Multiple sequence alignment - TraesCS7B01G004000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G004000 chr7B 100.000 2240 0 0 1 2240 1696699 1698938 0.000000e+00 4137
1 TraesCS7B01G004000 chr7B 92.899 690 41 3 1419 2108 1697909 1697228 0.000000e+00 996
2 TraesCS7B01G004000 chr7B 92.899 690 41 3 530 1211 1698806 1698117 0.000000e+00 996
3 TraesCS7B01G004000 chr7B 86.842 380 40 7 879 1249 2328764 2328386 1.240000e-112 416
4 TraesCS7B01G004000 chr7B 88.596 342 37 2 1419 1759 2328424 2328764 4.450000e-112 414
5 TraesCS7B01G004000 chr7B 88.304 342 38 2 1421 1761 2335422 2335082 2.070000e-110 409
6 TraesCS7B01G004000 chr7B 84.817 382 48 8 878 1250 2335083 2335463 2.100000e-100 375
7 TraesCS7B01G004000 chr3B 89.674 552 45 6 1 549 150258857 150259399 0.000000e+00 693
8 TraesCS7B01G004000 chr3B 77.419 651 116 22 1 640 143551912 143552542 2.120000e-95 359
9 TraesCS7B01G004000 chr3B 79.420 345 52 11 2 334 775733468 775733805 2.240000e-55 226
10 TraesCS7B01G004000 chr7A 82.097 782 93 28 1 739 126669186 126669963 1.890000e-175 625
11 TraesCS7B01G004000 chr7A 88.921 343 38 0 1419 1761 64209627 64209969 7.400000e-115 424
12 TraesCS7B01G004000 chr7A 85.827 381 44 9 878 1249 64294268 64294647 1.610000e-106 396
13 TraesCS7B01G004000 chr7A 95.588 136 6 0 2105 2240 17876181 17876046 3.750000e-53 219
14 TraesCS7B01G004000 chr7A 87.770 139 17 0 1917 2055 711360669 711360531 1.780000e-36 163
15 TraesCS7B01G004000 chr5B 88.486 469 51 3 183 651 536871392 536870927 4.180000e-157 564
16 TraesCS7B01G004000 chr5B 78.368 772 115 39 1 739 47566435 47567187 9.430000e-124 453
17 TraesCS7B01G004000 chr5B 79.556 450 75 6 307 739 613268899 613269348 2.790000e-79 305
18 TraesCS7B01G004000 chr5B 90.909 99 9 0 643 741 536870860 536870762 1.400000e-27 134
19 TraesCS7B01G004000 chr5D 80.336 773 90 34 1 741 24321383 24322125 1.520000e-146 529
20 TraesCS7B01G004000 chr5D 90.441 136 13 0 2105 2240 399812434 399812569 1.770000e-41 180
21 TraesCS7B01G004000 chr5D 84.906 106 16 0 1899 2004 42979300 42979405 8.460000e-20 108
22 TraesCS7B01G004000 chr7D 84.170 518 57 5 243 740 541381659 541381147 1.560000e-131 479
23 TraesCS7B01G004000 chr3D 85.216 487 48 11 269 732 143968240 143967755 1.560000e-131 479
24 TraesCS7B01G004000 chr3D 84.545 220 16 7 1906 2108 143967755 143967973 3.770000e-48 202
25 TraesCS7B01G004000 chr2D 79.398 665 107 25 1 650 35390279 35389630 2.040000e-120 442
26 TraesCS7B01G004000 chr2D 78.939 660 116 19 1 650 35347048 35346402 5.720000e-116 427
27 TraesCS7B01G004000 chr2D 85.470 117 17 0 1986 2102 81458600 81458716 3.020000e-24 122
28 TraesCS7B01G004000 chr6D 89.796 343 35 0 1419 1761 62324245 62324587 7.340000e-120 440
29 TraesCS7B01G004000 chr6D 89.213 343 37 0 1419 1761 62424055 62424397 1.590000e-116 429
30 TraesCS7B01G004000 chr6D 86.822 387 43 3 878 1256 62324586 62324200 2.060000e-115 425
31 TraesCS7B01G004000 chr6D 86.528 386 44 3 878 1255 62424396 62424011 3.440000e-113 418
32 TraesCS7B01G004000 chr6B 89.796 343 35 0 1419 1761 136100150 136100492 7.340000e-120 440
33 TraesCS7B01G004000 chr6B 89.213 343 37 0 1419 1761 135995418 135995760 1.590000e-116 429
34 TraesCS7B01G004000 chr6B 86.528 386 44 3 878 1255 136100491 136100106 3.440000e-113 418
35 TraesCS7B01G004000 chr6A 89.213 343 37 0 1419 1761 79813896 79814238 1.590000e-116 429
36 TraesCS7B01G004000 chr6A 85.302 381 48 3 878 1250 79702956 79702576 9.700000e-104 387
37 TraesCS7B01G004000 chr1D 77.705 767 121 26 1 741 33993866 33993124 7.400000e-115 424
38 TraesCS7B01G004000 chr1D 77.297 555 80 24 206 739 80975171 80974642 3.640000e-73 285
39 TraesCS7B01G004000 chr1D 89.305 187 20 0 1899 2085 473403480 473403294 3.720000e-58 235
40 TraesCS7B01G004000 chr1D 97.059 136 4 0 2105 2240 374456849 374456714 1.730000e-56 230
41 TraesCS7B01G004000 chr1D 82.890 263 28 4 477 739 473403235 473403480 1.040000e-53 220
42 TraesCS7B01G004000 chr4A 84.278 388 51 4 878 1255 677730849 677730462 9.770000e-99 370
43 TraesCS7B01G004000 chr1A 78.546 564 85 10 198 739 588752811 588752262 2.760000e-89 339
44 TraesCS7B01G004000 chr1A 89.706 136 14 0 2105 2240 557963153 557963018 8.220000e-40 174
45 TraesCS7B01G004000 chr4B 82.029 345 49 10 1 340 25056686 25056350 4.710000e-72 281
46 TraesCS7B01G004000 chr1B 81.931 321 40 10 1 312 76021724 76022035 2.850000e-64 255
47 TraesCS7B01G004000 chr1B 93.284 134 9 0 2107 2240 666569970 666570103 4.880000e-47 198
48 TraesCS7B01G004000 chr1B 88.462 156 17 1 1 156 76106063 76106217 1.060000e-43 187
49 TraesCS7B01G004000 chr4D 81.000 300 42 10 1 298 409316069 409316355 8.050000e-55 224


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G004000 chr7B 1696699 1698938 2239 False 4137 4137 100.0000 1 2240 1 chr7B.!!$F1 2239
1 TraesCS7B01G004000 chr7B 1697228 1698806 1578 True 996 996 92.8990 530 2108 2 chr7B.!!$R3 1578
2 TraesCS7B01G004000 chr3B 150258857 150259399 542 False 693 693 89.6740 1 549 1 chr3B.!!$F2 548
3 TraesCS7B01G004000 chr3B 143551912 143552542 630 False 359 359 77.4190 1 640 1 chr3B.!!$F1 639
4 TraesCS7B01G004000 chr7A 126669186 126669963 777 False 625 625 82.0970 1 739 1 chr7A.!!$F3 738
5 TraesCS7B01G004000 chr5B 47566435 47567187 752 False 453 453 78.3680 1 739 1 chr5B.!!$F1 738
6 TraesCS7B01G004000 chr5B 536870762 536871392 630 True 349 564 89.6975 183 741 2 chr5B.!!$R1 558
7 TraesCS7B01G004000 chr5D 24321383 24322125 742 False 529 529 80.3360 1 741 1 chr5D.!!$F1 740
8 TraesCS7B01G004000 chr7D 541381147 541381659 512 True 479 479 84.1700 243 740 1 chr7D.!!$R1 497
9 TraesCS7B01G004000 chr2D 35389630 35390279 649 True 442 442 79.3980 1 650 1 chr2D.!!$R2 649
10 TraesCS7B01G004000 chr2D 35346402 35347048 646 True 427 427 78.9390 1 650 1 chr2D.!!$R1 649
11 TraesCS7B01G004000 chr1D 33993124 33993866 742 True 424 424 77.7050 1 741 1 chr1D.!!$R1 740
12 TraesCS7B01G004000 chr1D 80974642 80975171 529 True 285 285 77.2970 206 739 1 chr1D.!!$R2 533
13 TraesCS7B01G004000 chr1A 588752262 588752811 549 True 339 339 78.5460 198 739 1 chr1A.!!$R2 541

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
873 1088 0.245539 CTGATTTGGTGGGCAAGCTG 59.754 55.0 0.0 0.0 0.0 4.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2161 2563 0.033109 ATTTTGGGCTAGCCTCCACC 60.033 55.0 32.18 16.31 36.1 4.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 1.837051 ACTCCGGAGAAGTGTGCCA 60.837 57.895 37.69 0.00 0.00 4.92
45 46 2.564553 TTTGCAACCGCCACAACACC 62.565 55.000 0.00 0.00 37.32 4.16
46 47 4.622456 GCAACCGCCACAACACCG 62.622 66.667 0.00 0.00 0.00 4.94
56 59 1.881252 ACAACACCGCTGTCGACAC 60.881 57.895 15.76 10.87 38.10 3.67
58 61 1.153529 AACACCGCTGTCGACACAA 60.154 52.632 15.76 0.00 38.10 3.33
109 112 7.565680 AGGACCTATATTCAAAAGAACACGAT 58.434 34.615 0.00 0.00 0.00 3.73
114 117 4.789012 ATTCAAAAGAACACGATGGCAT 57.211 36.364 0.00 0.00 0.00 4.40
334 403 1.666011 CCATCGGCATAGCTACGGT 59.334 57.895 0.00 0.00 0.00 4.83
370 442 2.809174 TGCGTCGCGAATCAGTGG 60.809 61.111 12.06 0.00 0.00 4.00
412 524 3.534160 CGTCGGCATATACGGTGC 58.466 61.111 0.00 0.00 41.78 5.01
456 577 3.826221 GCATTCGTGCCTATGCCA 58.174 55.556 0.00 0.00 40.93 4.92
