 6.96 1.78 0.00 4.40
431 1961 2.286045 TCCATGGCCCACCTAGCA 60.286 61.111 6.96 0.00 36.63 3.49
470 2000 2.434185 GCCGAAGACGCACCATCA 60.434 61.111 0.00 0.00 38.29 3.07
475 2005 1.935873 CGAAGACGCACCATCATCATT 59.064 47.619 0.00 0.00 0.00 2.57
481 2012 1.117150 GCACCATCATCATTGCCCTT 58.883 50.000 0.00 0.00 0.00 3.95
490 2021 0.393808 TCATTGCCCTTCCTTACCGC 60.394 55.000 0.00 0.00 0.00 5.68
559 2091 7.425882 TGAAAAATCGTGTGTTACAAACTTACG 59.574 33.333 4.03 10.79 40.29 3.18
596 2128 7.761038 AGTAAAATAGTATAGGGCCATTTGC 57.239 36.000 6.18 0.00 40.16 3.68
645 2177 5.438761 AGTGCCACAATTCAAGTCTTAAC 57.561 39.130 0.00 0.00 0.00 2.01
646 2178 4.887071 AGTGCCACAATTCAAGTCTTAACA 59.113 37.500 0.00 0.00 0.00 2.41
649 2181 6.701400 GTGCCACAATTCAAGTCTTAACATTT 59.299 34.615 0.00 0.00 0.00 2.32
651 2183 8.417106 TGCCACAATTCAAGTCTTAACATTTAA 58.583 29.630 0.00 0.00 0.00 1.52
652 2184 9.255304 GCCACAATTCAAGTCTTAACATTTAAA 57.745 29.630 0.00 0.00 0.00 1.52
743 2290 7.424803 TGCGAAATTTCTCATGGGTAAATATG 58.575 34.615 15.92 0.00 0.00 1.78
835 2382 8.936864 CAAGTTTTAGAAAGTACAGTGGATAGG 58.063 37.037 0.00 0.00 0.00 2.57
843 2390 5.700402 AGTACAGTGGATAGGCAAGAATT 57.300 39.130 0.00 0.00 0.00 2.17
929 2476 9.689976 CATCAACCAAAACATTTACTATGAACA 57.310 29.630 0.00 0.00 0.00 3.18
964 2511 3.026694 AGGTAACGTACACTACCCATCC 58.973 50.000 14.09 0.00 46.39 3.51
1016 2563 4.147449 CATGGCTCGCGTCCTCCA 62.147 66.667 17.94 14.99 0.00 3.86
1180 2727 3.099619 GACGATGACGACGCCGGTA 62.100 63.158 1.90 0.00 42.66 4.02
1388 2941 2.125350 GACGGAGCTTGCCAGGAG 60.125 66.667 0.00 0.00 0.00 3.69
1445 2998 0.819259 GTGTTGGCTCTGCAGGTCAA 60.819 55.000 15.13 15.32 0.00 3.18
1626 3179 2.532256 CGACCGCGACGACCTCTAT 61.532 63.158 8.23 0.00 40.82 1.98
1639 3192 1.437573 CTCTATGACGCCTTCGCCA 59.562 57.895 0.00 0.00 39.84 5.69
1728 3290 4.059459 GCCACGTTCGTGCTGTCG 62.059 66.667 18.14 6.94 35.03 4.35
1754 3316 1.271054 CCTCCTGCGGAATATCAAGGG 60.271 57.143 0.00 0.00 0.00 3.95
1870 3432 0.454452 CTACCGCGCAAAAGAAAGCC 60.454 55.000 8.75 0.00 0.00 4.35
1994 3565 4.069232 TCTCTGCTTCGCCACGGG 62.069 66.667 0.00 0.00 0.00 5.28
2014 3585 2.026822 GGAAGCAAGAAGGAGATCACCA 60.027 50.000 12.05 0.00 0.00 4.17
2040 3611 3.470888 GCGGGAGGCCTCTTAGCA 61.471 66.667 31.36 0.00 34.80 3.49
2434 4014 2.803492 GCAGGTTTGTCGTCAGAACTCT 60.803 50.000 0.00 0.00 0.00 3.24
2453 4039 8.357402 AGAACTCTGAAAGTCTACTCTCTTTTC 58.643 37.037 0.00 0.00 37.17 2.29
2462 4053 5.873164 AGTCTACTCTCTTTTCTCTCGAGAC 59.127 44.000 12.08 0.00 37.14 3.36
2498 4089 4.487019 CTCTTCTTACGGTCAAGTCTTCC 58.513 47.826 0.00 0.00 0.00 3.46
2499 4090 3.257624 TCTTCTTACGGTCAAGTCTTCCC 59.742 47.826 0.00 0.00 0.00 3.97
2500 4091 2.885616 TCTTACGGTCAAGTCTTCCCT 58.114 47.619 0.00 0.00 0.00 4.20
2501 4092 3.236896 TCTTACGGTCAAGTCTTCCCTT 58.763 45.455 0.00 0.00 0.00 3.95
2502 4093 3.006537 TCTTACGGTCAAGTCTTCCCTTG 59.993 47.826 0.00 0.00 42.57 3.61
2503 4094 1.420430 ACGGTCAAGTCTTCCCTTGA 58.580 50.000 0.00 0.00 46.43 3.02
2509 4100 3.743521 TCAAGTCTTCCCTTGACATGTG 58.256 45.455 1.15 0.00 44.39 3.21
2510 4101 2.816087 CAAGTCTTCCCTTGACATGTGG 59.184 50.000 1.15 0.00 43.65 4.17
2511 4102 1.168714 GTCTTCCCTTGACATGTGGC 58.831 55.000 1.15 0.00 34.80 5.01
2512 4103 0.770499 TCTTCCCTTGACATGTGGCA 59.230 50.000 1.15 0.00 0.00 4.92
2513 4104 1.355381 TCTTCCCTTGACATGTGGCAT 59.645 47.619 1.15 0.00 30.06 4.40
2514 4105 2.173519 CTTCCCTTGACATGTGGCATT 58.826 47.619 1.15 0.00 30.06 3.56
2515 4106 1.548081 TCCCTTGACATGTGGCATTG 58.452 50.000 1.15 0.00 30.06 2.82
2516 4107 1.075212 TCCCTTGACATGTGGCATTGA 59.925 47.619 1.15 0.00 30.06 2.57
2517 4108 2.104967 CCCTTGACATGTGGCATTGAT 58.895 47.619 1.15 0.00 30.06 2.57
2518 4109 3.053768 TCCCTTGACATGTGGCATTGATA 60.054 43.478 1.15 0.00 30.06 2.15
2519 4110 3.893200 CCCTTGACATGTGGCATTGATAT 59.107 43.478 1.15 0.00 30.06 1.63
2520 4111 4.261867 CCCTTGACATGTGGCATTGATATG 60.262 45.833 1.15 3.10 30.06 1.78
2521 4112 4.261867 CCTTGACATGTGGCATTGATATGG 60.262 45.833 1.15 4.29 30.06 2.74
2594 4185 0.180171 TGGATCAACCGTATGCCCTG 59.820 55.000 0.00 0.00 42.61 4.45
2789 4380 1.741706 CTTCCATGGTGATGTGTGAGC 59.258 52.381 12.58 0.00 0.00 4.26
2832 4423 6.875195 TGGGTTTGTAAGTACTAACTATGTGC 59.125 38.462 13.09 0.00 40.25 4.57
3656 7745 2.167487 GCATAGCATAGTCCCTAGCCTC 59.833 54.545 0.00 0.00 0.00 4.70
3707 7796 0.035056 CCTCCAAAGACCTGCCGATT 60.035 55.000 0.00 0.00 0.00 3.34
3708 7797 1.209504 CCTCCAAAGACCTGCCGATTA 59.790 52.381 0.00 0.00 0.00 1.75
3709 7798 2.555199 CTCCAAAGACCTGCCGATTAG 58.445 52.381 0.00 0.00 0.00 1.73
3710 7799 1.017387 CCAAAGACCTGCCGATTAGC 58.983 55.000 0.00 0.00 0.00 3.09
3722 7979 0.824109 CGATTAGCAGGTGAGACCCA 59.176 55.000 0.00 0.00 39.75 4.51
3723 7980 1.414181 CGATTAGCAGGTGAGACCCAT 59.586 52.381 0.00 0.00 39.75 4.00
3795 8053 4.344237 CTGATTTCAGGTGGGGGC 57.656 61.111 0.00 0.00 40.20 5.80
3796 8054 1.383799 CTGATTTCAGGTGGGGGCA 59.616 57.895 0.00 0.00 40.20 5.36
3797 8055 0.032813 CTGATTTCAGGTGGGGGCAT 60.033 55.000 0.00 0.00 40.20 4.40
3799 8057 0.324645 GATTTCAGGTGGGGGCATGT 60.325 55.000 0.00 0.00 0.00 3.21
3820 8078 3.184986 GTGGCATTCACAAATCACAAAGC 59.815 43.478 0.00 0.00 45.39 3.51
3823 8081 4.092383 GGCATTCACAAATCACAAAGCATC 59.908 41.667 0.00 0.00 0.00 3.91
3826 8084 2.562298 TCACAAATCACAAAGCATCCCC 59.438 45.455 0.00 0.00 0.00 4.81
3903 8161 1.977056 CCACATGTCATCCATCAGGG 58.023 55.000 0.00 0.00 34.83 4.45
3904 8162 1.315690 CACATGTCATCCATCAGGGC 58.684 55.000 0.00 0.00 36.21 5.19
3916 8174 2.238319 ATCAGGGCGGGTCTCACCTA 62.238 60.000 0.00 0.00 38.64 3.08
3917 8175 1.987855 CAGGGCGGGTCTCACCTAA 60.988 63.158 0.00 0.00 38.64 2.69
3919 8177 0.620700 AGGGCGGGTCTCACCTAATT 60.621 55.000 0.00 0.00 38.64 1.40
3920 8178 0.255033 GGGCGGGTCTCACCTAATTT 59.745 55.000 0.00 0.00 38.64 1.82
3921 8179 1.487558 GGGCGGGTCTCACCTAATTTA 59.512 52.381 0.00 0.00 38.64 1.40
3922 8180 2.105993 GGGCGGGTCTCACCTAATTTAT 59.894 50.000 0.00 0.00 38.64 1.40
3923 8181 3.325716 GGGCGGGTCTCACCTAATTTATA 59.674 47.826 0.00 0.00 38.64 0.98
3924 8182 4.019591 GGGCGGGTCTCACCTAATTTATAT 60.020 45.833 0.00 0.00 38.64 0.86
3925 8183 4.935808 GGCGGGTCTCACCTAATTTATATG 59.064 45.833 0.00 0.00 38.64 1.78
3926 8184 5.279809 GGCGGGTCTCACCTAATTTATATGA 60.280 44.000 0.00 0.00 38.64 2.15
3927 8185 5.869888 GCGGGTCTCACCTAATTTATATGAG 59.130 44.000 9.34 9.34 38.64 2.90
3928 8186 6.295123 GCGGGTCTCACCTAATTTATATGAGA 60.295 42.308 12.45 12.45 42.63 3.27
3933 8191 8.195165 TCTCACCTAATTTATATGAGACCTGG 57.805 38.462 12.45 0.00 40.59 4.45
3934 8192 7.789831 TCTCACCTAATTTATATGAGACCTGGT 59.210 37.037 0.00 0.00 40.59 4.00
3935 8193 7.963532 TCACCTAATTTATATGAGACCTGGTC 58.036 38.462 19.20 19.20 0.00 4.02
