Multiple sequence alignment - TraesCS7B01G002900
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS7B01G002900 | chr7B | 100.000 | 7201 | 0 | 0 | 1 | 7201 | 1209405 | 1202205 | 0.000000e+00 | 13298.0 |
1 | TraesCS7B01G002900 | chr7B | 98.007 | 2559 | 21 | 17 | 4040 | 6595 | 1027835 | 1025304 | 0.000000e+00 | 4416.0 |
2 | TraesCS7B01G002900 | chr7B | 88.639 | 1822 | 144 | 24 | 3668 | 5453 | 1259337 | 1257543 | 0.000000e+00 | 2159.0 |
3 | TraesCS7B01G002900 | chr7B | 80.609 | 1150 | 135 | 53 | 2171 | 3253 | 1261029 | 1259901 | 0.000000e+00 | 808.0 |
4 | TraesCS7B01G002900 | chr7B | 82.985 | 717 | 51 | 28 | 5509 | 6198 | 1292943 | 1293615 | 3.740000e-162 | 582.0 |
5 | TraesCS7B01G002900 | chr7B | 90.031 | 321 | 27 | 3 | 5669 | 5989 | 1380647 | 1380962 | 1.870000e-110 | 411.0 |
6 | TraesCS7B01G002900 | chr7B | 84.096 | 415 | 30 | 22 | 1470 | 1849 | 1261891 | 1261478 | 1.140000e-97 | 368.0 |
7 | TraesCS7B01G002900 | chr7B | 90.741 | 216 | 15 | 5 | 3293 | 3506 | 1259728 | 1259516 | 4.250000e-72 | 283.0 |
8 | TraesCS7B01G002900 | chr7B | 84.397 | 282 | 32 | 5 | 2132 | 2409 | 253373003 | 253373276 | 4.280000e-67 | 267.0 |
9 | TraesCS7B01G002900 | chr7B | 94.706 | 170 | 5 | 3 | 3447 | 3615 | 1259518 | 1259352 | 1.990000e-65 | 261.0 |
10 | TraesCS7B01G002900 | chr7B | 80.184 | 217 | 28 | 7 | 945 | 1148 | 1262362 | 1262148 | 1.620000e-31 | 148.0 |
11 | TraesCS7B01G002900 | chr5B | 91.941 | 2730 | 145 | 40 | 3794 | 6485 | 711700249 | 711702941 | 0.000000e+00 | 3753.0 |
12 | TraesCS7B01G002900 | chr5B | 87.846 | 1876 | 159 | 27 | 3668 | 5507 | 711628321 | 711630163 | 0.000000e+00 | 2137.0 |
13 | TraesCS7B01G002900 | chr5B | 89.484 | 1008 | 46 | 31 | 3270 | 4242 | 711883874 | 711884856 | 0.000000e+00 | 1219.0 |
14 | TraesCS7B01G002900 | chr5B | 85.521 | 1181 | 89 | 39 | 1718 | 2861 | 711698200 | 711699335 | 0.000000e+00 | 1158.0 |
15 | TraesCS7B01G002900 | chr5B | 88.192 | 813 | 56 | 22 | 859 | 1658 | 711697423 | 711698208 | 0.000000e+00 | 933.0 |
16 | TraesCS7B01G002900 | chr5B | 81.397 | 1102 | 120 | 52 | 2171 | 3210 | 711626685 | 711627763 | 0.000000e+00 | 821.0 |
17 | TraesCS7B01G002900 | chr5B | 93.159 | 497 | 27 | 5 | 3077 | 3571 | 711699554 | 711700045 | 0.000000e+00 | 723.0 |
18 | TraesCS7B01G002900 | chr5B | 95.366 | 410 | 13 | 6 | 6154 | 6562 | 711707806 | 711708210 | 0.000000e+00 | 647.0 |
19 | TraesCS7B01G002900 | chr5B | 91.411 | 326 | 19 | 7 | 3293 | 3615 | 711627987 | 711628306 | 8.580000e-119 | 438.0 |
20 | TraesCS7B01G002900 | chr5B | 79.901 | 607 | 58 | 31 | 5509 | 6088 | 711548668 | 711548099 | 3.150000e-103 | 387.0 |
21 | TraesCS7B01G002900 | chr5B | 95.918 | 196 | 4 | 4 | 2900 | 3095 | 711699338 | 711699529 | 1.510000e-81 | 315.0 |
22 | TraesCS7B01G002900 | chr5B | 92.118 | 203 | 15 | 1 | 3004 | 3206 | 711883672 | 711883873 | 1.180000e-72 | 285.0 |
23 | TraesCS7B01G002900 | chr5B | 91.626 | 203 | 17 | 0 | 1470 | 1672 | 711625800 | 711626002 | 1.530000e-71 | 281.0 |
24 | TraesCS7B01G002900 | chr5B | 83.871 | 279 | 33 | 5 | 2135 | 2409 | 141775864 | 141775594 | 9.270000e-64 | 255.0 |
25 | TraesCS7B01G002900 | chr5B | 83.392 | 283 | 34 | 6 | 2132 | 2409 | 440783126 | 440783400 | 4.310000e-62 | 250.0 |
26 | TraesCS7B01G002900 | chr5B | 84.766 | 256 | 27 | 6 | 2158 | 2409 | 565845870 | 565845623 | 5.580000e-61 | 246.0 |
27 | TraesCS7B01G002900 | chr5B | 93.750 | 160 | 10 | 0 | 3632 | 3791 | 711700059 | 711700218 | 2.600000e-59 | 241.0 |
28 | TraesCS7B01G002900 | chr5B | 77.283 | 449 | 45 | 27 | 14 | 450 | 711696637 | 711697040 | 2.040000e-50 | 211.0 |
29 | TraesCS7B01G002900 | chr5B | 89.855 | 138 | 10 | 2 | 6265 | 6398 | 711548044 | 711547907 | 2.670000e-39 | 174.0 |
30 | TraesCS7B01G002900 | chr5B | 81.875 | 160 | 19 | 9 | 996 | 1145 | 711625361 | 711625520 | 7.580000e-25 | 126.0 |
31 | TraesCS7B01G002900 | chr5B | 91.379 | 58 | 4 | 1 | 2077 | 2133 | 711626535 | 711626592 | 2.150000e-10 | 78.7 |
32 | TraesCS7B01G002900 | chr5D | 94.335 | 1871 | 62 | 8 | 3664 | 5508 | 561795989 | 561797841 | 0.000000e+00 | 2828.0 |
33 | TraesCS7B01G002900 | chr5D | 88.717 | 1870 | 155 | 26 | 3668 | 5507 | 561703649 | 561705492 | 0.000000e+00 | 2233.0 |
34 | TraesCS7B01G002900 | chr5D | 88.504 | 1183 | 86 | 25 | 1718 | 2861 | 561794091 | 561795262 | 0.000000e+00 | 1386.0 |
35 | TraesCS7B01G002900 | chr5D | 93.521 | 710 | 36 | 6 | 5669 | 6371 | 561798069 | 561798775 | 0.000000e+00 | 1048.0 |
36 | TraesCS7B01G002900 | chr5D | 82.365 | 964 | 112 | 38 | 2171 | 3095 | 561702022 | 561702966 | 0.000000e+00 | 785.0 |
37 | TraesCS7B01G002900 | chr5D | 90.872 | 493 | 30 | 9 | 3077 | 3567 | 561795483 | 561795962 | 0.000000e+00 | 647.0 |
38 | TraesCS7B01G002900 | chr5D | 79.421 | 933 | 87 | 43 | 494 | 1387 | 561792348 | 561793214 | 4.880000e-156 | 562.0 |
39 | TraesCS7B01G002900 | chr5D | 85.582 | 541 | 39 | 16 | 5509 | 6022 | 561664402 | 561663874 | 1.380000e-146 | 531.0 |
40 | TraesCS7B01G002900 | chr5D | 82.787 | 610 | 61 | 15 | 6374 | 6969 | 561800074 | 561800653 | 8.340000e-139 | 505.0 |
41 | TraesCS7B01G002900 | chr5D | 92.615 | 325 | 17 | 5 | 3293 | 3615 | 561703315 | 561703634 | 1.830000e-125 | 460.0 |
42 | TraesCS7B01G002900 | chr5D | 91.277 | 321 | 23 | 3 | 5669 | 5989 | 561633280 | 561632965 | 3.990000e-117 | 433.0 |