515 636 3.067480 TTAGCGGCCCGTTACGAGG 62.067 63.158 6.24 7.13 0.00 4.63
540 661 2.674754 CCGGGCCCACAAGTATGT 59.325 61.111 24.92 0.00 41.61 2.29
587 708 1.226888 GTCGGCATGGTCGTACCTC 60.227 63.158 0.00 0.00 39.58 3.85
611 732 2.288457 CCGATGGCAGTTCTATGACGAT 60.288 50.000 0.00 0.00 0.00 3.73
720 935 3.309506 TTTCGGCCGTCGGGGTAA 61.310 61.111 27.15 7.12 39.77 2.85
723 938 3.534056 CGGCCGTCGGGGTAATCT 61.534 66.667 19.50 0.00 38.44 2.40
755 970 5.564848 CGGTAGTGAAAGTGACATCTCTTGA 60.565 44.000 0.00 0.00 31.00 3.02
758 973 5.674525 AGTGAAAGTGACATCTCTTGACAA 58.325 37.500 0.00 0.00 31.86 3.18
762 977 5.368256 AAGTGACATCTCTTGACAATTGC 57.632 39.130 5.05 0.00 37.03 3.56
773 988 2.756829 TGACAATTGCGAGAAACGGTA 58.243 42.857 5.05 0.00 42.83 4.02
775 990 3.124466 TGACAATTGCGAGAAACGGTATG 59.876 43.478 5.05 0.00 42.83 2.39
782 997 1.135603 CGAGAAACGGTATGTCGTCCA 60.136 52.381 0.00 0.00 43.07 4.02
803 1018 5.124936 TCCAATCTCATCTGCAAACATCAAG 59.875 40.000 0.00 0.00 0.00 3.02
835 1050 4.706842 TGAAGGGGAAAGGAGTATATGC 57.293 45.455 0.00 0.00 0.00 3.14
873 1088 0.245539 CTGATTTGGTGGGCAAGCTG 59.754 55.000 0.00 0.00 0.00 4.24
876 1091 1.187567 ATTTGGTGGGCAAGCTGGTC 61.188 55.000 0.00 0.00 0.00 4.02
971 1194 4.904590 TGGGGTGTTGTTGGCGGG 62.905 66.667 0.00 0.00 0.00 6.13
1031 1254 3.485431 CGAGCTGCTCCGCAACTG 61.485 66.667 22.97 4.17 34.98 3.16
1107 1330 2.660064 CGTTGAGTGGAGGGAGGGG 61.660 68.421 0.00 0.00 0.00 4.79
1111 1334 4.787280 AGTGGAGGGAGGGGAGCG 62.787 72.222 0.00 0.00 0.00 5.03
1145 1368 3.195698 GGTGGCGCTAAAGCTCGG 61.196 66.667 7.64 0.00 39.32 4.63
1211 1434 2.443958 TCCGTCAGAGATGAGGACAT 57.556 50.000 0.00 0.00 39.67 3.06
1223 1625 2.783135 TGAGGACATCAAGGAGTTTGC 58.217 47.619 0.00 0.00 36.70 3.68
1226 1628 1.610624 GGACATCAAGGAGTTTGCCGA 60.611 52.381 0.00 0.00 36.70 5.54
1227 1629 1.734465 GACATCAAGGAGTTTGCCGAG 59.266 52.381 0.00 0.00 36.70 4.63
1230 1632 1.878953 TCAAGGAGTTTGCCGAGAAC 58.121 50.000 0.00 0.00 36.70 3.01
1234 1636 0.321996 GGAGTTTGCCGAGAACCTCT 59.678 55.000 0.00 0.00 0.00 3.69
1236 1638 2.070028 GAGTTTGCCGAGAACCTCTTC 58.930 52.381 0.00 0.00 0.00 2.87
1237 1639 1.694696 AGTTTGCCGAGAACCTCTTCT 59.305 47.619 0.00 0.00 39.64 2.85
1239 1641 3.323979 AGTTTGCCGAGAACCTCTTCTAA 59.676 43.478 0.00 0.00 36.82 2.10
1240 1642 4.020128 AGTTTGCCGAGAACCTCTTCTAAT 60.020 41.667 0.00 0.00 36.82 1.73
1241 1643 3.802948 TGCCGAGAACCTCTTCTAATC 57.197 47.619 0.00 0.00 36.82 1.75
1242 1644 3.096852 TGCCGAGAACCTCTTCTAATCA 58.903 45.455 0.00 0.00 36.82 2.57
1243 1645 3.513912 TGCCGAGAACCTCTTCTAATCAA 59.486 43.478 0.00 0.00 36.82 2.57
1244 1646 3.866327 GCCGAGAACCTCTTCTAATCAAC 59.134 47.826 0.00 0.00 36.82 3.18
1245 1647 4.434520 CCGAGAACCTCTTCTAATCAACC 58.565 47.826 0.00 0.00 36.82 3.77
1246 1648 4.434520 CGAGAACCTCTTCTAATCAACCC 58.565 47.826 0.00 0.00 36.82 4.11
1247 1649 4.081642 CGAGAACCTCTTCTAATCAACCCA 60.082 45.833 0.00 0.00 36.82 4.51
1248 1650 5.167303 AGAACCTCTTCTAATCAACCCAC 57.833 43.478 0.00 0.00 34.74 4.61
1249 1651 4.846940 AGAACCTCTTCTAATCAACCCACT 59.153 41.667 0.00 0.00 34.74 4.00
1250 1652 4.559862 ACCTCTTCTAATCAACCCACTG 57.440 45.455 0.00 0.00 0.00 3.66
1251 1653 4.168101 ACCTCTTCTAATCAACCCACTGA 58.832 43.478 0.00 0.00 0.00 3.41
1252 1654 4.020128 ACCTCTTCTAATCAACCCACTGAC 60.020 45.833 0.00 0.00 0.00 3.51
1253 1655 4.223923 CCTCTTCTAATCAACCCACTGACT 59.776 45.833 0.00 0.00 0.00 3.41
1254 1656 5.407407 TCTTCTAATCAACCCACTGACTC 57.593 43.478 0.00 0.00 0.00 3.36
1255 1657 5.087323 TCTTCTAATCAACCCACTGACTCT 58.913 41.667 0.00 0.00 0.00 3.24
1256 1658 6.253758 TCTTCTAATCAACCCACTGACTCTA 58.746 40.000 0.00 0.00 0.00 2.43
1257 1659 6.378564 TCTTCTAATCAACCCACTGACTCTAG 59.621 42.308 0.00 0.00 0.00 2.43
1258 1660 5.827756 TCTAATCAACCCACTGACTCTAGA 58.172 41.667 0.00 0.00 0.00 2.43
1259 1661 6.253758 TCTAATCAACCCACTGACTCTAGAA 58.746 40.000 0.00 0.00 0.00 2.10
1260 1662 6.897966 TCTAATCAACCCACTGACTCTAGAAT 59.102 38.462 0.00 0.00 0.00 2.40
1261 1663 8.059461 TCTAATCAACCCACTGACTCTAGAATA 58.941 37.037 0.00 0.00 0.00 1.75
1262 1664 6.723298 ATCAACCCACTGACTCTAGAATAG 57.277 41.667 0.00 0.00 41.04 1.73
1263 1665 4.402793 TCAACCCACTGACTCTAGAATAGC 59.597 45.833 0.00 0.00 38.99 2.97
1264 1666 4.258457 ACCCACTGACTCTAGAATAGCT 57.742 45.455 0.00 0.00 38.99 3.32
1265 1667 4.211920 ACCCACTGACTCTAGAATAGCTC 58.788 47.826 0.00 0.00 38.99 4.09
1266 1668 4.211125 CCCACTGACTCTAGAATAGCTCA 58.789 47.826 0.00 0.00 38.99 4.26
1267 1669 4.832266 CCCACTGACTCTAGAATAGCTCAT 59.168 45.833 0.00 0.00 38.99 2.90
1268 1670 5.304101 CCCACTGACTCTAGAATAGCTCATT 59.696 44.000 0.00 0.00 38.99 2.57
1269 1671 6.215121 CCACTGACTCTAGAATAGCTCATTG 58.785 44.000 0.00 0.00 38.99 2.82
1270 1672 6.040278 CCACTGACTCTAGAATAGCTCATTGA 59.960 42.308 0.00 0.00 38.99 2.57
1271 1673 7.255906 CCACTGACTCTAGAATAGCTCATTGAT 60.256 40.741 0.00 0.00 38.99 2.57
1272 1674 7.595875 CACTGACTCTAGAATAGCTCATTGATG 59.404 40.741 0.00 0.00 38.99 3.07
1273 1675 7.505248 ACTGACTCTAGAATAGCTCATTGATGA 59.495 37.037 0.00 0.00 38.99 2.92
1274 1676 8.242729 TGACTCTAGAATAGCTCATTGATGAA 57.757 34.615 0.00 0.00 38.99 2.57
1275 1677 8.868103 TGACTCTAGAATAGCTCATTGATGAAT 58.132 33.333 0.00 0.00 38.99 2.57
1276 1678 9.709495 GACTCTAGAATAGCTCATTGATGAATT 57.291 33.333 0.00 0.00 38.99 2.17
1277 1679 9.709495 ACTCTAGAATAGCTCATTGATGAATTC 57.291 33.333 0.00 0.00 38.99 2.17
1278 1680 9.708092 CTCTAGAATAGCTCATTGATGAATTCA 57.292 33.333 11.26 11.26 38.99 2.57
1279 1681 9.486497 TCTAGAATAGCTCATTGATGAATTCAC 57.514 33.333 11.07 5.73 38.99 3.18
1280 1682 7.187244 AGAATAGCTCATTGATGAATTCACG 57.813 36.000 11.07 0.00 35.52 4.35
1281 1683 5.936686 ATAGCTCATTGATGAATTCACGG 57.063 39.130 11.07 0.00 36.18 4.94
1282 1684 3.614092 AGCTCATTGATGAATTCACGGT 58.386 40.909 11.07 0.00 36.18 4.83
1283 1685 4.012374 AGCTCATTGATGAATTCACGGTT 58.988 39.130 11.07 0.00 36.18 4.44
1284 1686 4.095483 AGCTCATTGATGAATTCACGGTTC 59.905 41.667 11.07 5.03 36.18 3.62
1285 1687 4.731773 GCTCATTGATGAATTCACGGTTCC 60.732 45.833 11.07 0.00 36.18 3.62
1286 1688 4.588899 TCATTGATGAATTCACGGTTCCT 58.411 39.130 11.07 0.00 32.84 3.36
1287 1689 5.009631 TCATTGATGAATTCACGGTTCCTT 58.990 37.500 11.07 0.00 32.84 3.36
1288 1690 4.764679 TTGATGAATTCACGGTTCCTTG 57.235 40.909 11.07 0.00 32.84 3.61
1289 1691 3.750371 TGATGAATTCACGGTTCCTTGT 58.250 40.909 11.07 0.00 0.00 3.16
1290 1692 3.501828 TGATGAATTCACGGTTCCTTGTG 59.498 43.478 11.07 0.00 37.44 3.33
1291 1693 2.226330 TGAATTCACGGTTCCTTGTGG 58.774 47.619 3.38 0.00 36.74 4.17
1292 1694 2.227194 GAATTCACGGTTCCTTGTGGT 58.773 47.619 0.00 0.00 36.74 4.16
1293 1695 1.892209 ATTCACGGTTCCTTGTGGTC 58.108 50.000 0.00 0.00 36.74 4.02
1294 1696 0.531090 TTCACGGTTCCTTGTGGTCG 60.531 55.000 0.00 0.00 36.74 4.79
1295 1697 1.227438 CACGGTTCCTTGTGGTCGT 60.227 57.895 0.00 0.00 36.60 4.34
1296 1698 0.032403 CACGGTTCCTTGTGGTCGTA 59.968 55.000 0.00 0.00 35.39 3.43
1297 1699 0.032540 ACGGTTCCTTGTGGTCGTAC 59.967 55.000 0.00 0.00 35.39 3.67
1298 1700 0.316204 CGGTTCCTTGTGGTCGTACT 59.684 55.000 0.00 0.00 34.23 2.73
1299 1701 1.792006 GGTTCCTTGTGGTCGTACTG 58.208 55.000 0.00 0.00 34.23 2.74
1300 1702 1.069668 GGTTCCTTGTGGTCGTACTGT 59.930 52.381 0.00 0.00 34.23 3.55