3936 8194 7.789831 TCACCTAATTTATATGAGACCTGGTCT 59.210 37.037 28.70 28.70 46.42 3.85
3965 8223 2.460757 TTTTTCCCCTCTTCGTACGG 57.539 50.000 16.52 0.00 0.00 4.02
3966 8224 1.341080 TTTTCCCCTCTTCGTACGGT 58.659 50.000 16.52 0.00 0.00 4.83
3967 8225 0.890683 TTTCCCCTCTTCGTACGGTC 59.109 55.000 16.52 0.00 0.00 4.79
3968 8226 0.251297 TTCCCCTCTTCGTACGGTCA 60.251 55.000 16.52 0.00 0.00 4.02
3969 8227 0.251297 TCCCCTCTTCGTACGGTCAA 60.251 55.000 16.52 1.21 0.00 3.18
3970 8228 0.172803 CCCCTCTTCGTACGGTCAAG 59.827 60.000 16.52 11.90 0.00 3.02
3971 8229 0.886563 CCCTCTTCGTACGGTCAAGT 59.113 55.000 16.52 0.00 0.00 3.16
4011 8274 7.324935 TCTTTTGCAGATACTATAACGGAACA 58.675 34.615 0.00 0.00 0.00 3.18
5275 12039 2.225066 TGGGCAGCCATATCAATGCATA 60.225 45.455 15.19 0.00 40.46 3.14
5321 12085 4.631813 ACTCCGATGAACTGTTTGCTATTC 59.368 41.667 0.00 0.00 0.00 1.75
5341 12105 1.001378 CAGGAAAGCAACAGAAACGGG 60.001 52.381 0.00 0.00 0.00 5.28
5354 12118 1.244019 AAACGGGCAGCCAGATCAAC 61.244 55.000 19.66 0.00 0.00 3.18
5371 12135 4.422546 TCAACGTGTGTGTGATATACGA 57.577 40.909 0.00 0.00 38.08 3.43
5390 12157 3.120792 CGACATACGGTTCCGAATGAAT 58.879 45.455 18.28 0.00 38.46 2.57
5405 12172 6.596106 TCCGAATGAATTGTTTTCGATTAGGA 59.404 34.615 12.91 0.00 43.61 2.94
5437 12205 9.908152 AACATAAATGGTTTAGCTTAACAAGAC 57.092 29.630 16.72 0.90 0.00 3.01
5490 12258 9.315525 GGAGGTTAATTCTAGAACAAGTACATC 57.684 37.037 7.48 8.76 0.00 3.06
5589 12360 6.452480 CGTTGAATGTATATAATGCTCCGTCG 60.452 42.308 0.00 0.00 0.00 5.12
5604 12375 6.331845 TGCTCCGTCGTATTAGTTGAATTAA 58.668 36.000 0.00 0.00 0.00 1.40
5605 12376 6.254157 TGCTCCGTCGTATTAGTTGAATTAAC 59.746 38.462 0.00 0.00 39.65 2.01
5606 12377 6.292008 GCTCCGTCGTATTAGTTGAATTAACC 60.292 42.308 0.00 0.00 40.24 2.85
5607 12378 6.866480 TCCGTCGTATTAGTTGAATTAACCT 58.134 36.000 0.00 0.00 40.24 3.50
5608 12379 6.974622 TCCGTCGTATTAGTTGAATTAACCTC 59.025 38.462 0.00 0.00 40.24 3.85
5609 12380 6.075205 CCGTCGTATTAGTTGAATTAACCTCG 60.075 42.308 0.00 0.00 40.24 4.63
5610 12381 6.688385 CGTCGTATTAGTTGAATTAACCTCGA 59.312 38.462 0.00 0.00 40.24 4.04
5611 12382 7.097128 CGTCGTATTAGTTGAATTAACCTCGAG 60.097 40.741 5.13 5.13 40.24 4.04
5612 12383 7.167136 GTCGTATTAGTTGAATTAACCTCGAGG 59.833 40.741 30.11 30.11 40.24 4.63
5624 12395 2.472695 CCTCGAGGTCCATGTTTTGA 57.527 50.000 24.04 0.00 0.00 2.69
5625 12396 2.778299 CCTCGAGGTCCATGTTTTGAA 58.222 47.619 24.04 0.00 0.00 2.69
5626 12397 3.146066 CCTCGAGGTCCATGTTTTGAAA 58.854 45.455 24.04 0.00 0.00 2.69
5627 12398 3.568007 CCTCGAGGTCCATGTTTTGAAAA 59.432 43.478 24.04 0.00 0.00 2.29
5628 12399 4.537015 CTCGAGGTCCATGTTTTGAAAAC 58.463 43.478 13.55 13.55 0.00 2.43
5629 12400 3.948473 TCGAGGTCCATGTTTTGAAAACA 59.052 39.130 23.72 23.72 34.31 2.83
5630 12401 4.582656 TCGAGGTCCATGTTTTGAAAACAT 59.417 37.500 25.78 25.78 41.18 2.71
5631 12402 5.765677 TCGAGGTCCATGTTTTGAAAACATA 59.234 36.000 29.29 16.54 38.69 2.29
5632 12403 6.432783 TCGAGGTCCATGTTTTGAAAACATAT 59.567 34.615 29.29 16.24 38.69 1.78
5633 12404 6.747280 CGAGGTCCATGTTTTGAAAACATATC 59.253 38.462 29.29 21.80 38.69 1.63
5634 12405 6.620678 AGGTCCATGTTTTGAAAACATATCG 58.379 36.000 29.29 20.77 38.69 2.92
5635 12406 6.432783 AGGTCCATGTTTTGAAAACATATCGA 59.567 34.615 29.29 22.24 38.69 3.59
5636 12407 7.040062 AGGTCCATGTTTTGAAAACATATCGAA 60.040 33.333 29.29 14.24 38.69 3.71
5637 12408 7.759433 GGTCCATGTTTTGAAAACATATCGAAT 59.241 33.333 29.29 9.90 38.69 3.34
5638 12409 8.586273 GTCCATGTTTTGAAAACATATCGAATG 58.414 33.333 29.29 19.17 38.69 2.67
5639 12410 8.303156 TCCATGTTTTGAAAACATATCGAATGT 58.697 29.630 29.29 8.59 38.69 2.71
5640 12411 9.566530 CCATGTTTTGAAAACATATCGAATGTA 57.433 29.630 29.29 4.10 38.69 2.29
5655 12426 9.973450 ATATCGAATGTATATAATGCTCTGTCC 57.027 33.333 0.00 0.00 0.00 4.02
5656 12427 7.468141 TCGAATGTATATAATGCTCTGTCCT 57.532 36.000 0.00 0.00 0.00 3.85
5657 12428 8.575649 TCGAATGTATATAATGCTCTGTCCTA 57.424 34.615 0.00 0.00 0.00 2.94
5658 12429 9.190317 TCGAATGTATATAATGCTCTGTCCTAT 57.810 33.333 0.00 0.00 0.00 2.57
5659 12430 9.809096 CGAATGTATATAATGCTCTGTCCTATT 57.191 33.333 0.00 0.00 0.00 1.73
5661 12432 9.896645 AATGTATATAATGCTCTGTCCTATTGG 57.103 33.333 0.00 0.00 0.00 3.16
5662 12433 8.435931 TGTATATAATGCTCTGTCCTATTGGT 57.564 34.615 0.00 0.00 34.23 3.67
5663 12434 8.880244 TGTATATAATGCTCTGTCCTATTGGTT 58.120 33.333 0.00 0.00 34.23 3.67
5664 12435 9.155975 GTATATAATGCTCTGTCCTATTGGTTG 57.844 37.037 0.00 0.00 34.23 3.77
5665 12436 4.574674 AATGCTCTGTCCTATTGGTTGA 57.425 40.909 0.00 0.00 34.23 3.18
5666 12437 4.574674 ATGCTCTGTCCTATTGGTTGAA 57.425 40.909 0.00 0.00 34.23 2.69
5667 12438 4.574674 TGCTCTGTCCTATTGGTTGAAT 57.425 40.909 0.00 0.00 34.23 2.57
5668 12439 4.922206 TGCTCTGTCCTATTGGTTGAATT 58.078 39.130 0.00 0.00 34.23 2.17
5669 12440 6.061022 TGCTCTGTCCTATTGGTTGAATTA 57.939 37.500 0.00 0.00 34.23 1.40
5852 12623 6.702716 AAAATTACAAAACAAGGACCTCGA 57.297 33.333 0.00 0.00 0.00 4.04
5853 12624 5.941948 AATTACAAAACAAGGACCTCGAG 57.058 39.130 5.13 5.13 0.00 4.04
5854 12625 2.256117 ACAAAACAAGGACCTCGAGG 57.744 50.000 30.11 30.11 42.17 4.63
5873 12644 9.712305 CCTCGAGGTTAATTCAACTAATATGAT 57.288 33.333 24.04 0.00 37.30 2.45
5875 12646 9.489084 TCGAGGTTAATTCAACTAATATGATGG 57.511 33.333 0.00 0.00 37.30 3.51
5876 12647 9.489084 CGAGGTTAATTCAACTAATATGATGGA 57.511 33.333 0.00 0.00 37.30 3.41
5878 12649 9.289782 AGGTTAATTCAACTAATATGATGGAGC 57.710 33.333 0.00 0.00 37.30 4.70
5879 12650 9.066892 GGTTAATTCAACTAATATGATGGAGCA 57.933 33.333 0.00 0.00 37.30 4.26
5880 12651 9.884465 GTTAATTCAACTAATATGATGGAGCAC 57.116 33.333 0.00 0.00 34.06 4.40
5881 12652 9.851686 TTAATTCAACTAATATGATGGAGCACT 57.148 29.630 0.00 0.00 0.00 4.40
5894 12665 8.783833 ATGATGGAGCACTATATACATTCAAC 57.216 34.615 0.00 0.00 0.00 3.18
5895 12666 7.734942 TGATGGAGCACTATATACATTCAACA 58.265 34.615 0.00 0.00 0.00 3.33
5896 12667 7.657354 TGATGGAGCACTATATACATTCAACAC 59.343 37.037 0.00 0.00 0.00 3.32
5897 12668 6.883744 TGGAGCACTATATACATTCAACACA 58.116 36.000 0.00 0.00 0.00 3.72
5898 12669 7.334858 TGGAGCACTATATACATTCAACACAA 58.665 34.615 0.00 0.00 0.00 3.33
5899 12670 7.992608 TGGAGCACTATATACATTCAACACAAT 59.007 33.333 0.00 0.00 0.00 2.71
5900 12671 8.840321 GGAGCACTATATACATTCAACACAATT 58.160 33.333 0.00 0.00 0.00 2.32
5916 12687 9.509855 TCAACACAATTAAATGTTTACAGTGAC 57.490 29.630 0.00 0.00 36.92 3.67
5917 12688 8.751335 CAACACAATTAAATGTTTACAGTGACC 58.249 33.333 0.00 0.00 36.92 4.02
5918 12689 7.430441 ACACAATTAAATGTTTACAGTGACCC 58.570 34.615 0.00 0.00 0.00 4.46
5919 12690 7.068839 ACACAATTAAATGTTTACAGTGACCCA 59.931 33.333 0.00 0.00 0.00 4.51
5920 12691 8.087750 CACAATTAAATGTTTACAGTGACCCAT 58.912 33.333 0.00 0.00 0.00 4.00