43 | TraesCS7B01G002900 | chr5D | 96.954 | 197 | 4 | 2 | 2898 | 3094 | 561795263 | 561795457 | 5.390000e-86 | 329.0 |
44 | TraesCS7B01G002900 | chr5D | 94.634 | 205 | 8 | 3 | 1458 | 1662 | 561793901 | 561794102 | 1.510000e-81 | 315.0 |
45 | TraesCS7B01G002900 | chr5D | 91.304 | 207 | 15 | 1 | 1470 | 1673 | 561701153 | 561701359 | 5.500000e-71 | 279.0 |
46 | TraesCS7B01G002900 | chr5D | 88.166 | 169 | 17 | 3 | 5507 | 5674 | 561797872 | 561798038 | 1.580000e-46 | 198.0 |
47 | TraesCS7B01G002900 | chr5D | 91.367 | 139 | 12 | 0 | 1708 | 1846 | 561701435 | 561701573 | 2.650000e-44 | 191.0 |
48 | TraesCS7B01G002900 | chr5D | 85.326 | 184 | 15 | 4 | 5945 | 6119 | 561706071 | 561706251 | 5.740000e-41 | 180.0 |
49 | TraesCS7B01G002900 | chr5D | 85.119 | 168 | 20 | 3 | 983 | 1145 | 561700671 | 561700838 | 4.470000e-37 | 167.0 |
50 | TraesCS7B01G002900 | chr5D | 86.667 | 135 | 12 | 5 | 3077 | 3210 | 561702991 | 561703120 | 2.090000e-30 | 145.0 |
51 | TraesCS7B01G002900 | chr1B | 89.896 | 673 | 62 | 3 | 4489 | 5161 | 115774353 | 115773687 | 0.000000e+00 | 861.0 |
52 | TraesCS7B01G002900 | chr1B | 83.022 | 642 | 68 | 19 | 3800 | 4439 | 115826864 | 115826262 | 1.770000e-150 | 544.0 |
53 | TraesCS7B01G002900 | chr1B | 92.131 | 305 | 15 | 5 | 3315 | 3615 | 115827333 | 115827034 | 8.640000e-114 | 422.0 |
54 | TraesCS7B01G002900 | chr1B | 88.319 | 351 | 38 | 1 | 5157 | 5507 | 115755813 | 115755466 | 1.120000e-112 | 418.0 |
55 | TraesCS7B01G002900 | chr1B | 86.508 | 378 | 41 | 9 | 6596 | 6969 | 30713296 | 30713667 | 2.420000e-109 | 407.0 |
56 | TraesCS7B01G002900 | chr1B | 77.120 | 507 | 47 | 27 | 2744 | 3209 | 115827998 | 115827520 | 5.620000e-56 | 230.0 |
57 | TraesCS7B01G002900 | chr1B | 95.161 | 62 | 3 | 0 | 4444 | 4505 | 115774429 | 115774368 | 1.650000e-16 | 99.0 |
58 | TraesCS7B01G002900 | chr1B | 96.364 | 55 | 2 | 0 | 634 | 688 | 115653311 | 115653257 | 2.770000e-14 | 91.6 |
59 | TraesCS7B01G002900 | chr5A | 85.714 | 609 | 73 | 11 | 6598 | 7201 | 666218387 | 666217788 | 1.320000e-176 | 630.0 |
60 | TraesCS7B01G002900 | chr5A | 98.340 | 241 | 4 | 0 | 6961 | 7201 | 428113039 | 428113279 | 2.400000e-114 | 424.0 |
61 | TraesCS7B01G002900 | chr5A | 99.145 | 234 | 2 | 0 | 6968 | 7201 | 42316722 | 42316489 | 8.640000e-114 | 422.0 |
62 | TraesCS7B01G002900 | chr5A | 98.340 | 241 | 3 | 1 | 6961 | 7201 | 427253412 | 427253173 | 8.640000e-114 | 422.0 |
63 | TraesCS7B01G002900 | chr5A | 77.989 | 368 | 28 | 22 | 2021 | 2354 | 516395107 | 516394759 | 1.600000e-41 | 182.0 |
64 | TraesCS7B01G002900 | chr5A | 97.917 | 48 | 1 | 0 | 1929 | 1976 | 516395173 | 516395126 | 4.630000e-12 | 84.2 |
65 | TraesCS7B01G002900 | chr6A | 87.941 | 539 | 57 | 7 | 6666 | 7201 | 531375937 | 531375404 | 4.740000e-176 | 628.0 |
66 | TraesCS7B01G002900 | chr6A | 93.820 | 178 | 11 | 0 | 2917 | 3094 | 558138931 | 558139108 | 1.190000e-67 | 268.0 |
67 | TraesCS7B01G002900 | chr6A | 84.588 | 279 | 31 | 5 | 2135 | 2409 | 485254503 | 485254233 | 4.280000e-67 | 267.0 |
68 | TraesCS7B01G002900 | chr6A | 80.965 | 373 | 28 | 21 | 2018 | 2354 | 558138545 | 558138910 | 9.270000e-64 | 255.0 |
69 | TraesCS7B01G002900 | chr4B | 82.131 | 582 | 82 | 14 | 6603 | 7171 | 50152607 | 50152035 | 5.050000e-131 | 479.0 |
70 | TraesCS7B01G002900 | chr4B | 84.043 | 282 | 33 | 5 | 2132 | 2409 | 83557333 | 83557606 | 1.990000e-65 | 261.0 |
71 | TraesCS7B01G002900 | chr4B | 83.721 | 258 | 26 | 9 | 2158 | 2409 | 670159507 | 670159754 | 5.620000e-56 | 230.0 |
72 | TraesCS7B01G002900 | chr7A | 99.573 | 234 | 1 | 0 | 6968 | 7201 | 652589060 | 652589293 | 1.860000e-115 | 427.0 |
73 | TraesCS7B01G002900 | chr7A | 94.972 | 179 | 9 | 0 | 2917 | 3095 | 469605441 | 469605263 | 1.530000e-71 | 281.0 |
74 | TraesCS7B01G002900 | chr7A | 80.163 | 368 | 34 | 10 | 2021 | 2354 | 469605824 | 469605462 | 9.340000e-59 | 239.0 |
75 | TraesCS7B01G002900 | chr7A | 73.721 | 430 | 75 | 25 | 1546 | 1949 | 642526747 | 642527164 | 4.530000e-27 | 134.0 |
76 | TraesCS7B01G002900 | chr7A | 97.917 | 48 | 1 | 0 | 1929 | 1976 | 469605890 | 469605843 | 4.630000e-12 | 84.2 |
77 | TraesCS7B01G002900 | chr4A | 99.573 | 234 | 1 | 0 | 6968 | 7201 | 124991745 | 124991512 | 1.860000e-115 | 427.0 |
78 | TraesCS7B01G002900 | chr4A | 99.573 | 234 | 1 | 0 | 6968 | 7201 | 133046913 | 133047146 | 1.860000e-115 | 427.0 |
79 | TraesCS7B01G002900 | chr4A | 85.106 | 282 | 30 | 5 | 2132 | 2409 | 644679117 | 644679390 | 1.980000e-70 | 278.0 |
80 | TraesCS7B01G002900 | chr4A | 85.106 | 282 | 30 | 5 | 2132 | 2409 | 644727570 | 644727843 | 1.980000e-70 | 278.0 |
81 | TraesCS7B01G002900 | chr6B | 87.332 | 371 | 40 | 6 | 6603 | 6969 | 84603484 | 84603117 | 1.120000e-112 | 418.0 |
82 | TraesCS7B01G002900 | chr6B | 84.043 | 282 | 33 | 5 | 2132 | 2409 | 6058355 | 6058628 | 1.990000e-65 | 261.0 |
83 | TraesCS7B01G002900 | chr3D | 86.772 | 378 | 44 | 5 | 6594 | 6969 | 463681503 | 463681876 | 4.020000e-112 | 416.0 |
84 | TraesCS7B01G002900 | chr3D | 84.397 | 282 | 32 | 5 | 2132 | 2409 | 23499992 | 23500265 | 4.280000e-67 | 267.0 |
85 | TraesCS7B01G002900 | chr4D | 86.472 | 377 | 45 | 5 | 6595 | 6969 | 504283283 | 504283655 | 6.720000e-110 | 409.0 |
86 | TraesCS7B01G002900 | chr4D | 86.053 | 380 | 48 | 4 | 6591 | 6968 | 12695883 | 12696259 | 3.130000e-108 | 403.0 |