1301 1703 2.401351 GTTCCTTGTGGTCGTACTGTC 58.599 52.381 0.00 0.00 34.23 3.51
1302 1704 0.594602 TCCTTGTGGTCGTACTGTCG 59.405 55.000 0.00 0.00 34.23 4.35
1303 1705 0.313043 CCTTGTGGTCGTACTGTCGT 59.687 55.000 0.00 0.00 0.00 4.34
1304 1706 1.269413 CCTTGTGGTCGTACTGTCGTT 60.269 52.381 0.00 0.00 0.00 3.85
1305 1707 1.784856 CTTGTGGTCGTACTGTCGTTG 59.215 52.381 0.00 0.00 0.00 4.10
1306 1708 0.740149 TGTGGTCGTACTGTCGTTGT 59.260 50.000 0.00 0.00 0.00 3.32
1307 1709 1.946081 TGTGGTCGTACTGTCGTTGTA 59.054 47.619 0.00 0.00 0.00 2.41
1308 1710 2.031769 TGTGGTCGTACTGTCGTTGTAG 60.032 50.000 0.00 0.00 0.00 2.74
1309 1711 1.536766 TGGTCGTACTGTCGTTGTAGG 59.463 52.381 0.00 0.00 0.00 3.18
1310 1712 1.611043 GTCGTACTGTCGTTGTAGGC 58.389 55.000 0.00 0.00 0.00 3.93
1311 1713 1.198637 GTCGTACTGTCGTTGTAGGCT 59.801 52.381 0.00 0.00 0.00 4.58
1312 1714 1.881973 TCGTACTGTCGTTGTAGGCTT 59.118 47.619 0.00 0.00 0.00 4.35
1313 1715 3.073678 TCGTACTGTCGTTGTAGGCTTA 58.926 45.455 0.00 0.00 0.00 3.09
1314 1716 3.691118 TCGTACTGTCGTTGTAGGCTTAT 59.309 43.478 0.00 0.00 0.00 1.73
1315 1717 4.156556 TCGTACTGTCGTTGTAGGCTTATT 59.843 41.667 0.00 0.00 0.00 1.40
1316 1718 4.860907 CGTACTGTCGTTGTAGGCTTATTT 59.139 41.667 0.00 0.00 0.00 1.40
1317 1719 5.346822 CGTACTGTCGTTGTAGGCTTATTTT 59.653 40.000 0.00 0.00 0.00 1.82
1318 1720 6.128742 CGTACTGTCGTTGTAGGCTTATTTTT 60.129 38.462 0.00 0.00 0.00 1.94
1338 1740 4.997905 TTTCTCGTTTTGATCTGAGCTG 57.002 40.909 0.00 0.00 0.00 4.24
1339 1741 3.942130 TCTCGTTTTGATCTGAGCTGA 57.058 42.857 0.00 0.00 0.00 4.26
1340 1742 3.842820 TCTCGTTTTGATCTGAGCTGAG 58.157 45.455 0.00 0.00 0.00 3.35
1341 1743 3.507622 TCTCGTTTTGATCTGAGCTGAGA 59.492 43.478 5.02 5.02 0.00 3.27
1342 1744 3.579709 TCGTTTTGATCTGAGCTGAGAC 58.420 45.455 4.55 0.35 0.00 3.36
1343 1745 3.005791 TCGTTTTGATCTGAGCTGAGACA 59.994 43.478 4.55 3.20 0.00 3.41
1344 1746 3.122613 CGTTTTGATCTGAGCTGAGACAC 59.877 47.826 4.55 3.64 0.00 3.67
1345 1747 3.325293 TTTGATCTGAGCTGAGACACC 57.675 47.619 4.55 0.00 0.00 4.16
1346 1748 1.189752 TGATCTGAGCTGAGACACCC 58.810 55.000 4.55 0.00 0.00 4.61
1347 1749 1.189752 GATCTGAGCTGAGACACCCA 58.810 55.000 4.55 0.00 0.00 4.51
1348 1750 0.901124 ATCTGAGCTGAGACACCCAC 59.099 55.000 4.55 0.00 0.00 4.61
1349 1751 1.188219 TCTGAGCTGAGACACCCACC 61.188 60.000 0.00 0.00 0.00 4.61
1350 1752 1.459348 TGAGCTGAGACACCCACCA 60.459 57.895 0.00 0.00 0.00 4.17
1351 1753 0.837691 TGAGCTGAGACACCCACCAT 60.838 55.000 0.00 0.00 0.00 3.55
1352 1754 0.107945 GAGCTGAGACACCCACCATC 60.108 60.000 0.00 0.00 0.00 3.51
1353 1755 0.546267 AGCTGAGACACCCACCATCT 60.546 55.000 0.00 0.00 0.00 2.90
1354 1756 0.107945 GCTGAGACACCCACCATCTC 60.108 60.000 0.00 0.00 39.50 2.75
1355 1757 1.269958 CTGAGACACCCACCATCTCA 58.730 55.000 3.37 3.37 45.09 3.27
1356 1758 0.976641 TGAGACACCCACCATCTCAC 59.023 55.000 0.00 0.00 43.01 3.51
1357 1759 0.976641 GAGACACCCACCATCTCACA 59.023 55.000 0.00 0.00 38.99 3.58
1358 1760 0.687354 AGACACCCACCATCTCACAC 59.313 55.000 0.00 0.00 0.00 3.82
1359 1761 0.687354 GACACCCACCATCTCACACT 59.313 55.000 0.00 0.00 0.00 3.55
1360 1762 1.899814 GACACCCACCATCTCACACTA 59.100 52.381 0.00 0.00 0.00 2.74
1361 1763 1.902508 ACACCCACCATCTCACACTAG 59.097 52.381 0.00 0.00 0.00 2.57
1362 1764 1.208052 CACCCACCATCTCACACTAGG 59.792 57.143 0.00 0.00 0.00 3.02
1363 1765 0.179000 CCCACCATCTCACACTAGGC 59.821 60.000 0.00 0.00 0.00 3.93
1364 1766 1.198713 CCACCATCTCACACTAGGCT 58.801 55.000 0.00 0.00 0.00 4.58
1365 1767 1.134580 CCACCATCTCACACTAGGCTG 60.135 57.143 0.00 0.00 0.00 4.85
1366 1768 1.552337 CACCATCTCACACTAGGCTGT 59.448 52.381 0.00 0.00 0.00 4.40
1367 1769 2.027745 CACCATCTCACACTAGGCTGTT 60.028 50.000 0.00 0.00 0.00 3.16
1368 1770 2.639839 ACCATCTCACACTAGGCTGTTT 59.360 45.455 0.00 0.00 0.00 2.83
1369 1771 3.265791 CCATCTCACACTAGGCTGTTTC 58.734 50.000 0.00 0.00 0.00 2.78
1370 1772 3.306989 CCATCTCACACTAGGCTGTTTCA 60.307 47.826 0.00 0.00 0.00 2.69
1371 1773 3.667497 TCTCACACTAGGCTGTTTCAG 57.333 47.619 0.00 0.00 34.12 3.02
1372 1774 2.965831 TCTCACACTAGGCTGTTTCAGT 59.034 45.455 0.00 0.00 33.43 3.41
1373 1775 3.388024 TCTCACACTAGGCTGTTTCAGTT 59.612 43.478 0.00 0.00 33.43 3.16
1374 1776 3.728845 TCACACTAGGCTGTTTCAGTTC 58.271 45.455 0.00 0.00 33.43 3.01
1375 1777 3.133901 TCACACTAGGCTGTTTCAGTTCA 59.866 43.478 0.00 0.00 33.43 3.18
1376 1778 4.067896 CACACTAGGCTGTTTCAGTTCAT 58.932 43.478 0.00 0.00 33.43 2.57
1377 1779 5.011635 TCACACTAGGCTGTTTCAGTTCATA 59.988 40.000 0.00 0.00 33.43 2.15
1378 1780 5.120830 CACACTAGGCTGTTTCAGTTCATAC 59.879 44.000 0.00 0.00 33.43 2.39
1379 1781 5.221641 ACACTAGGCTGTTTCAGTTCATACA 60.222 40.000 0.00 0.00 33.43 2.29
1380 1782 5.700832 CACTAGGCTGTTTCAGTTCATACAA 59.299 40.000 0.00 0.00 33.43 2.41
1381 1783 6.204688 CACTAGGCTGTTTCAGTTCATACAAA 59.795 38.462 0.00 0.00 33.43 2.83
1382 1784 6.942576 ACTAGGCTGTTTCAGTTCATACAAAT 59.057 34.615 0.00 0.00 33.43 2.32
1383 1785 6.655078 AGGCTGTTTCAGTTCATACAAATT 57.345 33.333 0.00 0.00 33.43 1.82
1384 1786 7.054491 AGGCTGTTTCAGTTCATACAAATTT 57.946 32.000 0.00 0.00 33.43 1.82
1385 1787 8.177119 AGGCTGTTTCAGTTCATACAAATTTA 57.823 30.769 0.00 0.00 33.43 1.40
1386 1788 8.637986 AGGCTGTTTCAGTTCATACAAATTTAA 58.362 29.630 0.00 0.00 33.43 1.52
1387 1789 8.915654 GGCTGTTTCAGTTCATACAAATTTAAG 58.084 33.333 0.00 0.00 33.43 1.85
1388 1790 9.463443 GCTGTTTCAGTTCATACAAATTTAAGT 57.537 29.630 0.00 0.00 33.43 2.24
1394 1796 8.869897 TCAGTTCATACAAATTTAAGTAGCTCG 58.130 33.333 0.00 0.00 0.00 5.03
1395 1797 8.656849 CAGTTCATACAAATTTAAGTAGCTCGT 58.343 33.333 0.00 0.00 0.00 4.18
1396 1798 9.216117 AGTTCATACAAATTTAAGTAGCTCGTT 57.784 29.630 0.00 0.00 0.00 3.85
1397 1799 9.821662 GTTCATACAAATTTAAGTAGCTCGTTT 57.178 29.630 0.00 0.00 0.00 3.60
1399 1801 9.431887 TCATACAAATTTAAGTAGCTCGTTTCT 57.568 29.630 0.00 0.00 0.00 2.52
1400 1802 9.478019 CATACAAATTTAAGTAGCTCGTTTCTG 57.522 33.333 0.00 0.00 0.00 3.02
1401 1803 7.492352 ACAAATTTAAGTAGCTCGTTTCTGT 57.508 32.000 0.00 0.00 0.00 3.41
1402 1804 7.573627 ACAAATTTAAGTAGCTCGTTTCTGTC 58.426 34.615 0.00 0.00 0.00 3.51
1403 1805 6.390987 AATTTAAGTAGCTCGTTTCTGTCG 57.609 37.500 0.00 0.00 0.00 4.35
1404 1806 4.494350 TTAAGTAGCTCGTTTCTGTCGT 57.506 40.909 0.00 0.00 0.00 4.34
1405 1807 2.615489 AGTAGCTCGTTTCTGTCGTC 57.385 50.000 0.00 0.00 0.00 4.20
1406 1808 1.136029 AGTAGCTCGTTTCTGTCGTCG 60.136 52.381 0.00 0.00 0.00 5.12
1407 1809 0.870393 TAGCTCGTTTCTGTCGTCGT 59.130 50.000 0.00 0.00 0.00 4.34
1408 1810 0.030369 AGCTCGTTTCTGTCGTCGTT 59.970 50.000 0.00 0.00 0.00 3.85
1409 1811 0.158928 GCTCGTTTCTGTCGTCGTTG 59.841 55.000 0.00 0.00 0.00 4.10
1410 1812 0.158928 CTCGTTTCTGTCGTCGTTGC 59.841 55.000 0.00 0.00 0.00 4.17
1411 1813 0.525882 TCGTTTCTGTCGTCGTTGCA 60.526 50.000 0.00 0.00 0.00 4.08
1412 1814 0.506932 CGTTTCTGTCGTCGTTGCAT 59.493 50.000 0.00 0.00 0.00 3.96
1413 1815 1.717113 CGTTTCTGTCGTCGTTGCATA 59.283 47.619 0.00 0.00 0.00 3.14
1414 1816 2.470140 CGTTTCTGTCGTCGTTGCATAC 60.470 50.000 0.00 0.00 0.00 2.39
1481 1883 1.536073 TTCAGGTCTGACAGGCTCCG 61.536 60.000 7.07 0.00 39.66 4.63
1483 1885 2.680352 GGTCTGACAGGCTCCGGA 60.680 66.667 2.93 2.93 0.00 5.14