5921 12692 8.303876 ACAATTAAATGTTTACAGTGACCCATC 58.696 33.333 0.00 0.00 0.00 3.51
5922 12693 8.303156 CAATTAAATGTTTACAGTGACCCATCA 58.697 33.333 0.00 0.00 0.00 3.07
5938 12709 8.050778 TGACCCATCACATCAGTTAATTTAAC 57.949 34.615 10.68 10.68 38.94 2.01
5939 12710 7.667635 TGACCCATCACATCAGTTAATTTAACA 59.332 33.333 18.83 2.61 41.07 2.41
5940 12711 8.593945 ACCCATCACATCAGTTAATTTAACAT 57.406 30.769 18.83 4.63 41.07 2.71
5941 12712 8.686334 ACCCATCACATCAGTTAATTTAACATC 58.314 33.333 18.83 0.00 41.07 3.06
5942 12713 7.857389 CCCATCACATCAGTTAATTTAACATCG 59.143 37.037 18.83 8.83 41.07 3.84
5943 12714 8.611757 CCATCACATCAGTTAATTTAACATCGA 58.388 33.333 18.83 12.90 41.07 3.59
5944 12715 9.642312 CATCACATCAGTTAATTTAACATCGAG 57.358 33.333 18.83 8.80 41.07 4.04
5945 12716 8.196802 TCACATCAGTTAATTTAACATCGAGG 57.803 34.615 18.83 15.20 41.07 4.63
5946 12717 6.907212 CACATCAGTTAATTTAACATCGAGGC 59.093 38.462 18.83 0.00 41.07 4.70
5947 12718 6.038271 ACATCAGTTAATTTAACATCGAGGCC 59.962 38.462 18.83 0.00 41.07 5.19
5948 12719 5.492895 TCAGTTAATTTAACATCGAGGCCA 58.507 37.500 18.83 0.00 41.07 5.36
5949 12720 5.353123 TCAGTTAATTTAACATCGAGGCCAC 59.647 40.000 18.83 0.00 41.07 5.01
5950 12721 5.354234 CAGTTAATTTAACATCGAGGCCACT 59.646 40.000 18.83 0.00 41.07 4.00
5951 12722 5.944007 AGTTAATTTAACATCGAGGCCACTT 59.056 36.000 18.83 0.00 41.07 3.16
5952 12723 4.965119 AATTTAACATCGAGGCCACTTC 57.035 40.909 5.01 0.00 0.00 3.01
5953 12724 2.396590 TTAACATCGAGGCCACTTCC 57.603 50.000 5.01 0.00 0.00 3.46
5954 12725 0.539986 TAACATCGAGGCCACTTCCC 59.460 55.000 5.01 0.00 0.00 3.97
5955 12726 1.488705 AACATCGAGGCCACTTCCCA 61.489 55.000 5.01 0.00 0.00 4.37
5956 12727 1.274703 ACATCGAGGCCACTTCCCAT 61.275 55.000 5.01 0.00 0.00 4.00
5957 12728 0.107017 CATCGAGGCCACTTCCCATT 60.107 55.000 5.01 0.00 0.00 3.16
5958 12729 0.181350 ATCGAGGCCACTTCCCATTC 59.819 55.000 5.01 0.00 0.00 2.67
5959 12730 1.452108 CGAGGCCACTTCCCATTCC 60.452 63.158 5.01 0.00 0.00 3.01
5960 12731 1.452108 GAGGCCACTTCCCATTCCG 60.452 63.158 5.01 0.00 0.00 4.30
5961 12732 2.198304 GAGGCCACTTCCCATTCCGT 62.198 60.000 5.01 0.00 0.00 4.69
5962 12733 1.749258 GGCCACTTCCCATTCCGTC 60.749 63.158 0.00 0.00 0.00 4.79
5963 12734 1.002624 GCCACTTCCCATTCCGTCA 60.003 57.895 0.00 0.00 0.00 4.35
5964 12735 1.305930 GCCACTTCCCATTCCGTCAC 61.306 60.000 0.00 0.00 0.00 3.67
5965 12736 0.676782 CCACTTCCCATTCCGTCACC 60.677 60.000 0.00 0.00 0.00 4.02
5966 12737 0.676782 CACTTCCCATTCCGTCACCC 60.677 60.000 0.00 0.00 0.00 4.61
5967 12738 1.131303 ACTTCCCATTCCGTCACCCA 61.131 55.000 0.00 0.00 0.00 4.51
5968 12739 0.255890 CTTCCCATTCCGTCACCCAT 59.744 55.000 0.00 0.00 0.00 4.00
5969 12740 0.254747 TTCCCATTCCGTCACCCATC 59.745 55.000 0.00 0.00 0.00 3.51
5970 12741 0.620410 TCCCATTCCGTCACCCATCT 60.620 55.000 0.00 0.00 0.00 2.90
5971 12742 0.464373 CCCATTCCGTCACCCATCTG 60.464 60.000 0.00 0.00 0.00 2.90
5972 12743 0.541392 CCATTCCGTCACCCATCTGA 59.459 55.000 0.00 0.00 0.00 3.27
5973 12744 1.141657 CCATTCCGTCACCCATCTGAT 59.858 52.381 0.00 0.00 0.00 2.90
5974 12745 2.216046 CATTCCGTCACCCATCTGATG 58.784 52.381 10.71 10.71 0.00 3.07
5975 12746 1.567357 TTCCGTCACCCATCTGATGA 58.433 50.000 18.92 0.00 29.75 2.92
5976 12747 0.824109 TCCGTCACCCATCTGATGAC 59.176 55.000 18.92 8.91 39.50 3.06
5977 12748 0.826715 CCGTCACCCATCTGATGACT 59.173 55.000 18.92 0.45 40.51 3.41
5978 12749 2.031870 CCGTCACCCATCTGATGACTA 58.968 52.381 18.92 0.00 40.51 2.59
5979 12750 2.223829 CCGTCACCCATCTGATGACTAC 60.224 54.545 18.92 9.92 40.51 2.73
5980 12751 2.690497 CGTCACCCATCTGATGACTACT 59.310 50.000 18.92 0.00 40.51 2.57
5981 12752 3.243234 CGTCACCCATCTGATGACTACTC 60.243 52.174 18.92 4.42 40.51 2.59
5982 12753 3.068873 GTCACCCATCTGATGACTACTCC 59.931 52.174 18.92 0.00 39.72 3.85
5983 12754 3.033909 CACCCATCTGATGACTACTCCA 58.966 50.000 18.92 0.00 0.00 3.86
5984 12755 3.069300 CACCCATCTGATGACTACTCCAG 59.931 52.174 18.92 0.00 0.00 3.86
5985 12756 3.052566 ACCCATCTGATGACTACTCCAGA 60.053 47.826 18.92 0.00 39.60 3.86
5986 12757 3.320541 CCCATCTGATGACTACTCCAGAC 59.679 52.174 18.92 0.00 38.32 3.51
5987 12758 4.214310 CCATCTGATGACTACTCCAGACT 58.786 47.826 18.92 0.00 38.32 3.24
5988 12759 4.648762 CCATCTGATGACTACTCCAGACTT 59.351 45.833 18.92 0.00 38.32 3.01
5989 12760 5.830457 CCATCTGATGACTACTCCAGACTTA 59.170 44.000 18.92 0.00 38.32 2.24
5990 12761 6.016360 CCATCTGATGACTACTCCAGACTTAG 60.016 46.154 18.92 0.00 38.32 2.18
5991 12762 4.884744 TCTGATGACTACTCCAGACTTAGC 59.115 45.833 0.00 0.00 31.45 3.09
5992 12763 4.600062 TGATGACTACTCCAGACTTAGCA 58.400 43.478 0.00 0.00 0.00 3.49
5993 12764 4.399618 TGATGACTACTCCAGACTTAGCAC 59.600 45.833 0.00 0.00 0.00 4.40
5994 12765 3.763057 TGACTACTCCAGACTTAGCACA 58.237 45.455 0.00 0.00 0.00 4.57
5995 12766 3.506455 TGACTACTCCAGACTTAGCACAC 59.494 47.826 0.00 0.00 0.00 3.82
5996 12767 3.759618 GACTACTCCAGACTTAGCACACT 59.240 47.826 0.00 0.00 0.00 3.55
5997 12768 4.153411 ACTACTCCAGACTTAGCACACTT 58.847 43.478 0.00 0.00 0.00 3.16
5998 12769 5.322754 ACTACTCCAGACTTAGCACACTTA 58.677 41.667 0.00 0.00 0.00 2.24
5999 12770 5.773680 ACTACTCCAGACTTAGCACACTTAA 59.226 40.000 0.00 0.00 0.00 1.85
6000 12771 4.884247 ACTCCAGACTTAGCACACTTAAC 58.116 43.478 0.00 0.00 0.00 2.01
6001 12772 4.589374 ACTCCAGACTTAGCACACTTAACT 59.411 41.667 0.00 0.00 0.00 2.24
6002 12773 5.070580 ACTCCAGACTTAGCACACTTAACTT 59.929 40.000 0.00 0.00 0.00 2.66
6003 12774 5.297547 TCCAGACTTAGCACACTTAACTTG 58.702 41.667 0.00 0.00 0.00 3.16
6004 12775 4.452455 CCAGACTTAGCACACTTAACTTGG 59.548 45.833 0.00 0.00 0.00 3.61
6005 12776 4.452455 CAGACTTAGCACACTTAACTTGGG 59.548 45.833 0.00 0.00 0.00 4.12
6006 12777 4.347000 AGACTTAGCACACTTAACTTGGGA 59.653 41.667 0.00 0.00 0.00 4.37
6007 12778 4.642429 ACTTAGCACACTTAACTTGGGAG 58.358 43.478 0.00 0.00 0.00 4.30
6008 12779 4.102681 ACTTAGCACACTTAACTTGGGAGT 59.897 41.667 0.00 0.00 37.87 3.85
6010 12781 3.477530 AGCACACTTAACTTGGGAGTTC 58.522 45.455 0.00 0.00 44.75 3.01
6011 12782 3.136626 AGCACACTTAACTTGGGAGTTCT 59.863 43.478 0.00 0.00 44.75 3.01
6012 12783 3.251004 GCACACTTAACTTGGGAGTTCTG 59.749 47.826 0.00 0.00 44.75 3.02
6013 12784 4.451900 CACACTTAACTTGGGAGTTCTGT 58.548 43.478 0.00 0.00 44.75 3.41
6014 12785 4.881850 CACACTTAACTTGGGAGTTCTGTT 59.118 41.667 0.00 0.00 44.75 3.16
6015 12786 6.053005 CACACTTAACTTGGGAGTTCTGTTA 58.947 40.000 0.00 0.00 44.75 2.41
6016 12787 6.202954 CACACTTAACTTGGGAGTTCTGTTAG 59.797 42.308 0.00 0.00 44.75 2.34
6017 12788 6.099269 ACACTTAACTTGGGAGTTCTGTTAGA 59.901 38.462 0.00 0.00 44.75 2.10
6018 12789 7.162082 CACTTAACTTGGGAGTTCTGTTAGAT 58.838 38.462 0.00 0.00 44.75 1.98