87 | TraesCS7B01G002900 | chr1D | 86.016 | 379 | 45 | 7 | 6594 | 6969 | 418520304 | 418519931 | 4.050000e-107 | 399.0 |
88 | TraesCS7B01G002900 | chr3A | 93.820 | 178 | 11 | 0 | 2917 | 3094 | 499505249 | 499505072 | 1.190000e-67 | 268.0 |
89 | TraesCS7B01G002900 | chr3A | 78.478 | 460 | 34 | 25 | 1929 | 2354 | 499505698 | 499505270 | 2.600000e-59 | 241.0 |
90 | TraesCS7B01G002900 | chr1A | 84.496 | 258 | 24 | 10 | 2158 | 2409 | 535701603 | 535701850 | 2.600000e-59 | 241.0 |
91 | TraesCS7B01G002900 | chr1A | 84.109 | 258 | 24 | 10 | 2158 | 2409 | 280003577 | 280003823 | 4.340000e-57 | 233.0 |
92 | TraesCS7B01G002900 | chr2D | 90.476 | 63 | 6 | 0 | 1469 | 1531 | 642817668 | 642817606 | 4.630000e-12 | 84.2 |
93 | TraesCS7B01G002900 | chr2B | 96.875 | 32 | 1 | 0 | 281 | 312 | 792994891 | 792994860 | 4.000000e-03 | 54.7 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS7B01G002900 | chr7B | 1202205 | 1209405 | 7200 | True | 13298.000000 | 13298 | 100.000000 | 1 | 7201 | 1 | chr7B.!!$R2 | 7200 |
1 | TraesCS7B01G002900 | chr7B | 1025304 | 1027835 | 2531 | True | 4416.000000 | 4416 | 98.007000 | 4040 | 6595 | 1 | chr7B.!!$R1 | 2555 |
2 | TraesCS7B01G002900 | chr7B | 1257543 | 1262362 | 4819 | True | 671.166667 | 2159 | 86.495833 | 945 | 5453 | 6 | chr7B.!!$R3 | 4508 |
3 | TraesCS7B01G002900 | chr7B | 1292943 | 1293615 | 672 | False | 582.000000 | 582 | 82.985000 | 5509 | 6198 | 1 | chr7B.!!$F1 | 689 |
4 | TraesCS7B01G002900 | chr5B | 711696637 | 711702941 | 6304 | False | 1047.714286 | 3753 | 89.394857 | 14 | 6485 | 7 | chr5B.!!$F4 | 6471 |
5 | TraesCS7B01G002900 | chr5B | 711883672 | 711884856 | 1184 | False | 752.000000 | 1219 | 90.801000 | 3004 | 4242 | 2 | chr5B.!!$F5 | 1238 |
6 | TraesCS7B01G002900 | chr5B | 711625361 | 711630163 | 4802 | False | 646.950000 | 2137 | 87.589000 | 996 | 5507 | 6 | chr5B.!!$F3 | 4511 |
7 | TraesCS7B01G002900 | chr5B | 711547907 | 711548668 | 761 | True | 280.500000 | 387 | 84.878000 | 5509 | 6398 | 2 | chr5B.!!$R3 | 889 |
8 | TraesCS7B01G002900 | chr5D | 561792348 | 561800653 | 8305 | False | 868.666667 | 2828 | 89.910444 | 494 | 6969 | 9 | chr5D.!!$F2 | 6475 |
9 | TraesCS7B01G002900 | chr5D | 561700671 | 561706251 | 5580 | False | 555.000000 | 2233 | 87.935000 | 983 | 6119 | 8 | chr5D.!!$F1 | 5136 |
10 | TraesCS7B01G002900 | chr5D | 561663874 | 561664402 | 528 | True | 531.000000 | 531 | 85.582000 | 5509 | 6022 | 1 | chr5D.!!$R2 | 513 |
11 | TraesCS7B01G002900 | chr1B | 115773687 | 115774429 | 742 | True | 480.000000 | 861 | 92.528500 | 4444 | 5161 | 2 | chr1B.!!$R3 | 717 |
12 | TraesCS7B01G002900 | chr1B | 115826262 | 115827998 | 1736 | True | 398.666667 | 544 | 84.091000 | 2744 | 4439 | 3 | chr1B.!!$R4 | 1695 |
13 | TraesCS7B01G002900 | chr5A | 666217788 | 666218387 | 599 | True | 630.000000 | 630 | 85.714000 | 6598 | 7201 | 1 | chr5A.!!$R3 | 603 |
14 | TraesCS7B01G002900 | chr6A | 531375404 | 531375937 | 533 | True | 628.000000 | 628 | 87.941000 | 6666 | 7201 | 1 | chr6A.!!$R2 | 535 |
15 | TraesCS7B01G002900 | chr6A | 558138545 | 558139108 | 563 | False | 261.500000 | 268 | 87.392500 | 2018 | 3094 | 2 | chr6A.!!$F1 | 1076 |
16 | TraesCS7B01G002900 | chr4B | 50152035 | 50152607 | 572 | True | 479.000000 | 479 | 82.131000 | 6603 | 7171 | 1 | chr4B.!!$R1 | 568 |
17 | TraesCS7B01G002900 | chr7A | 469605263 | 469605890 | 627 | True | 201.400000 | 281 | 91.017333 | 1929 | 3095 | 3 | chr7A.!!$R1 | 1166 |
18 | TraesCS7B01G002900 | chr3A | 499505072 | 499505698 | 626 | True | 254.500000 | 268 | 86.149000 | 1929 | 3094 | 2 | chr3A.!!$R1 | 1165 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
60 | 61 | 0.030297 | ATGGCATCTCTCCTCCTGGT | 60.030 | 55.0 | 0.00 | 0.0 | 34.23 | 4.00 | F |
1660 | 2549 | 0.101399 | CCATCCAGAGGTTCGTCTCG | 59.899 | 60.0 | 0.00 | 0.0 | 38.71 | 4.04 | F |
1710 | 2599 | 0.031994 | GGCTCATTTTGCGTGGTGTT | 59.968 | 50.0 | 0.00 | 0.0 | 0.00 | 3.32 | F |
1716 | 2605 | 0.176680 | TTTTGCGTGGTGTTGGCATT | 59.823 | 45.0 | 0.00 | 0.0 | 36.44 | 3.56 | F |
3306 | 4767 | 0.579630 | CTGTTGCGCTAACACGTTCA | 59.420 | 50.0 | 17.55 | 0.0 | 44.07 | 3.18 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1691 | 2580 | 0.031994 | AACACCACGCAAAATGAGCC | 59.968 | 50.000 | 0.00 | 0.00 | 0.00 | 4.70 | R |
2888 | 4143 | 0.687920 | TCCATTCACACCTTACCGCA | 59.312 | 50.000 | 0.00 | 0.00 | 0.00 | 5.69 | R |
2889 | 4144 | 2.038387 | ATCCATTCACACCTTACCGC | 57.962 | 50.000 | 0.00 | 0.00 | 0.00 | 5.68 | R |
3335 | 4796 | 4.207635 | CACAAATCAATGAACTGTGTGCAC | 59.792 | 41.667 | 10.75 | 10.75 | 34.13 | 4.57 | R |
6485 | 9821 | 6.881065 | TCAACACTATGGGAATTTGAAGAGAG | 59.119 | 38.462 | 0.00 | 0.00 | 0.00 | 3.20 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
42 | 43 | 9.412460 | TCTATCTGATTGTTCCATAAGCAAAAT | 57.588 | 29.630 | 0.00 | 0.00 | 0.00 | 1.82 |
56 | 57 | 1.680207 | GCAAAATGGCATCTCTCCTCC | 59.320 | 52.381 | 0.00 | 0.00 | 0.00 | 4.30 |
57 | 58 | 2.686118 | GCAAAATGGCATCTCTCCTCCT | 60.686 | 50.000 | 0.00 | 0.00 | 0.00 | 3.69 |
58 | 59 | 2.950309 | CAAAATGGCATCTCTCCTCCTG | 59.050 | 50.000 | 0.00 | 0.00 | 0.00 | 3.86 |
59 | 60 | 1.138568 | AATGGCATCTCTCCTCCTGG | 58.861 | 55.000 | 0.00 | 0.00 | 0.00 | 4.45 |
60 | 61 | 0.030297 | ATGGCATCTCTCCTCCTGGT | 60.030 | 55.000 | 0.00 | 0.00 | 34.23 | 4.00 |
61 | 62 | 0.979709 | TGGCATCTCTCCTCCTGGTG | 60.980 | 60.000 | 0.00 | 0.00 | 34.23 | 4.17 |