1517 1919 1.597027 CCTTGGTCGCGAACACCTT 60.597 57.895 29.42 0.00 34.66 3.50
1521 1923 2.551270 GTCGCGAACACCTTGCTG 59.449 61.111 12.06 0.00 0.00 4.41
1547 1949 0.951040 CTCCACTCAACGTTGGGCTC 60.951 60.000 27.79 0.00 29.59 4.70
1586 1988 1.153289 CCTCCTGGATCTTGCGGTG 60.153 63.158 0.00 0.00 34.57 4.94
1656 2058 1.227556 GTGCTCCACCGTGTTCACT 60.228 57.895 0.00 0.00 0.00 3.41
1657 2059 1.227527 TGCTCCACCGTGTTCACTG 60.228 57.895 0.00 0.00 0.00 3.66
1667 2069 2.186160 TGTTCACTGCCGCCAACAG 61.186 57.895 0.00 0.00 41.08 3.16
1681 2083 2.448582 AACAGCACCCCACCGAAGA 61.449 57.895 0.00 0.00 0.00 2.87
1682 2084 2.358737 CAGCACCCCACCGAAGAC 60.359 66.667 0.00 0.00 0.00 3.01
1801 2203 1.559682 AGGGTTTATGCACTGACCGAT 59.440 47.619 0.00 0.00 32.91 4.18
1833 2235 0.249120 TCCCCTTCATAGTGTGTGCG 59.751 55.000 0.00 0.00 0.00 5.34
1854 2256 4.585364 CGTTGATGTTTGCAGATGAGATC 58.415 43.478 0.00 0.00 0.00 2.75
1861 2263 1.102978 TGCAGATGAGATCGGACGAA 58.897 50.000 0.00 0.00 0.00 3.85
1863 2265 2.123342 GCAGATGAGATCGGACGAAAG 58.877 52.381 0.00 0.00 0.00 2.62
1874 2276 2.144482 GGACGAAAGACCGTTTCTCA 57.856 50.000 0.00 0.00 43.49 3.27
1878 2280 2.606272 ACGAAAGACCGTTTCTCACAAC 59.394 45.455 0.00 0.00 40.17 3.32
1881 2283 1.583054 AGACCGTTTCTCACAACTGC 58.417 50.000 0.00 0.00 0.00 4.40
1913 2315 1.346722 ACTTTCACTACCGGAACAGGG 59.653 52.381 9.46 2.97 35.02 4.45
1916 2318 0.901580 TCACTACCGGAACAGGGGAC 60.902 60.000 9.46 0.00 35.02 4.46
1921 2323 1.305887 CCGGAACAGGGGACTACCT 60.306 63.158 0.00 0.00 43.08 3.08
1964 2366 0.255890 GCCCCTGTCAGCCTATTCAA 59.744 55.000 0.00 0.00 0.00 2.69
1975 2377 1.537202 GCCTATTCAAAGCTATGCCGG 59.463 52.381 0.00 0.00 0.00 6.13
2032 2434 2.733593 GACAGCCACCGTCGTCAC 60.734 66.667 0.00 0.00 0.00 3.67
2038 2440 2.014554 CCACCGTCGTCACAGAACG 61.015 63.158 0.00 0.00 43.92 3.95
2042 2444 3.103911 GTCGTCACAGAACGGCCG 61.104 66.667 26.86 26.86 41.26 6.13
2061 2463 1.750399 TCGGCCTAGGTACGACCAC 60.750 63.158 21.60 0.00 41.95 4.16
2108 2510 1.377202 CCGCCAGCATACTTGTGGT 60.377 57.895 0.00 0.00 35.09 4.16
2109 2511 0.960364 CCGCCAGCATACTTGTGGTT 60.960 55.000 0.00 0.00 35.09 3.67
2110 2512 0.881118 CGCCAGCATACTTGTGGTTT 59.119 50.000 0.00 0.00 33.51 3.27
2111 2513 1.401409 CGCCAGCATACTTGTGGTTTG 60.401 52.381 0.00 0.00 33.51 2.93
2112 2514 1.067635 GCCAGCATACTTGTGGTTTGG 60.068 52.381 0.00 0.00 33.51 3.28
2113 2515 1.545582 CCAGCATACTTGTGGTTTGGG 59.454 52.381 0.00 0.00 0.00 4.12
2114 2516 1.067635 CAGCATACTTGTGGTTTGGGC 60.068 52.381 0.00 0.00 0.00 5.36
2115 2517 0.965439 GCATACTTGTGGTTTGGGCA 59.035 50.000 0.00 0.00 0.00 5.36
2116 2518 1.550072 GCATACTTGTGGTTTGGGCAT 59.450 47.619 0.00 0.00 0.00 4.40
2117 2519 2.757868 GCATACTTGTGGTTTGGGCATA 59.242 45.455 0.00 0.00 0.00 3.14
2118 2520 3.384467 GCATACTTGTGGTTTGGGCATAT 59.616 43.478 0.00 0.00 0.00 1.78
2119 2521 4.141959 GCATACTTGTGGTTTGGGCATATT 60.142 41.667 0.00 0.00 0.00 1.28
2120 2522 3.959535 ACTTGTGGTTTGGGCATATTG 57.040 42.857 0.00 0.00 0.00 1.90
2121 2523 3.505386 ACTTGTGGTTTGGGCATATTGA 58.495 40.909 0.00 0.00 0.00 2.57
2122 2524 3.900601 ACTTGTGGTTTGGGCATATTGAA 59.099 39.130 0.00 0.00 0.00 2.69
2123 2525 4.531732 ACTTGTGGTTTGGGCATATTGAAT 59.468 37.500 0.00 0.00 0.00 2.57
2124 2526 5.012975 ACTTGTGGTTTGGGCATATTGAATT 59.987 36.000 0.00 0.00 0.00 2.17
2125 2527 5.083533 TGTGGTTTGGGCATATTGAATTC 57.916 39.130 0.00 0.00 0.00 2.17
2126 2528 4.081198 TGTGGTTTGGGCATATTGAATTCC 60.081 41.667 2.27 0.00 0.00 3.01
2127 2529 4.081198 GTGGTTTGGGCATATTGAATTCCA 60.081 41.667 2.27 0.00 0.00 3.53
2128 2530 4.533707 TGGTTTGGGCATATTGAATTCCAA 59.466 37.500 2.27 0.00 39.41 3.53
2129 2531 5.013495 TGGTTTGGGCATATTGAATTCCAAA 59.987 36.000 2.27 1.43 40.56 3.28
2130 2532 6.121590 GGTTTGGGCATATTGAATTCCAAAT 58.878 36.000 2.27 0.00 43.32 2.32
2131 2533 6.602803 GGTTTGGGCATATTGAATTCCAAATT 59.397 34.615 2.27 0.00 43.32 1.82
2132 2534 7.201723 GGTTTGGGCATATTGAATTCCAAATTC 60.202 37.037 2.27 5.64 43.32 2.17
2133 2535 6.556974 TGGGCATATTGAATTCCAAATTCA 57.443 33.333 10.28 10.28 38.43 2.57
2134 2536 7.139287 TGGGCATATTGAATTCCAAATTCAT 57.861 32.000 14.05 8.43 37.79 2.57
2135 2537 6.993308 TGGGCATATTGAATTCCAAATTCATG 59.007 34.615 14.05 11.19 37.79 3.07
2136 2538 7.147532 TGGGCATATTGAATTCCAAATTCATGA 60.148 33.333 14.05 0.00 37.79 3.07
2137 2539 7.716123 GGGCATATTGAATTCCAAATTCATGAA 59.284 33.333 11.26 11.26 37.79 2.57
2138 2540 9.280174 GGCATATTGAATTCCAAATTCATGAAT 57.720 29.630 15.36 15.36 37.79 2.57
2142 2544 7.815398 TTGAATTCCAAATTCATGAATGTCG 57.185 32.000 21.39 9.25 37.79 4.35
2143 2545 5.806502 TGAATTCCAAATTCATGAATGTCGC 59.193 36.000 21.39 6.98 33.55 5.19
2144 2546 3.781079 TCCAAATTCATGAATGTCGCC 57.219 42.857 21.39 0.00 0.00 5.54
2145 2547 2.426738 TCCAAATTCATGAATGTCGCCC 59.573 45.455 21.39 0.00 0.00 6.13
2146 2548 2.428171 CCAAATTCATGAATGTCGCCCT 59.572 45.455 21.39 1.16 0.00 5.19
2147 2549 3.489738 CCAAATTCATGAATGTCGCCCTC 60.490 47.826 21.39 0.00 0.00 4.30
2148 2550 1.972872 ATTCATGAATGTCGCCCTCC 58.027 50.000 20.11 0.00 0.00 4.30
2149 2551 0.911769 TTCATGAATGTCGCCCTCCT 59.088 50.000 3.38 0.00 0.00 3.69
2150 2552 0.911769 TCATGAATGTCGCCCTCCTT 59.088 50.000 0.00 0.00 0.00 3.36
2151 2553 1.281867 TCATGAATGTCGCCCTCCTTT 59.718 47.619 0.00 0.00 0.00 3.11
2152 2554 1.672881 CATGAATGTCGCCCTCCTTTC 59.327 52.381 0.00 0.00 0.00 2.62
2153 2555 0.035439 TGAATGTCGCCCTCCTTTCC 60.035 55.000 0.00 0.00 0.00 3.13
2154 2556 0.253327 GAATGTCGCCCTCCTTTCCT 59.747 55.000 0.00 0.00 0.00 3.36
2155 2557 0.035056 AATGTCGCCCTCCTTTCCTG 60.035 55.000 0.00 0.00 0.00 3.86
2156 2558 0.909610 ATGTCGCCCTCCTTTCCTGA 60.910 55.000 0.00 0.00 0.00 3.86
2157 2559 0.909610 TGTCGCCCTCCTTTCCTGAT 60.910 55.000 0.00 0.00 0.00 2.90
2158 2560 0.462759 GTCGCCCTCCTTTCCTGATG 60.463 60.000 0.00 0.00 0.00 3.07
2159 2561 1.153086 CGCCCTCCTTTCCTGATGG 60.153 63.158 0.00 0.00 0.00 3.51
2160 2562 1.915078 CGCCCTCCTTTCCTGATGGT 61.915 60.000 0.00 0.00 34.23 3.55
2161 2563 0.394899 GCCCTCCTTTCCTGATGGTG 60.395 60.000 0.00 0.00 34.23 4.17
2162 2564 0.257039 CCCTCCTTTCCTGATGGTGG 59.743 60.000 0.00 0.00 36.47 4.61
2163 2565 0.995024 CCTCCTTTCCTGATGGTGGT 59.005 55.000 0.00 0.00 33.63 4.16
2164 2566 1.340405 CCTCCTTTCCTGATGGTGGTG 60.340 57.143 0.00 0.00 33.63 4.17
2165 2567 0.698238 TCCTTTCCTGATGGTGGTGG 59.302 55.000 0.00 0.00 34.23 4.61
2166 2568 0.698238 CCTTTCCTGATGGTGGTGGA 59.302 55.000 0.00 0.00 34.23 4.02
2167 2569 1.340405 CCTTTCCTGATGGTGGTGGAG 60.340 57.143 0.00 0.00 34.23 3.86
2168 2570 0.698238 TTTCCTGATGGTGGTGGAGG 59.302 55.000 0.00 0.00 34.23 4.30
2169 2571 1.852157 TTCCTGATGGTGGTGGAGGC 61.852 60.000 0.00 0.00 34.23 4.70
2170 2572 2.304056 CCTGATGGTGGTGGAGGCT 61.304 63.158 0.00 0.00 0.00 4.58
2171 2573 0.982852 CCTGATGGTGGTGGAGGCTA 60.983 60.000 0.00 0.00 0.00 3.93
2172 2574 0.467384 CTGATGGTGGTGGAGGCTAG 59.533 60.000 0.00 0.00 0.00 3.42
2173 2575 1.147153 GATGGTGGTGGAGGCTAGC 59.853 63.158 6.04 6.04 0.00 3.42
2174 2576 2.330924 GATGGTGGTGGAGGCTAGCC 62.331 65.000 27.19 27.19 0.00 3.93
2175 2577 3.798511 GGTGGTGGAGGCTAGCCC 61.799 72.222 30.42 20.50 36.58 5.19
2176 2578 3.009115 GTGGTGGAGGCTAGCCCA 61.009 66.667 30.42 19.05 36.58 5.36