6019 12790 7.118390 CACTTAACTTGGGAGTTCTGTTAGATG 59.882 40.741 0.00 0.00 44.75 2.90
6020 12791 5.825593 AACTTGGGAGTTCTGTTAGATGA 57.174 39.130 0.00 0.00 42.35 2.92
6021 12792 5.413309 ACTTGGGAGTTCTGTTAGATGAG 57.587 43.478 0.00 0.00 29.87 2.90
6022 12793 3.895232 TGGGAGTTCTGTTAGATGAGC 57.105 47.619 0.00 0.00 0.00 4.26
6023 12794 3.445008 TGGGAGTTCTGTTAGATGAGCT 58.555 45.455 0.00 0.00 0.00 4.09
6024 12795 4.610333 TGGGAGTTCTGTTAGATGAGCTA 58.390 43.478 0.00 0.00 0.00 3.32
6025 12796 5.211973 TGGGAGTTCTGTTAGATGAGCTAT 58.788 41.667 0.00 0.00 0.00 2.97
6026 12797 5.303078 TGGGAGTTCTGTTAGATGAGCTATC 59.697 44.000 0.00 0.00 35.97 2.08
6027 12798 5.457140 GGAGTTCTGTTAGATGAGCTATCG 58.543 45.833 0.00 0.00 40.86 2.92
6028 12799 5.446143 AGTTCTGTTAGATGAGCTATCGG 57.554 43.478 0.00 0.00 40.86 4.18
6029 12800 4.890581 AGTTCTGTTAGATGAGCTATCGGT 59.109 41.667 0.00 0.00 40.86 4.69
6030 12801 6.062749 AGTTCTGTTAGATGAGCTATCGGTA 58.937 40.000 0.00 0.00 40.86 4.02
6031 12802 6.205853 AGTTCTGTTAGATGAGCTATCGGTAG 59.794 42.308 0.00 0.00 40.86 3.18
6032 12803 5.004448 TCTGTTAGATGAGCTATCGGTAGG 58.996 45.833 4.57 0.00 40.86 3.18
6033 12804 4.079970 TGTTAGATGAGCTATCGGTAGGG 58.920 47.826 4.57 0.00 40.86 3.53
6034 12805 4.202535 TGTTAGATGAGCTATCGGTAGGGA 60.203 45.833 4.57 0.00 40.86 4.20
6035 12806 3.527507 AGATGAGCTATCGGTAGGGAA 57.472 47.619 4.57 0.00 40.86 3.97
6036 12807 3.426615 AGATGAGCTATCGGTAGGGAAG 58.573 50.000 4.57 0.00 40.86 3.46
6037 12808 1.329256 TGAGCTATCGGTAGGGAAGC 58.671 55.000 4.57 0.00 0.00 3.86
6038 12809 1.133450 TGAGCTATCGGTAGGGAAGCT 60.133 52.381 4.57 0.00 45.82 3.74
6039 12810 1.271102 GAGCTATCGGTAGGGAAGCTG 59.729 57.143 4.57 0.00 43.31 4.24
6040 12811 0.318762 GCTATCGGTAGGGAAGCTGG 59.681 60.000 4.57 0.00 0.00 4.85
6041 12812 1.705873 CTATCGGTAGGGAAGCTGGT 58.294 55.000 0.00 0.00 0.00 4.00
6042 12813 1.614413 CTATCGGTAGGGAAGCTGGTC 59.386 57.143 0.00 0.00 0.00 4.02
6043 12814 1.049289 ATCGGTAGGGAAGCTGGTCC 61.049 60.000 0.00 0.00 36.90 4.46
6044 12815 1.686110 CGGTAGGGAAGCTGGTCCT 60.686 63.158 4.45 6.25 37.85 3.85
6045 12816 1.265454 CGGTAGGGAAGCTGGTCCTT 61.265 60.000 4.45 0.00 37.85 3.36
6046 12817 0.253327 GGTAGGGAAGCTGGTCCTTG 59.747 60.000 4.45 0.00 37.85 3.61
6047 12818 0.393132 GTAGGGAAGCTGGTCCTTGC 60.393 60.000 4.45 0.00 37.85 4.01
6048 12819 1.899437 TAGGGAAGCTGGTCCTTGCG 61.899 60.000 4.45 0.00 37.85 4.85
6049 12820 2.032681 GGAAGCTGGTCCTTGCGT 59.967 61.111 0.00 0.00 34.56 5.24
6050 12821 2.035442 GGAAGCTGGTCCTTGCGTC 61.035 63.158 12.28 12.28 37.06 5.19
6051 12822 1.004440 GAAGCTGGTCCTTGCGTCT 60.004 57.895 13.02 0.19 35.43 4.18
6052 12823 1.294659 GAAGCTGGTCCTTGCGTCTG 61.295 60.000 13.02 0.00 35.43 3.51
6053 12824 2.031163 GCTGGTCCTTGCGTCTGT 59.969 61.111 0.00 0.00 0.00 3.41
6054 12825 1.185618 AGCTGGTCCTTGCGTCTGTA 61.186 55.000 0.00 0.00 0.00 2.74
6055 12826 0.737715 GCTGGTCCTTGCGTCTGTAG 60.738 60.000 0.00 0.00 0.00 2.74
6056 12827 0.108615 CTGGTCCTTGCGTCTGTAGG 60.109 60.000 0.00 0.00 0.00 3.18
6057 12828 0.541063 TGGTCCTTGCGTCTGTAGGA 60.541 55.000 0.00 0.00 35.75 2.94
6058 12829 0.824759 GGTCCTTGCGTCTGTAGGAT 59.175 55.000 0.00 0.00 40.05 3.24
6059 12830 1.202428 GGTCCTTGCGTCTGTAGGATC 60.202 57.143 0.00 0.00 40.05 3.36
6060 12831 1.112113 TCCTTGCGTCTGTAGGATCC 58.888 55.000 2.48 2.48 33.23 3.36
6061 12832 0.105039 CCTTGCGTCTGTAGGATCCC 59.895 60.000 8.55 0.00 0.00 3.85
6062 12833 1.115467 CTTGCGTCTGTAGGATCCCT 58.885 55.000 8.55 0.00 37.71 4.20
6063 12834 1.067821 CTTGCGTCTGTAGGATCCCTC 59.932 57.143 8.55 2.19 34.61 4.30
6064 12835 0.259065 TGCGTCTGTAGGATCCCTCT 59.741 55.000 8.55 0.00 34.61 3.69
6065 12836 1.342076 TGCGTCTGTAGGATCCCTCTT 60.342 52.381 8.55 0.00 34.61 2.85
6066 12837 1.757699 GCGTCTGTAGGATCCCTCTTT 59.242 52.381 8.55 0.00 34.61 2.52
6075 12846 3.118531 AGGATCCCTCTTTGCACTACAT 58.881 45.455 8.55 0.00 0.00 2.29
6204 12975 8.081633 TCGTAAACTGAAATTAACGACCTTCTA 58.918 33.333 0.00 0.00 0.00 2.10
6296 13067 2.125310 CCGCGTAGGCATCCAACA 60.125 61.111 4.92 0.00 39.92 3.33
6375 13146 7.980742 GGACGAACCCATTTATTATTGTTTC 57.019 36.000 0.00 0.00 0.00 2.78
6398 13169 0.035056 GTCAGCTACATGGGCCAAGT 60.035 55.000 19.39 19.39 0.00 3.16
6433 13205 6.148811 CAGCCTTTTTATTTTCTAGGACGTGA 59.851 38.462 0.00 0.00 0.00 4.35
6555 13330 5.815740 ACGTTTATTCCAGCGATAGTGAAAT 59.184 36.000 0.00 0.00 39.35 2.17
6859 13634 0.247460 CAGCGACATTCCAGAGACCA 59.753 55.000 0.00 0.00 0.00 4.02
6870 13645 1.229658 AGAGACCACCTTCCCCCAG 60.230 63.158 0.00 0.00 0.00 4.45
6888 13663 2.439338 TGTTGCTTGGTGTGCCGT 60.439 55.556 0.00 0.00 37.67 5.68
7037 13989 6.613153 AGCTTAGATCTTCTTGGTGTACTT 57.387 37.500 0.00 0.00 0.00 2.24
7224 14177 9.388506 TGAATTTGGAAACTAAAATTTGAGCAA 57.611 25.926 2.11 0.00 36.40 3.91
7247 14200 8.830580 GCAATAGTTTGAATTGATGAGTAGCTA 58.169 33.333 0.00 0.00 36.61 3.32
7376 14329 0.098025 AACCGCGGTAATGCAATTCG 59.902 50.000 34.44 0.00 37.87 3.34
7515 14469 2.482336 CAGCCATACAAAGTGTACGCAA 59.518 45.455 9.48 0.00 35.42 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
115 116 5.645067 TCAAATGAGCTTGGTGAATAGTGAG 59.355 40.000 0.00 0.00 0.00 3.51
143 144 3.673338 CGAACGTGATGTTTCTTAGCTCA 59.327 43.478 0.00 0.00 42.09 4.26
249 258 0.464452 CCAACGGTCCTCTCCCATAC 59.536 60.000 0.00 0.00 0.00 2.39
409 1939 2.484868 TAGGTGGGCCATGGACCTGA 62.485 60.000 36.85 16.28 45.59 3.86
421 1951 3.535561 CTTGTAGTCATTGCTAGGTGGG 58.464 50.000 0.00 0.00 0.00 4.61
431 1961 0.804989 GCCAAGCGCTTGTAGTCATT 59.195 50.000 39.50 8.06 38.85 2.57
470 2000 1.750682 GCGGTAAGGAAGGGCAATGAT 60.751 52.381 0.00 0.00 0.00 2.45
475 2005 2.668632 CTGCGGTAAGGAAGGGCA 59.331 61.111 0.00 0.00 0.00 5.36
481 2012 3.766691 GTCCGGCTGCGGTAAGGA 61.767 66.667 0.00 0.00 0.00 3.36
490 2021 0.817634 TCACAAGGTTTGTCCGGCTG 60.818 55.000 0.00 0.00 43.23 4.85
497 2028 9.515226 ACATATAGTACATTTCACAAGGTTTGT 57.485 29.630 0.00 0.00 46.75 2.83
533 2065 7.425882 CGTAAGTTTGTAACACACGATTTTTCA 59.574 33.333 9.09 0.00 40.82 2.69
534 2066 7.562061 GCGTAAGTTTGTAACACACGATTTTTC 60.562 37.037 15.44 0.03 40.82 2.29
596 2128 4.875544 TTTCTCATTTTTATCCGGCTCG 57.124 40.909 0.00 0.00 0.00 5.03
645 2177 9.743057 TGTTGAAACTGAGGTACAATTTAAATG 57.257 29.630 0.39 0.00 27.86 2.32
646 2178 9.965824 CTGTTGAAACTGAGGTACAATTTAAAT 57.034 29.630 0.00 0.00 27.86 1.40
649 2181 7.057894 ACCTGTTGAAACTGAGGTACAATTTA 58.942 34.615 3.94 0.00 34.59 1.40
651 2183 5.445964 ACCTGTTGAAACTGAGGTACAATT 58.554 37.500 3.94 0.00 34.59 2.32
652 2184 5.048846 ACCTGTTGAAACTGAGGTACAAT 57.951 39.130 3.94 0.00 34.59 2.71
654 2186 5.607477 CTTACCTGTTGAAACTGAGGTACA 58.393 41.667 10.43 4.45 37.32 2.90
655 2187 4.451435 GCTTACCTGTTGAAACTGAGGTAC 59.549 45.833 10.43 0.00 37.32 3.34