62 | 63 | 1.145819 | GCATCTCTCCTCCTGGTGC | 59.854 | 63.158 | 0.00 | 0.00 | 34.23 | 5.01 |
63 | 64 | 1.336632 | GCATCTCTCCTCCTGGTGCT | 61.337 | 60.000 | 0.00 | 0.00 | 30.50 | 4.40 |
64 | 65 | 0.464870 | CATCTCTCCTCCTGGTGCTG | 59.535 | 60.000 | 0.00 | 0.00 | 34.23 | 4.41 |
65 | 66 | 0.690411 | ATCTCTCCTCCTGGTGCTGG | 60.690 | 60.000 | 0.00 | 0.00 | 34.23 | 4.85 |
66 | 67 | 1.611851 | CTCTCCTCCTGGTGCTGGT | 60.612 | 63.158 | 0.00 | 0.00 | 34.23 | 4.00 |
67 | 68 | 1.897225 | CTCTCCTCCTGGTGCTGGTG | 61.897 | 65.000 | 0.00 | 0.00 | 34.23 | 4.17 |
108 | 109 | 3.533606 | AGAATCTGTCCATCAAGACCG | 57.466 | 47.619 | 0.00 | 0.00 | 35.83 | 4.79 |
110 | 111 | 3.515502 | AGAATCTGTCCATCAAGACCGAA | 59.484 | 43.478 | 0.00 | 0.00 | 34.30 | 4.30 |
139 | 140 | 2.703007 | ACCACCAAATTAAAAGGCAGCA | 59.297 | 40.909 | 0.00 | 0.00 | 0.00 | 4.41 |
140 | 141 | 3.135530 | ACCACCAAATTAAAAGGCAGCAA | 59.864 | 39.130 | 0.00 | 0.00 | 0.00 | 3.91 |
141 | 142 | 3.747529 | CCACCAAATTAAAAGGCAGCAAG | 59.252 | 43.478 | 0.00 | 0.00 | 0.00 | 4.01 |
142 | 143 | 3.187022 | CACCAAATTAAAAGGCAGCAAGC | 59.813 | 43.478 | 0.00 | 0.00 | 44.65 | 4.01 |
163 | 164 | 3.544682 | GCAAAGCAAAGCAAAGCAAAAAG | 59.455 | 39.130 | 0.00 | 0.00 | 0.00 | 2.27 |
164 | 165 | 4.672283 | GCAAAGCAAAGCAAAGCAAAAAGA | 60.672 | 37.500 | 0.00 | 0.00 | 0.00 | 2.52 |
166 | 167 | 4.870221 | AGCAAAGCAAAGCAAAAAGAAG | 57.130 | 36.364 | 0.00 | 0.00 | 0.00 | 2.85 |
202 | 208 | 7.016170 | GGCTCTCCCTCTCTCTTAATCTTAATT | 59.984 | 40.741 | 0.00 | 0.00 | 0.00 | 1.40 |
225 | 231 | 5.499004 | TTAGTCTCACCACCAGCTTAATT | 57.501 | 39.130 | 0.00 | 0.00 | 0.00 | 1.40 |
226 | 232 | 6.614694 | TTAGTCTCACCACCAGCTTAATTA | 57.385 | 37.500 | 0.00 | 0.00 | 0.00 | 1.40 |
227 | 233 | 5.091261 | AGTCTCACCACCAGCTTAATTAG | 57.909 | 43.478 | 0.00 | 0.00 | 0.00 | 1.73 |
258 | 279 | 1.780503 | AAATGAGCAGCATAACCCCC | 58.219 | 50.000 | 0.00 | 0.00 | 35.78 | 5.40 |
259 | 280 | 0.929244 | AATGAGCAGCATAACCCCCT | 59.071 | 50.000 | 0.00 | 0.00 | 35.78 | 4.79 |
261 | 282 | 1.152881 | GAGCAGCATAACCCCCTGG | 60.153 | 63.158 | 0.00 | 0.00 | 37.80 | 4.45 |
262 | 283 | 2.834968 | GCAGCATAACCCCCTGGC | 60.835 | 66.667 | 0.00 | 0.00 | 33.59 | 4.85 |
266 | 287 | 2.123726 | CATAACCCCCTGGCTGGC | 60.124 | 66.667 | 4.64 | 0.00 | 33.59 | 4.85 |
267 | 288 | 2.616893 | ATAACCCCCTGGCTGGCA | 60.617 | 61.111 | 4.64 | 3.18 | 33.59 | 4.92 |
268 | 289 | 2.014550 | ATAACCCCCTGGCTGGCAT | 61.015 | 57.895 | 3.74 | 0.00 | 33.59 | 4.40 |
269 | 290 | 2.302517 | ATAACCCCCTGGCTGGCATG | 62.303 | 60.000 | 3.74 | 1.33 | 33.59 | 4.06 |
274 | 295 | 4.753662 | CCTGGCTGGCATGGCACT | 62.754 | 66.667 | 19.43 | 0.00 | 37.59 | 4.40 |
275 | 296 | 2.678934 | CTGGCTGGCATGGCACTT | 60.679 | 61.111 | 19.43 | 0.00 | 37.59 | 3.16 |
276 | 297 | 2.992689 | TGGCTGGCATGGCACTTG | 60.993 | 61.111 | 19.43 | 10.31 | 37.59 | 3.16 |
277 | 298 | 4.446413 | GGCTGGCATGGCACTTGC | 62.446 | 66.667 | 19.43 | 19.67 | 39.41 | 4.01 |
278 | 299 | 3.379445 | GCTGGCATGGCACTTGCT | 61.379 | 61.111 | 19.43 | 0.00 | 40.03 | 3.91 |
279 | 300 | 2.882876 | CTGGCATGGCACTTGCTC | 59.117 | 61.111 | 19.43 | 4.29 | 40.03 | 4.26 |
280 | 301 | 2.677524 | TGGCATGGCACTTGCTCC | 60.678 | 61.111 | 19.43 | 0.00 | 40.03 | 4.70 |
281 | 302 | 2.362120 | GGCATGGCACTTGCTCCT | 60.362 | 61.111 | 15.47 | 0.00 | 40.03 | 3.69 |
282 | 303 | 2.413142 | GGCATGGCACTTGCTCCTC | 61.413 | 63.158 | 15.47 | 0.00 | 40.03 | 3.71 |
283 | 304 | 1.676635 | GCATGGCACTTGCTCCTCA | 60.677 | 57.895 | 5.84 | 0.00 | 41.70 | 3.86 |
284 | 305 | 1.930908 | GCATGGCACTTGCTCCTCAC | 61.931 | 60.000 | 5.84 | 0.00 | 41.70 | 3.51 |
285 | 306 | 0.607217 | CATGGCACTTGCTCCTCACA | 60.607 | 55.000 | 0.38 | 0.00 | 41.70 | 3.58 |
286 | 307 | 0.330604 | ATGGCACTTGCTCCTCACAT | 59.669 | 50.000 | 0.38 | 0.00 | 41.70 | 3.21 |
287 | 308 | 0.321919 | TGGCACTTGCTCCTCACATC | 60.322 | 55.000 | 0.38 | 0.00 | 41.70 | 3.06 |
288 | 309 | 1.364626 | GGCACTTGCTCCTCACATCG | 61.365 | 60.000 | 0.38 | 0.00 | 41.70 | 3.84 |
289 | 310 | 1.975363 | GCACTTGCTCCTCACATCGC | 61.975 | 60.000 | 0.00 | 0.00 | 38.21 | 4.58 |
290 | 311 | 0.671472 | CACTTGCTCCTCACATCGCA | 60.671 | 55.000 | 0.00 | 0.00 | 0.00 | 5.10 |
291 | 312 | 0.251354 | ACTTGCTCCTCACATCGCAT | 59.749 | 50.000 | 0.00 | 0.00 | 31.77 | 4.73 |
292 | 313 | 0.935898 | CTTGCTCCTCACATCGCATC | 59.064 | 55.000 | 0.00 | 0.00 | 31.77 | 3.91 |
293 | 314 | 0.249955 | TTGCTCCTCACATCGCATCA | 59.750 | 50.000 | 0.00 | 0.00 | 31.77 | 3.07 |
319 | 340 | 5.011586 | TCACATCACATCACATGGTTGATT | 58.988 | 37.500 | 0.00 | 0.00 | 33.74 | 2.57 |
320 | 341 | 5.099575 | CACATCACATCACATGGTTGATTG | 58.900 | 41.667 | 0.00 | 0.00 | 33.74 | 2.67 |
327 | 350 | 6.258287 | CACATCACATGGTTGATTGTTGTTTT | 59.742 | 34.615 | 0.00 | 0.00 | 33.74 | 2.43 |
342 | 365 | 5.820131 | TGTTGTTTTTATGCTCTGTCACTG | 58.180 | 37.500 | 0.00 | 0.00 | 0.00 | 3.66 |
366 | 396 | 8.978874 | TGCTCACATACTTCCATTTACATTAT | 57.021 | 30.769 | 0.00 | 0.00 | 0.00 | 1.28 |
370 | 400 | 9.502091 | TCACATACTTCCATTTACATTATAGGC | 57.498 | 33.333 | 0.00 | 0.00 | 0.00 | 3.93 |
374 | 404 | 6.911308 | ACTTCCATTTACATTATAGGCCTGT | 58.089 | 36.000 | 17.99 | 12.48 | 0.00 | 4.00 |
384 | 414 | 2.080654 | ATAGGCCTGTCTGTCCTCTC | 57.919 | 55.000 | 17.99 | 0.00 | 0.00 | 3.20 |
386 | 416 | 0.324275 | AGGCCTGTCTGTCCTCTCTC | 60.324 | 60.000 | 3.11 | 0.00 | 0.00 | 3.20 |