2177 2579 2.204074 TGGTGGAGGCTAGCCCAA 60.204 61.111 30.42 13.36 36.58 4.12
2178 2580 1.850289 TGGTGGAGGCTAGCCCAAA 60.850 57.895 30.42 12.97 36.58 3.28
2179 2581 1.382629 GGTGGAGGCTAGCCCAAAA 59.617 57.895 30.42 11.02 36.58 2.44
2180 2582 0.033109 GGTGGAGGCTAGCCCAAAAT 60.033 55.000 30.42 11.60 36.58 1.82
2181 2583 1.106285 GTGGAGGCTAGCCCAAAATG 58.894 55.000 30.42 0.00 36.58 2.32
2182 2584 0.998928 TGGAGGCTAGCCCAAAATGA 59.001 50.000 30.42 4.64 36.58 2.57
2183 2585 1.064463 TGGAGGCTAGCCCAAAATGAG 60.064 52.381 30.42 0.00 36.58 2.90
2184 2586 1.064389 GGAGGCTAGCCCAAAATGAGT 60.064 52.381 30.42 8.23 36.58 3.41
2185 2587 2.293170 GAGGCTAGCCCAAAATGAGTC 58.707 52.381 30.42 13.83 36.58 3.36
2186 2588 1.017387 GGCTAGCCCAAAATGAGTCG 58.983 55.000 24.19 0.00 0.00 4.18
2187 2589 1.017387 GCTAGCCCAAAATGAGTCGG 58.983 55.000 2.29 0.00 0.00 4.79
2188 2590 1.668419 CTAGCCCAAAATGAGTCGGG 58.332 55.000 0.00 0.00 42.03 5.14
2189 2591 0.988832 TAGCCCAAAATGAGTCGGGT 59.011 50.000 0.00 0.00 41.11 5.28
2190 2592 0.322546 AGCCCAAAATGAGTCGGGTC 60.323 55.000 0.00 0.00 41.11 4.46
2191 2593 0.322546 GCCCAAAATGAGTCGGGTCT 60.323 55.000 0.00 0.00 41.11 3.85
2192 2594 1.739067 CCCAAAATGAGTCGGGTCTC 58.261 55.000 0.00 0.00 33.67 3.36
2193 2595 1.279271 CCCAAAATGAGTCGGGTCTCT 59.721 52.381 0.00 0.00 35.68 3.10
2194 2596 2.350522 CCAAAATGAGTCGGGTCTCTG 58.649 52.381 0.00 0.00 35.68 3.35
2195 2597 2.289694 CCAAAATGAGTCGGGTCTCTGT 60.290 50.000 0.00 0.00 35.68 3.41
2196 2598 2.738846 CAAAATGAGTCGGGTCTCTGTG 59.261 50.000 0.00 0.00 35.68 3.66
2197 2599 0.247736 AATGAGTCGGGTCTCTGTGC 59.752 55.000 0.00 0.00 35.68 4.57
2198 2600 0.613292 ATGAGTCGGGTCTCTGTGCT 60.613 55.000 0.00 0.00 35.68 4.40
2199 2601 1.214062 GAGTCGGGTCTCTGTGCTG 59.786 63.158 0.00 0.00 0.00 4.41
2200 2602 1.228583 AGTCGGGTCTCTGTGCTGA 60.229 57.895 0.00 0.00 0.00 4.26
2201 2603 0.613292 AGTCGGGTCTCTGTGCTGAT 60.613 55.000 0.00 0.00 0.00 2.90
2202 2604 0.179124 GTCGGGTCTCTGTGCTGATC 60.179 60.000 0.00 0.00 0.00 2.92
2203 2605 0.323816 TCGGGTCTCTGTGCTGATCT 60.324 55.000 0.00 0.00 0.00 2.75
2204 2606 1.064685 TCGGGTCTCTGTGCTGATCTA 60.065 52.381 0.00 0.00 0.00 1.98
2205 2607 1.066303 CGGGTCTCTGTGCTGATCTAC 59.934 57.143 0.00 0.00 0.00 2.59
2206 2608 2.383855 GGGTCTCTGTGCTGATCTACT 58.616 52.381 0.00 0.00 0.00 2.57
2207 2609 2.763448 GGGTCTCTGTGCTGATCTACTT 59.237 50.000 0.00 0.00 0.00 2.24
2208 2610 3.954904 GGGTCTCTGTGCTGATCTACTTA 59.045 47.826 0.00 0.00 0.00 2.24
2209 2611 4.402793 GGGTCTCTGTGCTGATCTACTTAA 59.597 45.833 0.00 0.00 0.00 1.85
2210 2612 5.451242 GGGTCTCTGTGCTGATCTACTTAAG 60.451 48.000 0.00 0.00 0.00 1.85
2211 2613 5.451242 GGTCTCTGTGCTGATCTACTTAAGG 60.451 48.000 7.53 0.00 0.00 2.69
2212 2614 4.098654 TCTCTGTGCTGATCTACTTAAGGC 59.901 45.833 7.53 0.00 0.00 4.35
2213 2615 4.026744 TCTGTGCTGATCTACTTAAGGCT 58.973 43.478 7.53 0.00 0.00 4.58
2214 2616 5.201243 TCTGTGCTGATCTACTTAAGGCTA 58.799 41.667 7.53 0.00 0.00 3.93
2215 2617 5.656859 TCTGTGCTGATCTACTTAAGGCTAA 59.343 40.000 7.53 0.00 0.00 3.09
2216 2618 5.907207 TGTGCTGATCTACTTAAGGCTAAG 58.093 41.667 7.53 0.00 40.46 2.18
2218 2620 6.605995 TGTGCTGATCTACTTAAGGCTAAGTA 59.394 38.462 7.53 12.72 44.85 2.24
2219 2621 7.287927 TGTGCTGATCTACTTAAGGCTAAGTAT 59.712 37.037 7.53 5.17 45.37 2.12
2220 2622 8.145122 GTGCTGATCTACTTAAGGCTAAGTATT 58.855 37.037 7.53 7.53 45.37 1.89
2221 2623 8.705594 TGCTGATCTACTTAAGGCTAAGTATTT 58.294 33.333 7.53 7.29 45.37 1.40
2222 2624 9.198837 GCTGATCTACTTAAGGCTAAGTATTTC 57.801 37.037 7.53 12.98 45.37 2.17
2223 2625 9.699703 CTGATCTACTTAAGGCTAAGTATTTCC 57.300 37.037 7.53 7.34 45.37 3.13
2224 2626 8.648693 TGATCTACTTAAGGCTAAGTATTTCCC 58.351 37.037 7.53 6.26 45.37 3.97
2225 2627 8.800515 ATCTACTTAAGGCTAAGTATTTCCCT 57.199 34.615 7.53 0.00 45.37 4.20
2226 2628 9.893975 ATCTACTTAAGGCTAAGTATTTCCCTA 57.106 33.333 7.53 0.00 45.37 3.53
2227 2629 9.719433 TCTACTTAAGGCTAAGTATTTCCCTAA 57.281 33.333 7.53 0.00 45.37 2.69
2228 2630 9.761504 CTACTTAAGGCTAAGTATTTCCCTAAC 57.238 37.037 7.53 0.00 45.37 2.34
2229 2631 7.270779 ACTTAAGGCTAAGTATTTCCCTAACG 58.729 38.462 7.53 0.00 44.85 3.18
2230 2632 4.684484 AGGCTAAGTATTTCCCTAACGG 57.316 45.455 0.00 0.00 0.00 4.44
2231 2633 3.136763 GGCTAAGTATTTCCCTAACGGC 58.863 50.000 0.00 0.00 0.00 5.68
2232 2634 3.432608 GGCTAAGTATTTCCCTAACGGCA 60.433 47.826 0.00 0.00 0.00 5.69
2233 2635 4.193865 GCTAAGTATTTCCCTAACGGCAA 58.806 43.478 0.00 0.00 0.00 4.52
2234 2636 4.820173 GCTAAGTATTTCCCTAACGGCAAT 59.180 41.667 0.00 0.00 0.00 3.56
2235 2637 5.277828 GCTAAGTATTTCCCTAACGGCAATG 60.278 44.000 0.00 0.00 0.00 2.82
2236 2638 4.230745 AGTATTTCCCTAACGGCAATGT 57.769 40.909 0.00 0.00 0.00 2.71
2237 2639 4.595986 AGTATTTCCCTAACGGCAATGTT 58.404 39.130 0.00 0.00 35.86 2.71
2238 2640 5.014202 AGTATTTCCCTAACGGCAATGTTT 58.986 37.500 0.00 0.00 33.32 2.83
2239 2641 4.882842 ATTTCCCTAACGGCAATGTTTT 57.117 36.364 0.00 0.00 33.32 2.43
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 1.029408 TTGCAAACGTCTGGCACACT 61.029 50.000 8.06 0.00 37.26 3.55
15 16 1.431440 GTTGCAAACGTCTGGCACA 59.569 52.632 0.00 0.00 36.92 4.57
45 46 0.650512 AAACAGTTGTGTCGACAGCG 59.349 50.000 20.73 8.20 38.30 5.18
46 47 2.825086 AAAACAGTTGTGTCGACAGC 57.175 45.000 20.73 14.28 35.08 4.40
106 109 6.744082 TCGAGTACGTTAATAATATGCCATCG 59.256 38.462 0.00 0.00 40.69 3.84
109 112 8.645730 TTTTCGAGTACGTTAATAATATGCCA 57.354 30.769 0.00 0.00 40.69 4.92
318 387 0.598562 CTGACCGTAGCTATGCCGAT 59.401 55.000 7.49 0.00 0.00 4.18
362 434 2.928801 TATATGCCACGCCACTGATT 57.071 45.000 0.00 0.00 0.00 2.57
430 542 2.469847 CACGAATGCCACGTCACG 59.530 61.111 0.00 0.00 42.07 4.35
474 595 1.556564 CGTTCGAACTATGCCGACAT 58.443 50.000 24.80 0.00 40.49 3.06
475 596 1.074319 GCGTTCGAACTATGCCGACA 61.074 55.000 24.80 0.00 34.26 4.35
720 935 2.526888 TCACTACCGGAACAGGAGAT 57.473 50.000 9.46 0.00 34.73 2.75
723 938 2.036733 CACTTTCACTACCGGAACAGGA 59.963 50.000 9.46 0.00 34.73 3.86
755 970 3.071479 ACATACCGTTTCTCGCAATTGT 58.929 40.909 7.40 0.00 38.35 2.71
758 973 1.924524 CGACATACCGTTTCTCGCAAT 59.075 47.619 0.00 0.00 38.35 3.56
762 977 1.135603 TGGACGACATACCGTTTCTCG 60.136 52.381 0.00 0.00 43.49 4.04
773 988 2.169144 TGCAGATGAGATTGGACGACAT 59.831 45.455 0.00 0.00 0.00 3.06
775 990 2.299993 TGCAGATGAGATTGGACGAC 57.700 50.000 0.00 0.00 0.00 4.34
782 997 4.142227 GCCTTGATGTTTGCAGATGAGATT 60.142 41.667 0.00 0.00 0.00 2.40
803 1018 0.618458 TCCCCTTCATAGTGTGTGCC 59.382 55.000 0.00 0.00 0.00 5.01
835 1050 1.066143 AGGGTTTATGCACTGACCGAG 60.066 52.381 0.00 0.00 32.91 4.63
946 1161 3.353836 CAACACCCCACCGAAGCG 61.354 66.667 0.00 0.00 0.00 4.68
947 1162 1.826487 AACAACACCCCACCGAAGC 60.826 57.895 0.00 0.00 0.00 3.86
961 1184 2.519780 GTTCACCCCCGCCAACAA 60.520 61.111 0.00 0.00 0.00 2.83
971 1194 2.668550 GCTCCACCGTGTTCACCC 60.669 66.667 0.00 0.00 0.00 4.61
972 1195 2.110213 TGCTCCACCGTGTTCACC 59.890 61.111 0.00 0.00 0.00 4.02
1042 1265 0.032515 TCCTCCTGGATCTTGCGGTA 60.033 55.000 0.00 0.00 37.46 4.02
1081 1304 0.535102 CTCCACTCAACGTTGGGCTT 60.535 55.000 27.79 6.78 29.59 4.35
1111 1334 2.027625 CCTTGGTCGCGAACACCTC 61.028 63.158 29.42 4.70 34.66 3.85