656 2188 4.101898 TGCTTACCTGTTGAAACTGAGGTA 59.898 41.667 7.86 7.86 36.84 3.08
657 2189 3.118038 TGCTTACCTGTTGAAACTGAGGT 60.118 43.478 9.43 9.43 38.45 3.85
658 2190 3.476552 TGCTTACCTGTTGAAACTGAGG 58.523 45.455 2.01 0.66 0.00 3.86
663 2210 5.462068 GGTTGAATTGCTTACCTGTTGAAAC 59.538 40.000 0.00 0.00 0.00 2.78
743 2290 0.824759 AGGCACATAGGTTCGAGTCC 59.175 55.000 1.17 1.17 0.00 3.85
806 2353 7.794041 TCCACTGTACTTTCTAAAACTTGGTA 58.206 34.615 0.00 0.00 0.00 3.25
809 2356 8.936864 CCTATCCACTGTACTTTCTAAAACTTG 58.063 37.037 0.00 0.00 0.00 3.16
835 2382 5.588240 TGATTGATGATGCAGAATTCTTGC 58.412 37.500 17.68 17.68 0.00 4.01
843 2390 6.709018 ACATTGATTGATTGATGATGCAGA 57.291 33.333 0.00 0.00 0.00 4.26
929 2476 2.979813 CGTTACCTACGTAGCGTTGTTT 59.020 45.455 17.41 0.00 45.14 2.83
930 2477 2.584791 CGTTACCTACGTAGCGTTGTT 58.415 47.619 17.41 0.00 45.14 2.83
931 2478 2.247311 CGTTACCTACGTAGCGTTGT 57.753 50.000 17.41 11.68 45.14 3.32
964 2511 4.520846 GCCTGGTCGCGCGAAATG 62.521 66.667 36.57 24.72 0.00 2.32
986 2533 4.458666 CCATGCTCAGCTGGCTAG 57.541 61.111 22.36 11.62 0.00 3.42
1180 2727 1.081277 GGAGGTTGGAGAGGAGGGT 59.919 63.158 0.00 0.00 0.00 4.34
1425 2978 1.072159 GACCTGCAGAGCCAACACT 59.928 57.895 17.39 0.00 0.00 3.55
1429 2982 1.228245 GGTTGACCTGCAGAGCCAA 60.228 57.895 17.39 12.79 0.00 4.52
1745 3307 1.227556 GCGACCGTGCCCTTGATAT 60.228 57.895 0.00 0.00 0.00 1.63
1746 3308 2.185867 GCGACCGTGCCCTTGATA 59.814 61.111 0.00 0.00 0.00 2.15
1944 3515 4.691359 AGGTACGTGGCGGGGACT 62.691 66.667 0.00 0.00 0.00 3.85
1994 3565 3.006247 GTGGTGATCTCCTTCTTGCTTC 58.994 50.000 14.65 0.00 0.00 3.86
2434 4014 6.711194 TCGAGAGAAAAGAGAGTAGACTTTCA 59.289 38.462 3.34 0.00 35.66 2.69
2453 4039 1.444836 AGACTTGACCGTCTCGAGAG 58.555 55.000 17.22 7.84 40.04 3.20
2462 4053 1.896465 AGAAGAGGGAAGACTTGACCG 59.104 52.381 0.00 0.00 0.00 4.79
2498 4089 4.261867 CCATATCAATGCCACATGTCAAGG 60.262 45.833 0.00 0.00 0.00 3.61
2499 4090 4.794981 GCCATATCAATGCCACATGTCAAG 60.795 45.833 0.00 0.00 0.00 3.02
2500 4091 3.068448 GCCATATCAATGCCACATGTCAA 59.932 43.478 0.00 0.00 0.00 3.18
2501 4092 2.624364 GCCATATCAATGCCACATGTCA 59.376 45.455 0.00 0.00 0.00 3.58
2502 4093 2.624364 TGCCATATCAATGCCACATGTC 59.376 45.455 0.00 0.00 0.00 3.06
2503 4094 2.668625 TGCCATATCAATGCCACATGT 58.331 42.857 0.00 0.00 0.00 3.21
2504 4095 3.953712 ATGCCATATCAATGCCACATG 57.046 42.857 0.00 0.00 0.00 3.21
2505 4096 3.898741 TCAATGCCATATCAATGCCACAT 59.101 39.130 0.00 0.00 0.00 3.21
2506 4097 3.297736 TCAATGCCATATCAATGCCACA 58.702 40.909 0.00 0.00 0.00 4.17
2507 4098 4.530710 ATCAATGCCATATCAATGCCAC 57.469 40.909 0.00 0.00 0.00 5.01
2508 4099 5.128008 CCATATCAATGCCATATCAATGCCA 59.872 40.000 0.00 0.00 0.00 4.92
2509 4100 5.597806 CCATATCAATGCCATATCAATGCC 58.402 41.667 0.00 0.00 0.00 4.40
2510 4101 5.047847 GCCATATCAATGCCATATCAATGC 58.952 41.667 0.00 0.00 0.00 3.56
2511 4102 6.273071 CAGCCATATCAATGCCATATCAATG 58.727 40.000 0.00 0.00 0.00 2.82
2512 4103 5.163447 GCAGCCATATCAATGCCATATCAAT 60.163 40.000 0.00 0.00 32.49 2.57
2513 4104 4.158949 GCAGCCATATCAATGCCATATCAA 59.841 41.667 0.00 0.00 32.49 2.57
2514 4105 3.697542 GCAGCCATATCAATGCCATATCA 59.302 43.478 0.00 0.00 32.49 2.15
2515 4106 4.303086 GCAGCCATATCAATGCCATATC 57.697 45.455 0.00 0.00 32.49 1.63
2521 4112 1.263356 ATGGGCAGCCATATCAATGC 58.737 50.000 15.19 0.00 37.95 3.56
2789 4380 2.171448 CCCATAACCTGAAGGGAGACTG 59.829 54.545 0.56 0.00 44.30 3.51
3404 6171 9.543783 AAAGGGAGACAGTATTCGTTTATATTC 57.456 33.333 0.00 0.00 0.00 1.75
3414 6181 7.652507 CCGTATTTAGAAAGGGAGACAGTATTC 59.347 40.741 0.00 0.00 0.00 1.75
3656 7745 2.295349 AGCTGGCAAGAGTGACATTTTG 59.705 45.455 0.00 0.00 43.72 2.44
3707 7796 0.339859 AGGATGGGTCTCACCTGCTA 59.660 55.000 0.00 0.00 38.64 3.49
3708 7797 1.081833 AGGATGGGTCTCACCTGCT 59.918 57.895 0.00 0.00 38.64 4.24
3709 7798 1.222936 CAGGATGGGTCTCACCTGC 59.777 63.158 7.99 0.00 42.30 4.85
3799 8057 3.181468 TGCTTTGTGATTTGTGAATGCCA 60.181 39.130 0.00 0.00 0.00 4.92
3802 8060 4.628333 GGGATGCTTTGTGATTTGTGAATG 59.372 41.667 0.00 0.00 0.00 2.67
3805 8063 2.562298 GGGGATGCTTTGTGATTTGTGA 59.438 45.455 0.00 0.00 0.00 3.58
3807 8065 1.901833 GGGGGATGCTTTGTGATTTGT 59.098 47.619 0.00 0.00 0.00 2.83
3808 8066 2.678471 GGGGGATGCTTTGTGATTTG 57.322 50.000 0.00 0.00 0.00 2.32
3853 8111 7.909121 CACAAATCACAAAGCATCTAATCTCTC 59.091 37.037 0.00 0.00 0.00 3.20
3903 8161 5.790593 TCATATAAATTAGGTGAGACCCGC 58.209 41.667 0.00 0.00 39.75 6.13
3904 8162 7.228314 TCTCATATAAATTAGGTGAGACCCG 57.772 40.000 12.93 0.00 40.06 5.28
3946 8204 1.693606 ACCGTACGAAGAGGGGAAAAA 59.306 47.619 18.76 0.00 0.00 1.94
3947 8205 1.273327 GACCGTACGAAGAGGGGAAAA 59.727 52.381 18.76 0.00 0.00 2.29
3948 8206 0.890683 GACCGTACGAAGAGGGGAAA 59.109 55.000 18.76 0.00 0.00 3.13
3949 8207 0.251297 TGACCGTACGAAGAGGGGAA 60.251 55.000 18.76 0.00 0.00 3.97
3950 8208 0.251297 TTGACCGTACGAAGAGGGGA 60.251 55.000 18.76 0.00 0.00 4.81
3951 8209 0.172803 CTTGACCGTACGAAGAGGGG 59.827 60.000 18.76 0.00 0.00 4.79
3952 8210 0.886563 ACTTGACCGTACGAAGAGGG 59.113 55.000 18.76 0.48 0.00 4.30
3953 8211 1.811359 AGACTTGACCGTACGAAGAGG 59.189 52.381 18.76 1.31 0.00 3.69
3954 8212 3.188873 AGAAGACTTGACCGTACGAAGAG 59.811 47.826 18.76 11.12 0.00 2.85
3955 8213 3.144506 AGAAGACTTGACCGTACGAAGA 58.855 45.455 18.76 0.00 0.00 2.87
3956 8214 3.555917 AGAAGACTTGACCGTACGAAG 57.444 47.619 18.76 14.84 0.00 3.79
3957 8215 3.567164 AGAAGAAGACTTGACCGTACGAA 59.433 43.478 18.76 1.85 36.39 3.85
3958 8216 3.144506 AGAAGAAGACTTGACCGTACGA 58.855 45.455 18.76 0.00 36.39 3.43
3959 8217 3.555917 AGAAGAAGACTTGACCGTACG 57.444 47.619 8.69 8.69 36.39 3.67
3960 8218 4.685165 GGAAAGAAGAAGACTTGACCGTAC 59.315 45.833 0.00 0.00 36.39 3.67
3961 8219 4.587684 AGGAAAGAAGAAGACTTGACCGTA 59.412 41.667 0.00 0.00 36.39 4.02
3962 8220 3.388350 AGGAAAGAAGAAGACTTGACCGT 59.612 43.478 0.00 0.00 36.39 4.83
3963 8221 3.996480 AGGAAAGAAGAAGACTTGACCG 58.004 45.455 0.00 0.00 36.39 4.79
3964 8222 6.058833 AGAAAGGAAAGAAGAAGACTTGACC 58.941 40.000 0.00 0.00 36.39 4.02
3965 8223 7.561021 AAGAAAGGAAAGAAGAAGACTTGAC 57.439 36.000 0.00 0.00 36.39 3.18
3966 8224 8.462016 CAAAAGAAAGGAAAGAAGAAGACTTGA 58.538 33.333 0.00 0.00 36.39 3.02
3967 8225 7.221645 GCAAAAGAAAGGAAAGAAGAAGACTTG 59.778 37.037 0.00 0.00 36.39 3.16
3968 8226 7.093771 TGCAAAAGAAAGGAAAGAAGAAGACTT 60.094 33.333 0.00 0.00 39.24 3.01
3969 8227 6.378280 TGCAAAAGAAAGGAAAGAAGAAGACT 59.622 34.615 0.00 0.00 0.00 3.24
3970 8228 6.564328 TGCAAAAGAAAGGAAAGAAGAAGAC 58.436 36.000 0.00 0.00 0.00 3.01
3971 8229 6.603201 TCTGCAAAAGAAAGGAAAGAAGAAGA 59.397 34.615 0.00 0.00 29.54 2.87