388 | 418 | 1.555967 | GCCTGTCTGTCCTCTCTCTT | 58.444 | 55.000 | 0.00 | 0.00 | 0.00 | 2.85 |
390 | 420 | 2.353605 | GCCTGTCTGTCCTCTCTCTTTG | 60.354 | 54.545 | 0.00 | 0.00 | 0.00 | 2.77 |
391 | 421 | 2.896685 | CCTGTCTGTCCTCTCTCTTTGT | 59.103 | 50.000 | 0.00 | 0.00 | 0.00 | 2.83 |
392 | 422 | 3.056891 | CCTGTCTGTCCTCTCTCTTTGTC | 60.057 | 52.174 | 0.00 | 0.00 | 0.00 | 3.18 |
394 | 424 | 3.161866 | GTCTGTCCTCTCTCTTTGTCCT | 58.838 | 50.000 | 0.00 | 0.00 | 0.00 | 3.85 |
396 | 426 | 3.829601 | TCTGTCCTCTCTCTTTGTCCTTC | 59.170 | 47.826 | 0.00 | 0.00 | 0.00 | 3.46 |
397 | 427 | 3.831911 | CTGTCCTCTCTCTTTGTCCTTCT | 59.168 | 47.826 | 0.00 | 0.00 | 0.00 | 2.85 |
399 | 429 | 5.013547 | TGTCCTCTCTCTTTGTCCTTCTAG | 58.986 | 45.833 | 0.00 | 0.00 | 0.00 | 2.43 |
401 | 431 | 5.124936 | GTCCTCTCTCTTTGTCCTTCTAGTC | 59.875 | 48.000 | 0.00 | 0.00 | 0.00 | 2.59 |
402 | 432 | 4.401202 | CCTCTCTCTTTGTCCTTCTAGTCC | 59.599 | 50.000 | 0.00 | 0.00 | 0.00 | 3.85 |
403 | 433 | 5.261216 | CTCTCTCTTTGTCCTTCTAGTCCT | 58.739 | 45.833 | 0.00 | 0.00 | 0.00 | 3.85 |
404 | 434 | 6.390048 | TCTCTCTTTGTCCTTCTAGTCCTA | 57.610 | 41.667 | 0.00 | 0.00 | 0.00 | 2.94 |
405 | 435 | 6.181908 | TCTCTCTTTGTCCTTCTAGTCCTAC | 58.818 | 44.000 | 0.00 | 0.00 | 0.00 | 3.18 |
406 | 436 | 5.888901 | TCTCTTTGTCCTTCTAGTCCTACA | 58.111 | 41.667 | 0.00 | 0.00 | 0.00 | 2.74 |
407 | 437 | 5.946972 | TCTCTTTGTCCTTCTAGTCCTACAG | 59.053 | 44.000 | 0.00 | 0.00 | 0.00 | 2.74 |
408 | 438 | 5.642165 | TCTTTGTCCTTCTAGTCCTACAGT | 58.358 | 41.667 | 0.00 | 0.00 | 0.00 | 3.55 |
409 | 439 | 6.787170 | TCTTTGTCCTTCTAGTCCTACAGTA | 58.213 | 40.000 | 0.00 | 0.00 | 0.00 | 2.74 |
410 | 440 | 6.658391 | TCTTTGTCCTTCTAGTCCTACAGTAC | 59.342 | 42.308 | 0.00 | 0.00 | 0.00 | 2.73 |
411 | 441 | 5.509832 | TGTCCTTCTAGTCCTACAGTACA | 57.490 | 43.478 | 0.00 | 0.00 | 0.00 | 2.90 |
412 | 442 | 5.498393 | TGTCCTTCTAGTCCTACAGTACAG | 58.502 | 45.833 | 0.00 | 0.00 | 0.00 | 2.74 |
413 | 443 | 5.013913 | TGTCCTTCTAGTCCTACAGTACAGT | 59.986 | 44.000 | 0.00 | 0.00 | 0.00 | 3.55 |
414 | 444 | 6.214208 | TGTCCTTCTAGTCCTACAGTACAGTA | 59.786 | 42.308 | 0.00 | 0.00 | 0.00 | 2.74 |
425 | 455 | 7.064016 | GTCCTACAGTACAGTACAGTACAGTAC | 59.936 | 44.444 | 27.31 | 27.31 | 46.04 | 2.73 |
438 | 468 | 9.467258 | GTACAGTACAGTACAGTGAAATTAACA | 57.533 | 33.333 | 20.17 | 0.00 | 42.97 | 2.41 |
450 | 480 | 7.147312 | CAGTGAAATTAACAGAATCCAAAGCA | 58.853 | 34.615 | 0.00 | 0.00 | 0.00 | 3.91 |
451 | 481 | 7.816031 | CAGTGAAATTAACAGAATCCAAAGCAT | 59.184 | 33.333 | 0.00 | 0.00 | 0.00 | 3.79 |
452 | 482 | 7.816031 | AGTGAAATTAACAGAATCCAAAGCATG | 59.184 | 33.333 | 0.00 | 0.00 | 0.00 | 4.06 |
453 | 483 | 6.591062 | TGAAATTAACAGAATCCAAAGCATGC | 59.409 | 34.615 | 10.51 | 10.51 | 0.00 | 4.06 |
454 | 484 | 4.454728 | TTAACAGAATCCAAAGCATGCC | 57.545 | 40.909 | 15.66 | 0.00 | 0.00 | 4.40 |
455 | 485 | 1.927487 | ACAGAATCCAAAGCATGCCA | 58.073 | 45.000 | 15.66 | 0.00 | 0.00 | 4.92 |
456 | 486 | 2.463752 | ACAGAATCCAAAGCATGCCAT | 58.536 | 42.857 | 15.66 | 0.00 | 0.00 | 4.40 |
459 | 489 | 3.132289 | CAGAATCCAAAGCATGCCATCTT | 59.868 | 43.478 | 15.66 | 0.00 | 0.00 | 2.40 |
460 | 490 | 4.340097 | CAGAATCCAAAGCATGCCATCTTA | 59.660 | 41.667 | 15.66 | 0.00 | 0.00 | 2.10 |
462 | 492 | 5.601313 | AGAATCCAAAGCATGCCATCTTATT | 59.399 | 36.000 | 15.66 | 7.73 | 0.00 | 1.40 |
463 | 493 | 6.779049 | AGAATCCAAAGCATGCCATCTTATTA | 59.221 | 34.615 | 15.66 | 0.00 | 0.00 | 0.98 |
465 | 495 | 4.828939 | TCCAAAGCATGCCATCTTATTAGG | 59.171 | 41.667 | 15.66 | 2.51 | 0.00 | 2.69 |
466 | 496 | 4.021719 | CCAAAGCATGCCATCTTATTAGGG | 60.022 | 45.833 | 15.66 | 2.28 | 0.00 | 3.53 |
467 | 497 | 4.459852 | AAGCATGCCATCTTATTAGGGT | 57.540 | 40.909 | 15.66 | 0.00 | 0.00 | 4.34 |
468 | 498 | 3.759581 | AGCATGCCATCTTATTAGGGTG | 58.240 | 45.455 | 15.66 | 0.00 | 0.00 | 4.61 |
469 | 499 | 3.139025 | AGCATGCCATCTTATTAGGGTGT | 59.861 | 43.478 | 15.66 | 0.00 | 0.00 | 4.16 |
470 | 500 | 3.891366 | GCATGCCATCTTATTAGGGTGTT | 59.109 | 43.478 | 6.36 | 0.00 | 0.00 | 3.32 |
471 | 501 | 4.261741 | GCATGCCATCTTATTAGGGTGTTG | 60.262 | 45.833 | 6.36 | 0.00 | 0.00 | 3.33 |
472 | 502 | 3.897239 | TGCCATCTTATTAGGGTGTTGG | 58.103 | 45.455 | 0.00 | 0.00 | 0.00 | 3.77 |
473 | 503 | 3.268334 | TGCCATCTTATTAGGGTGTTGGT | 59.732 | 43.478 | 0.00 | 0.00 | 0.00 | 3.67 |
474 | 504 | 3.632145 | GCCATCTTATTAGGGTGTTGGTG | 59.368 | 47.826 | 0.00 | 0.00 | 0.00 | 4.17 |
475 | 505 | 4.207165 | CCATCTTATTAGGGTGTTGGTGG | 58.793 | 47.826 | 0.00 | 0.00 | 0.00 | 4.61 |
476 | 506 | 3.359695 | TCTTATTAGGGTGTTGGTGGC | 57.640 | 47.619 | 0.00 | 0.00 | 0.00 | 5.01 |
477 | 507 | 2.025699 | TCTTATTAGGGTGTTGGTGGCC | 60.026 | 50.000 | 0.00 | 0.00 | 0.00 | 5.36 |
478 | 508 | 0.253610 | TATTAGGGTGTTGGTGGCCG | 59.746 | 55.000 | 0.00 | 0.00 | 0.00 | 6.13 |
479 | 509 | 1.493854 | ATTAGGGTGTTGGTGGCCGA | 61.494 | 55.000 | 0.00 | 0.00 | 0.00 | 5.54 |
480 | 510 | 1.493854 | TTAGGGTGTTGGTGGCCGAT | 61.494 | 55.000 | 0.00 | 0.00 | 0.00 | 4.18 |
481 | 511 | 1.906105 | TAGGGTGTTGGTGGCCGATC | 61.906 | 60.000 | 0.00 | 0.00 | 0.00 | 3.69 |
482 | 512 | 2.750237 | GGTGTTGGTGGCCGATCC | 60.750 | 66.667 | 0.00 | 0.75 | 0.00 | 3.36 |
483 | 513 | 2.033448 | GTGTTGGTGGCCGATCCA | 59.967 | 61.111 | 9.59 | 9.59 | 44.18 | 3.41 |