1145 1368 4.459089 GGTCTGACAGGCTCCCGC 62.459 72.222 7.07 0.00 0.00 6.13
1147 1370 1.194781 TTCAGGTCTGACAGGCTCCC 61.195 60.000 7.07 0.54 39.66 4.30
1211 1434 1.542547 GGTTCTCGGCAAACTCCTTGA 60.543 52.381 0.00 0.00 37.17 3.02
1212 1435 0.875059 GGTTCTCGGCAAACTCCTTG 59.125 55.000 0.00 0.00 38.15 3.61
1213 1436 0.765510 AGGTTCTCGGCAAACTCCTT 59.234 50.000 0.00 0.00 0.00 3.36
1215 1617 0.321996 AGAGGTTCTCGGCAAACTCC 59.678 55.000 8.26 0.00 40.52 3.85
1219 1621 4.020573 TGATTAGAAGAGGTTCTCGGCAAA 60.021 41.667 0.00 0.00 42.40 3.68
1222 1624 3.802948 TGATTAGAAGAGGTTCTCGGC 57.197 47.619 0.00 0.00 42.40 5.54
1223 1625 4.434520 GGTTGATTAGAAGAGGTTCTCGG 58.565 47.826 0.00 0.00 42.40 4.63
1226 1628 4.846940 AGTGGGTTGATTAGAAGAGGTTCT 59.153 41.667 0.00 0.00 45.48 3.01
1227 1629 4.938226 CAGTGGGTTGATTAGAAGAGGTTC 59.062 45.833 0.00 0.00 0.00 3.62
1230 1632 4.223923 AGTCAGTGGGTTGATTAGAAGAGG 59.776 45.833 0.00 0.00 0.00 3.69
1234 1636 6.253758 TCTAGAGTCAGTGGGTTGATTAGAA 58.746 40.000 0.00 0.00 0.00 2.10
1236 1638 6.531503 TTCTAGAGTCAGTGGGTTGATTAG 57.468 41.667 0.00 0.00 0.00 1.73
1237 1639 7.201920 GCTATTCTAGAGTCAGTGGGTTGATTA 60.202 40.741 0.00 0.00 0.00 1.75
1239 1641 5.069781 GCTATTCTAGAGTCAGTGGGTTGAT 59.930 44.000 0.00 0.00 0.00 2.57
1240 1642 4.402793 GCTATTCTAGAGTCAGTGGGTTGA 59.597 45.833 0.00 0.00 0.00 3.18
1241 1643 4.404073 AGCTATTCTAGAGTCAGTGGGTTG 59.596 45.833 0.00 0.00 0.00 3.77
1242 1644 4.615513 AGCTATTCTAGAGTCAGTGGGTT 58.384 43.478 0.00 0.00 0.00 4.11
1243 1645 4.211920 GAGCTATTCTAGAGTCAGTGGGT 58.788 47.826 0.00 0.00 0.00 4.51
1244 1646 4.211125 TGAGCTATTCTAGAGTCAGTGGG 58.789 47.826 0.00 0.00 0.00 4.61
1245 1647 6.040278 TCAATGAGCTATTCTAGAGTCAGTGG 59.960 42.308 13.66 0.00 37.17 4.00
1246 1648 7.036996 TCAATGAGCTATTCTAGAGTCAGTG 57.963 40.000 10.07 10.07 37.54 3.66
1247 1649 7.505248 TCATCAATGAGCTATTCTAGAGTCAGT 59.495 37.037 0.00 0.00 32.11 3.41
1248 1650 7.884257 TCATCAATGAGCTATTCTAGAGTCAG 58.116 38.462 0.00 0.00 32.11 3.51
1249 1651 7.830099 TCATCAATGAGCTATTCTAGAGTCA 57.170 36.000 0.00 0.00 32.11 3.41
1250 1652 9.709495 AATTCATCAATGAGCTATTCTAGAGTC 57.291 33.333 0.00 0.00 38.19 3.36
1251 1653 9.709495 GAATTCATCAATGAGCTATTCTAGAGT 57.291 33.333 0.00 0.00 38.19 3.24
1252 1654 9.708092 TGAATTCATCAATGAGCTATTCTAGAG 57.292 33.333 3.38 0.00 38.19 2.43
1253 1655 9.486497 GTGAATTCATCAATGAGCTATTCTAGA 57.514 33.333 12.12 0.00 40.50 2.43
1254 1656 8.433893 CGTGAATTCATCAATGAGCTATTCTAG 58.566 37.037 12.12 0.00 40.50 2.43
1255 1657 7.386025 CCGTGAATTCATCAATGAGCTATTCTA 59.614 37.037 12.12 3.01 40.50 2.10
1256 1658 6.204301 CCGTGAATTCATCAATGAGCTATTCT 59.796 38.462 12.12 0.00 40.50 2.40
1257 1659 6.017605 ACCGTGAATTCATCAATGAGCTATTC 60.018 38.462 12.12 8.15 40.50 1.75
1258 1660 5.824624 ACCGTGAATTCATCAATGAGCTATT 59.175 36.000 12.12 0.00 40.50 1.73
1259 1661 5.371526 ACCGTGAATTCATCAATGAGCTAT 58.628 37.500 12.12 0.00 40.50 2.97
1260 1662 4.769688 ACCGTGAATTCATCAATGAGCTA 58.230 39.130 12.12 0.00 40.50 3.32
1261 1663 3.614092 ACCGTGAATTCATCAATGAGCT 58.386 40.909 12.12 0.00 40.50 4.09
1262 1664 4.346129 GAACCGTGAATTCATCAATGAGC 58.654 43.478 12.12 0.00 40.50 4.26
1263 1665 4.637534 AGGAACCGTGAATTCATCAATGAG 59.362 41.667 12.12 0.00 40.50 2.90
1264 1666 4.588899 AGGAACCGTGAATTCATCAATGA 58.411 39.130 12.12 0.00 40.50 2.57
1265 1667 4.970662 AGGAACCGTGAATTCATCAATG 57.029 40.909 12.12 1.68 40.50 2.82
1266 1668 4.766891 ACAAGGAACCGTGAATTCATCAAT 59.233 37.500 12.12 0.00 40.50 2.57
1267 1669 4.023279 CACAAGGAACCGTGAATTCATCAA 60.023 41.667 12.12 0.00 40.50 2.57
1268 1670 3.501828 CACAAGGAACCGTGAATTCATCA 59.498 43.478 12.12 0.00 34.62 3.07
1269 1671 3.119849 CCACAAGGAACCGTGAATTCATC 60.120 47.826 12.12 4.81 34.62 2.92
1270 1672 2.819608 CCACAAGGAACCGTGAATTCAT 59.180 45.455 12.12 0.00 34.62 2.57
1271 1673 2.226330 CCACAAGGAACCGTGAATTCA 58.774 47.619 13.09 3.38 34.62 2.57
1272 1674 2.225727 GACCACAAGGAACCGTGAATTC 59.774 50.000 13.09 0.00 38.69 2.17
1273 1675 2.227194 GACCACAAGGAACCGTGAATT 58.773 47.619 13.09 0.00 38.69 2.17
1274 1676 1.876416 CGACCACAAGGAACCGTGAAT 60.876 52.381 13.09 0.00 38.69 2.57
1275 1677 0.531090 CGACCACAAGGAACCGTGAA 60.531 55.000 13.09 0.00 38.69 3.18
1276 1678 1.068417 CGACCACAAGGAACCGTGA 59.932 57.895 13.09 0.00 38.69 4.35
1277 1679 0.032403 TACGACCACAAGGAACCGTG 59.968 55.000 5.33 5.33 38.55 4.94
1278 1680 0.032540 GTACGACCACAAGGAACCGT 59.967 55.000 0.00 0.00 40.13 4.83
1279 1681 0.316204 AGTACGACCACAAGGAACCG 59.684 55.000 0.00 0.00 38.69 4.44
1280 1682 1.069668 ACAGTACGACCACAAGGAACC 59.930 52.381 0.00 0.00 38.69 3.62
1281 1683 2.401351 GACAGTACGACCACAAGGAAC 58.599 52.381 0.00 0.00 38.69 3.62
1282 1684 1.001048 CGACAGTACGACCACAAGGAA 60.001 52.381 0.00 0.00 38.69 3.36
1283 1685 0.594602 CGACAGTACGACCACAAGGA 59.405 55.000 0.00 0.00 38.69 3.36
1284 1686 0.313043 ACGACAGTACGACCACAAGG 59.687 55.000 0.00 0.00 37.56 3.61
1285 1687 1.784856 CAACGACAGTACGACCACAAG 59.215 52.381 0.00 0.00 37.03 3.16
1286 1688 1.134753 ACAACGACAGTACGACCACAA 59.865 47.619 0.00 0.00 37.03 3.33
1287 1689 0.740149 ACAACGACAGTACGACCACA 59.260 50.000 0.00 0.00 37.03 4.17
1288 1690 2.578495 CTACAACGACAGTACGACCAC 58.422 52.381 0.00 0.00 37.03 4.16
1289 1691 1.536766 CCTACAACGACAGTACGACCA 59.463 52.381 0.00 0.00 37.03 4.02
1290 1692 1.730446 GCCTACAACGACAGTACGACC 60.730 57.143 0.00 0.00 37.03 4.79
1291 1693 1.198637 AGCCTACAACGACAGTACGAC 59.801 52.381 0.00 0.00 37.03 4.34
1292 1694 1.527034 AGCCTACAACGACAGTACGA 58.473 50.000 0.00 0.00 37.03 3.43
1293 1695 2.342910 AAGCCTACAACGACAGTACG 57.657 50.000 0.00 0.00 39.31 3.67
1294 1696 6.716898 AAAATAAGCCTACAACGACAGTAC 57.283 37.500 0.00 0.00 0.00 2.73
1315 1717 5.527214 TCAGCTCAGATCAAAACGAGAAAAA 59.473 36.000 0.00 0.00 0.00 1.94
1316 1718 5.056480 TCAGCTCAGATCAAAACGAGAAAA 58.944 37.500 0.00 0.00 0.00 2.29
1317 1719 4.631131 TCAGCTCAGATCAAAACGAGAAA 58.369 39.130 0.00 0.00 0.00 2.52
1318 1720 4.021981 TCTCAGCTCAGATCAAAACGAGAA 60.022 41.667 0.00 0.00 0.00 2.87
1319 1721 3.507622 TCTCAGCTCAGATCAAAACGAGA 59.492 43.478 0.00 0.00 0.00 4.04
1320 1722 3.611986 GTCTCAGCTCAGATCAAAACGAG 59.388 47.826 0.00 0.00 0.00 4.18
1321 1723 3.005791 TGTCTCAGCTCAGATCAAAACGA 59.994 43.478 0.00 0.00 0.00 3.85
1322 1724 3.122613 GTGTCTCAGCTCAGATCAAAACG 59.877 47.826 0.00 0.00 0.00 3.60
1323 1725 3.434984 GGTGTCTCAGCTCAGATCAAAAC 59.565 47.826 0.00 0.00 0.00 2.43
1324 1726 3.557898 GGGTGTCTCAGCTCAGATCAAAA 60.558 47.826 0.00 0.00 31.98 2.44
1325 1727 2.027745 GGGTGTCTCAGCTCAGATCAAA 60.028 50.000 0.00 0.00 31.98 2.69
1326 1728 1.552337 GGGTGTCTCAGCTCAGATCAA 59.448 52.381 0.00 0.00 31.98 2.57
1327 1729 1.189752 GGGTGTCTCAGCTCAGATCA 58.810 55.000 0.00 0.00 31.98 2.92
1328 1730 1.134848 GTGGGTGTCTCAGCTCAGATC 60.135 57.143 0.00 0.00 31.98 2.75
1329 1731 0.901124 GTGGGTGTCTCAGCTCAGAT 59.099 55.000 0.00 0.00 31.98 2.90
1330 1732 1.188219 GGTGGGTGTCTCAGCTCAGA 61.188 60.000 0.00 0.00 31.98 3.27
1331 1733 1.294780 GGTGGGTGTCTCAGCTCAG 59.705 63.158 0.00 0.00 31.98 3.35
1332 1734 0.837691 ATGGTGGGTGTCTCAGCTCA 60.838 55.000 0.77 0.00 34.15 4.26
1333 1735 0.107945 GATGGTGGGTGTCTCAGCTC 60.108 60.000 0.77 0.00 34.15 4.09