4011 8274 5.648092 GGAACACAGCTACTCCATTAACAAT 59.352 40.000 0.00 0.00 0.00 2.71
4064 8327 9.769093 GATGCAACAAAAAGAATATACGTACTT 57.231 29.630 0.00 0.00 0.00 2.24
5275 12039 1.475280 ACCGTATGCCGTATATCGCAT 59.525 47.619 12.49 12.49 38.77 4.73
5321 12085 1.001378 CCCGTTTCTGTTGCTTTCCTG 60.001 52.381 0.00 0.00 0.00 3.86
5341 12105 1.230635 ACACACGTTGATCTGGCTGC 61.231 55.000 0.00 0.00 0.00 5.25
5354 12118 4.374828 CGTATGTCGTATATCACACACACG 59.625 45.833 0.00 0.00 34.90 4.49
5371 12135 4.258543 ACAATTCATTCGGAACCGTATGT 58.741 39.130 24.04 10.18 43.99 2.29
5390 12157 7.795482 TGTTCTCTTTCCTAATCGAAAACAA 57.205 32.000 0.00 0.00 31.56 2.83
5424 12191 4.310357 TCACACACGTCTTGTTAAGCTA 57.690 40.909 0.00 0.00 35.67 3.32
5426 12193 4.432503 CGTATCACACACGTCTTGTTAAGC 60.433 45.833 0.00 0.00 35.67 3.09
5437 12205 1.892113 TTTGCCGCGTATCACACACG 61.892 55.000 4.92 0.00 42.24 4.49
5476 12244 9.146984 CAAATTAACCTCGATGTACTTGTTCTA 57.853 33.333 0.00 0.00 0.00 2.10
5490 12258 7.539712 AGTCATGTATGTCAAATTAACCTCG 57.460 36.000 0.00 0.00 0.00 4.63
5605 12376 2.472695 TCAAAACATGGACCTCGAGG 57.527 50.000 30.11 30.11 42.17 4.63
5606 12377 4.036262 TGTTTTCAAAACATGGACCTCGAG 59.964 41.667 11.83 5.13 0.00 4.04
5607 12378 3.948473 TGTTTTCAAAACATGGACCTCGA 59.052 39.130 11.83 0.00 0.00 4.04
5608 12379 4.300189 TGTTTTCAAAACATGGACCTCG 57.700 40.909 11.83 0.00 0.00 4.63
5609 12380 6.747280 CGATATGTTTTCAAAACATGGACCTC 59.253 38.462 30.67 19.34 40.70 3.85
5610 12381 6.432783 TCGATATGTTTTCAAAACATGGACCT 59.567 34.615 30.67 12.87 40.70 3.85
5611 12382 6.616947 TCGATATGTTTTCAAAACATGGACC 58.383 36.000 30.67 18.09 40.70 4.46
5612 12383 8.586273 CATTCGATATGTTTTCAAAACATGGAC 58.414 33.333 30.67 21.23 40.70 4.02
5613 12384 8.303156 ACATTCGATATGTTTTCAAAACATGGA 58.697 29.630 30.67 22.74 40.70 3.41
5614 12385 8.464770 ACATTCGATATGTTTTCAAAACATGG 57.535 30.769 30.67 21.28 40.70 3.66
5629 12400 9.973450 GGACAGAGCATTATATACATTCGATAT 57.027 33.333 0.00 0.00 0.00 1.63
5630 12401 9.190317 AGGACAGAGCATTATATACATTCGATA 57.810 33.333 0.00 0.00 0.00 2.92
5631 12402 8.072321 AGGACAGAGCATTATATACATTCGAT 57.928 34.615 0.00 0.00 0.00 3.59
5632 12403 7.468141 AGGACAGAGCATTATATACATTCGA 57.532 36.000 0.00 0.00 0.00 3.71
5633 12404 9.809096 AATAGGACAGAGCATTATATACATTCG 57.191 33.333 0.00 0.00 0.00 3.34
5635 12406 9.896645 CCAATAGGACAGAGCATTATATACATT 57.103 33.333 0.00 0.00 36.89 2.71
5636 12407 9.051259 ACCAATAGGACAGAGCATTATATACAT 57.949 33.333 0.00 0.00 38.69 2.29
5637 12408 8.435931 ACCAATAGGACAGAGCATTATATACA 57.564 34.615 0.00 0.00 38.69 2.29
5638 12409 9.155975 CAACCAATAGGACAGAGCATTATATAC 57.844 37.037 0.00 0.00 38.69 1.47
5639 12410 9.100197 TCAACCAATAGGACAGAGCATTATATA 57.900 33.333 0.00 0.00 38.69 0.86
5640 12411 7.977818 TCAACCAATAGGACAGAGCATTATAT 58.022 34.615 0.00 0.00 38.69 0.86
5641 12412 7.373617 TCAACCAATAGGACAGAGCATTATA 57.626 36.000 0.00 0.00 38.69 0.98
5642 12413 6.252599 TCAACCAATAGGACAGAGCATTAT 57.747 37.500 0.00 0.00 38.69 1.28
5643 12414 5.692115 TCAACCAATAGGACAGAGCATTA 57.308 39.130 0.00 0.00 38.69 1.90
5644 12415 4.574674 TCAACCAATAGGACAGAGCATT 57.425 40.909 0.00 0.00 38.69 3.56
5645 12416 4.574674 TTCAACCAATAGGACAGAGCAT 57.425 40.909 0.00 0.00 38.69 3.79
5646 12417 4.574674 ATTCAACCAATAGGACAGAGCA 57.425 40.909 0.00 0.00 38.69 4.26
5647 12418 6.786207 GTTAATTCAACCAATAGGACAGAGC 58.214 40.000 0.00 0.00 38.69 4.09
5661 12432 5.411669 ACATGGAACTCGAGGTTAATTCAAC 59.588 40.000 18.41 0.00 38.41 3.18
5662 12433 5.556915 ACATGGAACTCGAGGTTAATTCAA 58.443 37.500 18.41 4.80 38.41 2.69
5663 12434 5.160607 ACATGGAACTCGAGGTTAATTCA 57.839 39.130 18.41 5.70 38.41 2.57
5664 12435 6.496338 AAACATGGAACTCGAGGTTAATTC 57.504 37.500 18.41 10.58 38.41 2.17
5665 12436 6.677913 CAAAACATGGAACTCGAGGTTAATT 58.322 36.000 18.41 0.45 38.41 1.40
5666 12437 6.254281 CAAAACATGGAACTCGAGGTTAAT 57.746 37.500 18.41 5.15 38.41 1.40
5667 12438 5.682943 CAAAACATGGAACTCGAGGTTAA 57.317 39.130 18.41 2.59 38.41 2.01
5774 12545 3.582647 TGGCTTGAAGAAGGTGTATCTCA 59.417 43.478 0.00 0.00 0.00 3.27
5781 12552 3.318839 TGTTGATTGGCTTGAAGAAGGTG 59.681 43.478 0.00 0.00 0.00 4.00
5847 12618 9.712305 ATCATATTAGTTGAATTAACCTCGAGG 57.288 33.333 30.11 30.11 40.24 4.63
5849 12620 9.489084 CCATCATATTAGTTGAATTAACCTCGA 57.511 33.333 0.00 0.00 40.24 4.04
5850 12621 9.489084 TCCATCATATTAGTTGAATTAACCTCG 57.511 33.333 0.00 0.00 40.24 4.63
5852 12623 9.289782 GCTCCATCATATTAGTTGAATTAACCT 57.710 33.333 0.00 0.00 40.24 3.50
5853 12624 9.066892 TGCTCCATCATATTAGTTGAATTAACC 57.933 33.333 0.00 0.00 40.24 2.85
5854 12625 9.884465 GTGCTCCATCATATTAGTTGAATTAAC 57.116 33.333 0.00 0.00 39.65 2.01
5855 12626 9.851686 AGTGCTCCATCATATTAGTTGAATTAA 57.148 29.630 0.00 0.00 0.00 1.40
5868 12639 9.875691 GTTGAATGTATATAGTGCTCCATCATA 57.124 33.333 0.00 0.00 0.00 2.15
5869 12640 8.377799 TGTTGAATGTATATAGTGCTCCATCAT 58.622 33.333 0.00 0.00 0.00 2.45
5870 12641 7.657354 GTGTTGAATGTATATAGTGCTCCATCA 59.343 37.037 0.00 0.00 0.00 3.07
5871 12642 7.657354 TGTGTTGAATGTATATAGTGCTCCATC 59.343 37.037 0.00 0.00 0.00 3.51
5872 12643 7.508687 TGTGTTGAATGTATATAGTGCTCCAT 58.491 34.615 0.00 0.00 0.00 3.41
5873 12644 6.883744 TGTGTTGAATGTATATAGTGCTCCA 58.116 36.000 0.00 0.00 0.00 3.86
5874 12645 7.786178 TTGTGTTGAATGTATATAGTGCTCC 57.214 36.000 0.00 0.00 0.00 4.70
5890 12661 9.509855 GTCACTGTAAACATTTAATTGTGTTGA 57.490 29.630 3.86 0.00 38.47 3.18
5891 12662 8.751335 GGTCACTGTAAACATTTAATTGTGTTG 58.249 33.333 3.86 0.00 38.47 3.33
5892 12663 7.923878 GGGTCACTGTAAACATTTAATTGTGTT 59.076 33.333 3.86 0.53 40.06 3.32
5893 12664 7.068839 TGGGTCACTGTAAACATTTAATTGTGT 59.931 33.333 3.86 1.49 0.00 3.72
5894 12665 7.429633 TGGGTCACTGTAAACATTTAATTGTG 58.570 34.615 3.86 0.00 0.00 3.33
5895 12666 7.589958 TGGGTCACTGTAAACATTTAATTGT 57.410 32.000 0.00 0.00 0.00 2.71
5896 12667 8.303156 TGATGGGTCACTGTAAACATTTAATTG 58.697 33.333 0.00 0.00 0.00 2.32
5897 12668 8.415950 TGATGGGTCACTGTAAACATTTAATT 57.584 30.769 0.00 0.00 0.00 1.40
5912 12683 7.968405 GTTAAATTAACTGATGTGATGGGTCAC 59.032 37.037 8.51 1.76 43.39 3.67
5913 12684 7.667635 TGTTAAATTAACTGATGTGATGGGTCA 59.332 33.333 15.80 0.00 39.38 4.02
5914 12685 8.050778 TGTTAAATTAACTGATGTGATGGGTC 57.949 34.615 15.80 0.00 39.38 4.46
5915 12686 8.593945 ATGTTAAATTAACTGATGTGATGGGT 57.406 30.769 15.80 0.00 39.38 4.51
5916 12687 7.857389 CGATGTTAAATTAACTGATGTGATGGG 59.143 37.037 15.80 0.00 39.38 4.00
5917 12688 8.611757 TCGATGTTAAATTAACTGATGTGATGG 58.388 33.333 15.80 2.67 39.38 3.51
5918 12689 9.642312 CTCGATGTTAAATTAACTGATGTGATG 57.358 33.333 15.80 0.00 39.38 3.07
5919 12690 8.830580 CCTCGATGTTAAATTAACTGATGTGAT 58.169 33.333 15.80 0.75 39.38 3.06
5920 12691 7.201609 GCCTCGATGTTAAATTAACTGATGTGA 60.202 37.037 15.80 5.83 39.38 3.58