550 | 580 | 9.436957 | ACAATAACAGAGTGAAATACTTGGTAG | 57.563 | 33.333 | 0.00 | 0.00 | 40.53 | 3.18 |
551 | 581 | 9.436957 | CAATAACAGAGTGAAATACTTGGTAGT | 57.563 | 33.333 | 0.00 | 0.00 | 40.53 | 2.73 |
554 | 584 | 6.932947 | ACAGAGTGAAATACTTGGTAGTACC | 58.067 | 40.000 | 12.80 | 12.80 | 40.53 | 3.34 |
555 | 585 | 6.724905 | ACAGAGTGAAATACTTGGTAGTACCT | 59.275 | 38.462 | 20.07 | 2.88 | 40.53 | 3.08 |
558 | 588 | 8.968969 | AGAGTGAAATACTTGGTAGTACCTTAG | 58.031 | 37.037 | 20.07 | 17.76 | 40.53 | 2.18 |
559 | 589 | 8.890410 | AGTGAAATACTTGGTAGTACCTTAGA | 57.110 | 34.615 | 20.07 | 4.20 | 39.59 | 2.10 |
560 | 590 | 8.968969 | AGTGAAATACTTGGTAGTACCTTAGAG | 58.031 | 37.037 | 20.07 | 13.89 | 39.59 | 2.43 |
561 | 591 | 8.196103 | GTGAAATACTTGGTAGTACCTTAGAGG | 58.804 | 40.741 | 20.07 | 3.14 | 39.59 | 3.69 |
607 | 660 | 6.270000 | TCACAACTTGATTCCTTTCCTCTCTA | 59.730 | 38.462 | 0.00 | 0.00 | 0.00 | 2.43 |
623 | 676 | 4.280677 | CCTCTCTATAGGGCAACTGAGAAG | 59.719 | 50.000 | 0.00 | 0.00 | 32.55 | 2.85 |
688 | 753 | 0.994247 | ATTGGACATGGACAGCCTCA | 59.006 | 50.000 | 0.00 | 0.00 | 34.31 | 3.86 |
690 | 755 | 0.325933 | TGGACATGGACAGCCTCAAG | 59.674 | 55.000 | 0.00 | 0.00 | 34.31 | 3.02 |
693 | 758 | 2.027192 | GGACATGGACAGCCTCAAGTTA | 60.027 | 50.000 | 0.00 | 0.00 | 34.31 | 2.24 |
694 | 759 | 3.370953 | GGACATGGACAGCCTCAAGTTAT | 60.371 | 47.826 | 0.00 | 0.00 | 34.31 | 1.89 |
695 | 760 | 4.265073 | GACATGGACAGCCTCAAGTTATT | 58.735 | 43.478 | 0.00 | 0.00 | 34.31 | 1.40 |
696 | 761 | 4.012374 | ACATGGACAGCCTCAAGTTATTG | 58.988 | 43.478 | 0.00 | 0.00 | 37.80 | 1.90 |
697 | 762 | 3.071874 | TGGACAGCCTCAAGTTATTGG | 57.928 | 47.619 | 0.00 | 0.00 | 37.02 | 3.16 |
698 | 763 | 2.642311 | TGGACAGCCTCAAGTTATTGGA | 59.358 | 45.455 | 0.00 | 0.00 | 37.02 | 3.53 |
700 | 765 | 3.559171 | GGACAGCCTCAAGTTATTGGACA | 60.559 | 47.826 | 0.00 | 0.00 | 37.02 | 4.02 |
702 | 767 | 4.012374 | ACAGCCTCAAGTTATTGGACATG | 58.988 | 43.478 | 0.00 | 0.00 | 37.02 | 3.21 |
703 | 768 | 3.379372 | CAGCCTCAAGTTATTGGACATGG | 59.621 | 47.826 | 0.00 | 0.00 | 37.02 | 3.66 |
704 | 769 | 3.266772 | AGCCTCAAGTTATTGGACATGGA | 59.733 | 43.478 | 0.00 | 0.00 | 37.02 | 3.41 |
705 | 770 | 3.378427 | GCCTCAAGTTATTGGACATGGAC | 59.622 | 47.826 | 0.00 | 0.00 | 37.02 | 4.02 |
706 | 771 | 4.588899 | CCTCAAGTTATTGGACATGGACA | 58.411 | 43.478 | 0.00 | 0.00 | 37.02 | 4.02 |
707 | 772 | 4.637534 | CCTCAAGTTATTGGACATGGACAG | 59.362 | 45.833 | 0.00 | 0.00 | 37.02 | 3.51 |
708 | 773 | 4.009675 | TCAAGTTATTGGACATGGACAGC | 58.990 | 43.478 | 0.00 | 0.00 | 37.02 | 4.40 |
709 | 774 | 3.004752 | AGTTATTGGACATGGACAGCC | 57.995 | 47.619 | 0.00 | 0.00 | 0.00 | 4.85 |
710 | 775 | 2.578021 | AGTTATTGGACATGGACAGCCT | 59.422 | 45.455 | 0.00 | 0.00 | 34.31 | 4.58 |
711 | 776 | 2.945668 | GTTATTGGACATGGACAGCCTC | 59.054 | 50.000 | 0.00 | 0.00 | 34.31 | 4.70 |
712 | 777 | 0.994247 | ATTGGACATGGACAGCCTCA | 59.006 | 50.000 | 0.00 | 0.00 | 34.31 | 3.86 |
713 | 778 | 0.770499 | TTGGACATGGACAGCCTCAA | 59.230 | 50.000 | 0.00 | 0.00 | 34.31 | 3.02 |
714 | 779 | 0.994247 | TGGACATGGACAGCCTCAAT | 59.006 | 50.000 | 0.00 | 0.00 | 34.31 | 2.57 |
715 | 780 | 2.195727 | TGGACATGGACAGCCTCAATA | 58.804 | 47.619 | 0.00 | 0.00 | 34.31 | 1.90 |
716 | 781 | 2.575735 | TGGACATGGACAGCCTCAATAA | 59.424 | 45.455 | 0.00 | 0.00 | 34.31 | 1.40 |
717 | 782 | 2.945668 | GGACATGGACAGCCTCAATAAC | 59.054 | 50.000 | 0.00 | 0.00 | 34.31 | 1.89 |
718 | 783 | 3.609853 | GACATGGACAGCCTCAATAACA | 58.390 | 45.455 | 0.00 | 0.00 | 34.31 | 2.41 |
719 | 784 | 3.614092 | ACATGGACAGCCTCAATAACAG | 58.386 | 45.455 | 0.00 | 0.00 | 34.31 | 3.16 |
720 | 785 | 3.264193 | ACATGGACAGCCTCAATAACAGA | 59.736 | 43.478 | 0.00 | 0.00 | 34.31 | 3.41 |
721 | 786 | 3.616956 | TGGACAGCCTCAATAACAGAG | 57.383 | 47.619 | 0.00 | 0.00 | 34.31 | 3.35 |
722 | 787 | 2.906389 | TGGACAGCCTCAATAACAGAGT | 59.094 | 45.455 | 0.00 | 0.00 | 34.31 | 3.24 |
723 | 788 | 3.265791 | GGACAGCCTCAATAACAGAGTG | 58.734 | 50.000 | 0.00 | 0.00 | 0.00 | 3.51 |
724 | 789 | 3.055819 | GGACAGCCTCAATAACAGAGTGA | 60.056 | 47.826 | 0.00 | 0.00 | 0.00 | 3.41 |
725 | 790 | 4.563580 | GGACAGCCTCAATAACAGAGTGAA | 60.564 | 45.833 | 0.00 | 0.00 | 30.27 | 3.18 |
726 | 791 | 4.973168 | ACAGCCTCAATAACAGAGTGAAA | 58.027 | 39.130 | 0.00 | 0.00 | 30.27 | 2.69 |
734 | 799 | 7.094463 | CCTCAATAACAGAGTGAAATTCTTGCT | 60.094 | 37.037 | 0.00 | 0.00 | 30.27 | 3.91 |
772 | 840 | 1.004918 | AGCTTTCGCGCACTAACCT | 60.005 | 52.632 | 8.75 | 0.00 | 42.32 | 3.50 |
774 | 842 | 1.967597 | GCTTTCGCGCACTAACCTCC | 61.968 | 60.000 | 8.75 | 0.00 | 0.00 | 4.30 |
775 | 843 | 0.389948 | CTTTCGCGCACTAACCTCCT | 60.390 | 55.000 | 8.75 | 0.00 | 0.00 | 3.69 |
777 | 845 | 1.248785 | TTCGCGCACTAACCTCCTCT | 61.249 | 55.000 | 8.75 | 0.00 | 0.00 | 3.69 |
778 | 846 | 1.517257 | CGCGCACTAACCTCCTCTG | 60.517 | 63.158 | 8.75 | 0.00 | 0.00 | 3.35 |
779 | 847 | 1.811679 | GCGCACTAACCTCCTCTGC | 60.812 | 63.158 | 0.30 | 0.00 | 0.00 | 4.26 |
780 | 848 | 1.893786 | CGCACTAACCTCCTCTGCT | 59.106 | 57.895 | 0.00 | 0.00 | 0.00 | 4.24 |
781 | 849 | 0.179124 | CGCACTAACCTCCTCTGCTC | 60.179 | 60.000 | 0.00 | 0.00 | 0.00 | 4.26 |
782 | 850 | 1.190643 | GCACTAACCTCCTCTGCTCT | 58.809 | 55.000 | 0.00 | 0.00 | 0.00 | 4.09 |
865 | 1009 | 3.335786 | TGTAACTGTTCCTAGGAGGGAGA | 59.664 | 47.826 | 12.26 | 0.00 | 35.59 | 3.71 |