1334 1736 0.546267 AGATGGTGGGTGTCTCAGCT 60.546 55.000 0.77 0.00 34.15 4.24
1335 1737 0.107945 GAGATGGTGGGTGTCTCAGC 60.108 60.000 0.00 0.00 38.55 4.26
1336 1738 1.066573 GTGAGATGGTGGGTGTCTCAG 60.067 57.143 4.68 0.00 46.34 3.35
1337 1739 0.976641 GTGAGATGGTGGGTGTCTCA 59.023 55.000 0.51 0.51 44.32 3.27
1338 1740 0.976641 TGTGAGATGGTGGGTGTCTC 59.023 55.000 0.00 0.00 39.02 3.36
1339 1741 0.687354 GTGTGAGATGGTGGGTGTCT 59.313 55.000 0.00 0.00 0.00 3.41
1340 1742 0.687354 AGTGTGAGATGGTGGGTGTC 59.313 55.000 0.00 0.00 0.00 3.67
1341 1743 1.902508 CTAGTGTGAGATGGTGGGTGT 59.097 52.381 0.00 0.00 0.00 4.16
1342 1744 1.208052 CCTAGTGTGAGATGGTGGGTG 59.792 57.143 0.00 0.00 0.00 4.61
1343 1745 1.573108 CCTAGTGTGAGATGGTGGGT 58.427 55.000 0.00 0.00 0.00 4.51
1344 1746 0.179000 GCCTAGTGTGAGATGGTGGG 59.821 60.000 0.00 0.00 0.00 4.61
1345 1747 1.134580 CAGCCTAGTGTGAGATGGTGG 60.135 57.143 0.00 0.00 0.00 4.61
1346 1748 1.552337 ACAGCCTAGTGTGAGATGGTG 59.448 52.381 0.00 0.00 0.00 4.17
1347 1749 1.944177 ACAGCCTAGTGTGAGATGGT 58.056 50.000 0.00 0.00 0.00 3.55
1348 1750 3.265791 GAAACAGCCTAGTGTGAGATGG 58.734 50.000 0.00 0.00 0.00 3.51
1349 1751 3.930336 TGAAACAGCCTAGTGTGAGATG 58.070 45.455 0.00 0.00 0.00 2.90
1350 1752 3.580458 ACTGAAACAGCCTAGTGTGAGAT 59.420 43.478 0.00 0.00 34.37 2.75
1351 1753 2.965831 ACTGAAACAGCCTAGTGTGAGA 59.034 45.455 0.00 0.00 34.37 3.27
1352 1754 3.393089 ACTGAAACAGCCTAGTGTGAG 57.607 47.619 0.00 0.00 34.37 3.51
1353 1755 3.133901 TGAACTGAAACAGCCTAGTGTGA 59.866 43.478 0.00 0.00 34.37 3.58
1354 1756 3.466836 TGAACTGAAACAGCCTAGTGTG 58.533 45.455 0.00 0.00 34.37 3.82
1355 1757 3.838244 TGAACTGAAACAGCCTAGTGT 57.162 42.857 0.00 0.00 34.37 3.55
1356 1758 5.237815 TGTATGAACTGAAACAGCCTAGTG 58.762 41.667 0.00 0.00 34.37 2.74
1357 1759 5.483685 TGTATGAACTGAAACAGCCTAGT 57.516 39.130 0.00 0.00 34.37 2.57
1358 1760 6.801539 TTTGTATGAACTGAAACAGCCTAG 57.198 37.500 0.00 0.00 34.37 3.02
1359 1761 7.759489 AATTTGTATGAACTGAAACAGCCTA 57.241 32.000 0.00 0.00 34.37 3.93
1360 1762 6.655078 AATTTGTATGAACTGAAACAGCCT 57.345 33.333 0.00 0.00 34.37 4.58
1361 1763 8.810652 TTAAATTTGTATGAACTGAAACAGCC 57.189 30.769 0.00 0.00 34.37 4.85
1362 1764 9.463443 ACTTAAATTTGTATGAACTGAAACAGC 57.537 29.630 0.00 0.00 34.37 4.40
1368 1770 8.869897 CGAGCTACTTAAATTTGTATGAACTGA 58.130 33.333 0.00 0.00 0.00 3.41
1369 1771 8.656849 ACGAGCTACTTAAATTTGTATGAACTG 58.343 33.333 0.00 0.00 0.00 3.16
1370 1772 8.773404 ACGAGCTACTTAAATTTGTATGAACT 57.227 30.769 0.00 0.00 0.00 3.01
1371 1773 9.821662 AAACGAGCTACTTAAATTTGTATGAAC 57.178 29.630 0.00 0.00 0.00 3.18
1373 1775 9.431887 AGAAACGAGCTACTTAAATTTGTATGA 57.568 29.630 0.00 0.00 0.00 2.15
1374 1776 9.478019 CAGAAACGAGCTACTTAAATTTGTATG 57.522 33.333 0.00 0.00 0.00 2.39
1375 1777 9.216117 ACAGAAACGAGCTACTTAAATTTGTAT 57.784 29.630 0.00 0.00 0.00 2.29
1376 1778 8.597662 ACAGAAACGAGCTACTTAAATTTGTA 57.402 30.769 0.00 0.00 0.00 2.41
1377 1779 7.492352 ACAGAAACGAGCTACTTAAATTTGT 57.508 32.000 0.00 0.00 0.00 2.83
1378 1780 6.732392 CGACAGAAACGAGCTACTTAAATTTG 59.268 38.462 0.00 0.00 0.00 2.32
1379 1781 6.423001 ACGACAGAAACGAGCTACTTAAATTT 59.577 34.615 0.00 0.00 34.70 1.82
1380 1782 5.924825 ACGACAGAAACGAGCTACTTAAATT 59.075 36.000 0.00 0.00 34.70 1.82
1381 1783 5.467705 ACGACAGAAACGAGCTACTTAAAT 58.532 37.500 0.00 0.00 34.70 1.40
1382 1784 4.863491 ACGACAGAAACGAGCTACTTAAA 58.137 39.130 0.00 0.00 34.70 1.52
1383 1785 4.470462 GACGACAGAAACGAGCTACTTAA 58.530 43.478 0.00 0.00 34.70 1.85
1384 1786 3.424039 CGACGACAGAAACGAGCTACTTA 60.424 47.826 0.00 0.00 34.70 2.24
1385 1787 2.664971 CGACGACAGAAACGAGCTACTT 60.665 50.000 0.00 0.00 34.70 2.24
1386 1788 1.136029 CGACGACAGAAACGAGCTACT 60.136 52.381 0.00 0.00 34.70 2.57
1387 1789 1.248721 CGACGACAGAAACGAGCTAC 58.751 55.000 0.00 0.00 34.70 3.58
1388 1790 0.870393 ACGACGACAGAAACGAGCTA 59.130 50.000 0.00 0.00 34.70 3.32
1389 1791 0.030369 AACGACGACAGAAACGAGCT 59.970 50.000 0.00 0.00 34.70 4.09
1390 1792 0.158928 CAACGACGACAGAAACGAGC 59.841 55.000 0.00 0.00 34.70 5.03
1391 1793 0.158928 GCAACGACGACAGAAACGAG 59.841 55.000 0.00 0.00 34.70 4.18
1392 1794 0.525882 TGCAACGACGACAGAAACGA 60.526 50.000 0.00 0.00 34.70 3.85
1393 1795 0.506932 ATGCAACGACGACAGAAACG 59.493 50.000 0.00 0.00 0.00 3.60
1394 1796 3.086298 GTATGCAACGACGACAGAAAC 57.914 47.619 0.00 0.00 0.00 2.78
1406 1808 0.391130 TGAGGACAGGCGTATGCAAC 60.391 55.000 9.59 0.00 45.35 4.17
1407 1809 0.541392 ATGAGGACAGGCGTATGCAA 59.459 50.000 9.59 0.00 45.35 4.08
1408 1810 0.104855 GATGAGGACAGGCGTATGCA 59.895 55.000 9.59 0.00 45.35 3.96
1409 1811 0.390860 AGATGAGGACAGGCGTATGC 59.609 55.000 0.00 0.00 41.71 3.14
1410 1812 1.959985 AGAGATGAGGACAGGCGTATG 59.040 52.381 0.00 0.00 0.00 2.39
1411 1813 1.959985 CAGAGATGAGGACAGGCGTAT 59.040 52.381 0.00 0.00 0.00 3.06
1412 1814 1.064685 TCAGAGATGAGGACAGGCGTA 60.065 52.381 0.00 0.00 0.00 4.42
1413 1815 0.323816 TCAGAGATGAGGACAGGCGT 60.324 55.000 0.00 0.00 0.00 5.68
1414 1816 0.102120 GTCAGAGATGAGGACAGGCG 59.898 60.000 0.00 0.00 0.00 5.52
1415 1817 0.102120 CGTCAGAGATGAGGACAGGC 59.898 60.000 0.00 0.00 0.00 4.85
1416 1818 0.743688 CCGTCAGAGATGAGGACAGG 59.256 60.000 0.00 0.00 0.00 4.00
1417 1819 1.756430 TCCGTCAGAGATGAGGACAG 58.244 55.000 0.00 0.00 0.00 3.51
1481 1883 2.125673 TGGCGCTAAAGCTCGTCC 60.126 61.111 7.64 0.00 39.32 4.79
1483 1885 2.434359 GGTGGCGCTAAAGCTCGT 60.434 61.111 7.64 0.00 39.32 4.18
1517 1919 4.664267 AGTGGAGGGAGGGCAGCA 62.664 66.667 0.00 0.00 0.00 4.41
1521 1923 2.671682 GTTGAGTGGAGGGAGGGC 59.328 66.667 0.00 0.00 0.00 5.19
1586 1988 3.733960 GCAACTTCGCCGGGTTCC 61.734 66.667 2.18 0.00 0.00 3.62
1597 1999 2.715532 TTCGAGCTGCTCCGCAACTT 62.716 55.000 22.97 0.00 34.98 2.66
1760 2162 1.474077 GATTTGGTGGGCAAGCTAGTG 59.526 52.381 0.00 0.00 0.00 2.74
1763 2165 1.616725 CCTGATTTGGTGGGCAAGCTA 60.617 52.381 0.00 0.00 0.00 3.32
1801 2203 7.235606 CACTATGAAGGGGAAAGGAGTATATGA 59.764 40.741 0.00 0.00 0.00 2.15
1833 2235 4.495349 CCGATCTCATCTGCAAACATCAAC 60.495 45.833 0.00 0.00 0.00 3.18
1861 2263 1.940613 GCAGTTGTGAGAAACGGTCTT 59.059 47.619 0.00 0.00 36.41 3.01
1863 2265 0.586802 GGCAGTTGTGAGAAACGGTC 59.413 55.000 0.00 0.00 35.13 4.79
1874 2276 2.105477 AGTGACATCTCTTGGCAGTTGT 59.895 45.455 0.00 0.00 45.23 3.32
1878 2280 3.188048 GTGAAAGTGACATCTCTTGGCAG 59.812 47.826 0.00 0.00 46.64 4.85
1881 2283 4.932200 GGTAGTGAAAGTGACATCTCTTGG 59.068 45.833 0.00 0.00 31.00 3.61
1913 2315 3.885521 CGGCCGTCGAGGTAGTCC 61.886 72.222 19.50 0.00 43.70 3.85
1950 2352 3.879295 GCATAGCTTTGAATAGGCTGACA 59.121 43.478 8.49 0.00 37.50 3.58
1954 2356 2.498167 CGGCATAGCTTTGAATAGGCT 58.502 47.619 8.49 0.00 39.74 4.58
1964 2366 4.113815 TGGCTGCCGGCATAGCTT 62.114 61.111 32.02 0.00 44.01 3.74
2025 2427 3.103911 CGGCCGTTCTGTGACGAC 61.104 66.667 19.50 0.00 45.47 4.34
2049 2451 2.046411 TCGGCGTGGTCGTACCTA 60.046 61.111 6.85 0.00 39.58 3.08
2095 2497 1.256812 GCCCAAACCACAAGTATGCT 58.743 50.000 0.00 0.00 0.00 3.79
2096 2498 0.965439 TGCCCAAACCACAAGTATGC 59.035 50.000 0.00 0.00 0.00 3.14
2108 2510 7.400439 TGAATTTGGAATTCAATATGCCCAAA 58.600 30.769 12.30 6.95 44.53 3.28
2109 2511 6.955364 TGAATTTGGAATTCAATATGCCCAA 58.045 32.000 12.30 0.00 35.35 4.12