5921 12692 6.907212 GCCTCGATGTTAAATTAACTGATGTG 59.093 38.462 15.80 5.64 39.38 3.21
5922 12693 6.038271 GGCCTCGATGTTAAATTAACTGATGT 59.962 38.462 15.80 0.00 39.38 3.06
5923 12694 6.038161 TGGCCTCGATGTTAAATTAACTGATG 59.962 38.462 15.80 9.57 39.38 3.07
5924 12695 6.038271 GTGGCCTCGATGTTAAATTAACTGAT 59.962 38.462 15.80 3.37 39.38 2.90
5925 12696 5.353123 GTGGCCTCGATGTTAAATTAACTGA 59.647 40.000 15.80 10.35 39.38 3.41
5926 12697 5.354234 AGTGGCCTCGATGTTAAATTAACTG 59.646 40.000 15.80 7.09 39.38 3.16
5927 12698 5.497474 AGTGGCCTCGATGTTAAATTAACT 58.503 37.500 15.80 3.12 39.38 2.24
5928 12699 5.813080 AGTGGCCTCGATGTTAAATTAAC 57.187 39.130 3.32 8.82 39.11 2.01
5929 12700 5.355910 GGAAGTGGCCTCGATGTTAAATTAA 59.644 40.000 3.32 0.00 0.00 1.40
5930 12701 4.879545 GGAAGTGGCCTCGATGTTAAATTA 59.120 41.667 3.32 0.00 0.00 1.40
5931 12702 3.694566 GGAAGTGGCCTCGATGTTAAATT 59.305 43.478 3.32 0.00 0.00 1.82
5932 12703 3.279434 GGAAGTGGCCTCGATGTTAAAT 58.721 45.455 3.32 0.00 0.00 1.40
5933 12704 2.617021 GGGAAGTGGCCTCGATGTTAAA 60.617 50.000 3.32 0.00 0.00 1.52
5934 12705 1.065709 GGGAAGTGGCCTCGATGTTAA 60.066 52.381 3.32 0.00 0.00 2.01
5935 12706 0.539986 GGGAAGTGGCCTCGATGTTA 59.460 55.000 3.32 0.00 0.00 2.41
5936 12707 1.299976 GGGAAGTGGCCTCGATGTT 59.700 57.895 3.32 0.00 0.00 2.71
5937 12708 1.274703 ATGGGAAGTGGCCTCGATGT 61.275 55.000 3.32 0.00 0.00 3.06
5938 12709 0.107017 AATGGGAAGTGGCCTCGATG 60.107 55.000 3.32 0.00 0.00 3.84
5939 12710 0.181350 GAATGGGAAGTGGCCTCGAT 59.819 55.000 3.32 0.00 0.00 3.59
5940 12711 1.602237 GAATGGGAAGTGGCCTCGA 59.398 57.895 3.32 0.00 0.00 4.04
5941 12712 1.452108 GGAATGGGAAGTGGCCTCG 60.452 63.158 3.32 0.00 0.00 4.63
5942 12713 1.452108 CGGAATGGGAAGTGGCCTC 60.452 63.158 3.32 0.00 0.00 4.70
5943 12714 2.198304 GACGGAATGGGAAGTGGCCT 62.198 60.000 3.32 0.00 0.00 5.19
5944 12715 1.749258 GACGGAATGGGAAGTGGCC 60.749 63.158 0.00 0.00 0.00 5.36
5945 12716 1.002624 TGACGGAATGGGAAGTGGC 60.003 57.895 0.00 0.00 0.00 5.01
5946 12717 0.676782 GGTGACGGAATGGGAAGTGG 60.677 60.000 0.00 0.00 0.00 4.00
5947 12718 0.676782 GGGTGACGGAATGGGAAGTG 60.677 60.000 0.00 0.00 0.00 3.16
5948 12719 1.131303 TGGGTGACGGAATGGGAAGT 61.131 55.000 0.00 0.00 0.00 3.01
5949 12720 0.255890 ATGGGTGACGGAATGGGAAG 59.744 55.000 0.00 0.00 0.00 3.46
5950 12721 0.254747 GATGGGTGACGGAATGGGAA 59.745 55.000 0.00 0.00 0.00 3.97
5951 12722 0.620410 AGATGGGTGACGGAATGGGA 60.620 55.000 0.00 0.00 0.00 4.37
5952 12723 0.464373 CAGATGGGTGACGGAATGGG 60.464 60.000 0.00 0.00 0.00 4.00
5953 12724 0.541392 TCAGATGGGTGACGGAATGG 59.459 55.000 0.00 0.00 0.00 3.16
5954 12725 2.158914 TCATCAGATGGGTGACGGAATG 60.159 50.000 10.67 0.00 0.00 2.67
5955 12726 2.118679 TCATCAGATGGGTGACGGAAT 58.881 47.619 10.67 0.00 0.00 3.01
5956 12727 1.207089 GTCATCAGATGGGTGACGGAA 59.793 52.381 10.67 0.00 33.73 4.30
5957 12728 0.824109 GTCATCAGATGGGTGACGGA 59.176 55.000 10.67 0.00 33.73 4.69
5958 12729 0.826715 AGTCATCAGATGGGTGACGG 59.173 55.000 10.67 0.00 45.17 4.79
5959 12730 2.690497 AGTAGTCATCAGATGGGTGACG 59.310 50.000 10.67 0.00 45.17 4.35
5960 12731 3.068873 GGAGTAGTCATCAGATGGGTGAC 59.931 52.174 10.67 2.24 41.88 3.67
5961 12732 3.300388 GGAGTAGTCATCAGATGGGTGA 58.700 50.000 10.67 0.00 0.00 4.02
5962 12733 3.033909 TGGAGTAGTCATCAGATGGGTG 58.966 50.000 10.67 0.00 0.00 4.61
5963 12734 3.052566 TCTGGAGTAGTCATCAGATGGGT 60.053 47.826 10.67 0.97 32.10 4.51
5964 12735 3.320541 GTCTGGAGTAGTCATCAGATGGG 59.679 52.174 10.67 0.00 38.34 4.00
5965 12736 4.214310 AGTCTGGAGTAGTCATCAGATGG 58.786 47.826 10.67 0.00 38.34 3.51
5966 12737 5.850557 AAGTCTGGAGTAGTCATCAGATG 57.149 43.478 3.71 3.71 38.34 2.90
5967 12738 5.534654 GCTAAGTCTGGAGTAGTCATCAGAT 59.465 44.000 9.04 0.00 38.34 2.90
5968 12739 4.884744 GCTAAGTCTGGAGTAGTCATCAGA 59.115 45.833 0.00 1.41 34.34 3.27
5969 12740 4.642437 TGCTAAGTCTGGAGTAGTCATCAG 59.358 45.833 0.00 0.00 0.00 2.90
5970 12741 4.399618 GTGCTAAGTCTGGAGTAGTCATCA 59.600 45.833 0.00 0.00 0.00 3.07
5971 12742 4.399618 TGTGCTAAGTCTGGAGTAGTCATC 59.600 45.833 0.00 0.00 0.00 2.92
5972 12743 4.158764 GTGTGCTAAGTCTGGAGTAGTCAT 59.841 45.833 0.00 0.00 0.00 3.06
5973 12744 3.506455 GTGTGCTAAGTCTGGAGTAGTCA 59.494 47.826 0.00 0.00 0.00 3.41
5974 12745 3.759618 AGTGTGCTAAGTCTGGAGTAGTC 59.240 47.826 0.00 0.00 0.00 2.59
5975 12746 3.768878 AGTGTGCTAAGTCTGGAGTAGT 58.231 45.455 0.00 0.00 0.00 2.73
5976 12747 4.792521 AAGTGTGCTAAGTCTGGAGTAG 57.207 45.455 0.00 0.00 0.00 2.57
5977 12748 5.773680 AGTTAAGTGTGCTAAGTCTGGAGTA 59.226 40.000 0.00 0.00 0.00 2.59
5978 12749 4.589374 AGTTAAGTGTGCTAAGTCTGGAGT 59.411 41.667 0.00 0.00 0.00 3.85
5979 12750 5.140747 AGTTAAGTGTGCTAAGTCTGGAG 57.859 43.478 0.00 0.00 0.00 3.86
5980 12751 5.297547 CAAGTTAAGTGTGCTAAGTCTGGA 58.702 41.667 0.00 0.00 0.00 3.86
5981 12752 4.452455 CCAAGTTAAGTGTGCTAAGTCTGG 59.548 45.833 0.00 0.00 0.00 3.86
5982 12753 4.452455 CCCAAGTTAAGTGTGCTAAGTCTG 59.548 45.833 0.00 0.00 0.00 3.51
5983 12754 4.347000 TCCCAAGTTAAGTGTGCTAAGTCT 59.653 41.667 0.00 0.00 0.00 3.24
5984 12755 4.638304 TCCCAAGTTAAGTGTGCTAAGTC 58.362 43.478 0.00 0.00 0.00 3.01
5985 12756 4.102681 ACTCCCAAGTTAAGTGTGCTAAGT 59.897 41.667 0.00 0.00 28.74 2.24
5986 12757 4.642429 ACTCCCAAGTTAAGTGTGCTAAG 58.358 43.478 0.00 0.00 28.74 2.18
5987 12758 4.699925 ACTCCCAAGTTAAGTGTGCTAA 57.300 40.909 0.00 0.00 28.74 3.09
5988 12759 4.347000 AGAACTCCCAAGTTAAGTGTGCTA 59.653 41.667 0.00 0.00 45.80 3.49
5989 12760 3.136626 AGAACTCCCAAGTTAAGTGTGCT 59.863 43.478 0.00 0.00 45.80 4.40
5990 12761 3.251004 CAGAACTCCCAAGTTAAGTGTGC 59.749 47.826 0.00 0.00 45.80 4.57
5991 12762 4.451900 ACAGAACTCCCAAGTTAAGTGTG 58.548 43.478 0.00 0.00 45.80 3.82
5992 12763 4.772886 ACAGAACTCCCAAGTTAAGTGT 57.227 40.909 0.00 0.00 45.80 3.55
5993 12764 6.522054 TCTAACAGAACTCCCAAGTTAAGTG 58.478 40.000 0.00 0.00 45.80 3.16
5994 12765 6.742559 TCTAACAGAACTCCCAAGTTAAGT 57.257 37.500 0.00 0.00 45.80 2.24
5995 12766 7.386851 TCATCTAACAGAACTCCCAAGTTAAG 58.613 38.462 0.00 0.00 45.80 1.85
5996 12767 7.311092 TCATCTAACAGAACTCCCAAGTTAA 57.689 36.000 0.00 0.00 45.80 2.01
5997 12768 6.574465 GCTCATCTAACAGAACTCCCAAGTTA 60.574 42.308 0.00 0.00 45.80 2.24
5999 12770 4.323104 GCTCATCTAACAGAACTCCCAAGT 60.323 45.833 0.00 0.00 37.32 3.16
6000 12771 4.081198 AGCTCATCTAACAGAACTCCCAAG 60.081 45.833 0.00 0.00 0.00 3.61
6001 12772 3.840666 AGCTCATCTAACAGAACTCCCAA 59.159 43.478 0.00 0.00 0.00 4.12
6002 12773 3.445008 AGCTCATCTAACAGAACTCCCA 58.555 45.455 0.00 0.00 0.00 4.37
6003 12774 5.563867 CGATAGCTCATCTAACAGAACTCCC 60.564 48.000 0.00 0.00 0.00 4.30
6004 12775 5.457140 CGATAGCTCATCTAACAGAACTCC 58.543 45.833 0.00 0.00 0.00 3.85