867 | 1011 | 1.289530 | ACTGTTCCTAGGAGGGAGAGG | 59.710 | 57.143 | 12.26 | 2.51 | 38.55 | 3.69 |
884 | 1028 | 2.110721 | AGAGGGCACAAGGAAGGATTTT | 59.889 | 45.455 | 0.00 | 0.00 | 0.00 | 1.82 |
886 | 1030 | 2.110721 | AGGGCACAAGGAAGGATTTTCT | 59.889 | 45.455 | 0.00 | 0.00 | 0.00 | 2.52 |
889 | 1033 | 2.493675 | GCACAAGGAAGGATTTTCTCCC | 59.506 | 50.000 | 0.00 | 0.00 | 46.27 | 4.30 |
891 | 1035 | 3.760684 | CACAAGGAAGGATTTTCTCCCAG | 59.239 | 47.826 | 0.00 | 0.00 | 46.27 | 4.45 |
892 | 1036 | 3.657727 | ACAAGGAAGGATTTTCTCCCAGA | 59.342 | 43.478 | 0.00 | 0.00 | 46.27 | 3.86 |
893 | 1037 | 4.263683 | ACAAGGAAGGATTTTCTCCCAGAG | 60.264 | 45.833 | 0.00 | 0.00 | 46.27 | 3.35 |
895 | 1039 | 3.919554 | AGGAAGGATTTTCTCCCAGAGTT | 59.080 | 43.478 | 0.00 | 0.00 | 46.27 | 3.01 |
896 | 1040 | 4.355287 | AGGAAGGATTTTCTCCCAGAGTTT | 59.645 | 41.667 | 0.00 | 0.00 | 46.27 | 2.66 |
897 | 1041 | 4.702612 | GGAAGGATTTTCTCCCAGAGTTTC | 59.297 | 45.833 | 0.00 | 0.00 | 46.27 | 2.78 |
898 | 1042 | 4.308526 | AGGATTTTCTCCCAGAGTTTCC | 57.691 | 45.455 | 0.00 | 0.00 | 46.27 | 3.13 |
944 | 1088 | 0.257039 | CAAATCCCTACCTGCCTGCT | 59.743 | 55.000 | 0.00 | 0.00 | 0.00 | 4.24 |
955 | 1099 | 2.183555 | GCCTGCTGCATTTGCTCC | 59.816 | 61.111 | 1.31 | 0.00 | 42.66 | 4.70 |
997 | 1145 | 2.136229 | GCCCCCATCCAGCCAAATC | 61.136 | 63.158 | 0.00 | 0.00 | 0.00 | 2.17 |
1023 | 1171 | 3.071457 | ACTTCTTCTTGGCCATTTTTGGG | 59.929 | 43.478 | 6.09 | 0.00 | 0.00 | 4.12 |
1024 | 1172 | 2.688477 | TCTTCTTGGCCATTTTTGGGT | 58.312 | 42.857 | 6.09 | 0.00 | 0.00 | 4.51 |
1025 | 1173 | 2.632512 | TCTTCTTGGCCATTTTTGGGTC | 59.367 | 45.455 | 6.09 | 0.00 | 0.00 | 4.46 |
1272 | 1469 | 2.502295 | CCAAAGCTCTGCTCTTTCTGT | 58.498 | 47.619 | 0.00 | 0.00 | 38.25 | 3.41 |
1363 | 1590 | 4.216257 | TGATTGCTCAAGCTTACTGGTTTC | 59.784 | 41.667 | 0.00 | 0.00 | 42.66 | 2.78 |
1374 | 1601 | 4.439289 | GCTTACTGGTTTCATTGGCATCTC | 60.439 | 45.833 | 0.00 | 0.00 | 0.00 | 2.75 |
1393 | 1641 | 5.247507 | TCTCCAACAATTTCTTGTGTGTG | 57.752 | 39.130 | 0.00 | 0.00 | 44.83 | 3.82 |
1394 | 1642 | 4.704540 | TCTCCAACAATTTCTTGTGTGTGT | 59.295 | 37.500 | 0.00 | 0.00 | 44.83 | 3.72 |
1398 | 1646 | 4.782019 | ACAATTTCTTGTGTGTGTGTGT | 57.218 | 36.364 | 0.00 | 0.00 | 43.92 | 3.72 |
1421 | 2286 | 1.227438 | GTGTGTGTGTGGCGGTAGT | 60.227 | 57.895 | 0.00 | 0.00 | 0.00 | 2.73 |
1432 | 2297 | 3.893200 | TGTGGCGGTAGTAGTAGCATTAT | 59.107 | 43.478 | 7.51 | 0.00 | 0.00 | 1.28 |
1435 | 2300 | 5.860716 | GTGGCGGTAGTAGTAGCATTATAAC | 59.139 | 44.000 | 7.51 | 0.00 | 0.00 | 1.89 |
1441 | 2311 | 9.059485 | CGGTAGTAGTAGCATTATAACGAATTC | 57.941 | 37.037 | 7.51 | 0.00 | 0.00 | 2.17 |
1649 | 2538 | 1.229625 | ACCAGAGGCACCATCCAGA | 60.230 | 57.895 | 0.00 | 0.00 | 0.00 | 3.86 |
1650 | 2539 | 1.270414 | ACCAGAGGCACCATCCAGAG | 61.270 | 60.000 | 0.00 | 0.00 | 0.00 | 3.35 |
1651 | 2540 | 1.525923 | CAGAGGCACCATCCAGAGG | 59.474 | 63.158 | 0.00 | 0.00 | 0.00 | 3.69 |
1652 | 2541 | 1.081833 | AGAGGCACCATCCAGAGGT | 59.918 | 57.895 | 0.00 | 0.00 | 40.85 | 3.85 |
1653 | 2542 | 0.548682 | AGAGGCACCATCCAGAGGTT | 60.549 | 55.000 | 0.00 | 0.00 | 37.23 | 3.50 |
1654 | 2543 | 0.107459 | GAGGCACCATCCAGAGGTTC | 60.107 | 60.000 | 0.00 | 0.00 | 37.23 | 3.62 |
1655 | 2544 | 1.450312 | GGCACCATCCAGAGGTTCG | 60.450 | 63.158 | 0.00 | 0.00 | 37.23 | 3.95 |
1656 | 2545 | 1.296715 | GCACCATCCAGAGGTTCGT | 59.703 | 57.895 | 0.00 | 0.00 | 37.23 | 3.85 |
1657 | 2546 | 0.741221 | GCACCATCCAGAGGTTCGTC | 60.741 | 60.000 | 0.00 | 0.00 | 37.23 | 4.20 |
1658 | 2547 | 0.898320 | CACCATCCAGAGGTTCGTCT | 59.102 | 55.000 | 0.00 | 0.00 | 37.23 | 4.18 |
1659 | 2548 | 1.134965 | CACCATCCAGAGGTTCGTCTC | 60.135 | 57.143 | 0.00 | 0.00 | 37.23 | 3.36 |
1660 | 2549 | 0.101399 | CCATCCAGAGGTTCGTCTCG | 59.899 | 60.000 | 0.00 | 0.00 | 38.71 | 4.04 |
1661 | 2550 | 0.811915 | CATCCAGAGGTTCGTCTCGT | 59.188 | 55.000 | 0.00 | 0.00 | 38.71 | 4.18 |
1662 | 2551 | 0.811915 | ATCCAGAGGTTCGTCTCGTG | 59.188 | 55.000 | 0.00 | 0.00 | 38.71 | 4.35 |
1663 | 2552 | 0.536687 | TCCAGAGGTTCGTCTCGTGT | 60.537 | 55.000 | 0.00 | 0.00 | 38.71 | 4.49 |
1664 | 2553 | 0.314302 | CCAGAGGTTCGTCTCGTGTT | 59.686 | 55.000 | 0.00 | 0.00 | 38.71 | 3.32 |
1665 | 2554 | 1.269621 | CCAGAGGTTCGTCTCGTGTTT | 60.270 | 52.381 | 0.00 | 0.00 | 38.71 | 2.83 |
1666 | 2555 | 2.030540 | CCAGAGGTTCGTCTCGTGTTTA | 60.031 | 50.000 | 0.00 | 0.00 | 38.71 | 2.01 |
1667 | 2556 | 3.367087 | CCAGAGGTTCGTCTCGTGTTTAT | 60.367 | 47.826 | 0.00 | 0.00 | 38.71 | 1.40 |
1668 | 2557 | 4.235360 | CAGAGGTTCGTCTCGTGTTTATT | 58.765 | 43.478 | 0.00 | 0.00 | 38.71 | 1.40 |
1669 | 2558 | 4.684703 | CAGAGGTTCGTCTCGTGTTTATTT | 59.315 | 41.667 | 0.00 | 0.00 | 38.71 | 1.40 |
1670 | 2559 | 4.684703 | AGAGGTTCGTCTCGTGTTTATTTG | 59.315 | 41.667 | 0.00 | 0.00 | 38.71 | 2.32 |
1671 | 2560 | 4.374399 | AGGTTCGTCTCGTGTTTATTTGT | 58.626 | 39.130 | 0.00 | 0.00 | 0.00 | 2.83 |
1672 | 2561 | 4.446719 | AGGTTCGTCTCGTGTTTATTTGTC | 59.553 | 41.667 | 0.00 | 0.00 | 0.00 | 3.18 |
1673 | 2562 | 4.209703 | GGTTCGTCTCGTGTTTATTTGTCA | 59.790 | 41.667 | 0.00 | 0.00 | 0.00 | 3.58 |
1674 | 2563 | 5.363517 | GTTCGTCTCGTGTTTATTTGTCAG | 58.636 | 41.667 | 0.00 | 0.00 | 0.00 | 3.51 |
1675 | 2564 | 3.427528 | TCGTCTCGTGTTTATTTGTCAGC | 59.572 | 43.478 | 0.00 | 0.00 | 0.00 | 4.26 |