2110 2512 6.556974 TGAATTTGGAATTCAATATGCCCA 57.443 33.333 12.30 0.00 35.35 5.36
2111 2513 7.218614 TCATGAATTTGGAATTCAATATGCCC 58.781 34.615 17.08 0.00 40.84 5.36
2112 2514 8.665643 TTCATGAATTTGGAATTCAATATGCC 57.334 30.769 17.08 0.00 40.84 4.40
2116 2518 9.518906 CGACATTCATGAATTTGGAATTCAATA 57.481 29.630 18.41 8.04 40.84 1.90
2117 2519 7.010738 GCGACATTCATGAATTTGGAATTCAAT 59.989 33.333 18.41 6.69 40.84 2.57
2118 2520 6.310956 GCGACATTCATGAATTTGGAATTCAA 59.689 34.615 18.41 0.00 40.84 2.69
2119 2521 5.806502 GCGACATTCATGAATTTGGAATTCA 59.193 36.000 18.41 15.89 41.59 2.57
2120 2522 5.232838 GGCGACATTCATGAATTTGGAATTC 59.767 40.000 18.41 0.00 0.00 2.17
2121 2523 5.111293 GGCGACATTCATGAATTTGGAATT 58.889 37.500 18.41 0.00 0.00 2.17
2122 2524 4.441913 GGGCGACATTCATGAATTTGGAAT 60.442 41.667 18.41 0.55 0.00 3.01
2123 2525 3.119173 GGGCGACATTCATGAATTTGGAA 60.119 43.478 18.41 0.00 0.00 3.53
2124 2526 2.426738 GGGCGACATTCATGAATTTGGA 59.573 45.455 18.41 0.00 0.00 3.53
2125 2527 2.428171 AGGGCGACATTCATGAATTTGG 59.572 45.455 18.41 14.31 0.00 3.28
2126 2528 3.489738 GGAGGGCGACATTCATGAATTTG 60.490 47.826 18.41 12.43 0.00 2.32
2127 2529 2.689983 GGAGGGCGACATTCATGAATTT 59.310 45.455 18.41 12.60 0.00 1.82
2128 2530 2.092212 AGGAGGGCGACATTCATGAATT 60.092 45.455 18.41 10.05 0.00 2.17
2129 2531 1.492176 AGGAGGGCGACATTCATGAAT 59.508 47.619 15.36 15.36 0.00 2.57
2130 2532 0.911769 AGGAGGGCGACATTCATGAA 59.088 50.000 11.26 11.26 0.00 2.57
2131 2533 0.911769 AAGGAGGGCGACATTCATGA 59.088 50.000 0.00 0.00 0.00 3.07
2132 2534 1.672881 GAAAGGAGGGCGACATTCATG 59.327 52.381 0.00 0.00 0.00 3.07
2133 2535 1.408822 GGAAAGGAGGGCGACATTCAT 60.409 52.381 0.00 0.00 0.00 2.57
2134 2536 0.035439 GGAAAGGAGGGCGACATTCA 60.035 55.000 0.00 0.00 0.00 2.57
2135 2537 0.253327 AGGAAAGGAGGGCGACATTC 59.747 55.000 0.00 0.00 0.00 2.67
2136 2538 0.035056 CAGGAAAGGAGGGCGACATT 60.035 55.000 0.00 0.00 0.00 2.71
2137 2539 0.909610 TCAGGAAAGGAGGGCGACAT 60.910 55.000 0.00 0.00 0.00 3.06
2138 2540 0.909610 ATCAGGAAAGGAGGGCGACA 60.910 55.000 0.00 0.00 0.00 4.35
2139 2541 0.462759 CATCAGGAAAGGAGGGCGAC 60.463 60.000 0.00 0.00 0.00 5.19
2140 2542 1.626356 CCATCAGGAAAGGAGGGCGA 61.626 60.000 0.00 0.00 36.89 5.54
2141 2543 1.153086 CCATCAGGAAAGGAGGGCG 60.153 63.158 0.00 0.00 36.89 6.13
2142 2544 0.394899 CACCATCAGGAAAGGAGGGC 60.395 60.000 0.00 0.00 39.76 5.19
2143 2545 0.257039 CCACCATCAGGAAAGGAGGG 59.743 60.000 0.00 0.00 41.79 4.30
2144 2546 0.995024 ACCACCATCAGGAAAGGAGG 59.005 55.000 0.00 0.00 38.86 4.30
2145 2547 1.340405 CCACCACCATCAGGAAAGGAG 60.340 57.143 0.00 0.00 38.69 3.69
2146 2548 0.698238 CCACCACCATCAGGAAAGGA 59.302 55.000 0.00 0.00 38.69 3.36
2147 2549 0.698238 TCCACCACCATCAGGAAAGG 59.302 55.000 0.00 0.00 38.69 3.11
2148 2550 1.340405 CCTCCACCACCATCAGGAAAG 60.340 57.143 0.00 0.00 38.69 2.62
2149 2551 0.698238 CCTCCACCACCATCAGGAAA 59.302 55.000 0.00 0.00 38.69 3.13
2150 2552 1.852157 GCCTCCACCACCATCAGGAA 61.852 60.000 0.00 0.00 38.69 3.36
2151 2553 2.300967 GCCTCCACCACCATCAGGA 61.301 63.158 0.00 0.00 38.69 3.86
2152 2554 0.982852 TAGCCTCCACCACCATCAGG 60.983 60.000 0.00 0.00 42.21 3.86
2153 2555 0.467384 CTAGCCTCCACCACCATCAG 59.533 60.000 0.00 0.00 0.00 2.90
2154 2556 1.626356 GCTAGCCTCCACCACCATCA 61.626 60.000 2.29 0.00 0.00 3.07
2155 2557 1.147153 GCTAGCCTCCACCACCATC 59.853 63.158 2.29 0.00 0.00 3.51
2156 2558 2.378634 GGCTAGCCTCCACCACCAT 61.379 63.158 27.17 0.00 0.00 3.55
2157 2559 3.009115 GGCTAGCCTCCACCACCA 61.009 66.667 27.17 0.00 0.00 4.17
2158 2560 3.798511 GGGCTAGCCTCCACCACC 61.799 72.222 32.18 10.15 36.10 4.61
2159 2561 2.137177 TTTGGGCTAGCCTCCACCAC 62.137 60.000 32.18 14.84 36.10 4.16
2160 2562 1.431195 TTTTGGGCTAGCCTCCACCA 61.431 55.000 32.18 18.81 36.10 4.17
2161 2563 0.033109 ATTTTGGGCTAGCCTCCACC 60.033 55.000 32.18 16.31 36.10 4.61
2162 2564 1.106285 CATTTTGGGCTAGCCTCCAC 58.894 55.000 32.18 16.70 36.10 4.02
2163 2565 0.998928 TCATTTTGGGCTAGCCTCCA 59.001 50.000 32.18 20.31 36.10 3.86
2164 2566 1.064389 ACTCATTTTGGGCTAGCCTCC 60.064 52.381 32.18 17.82 36.10 4.30
2165 2567 2.293170 GACTCATTTTGGGCTAGCCTC 58.707 52.381 32.18 22.16 36.10 4.70
2166 2568 1.407437 CGACTCATTTTGGGCTAGCCT 60.407 52.381 32.18 10.40 36.10 4.58
2167 2569 1.017387 CGACTCATTTTGGGCTAGCC 58.983 55.000 26.55 26.55 0.00 3.93
2168 2570 1.017387 CCGACTCATTTTGGGCTAGC 58.983 55.000 6.04 6.04 0.00 3.42
2169 2571 1.065418 ACCCGACTCATTTTGGGCTAG 60.065 52.381 0.00 0.00 43.67 3.42
2170 2572 0.988832 ACCCGACTCATTTTGGGCTA 59.011 50.000 0.00 0.00 43.67 3.93
2171 2573 0.322546 GACCCGACTCATTTTGGGCT 60.323 55.000 0.00 0.00 43.67 5.19
2172 2574 0.322546 AGACCCGACTCATTTTGGGC 60.323 55.000 0.00 0.00 43.67 5.36
2173 2575 1.279271 AGAGACCCGACTCATTTTGGG 59.721 52.381 0.00 0.00 45.26 4.12
2174 2576 2.289694 ACAGAGACCCGACTCATTTTGG 60.290 50.000 0.00 0.00 39.14 3.28
2175 2577 2.738846 CACAGAGACCCGACTCATTTTG 59.261 50.000 0.00 0.00 39.14 2.44
2176 2578 2.872038 GCACAGAGACCCGACTCATTTT 60.872 50.000 0.00 0.00 39.14 1.82
2177 2579 1.338200 GCACAGAGACCCGACTCATTT 60.338 52.381 0.00 0.00 39.14 2.32
2178 2580 0.247736 GCACAGAGACCCGACTCATT 59.752 55.000 0.00 0.00 39.14 2.57
2179 2581 0.613292 AGCACAGAGACCCGACTCAT 60.613 55.000 0.00 0.00 39.14 2.90
2180 2582 1.228583 AGCACAGAGACCCGACTCA 60.229 57.895 0.00 0.00 39.14 3.41
2181 2583 1.214062 CAGCACAGAGACCCGACTC 59.786 63.158 0.00 0.00 37.19 3.36
2182 2584 0.613292 ATCAGCACAGAGACCCGACT 60.613 55.000 0.00 0.00 0.00 4.18
2183 2585 0.179124 GATCAGCACAGAGACCCGAC 60.179 60.000 0.00 0.00 0.00 4.79
2184 2586 0.323816 AGATCAGCACAGAGACCCGA 60.324 55.000 0.00 0.00 0.00 5.14
2185 2587 1.066303 GTAGATCAGCACAGAGACCCG 59.934 57.143 0.00 0.00 0.00 5.28
2186 2588 2.383855 AGTAGATCAGCACAGAGACCC 58.616 52.381 0.00 0.00 0.00 4.46
2187 2589 5.451242 CCTTAAGTAGATCAGCACAGAGACC 60.451 48.000 0.97 0.00 0.00 3.85
2188 2590 5.587289 CCTTAAGTAGATCAGCACAGAGAC 58.413 45.833 0.97 0.00 0.00 3.36
2189 2591 4.098654 GCCTTAAGTAGATCAGCACAGAGA 59.901 45.833 0.97 0.00 0.00 3.10
2190 2592 4.099266 AGCCTTAAGTAGATCAGCACAGAG 59.901 45.833 0.97 0.00 0.00 3.35
2191 2593 4.026744 AGCCTTAAGTAGATCAGCACAGA 58.973 43.478 0.97 0.00 0.00 3.41
2192 2594 4.399004 AGCCTTAAGTAGATCAGCACAG 57.601 45.455 0.97 0.00 0.00 3.66
2193 2595 5.422331 ACTTAGCCTTAAGTAGATCAGCACA 59.578 40.000 0.97 0.00 45.87 4.57
2194 2596 5.908341 ACTTAGCCTTAAGTAGATCAGCAC 58.092 41.667 0.97 0.00 45.87 4.40
2204 2606 7.634429 CCGTTAGGGAAATACTTAGCCTTAAGT 60.634 40.741 0.97 4.06 44.34 2.24
2205 2607 6.704937 CCGTTAGGGAAATACTTAGCCTTAAG 59.295 42.308 0.00 0.00 39.30 1.85
2206 2608 6.585416 CCGTTAGGGAAATACTTAGCCTTAA 58.415 40.000 0.00 0.00 38.47 1.85
2207 2609 5.453762 GCCGTTAGGGAAATACTTAGCCTTA 60.454 44.000 0.00 0.00 38.47 2.69
2208 2610 4.685302 GCCGTTAGGGAAATACTTAGCCTT 60.685 45.833 0.00 0.00 38.47 4.35
2209 2611 3.181457 GCCGTTAGGGAAATACTTAGCCT 60.181 47.826 0.00 0.00 38.47 4.58
2210 2612 3.136763 GCCGTTAGGGAAATACTTAGCC 58.863 50.000 0.00 0.00 38.47 3.93
2211 2613 3.800531 TGCCGTTAGGGAAATACTTAGC 58.199 45.455 0.00 0.00 38.47 3.09


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.