6005 12776 5.009210 ACCGATAGCTCATCTAACAGAACTC 59.991 44.000 0.00 0.00 0.00 3.01
6006 12777 4.890581 ACCGATAGCTCATCTAACAGAACT 59.109 41.667 0.00 0.00 0.00 3.01
6007 12778 5.189659 ACCGATAGCTCATCTAACAGAAC 57.810 43.478 0.00 0.00 0.00 3.01
6008 12779 5.473846 CCTACCGATAGCTCATCTAACAGAA 59.526 44.000 0.00 0.00 0.00 3.02
6009 12780 5.004448 CCTACCGATAGCTCATCTAACAGA 58.996 45.833 0.00 0.00 0.00 3.41
6010 12781 4.156922 CCCTACCGATAGCTCATCTAACAG 59.843 50.000 0.00 0.00 0.00 3.16
6011 12782 4.079970 CCCTACCGATAGCTCATCTAACA 58.920 47.826 0.00 0.00 0.00 2.41
6012 12783 4.333690 TCCCTACCGATAGCTCATCTAAC 58.666 47.826 0.00 0.00 0.00 2.34
6013 12784 4.652679 TCCCTACCGATAGCTCATCTAA 57.347 45.455 0.00 0.00 0.00 2.10
6014 12785 4.590918 CTTCCCTACCGATAGCTCATCTA 58.409 47.826 0.00 0.00 0.00 1.98
6015 12786 3.426615 CTTCCCTACCGATAGCTCATCT 58.573 50.000 0.00 0.00 0.00 2.90
6016 12787 2.094442 GCTTCCCTACCGATAGCTCATC 60.094 54.545 0.00 0.00 0.00 2.92
6017 12788 1.896465 GCTTCCCTACCGATAGCTCAT 59.104 52.381 0.00 0.00 0.00 2.90
6018 12789 1.133450 AGCTTCCCTACCGATAGCTCA 60.133 52.381 0.00 0.00 37.64 4.26
6019 12790 1.271102 CAGCTTCCCTACCGATAGCTC 59.729 57.143 0.00 0.00 40.01 4.09
6020 12791 1.333177 CAGCTTCCCTACCGATAGCT 58.667 55.000 0.00 0.00 42.56 3.32
6021 12792 0.318762 CCAGCTTCCCTACCGATAGC 59.681 60.000 0.00 0.00 0.00 2.97
6022 12793 1.614413 GACCAGCTTCCCTACCGATAG 59.386 57.143 0.00 0.00 0.00 2.08
6023 12794 1.700955 GACCAGCTTCCCTACCGATA 58.299 55.000 0.00 0.00 0.00 2.92
6024 12795 1.049289 GGACCAGCTTCCCTACCGAT 61.049 60.000 0.00 0.00 0.00 4.18
6025 12796 1.684734 GGACCAGCTTCCCTACCGA 60.685 63.158 0.00 0.00 0.00 4.69
6026 12797 1.265454 AAGGACCAGCTTCCCTACCG 61.265 60.000 0.53 0.00 36.12 4.02
6027 12798 0.253327 CAAGGACCAGCTTCCCTACC 59.747 60.000 0.53 0.00 36.12 3.18
6028 12799 0.393132 GCAAGGACCAGCTTCCCTAC 60.393 60.000 0.53 0.00 36.12 3.18
6029 12800 1.899437 CGCAAGGACCAGCTTCCCTA 61.899 60.000 0.53 0.00 36.12 3.53
6030 12801 2.759795 GCAAGGACCAGCTTCCCT 59.240 61.111 0.53 0.00 36.12 4.20
6031 12802 2.747855 CGCAAGGACCAGCTTCCC 60.748 66.667 0.53 0.00 36.12 3.97
6032 12803 2.032681 ACGCAAGGACCAGCTTCC 59.967 61.111 7.27 0.00 46.39 3.46
6033 12804 1.004440 AGACGCAAGGACCAGCTTC 60.004 57.895 7.17 7.17 46.39 3.86
6034 12805 1.302033 CAGACGCAAGGACCAGCTT 60.302 57.895 7.27 0.00 46.39 3.74
6035 12806 1.185618 TACAGACGCAAGGACCAGCT 61.186 55.000 7.27 0.00 46.39 4.24
6036 12807 0.737715 CTACAGACGCAAGGACCAGC 60.738 60.000 0.00 0.00 46.39 4.85
6037 12808 0.108615 CCTACAGACGCAAGGACCAG 60.109 60.000 0.00 0.00 46.39 4.00
6038 12809 0.541063 TCCTACAGACGCAAGGACCA 60.541 55.000 0.00 0.00 46.39 4.02
6039 12810 0.824759 ATCCTACAGACGCAAGGACC 59.175 55.000 0.00 0.00 42.08 4.46
6040 12811 1.202428 GGATCCTACAGACGCAAGGAC 60.202 57.143 3.84 0.00 42.08 3.85
6041 12812 1.112113 GGATCCTACAGACGCAAGGA 58.888 55.000 3.84 0.00 43.38 3.36
6042 12813 0.105039 GGGATCCTACAGACGCAAGG 59.895 60.000 12.58 0.00 46.39 3.61
6043 12814 1.067821 GAGGGATCCTACAGACGCAAG 59.932 57.143 12.58 0.00 37.41 4.01
6044 12815 1.112113 GAGGGATCCTACAGACGCAA 58.888 55.000 12.58 0.00 31.76 4.85
6045 12816 0.259065 AGAGGGATCCTACAGACGCA 59.741 55.000 12.58 0.00 31.76 5.24
6046 12817 1.404843 AAGAGGGATCCTACAGACGC 58.595 55.000 12.58 0.00 31.76 5.19
6047 12818 2.482142 GCAAAGAGGGATCCTACAGACG 60.482 54.545 12.58 0.00 31.76 4.18
6048 12819 2.501723 TGCAAAGAGGGATCCTACAGAC 59.498 50.000 12.58 0.00 31.76 3.51
6049 12820 2.501723 GTGCAAAGAGGGATCCTACAGA 59.498 50.000 12.58 0.00 31.76 3.41
6050 12821 2.503356 AGTGCAAAGAGGGATCCTACAG 59.497 50.000 12.58 0.00 31.76 2.74
6051 12822 2.551270 AGTGCAAAGAGGGATCCTACA 58.449 47.619 12.58 0.00 31.76 2.74
6052 12823 3.451178 TGTAGTGCAAAGAGGGATCCTAC 59.549 47.826 12.58 6.17 31.76 3.18
6053 12824 3.719871 TGTAGTGCAAAGAGGGATCCTA 58.280 45.455 12.58 0.00 31.76 2.94
6054 12825 2.551270 TGTAGTGCAAAGAGGGATCCT 58.449 47.619 12.58 0.00 36.03 3.24
6055 12826 3.118261 TCATGTAGTGCAAAGAGGGATCC 60.118 47.826 1.92 1.92 0.00 3.36
6056 12827 4.142609 TCATGTAGTGCAAAGAGGGATC 57.857 45.455 0.00 0.00 0.00 3.36
6057 12828 4.574674 TTCATGTAGTGCAAAGAGGGAT 57.425 40.909 0.00 0.00 0.00 3.85
6058 12829 4.365514 TTTCATGTAGTGCAAAGAGGGA 57.634 40.909 0.00 0.00 0.00 4.20
6059 12830 6.319658 ACATATTTCATGTAGTGCAAAGAGGG 59.680 38.462 0.00 0.00 0.00 4.30
6060 12831 7.066163 TGACATATTTCATGTAGTGCAAAGAGG 59.934 37.037 0.00 0.00 31.52 3.69
6061 12832 7.977904 TGACATATTTCATGTAGTGCAAAGAG 58.022 34.615 0.00 0.00 31.52 2.85
6062 12833 7.920160 TGACATATTTCATGTAGTGCAAAGA 57.080 32.000 0.00 0.00 31.52 2.52
6063 12834 8.239314 AGTTGACATATTTCATGTAGTGCAAAG 58.761 33.333 0.00 0.00 31.52 2.77
6064 12835 8.109705 AGTTGACATATTTCATGTAGTGCAAA 57.890 30.769 0.00 0.00 31.52 3.68
6065 12836 7.686438 AGTTGACATATTTCATGTAGTGCAA 57.314 32.000 0.00 0.00 31.52 4.08
6066 12837 7.174772 ACAAGTTGACATATTTCATGTAGTGCA 59.825 33.333 10.54 0.00 31.52 4.57
6204 12975 2.434428 ACGTCTACGACCTTCTCACAT 58.566 47.619 9.86 0.00 43.02 3.21
6281 13052 2.024918 CCATGTTGGATGCCTACGC 58.975 57.895 0.00 0.00 40.96 4.42
6296 13067 1.304630 TGCCACATCAGCTTGCCAT 60.305 52.632 0.00 0.00 0.00 4.40
6353 13124 8.458843 CAGAGAAACAATAATAAATGGGTTCGT 58.541 33.333 0.00 0.00 0.00 3.85
6357 13128 8.877864 TGACAGAGAAACAATAATAAATGGGT 57.122 30.769 0.00 0.00 0.00 4.51
6375 13146 0.179062 GGCCCATGTAGCTGACAGAG 60.179 60.000 6.65 0.00 42.79 3.35
6398 13169 8.650490 AGAAAATAAAAAGGCTGAATTCTTGGA 58.350 29.630 7.05 0.00 0.00 3.53
6433 13205 6.684362 GCCCAAAAACAAAATGTACAGTAGGT 60.684 38.462 0.33 0.00 0.00 3.08
6555 13330 6.349611 GCATGCTTGTTTGAATTTCCTCTCTA 60.350 38.462 11.37 0.00 0.00 2.43
6859 13634 1.655114 AAGCAACACTGGGGGAAGGT 61.655 55.000 0.00 0.00 0.00 3.50
6870 13645 1.440938 TACGGCACACCAAGCAACAC 61.441 55.000 0.00 0.00 34.57 3.32
6888 13663 2.496070 GTGTGCAGGGTGACTAGTGATA 59.504 50.000 0.00 0.00 0.00 2.15
7017 13969 5.488341 GCCAAGTACACCAAGAAGATCTAA 58.512 41.667 0.00 0.00 0.00 2.10
7019 13971 3.307762 GGCCAAGTACACCAAGAAGATCT 60.308 47.826 0.00 0.00 0.00 2.75
7037 13989 1.077930 GCTGAGATGCTCAAGGCCA 60.078 57.895 5.01 0.00 40.18 5.36
7070 14022 9.225436 GTTTGAATGAATAGAAGGAGAAGTCTT 57.775 33.333 0.00 0.00 0.00 3.01
7235 14188 6.486993 ACGACATCTTACATAGCTACTCATCA 59.513 38.462 0.00 0.00 0.00 3.07
7247 14200 3.243569 GGAGCTAGCACGACATCTTACAT 60.244 47.826 18.83 0.00 0.00 2.29
7376 14329 2.658325 CGCTTCACATTTTAAGCAGCAC 59.342 45.455 7.71 0.00 46.74 4.40
7492 14446 2.093783 GCGTACACTTTGTATGGCTGAC 59.906 50.000 7.48 0.00 39.58 3.51
7526 14480 8.201464 TGTCATCTGTTCTTTGTTCTTACTACA 58.799 33.333 0.00 0.00 0.00 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.