1676 | 2565 | 3.183574 | CGTCTCGTGTTTATTTGTCAGCA | 59.816 | 43.478 | 0.00 | 0.00 | 0.00 | 4.41 |
1677 | 2566 | 4.664139 | CGTCTCGTGTTTATTTGTCAGCAG | 60.664 | 45.833 | 0.00 | 0.00 | 0.00 | 4.24 |
1678 | 2567 | 4.211374 | GTCTCGTGTTTATTTGTCAGCAGT | 59.789 | 41.667 | 0.00 | 0.00 | 0.00 | 4.40 |
1679 | 2568 | 4.211164 | TCTCGTGTTTATTTGTCAGCAGTG | 59.789 | 41.667 | 0.00 | 0.00 | 0.00 | 3.66 |
1680 | 2569 | 3.874543 | TCGTGTTTATTTGTCAGCAGTGT | 59.125 | 39.130 | 0.00 | 0.00 | 0.00 | 3.55 |
1681 | 2570 | 4.025229 | TCGTGTTTATTTGTCAGCAGTGTC | 60.025 | 41.667 | 0.00 | 0.00 | 0.00 | 3.67 |
1682 | 2571 | 4.211389 | GTGTTTATTTGTCAGCAGTGTCG | 58.789 | 43.478 | 0.00 | 0.00 | 0.00 | 4.35 |
1683 | 2572 | 3.249799 | TGTTTATTTGTCAGCAGTGTCGG | 59.750 | 43.478 | 0.00 | 0.00 | 0.00 | 4.79 |
1684 | 2573 | 1.438651 | TATTTGTCAGCAGTGTCGGC | 58.561 | 50.000 | 0.00 | 0.00 | 0.00 | 5.54 |
1685 | 2574 | 1.568612 | ATTTGTCAGCAGTGTCGGCG | 61.569 | 55.000 | 0.00 | 0.00 | 36.08 | 6.46 |
1686 | 2575 | 4.662961 | TGTCAGCAGTGTCGGCGG | 62.663 | 66.667 | 7.21 | 0.00 | 36.08 | 6.13 |
1687 | 2576 | 4.664677 | GTCAGCAGTGTCGGCGGT | 62.665 | 66.667 | 7.21 | 0.00 | 36.08 | 5.68 |
1688 | 2577 | 4.662961 | TCAGCAGTGTCGGCGGTG | 62.663 | 66.667 | 7.21 | 0.78 | 36.08 | 4.94 |
1699 | 2588 | 2.676471 | GGCGGTGGTGGCTCATTT | 60.676 | 61.111 | 0.00 | 0.00 | 0.00 | 2.32 |
1700 | 2589 | 2.275380 | GGCGGTGGTGGCTCATTTT | 61.275 | 57.895 | 0.00 | 0.00 | 0.00 | 1.82 |
1701 | 2590 | 1.080569 | GCGGTGGTGGCTCATTTTG | 60.081 | 57.895 | 0.00 | 0.00 | 0.00 | 2.44 |
1702 | 2591 | 1.080569 | CGGTGGTGGCTCATTTTGC | 60.081 | 57.895 | 0.00 | 0.00 | 0.00 | 3.68 |
1703 | 2592 | 1.080569 | GGTGGTGGCTCATTTTGCG | 60.081 | 57.895 | 0.00 | 0.00 | 0.00 | 4.85 |
1704 | 2593 | 1.659794 | GTGGTGGCTCATTTTGCGT | 59.340 | 52.632 | 0.00 | 0.00 | 0.00 | 5.24 |
1705 | 2594 | 0.664166 | GTGGTGGCTCATTTTGCGTG | 60.664 | 55.000 | 0.00 | 0.00 | 0.00 | 5.34 |
1706 | 2595 | 1.080569 | GGTGGCTCATTTTGCGTGG | 60.081 | 57.895 | 0.00 | 0.00 | 0.00 | 4.94 |
1707 | 2596 | 1.659794 | GTGGCTCATTTTGCGTGGT | 59.340 | 52.632 | 0.00 | 0.00 | 0.00 | 4.16 |
1708 | 2597 | 0.664166 | GTGGCTCATTTTGCGTGGTG | 60.664 | 55.000 | 0.00 | 0.00 | 0.00 | 4.17 |
1709 | 2598 | 1.106351 | TGGCTCATTTTGCGTGGTGT | 61.106 | 50.000 | 0.00 | 0.00 | 0.00 | 4.16 |
1710 | 2599 | 0.031994 | GGCTCATTTTGCGTGGTGTT | 59.968 | 50.000 | 0.00 | 0.00 | 0.00 | 3.32 |
1711 | 2600 | 1.130955 | GCTCATTTTGCGTGGTGTTG | 58.869 | 50.000 | 0.00 | 0.00 | 0.00 | 3.33 |
1712 | 2601 | 1.769733 | CTCATTTTGCGTGGTGTTGG | 58.230 | 50.000 | 0.00 | 0.00 | 0.00 | 3.77 |
1713 | 2602 | 0.249238 | TCATTTTGCGTGGTGTTGGC | 60.249 | 50.000 | 0.00 | 0.00 | 0.00 | 4.52 |
1714 | 2603 | 0.529337 | CATTTTGCGTGGTGTTGGCA | 60.529 | 50.000 | 0.00 | 0.00 | 34.35 | 4.92 |
1715 | 2604 | 0.392336 | ATTTTGCGTGGTGTTGGCAT | 59.608 | 45.000 | 0.00 | 0.00 | 36.44 | 4.40 |
1716 | 2605 | 0.176680 | TTTTGCGTGGTGTTGGCATT | 59.823 | 45.000 | 0.00 | 0.00 | 36.44 | 3.56 |
1797 | 2802 | 1.969923 | GAGATACTGCAGCTCCAGGAT | 59.030 | 52.381 | 15.27 | 0.53 | 39.09 | 3.24 |
1849 | 2854 | 4.318332 | TGGACTCAAATCTGTAAGTGCAG | 58.682 | 43.478 | 0.00 | 0.00 | 35.53 | 4.41 |
1856 | 2861 | 7.497249 | ACTCAAATCTGTAAGTGCAGGATTATC | 59.503 | 37.037 | 0.00 | 0.00 | 37.12 | 1.75 |
1859 | 2864 | 7.976135 | AATCTGTAAGTGCAGGATTATCATC | 57.024 | 36.000 | 0.00 | 0.00 | 37.12 | 2.92 |
1862 | 2875 | 8.427902 | TCTGTAAGTGCAGGATTATCATCTAT | 57.572 | 34.615 | 0.00 | 0.00 | 37.12 | 1.98 |
1864 | 2877 | 9.149225 | CTGTAAGTGCAGGATTATCATCTATTC | 57.851 | 37.037 | 0.00 | 0.00 | 33.11 | 1.75 |
1976 | 3011 | 1.409427 | GACTCCTCCATGGAAGGTACG | 59.591 | 57.143 | 17.00 | 13.24 | 45.63 | 3.67 |
1977 | 3012 | 1.273098 | ACTCCTCCATGGAAGGTACGT | 60.273 | 52.381 | 17.00 | 13.76 | 45.63 | 3.57 |
1978 | 3013 | 2.024655 | ACTCCTCCATGGAAGGTACGTA | 60.025 | 50.000 | 17.00 | 0.00 | 45.63 | 3.57 |
1979 | 3014 | 3.231818 | CTCCTCCATGGAAGGTACGTAT | 58.768 | 50.000 | 17.00 | 0.00 | 45.63 | 3.06 |
1980 | 3015 | 4.141088 | ACTCCTCCATGGAAGGTACGTATA | 60.141 | 45.833 | 17.00 | 1.40 | 45.63 | 1.47 |
1981 | 3016 | 4.806892 | TCCTCCATGGAAGGTACGTATAA | 58.193 | 43.478 | 17.00 | 0.00 | 42.94 | 0.98 |
1982 | 3017 | 4.831155 | TCCTCCATGGAAGGTACGTATAAG | 59.169 | 45.833 | 17.00 | 0.00 | 42.94 | 1.73 |
1983 | 3018 | 4.831155 | CCTCCATGGAAGGTACGTATAAGA | 59.169 | 45.833 | 17.00 | 0.00 | 38.35 | 2.10 |
2009 | 3072 | 3.316308 | GCTACCGATTTCATTCCTTGCAT | 59.684 | 43.478 | 0.00 | 0.00 | 0.00 | 3.96 |
2019 | 3082 | 3.193903 | TCATTCCTTGCATGGTCACAATG | 59.806 | 43.478 | 17.54 | 17.73 | 0.00 | 2.82 |
2037 | 3100 | 7.173218 | GTCACAATGTCTACCAAGAAATCTTCA | 59.827 | 37.037 | 0.00 | 0.00 | 33.11 | 3.02 |
2152 | 3315 | 5.011125 | GCTGTGGTAGTACATGATAGTGGAT | 59.989 | 44.000 | 0.00 | 0.00 | 0.00 | 3.41 |
2166 | 3329 | 9.725019 | CATGATAGTGGATGGCTTAAAAGTATA | 57.275 | 33.333 | 0.00 | 0.00 | 0.00 | 1.47 |
2188 | 3390 | 1.694844 | TATGGTTGATGCATGGCCTG | 58.305 | 50.000 | 2.46 | 0.34 | 0.00 | 4.85 |
2198 | 3401 | 2.378038 | TGCATGGCCTGTCTTTATTCC | 58.622 | 47.619 | 3.32 | 0.00 | 0.00 | 3.01 |
2213 | 3419 | 9.403583 | TGTCTTTATTCCTGTTTATACATTCCC | 57.596 | 33.333 | 0.00 | 0.00 | 32.86 | 3.97 |
2214 | 3420 | 9.628500 | GTCTTTATTCCTGTTTATACATTCCCT | 57.372 | 33.333 | 0.00 | 0.00 | 32.86 | 4.20 |
2300 | 3512 | 1.670811 | AGTGCACAAGTTTTCAGGACG | 59.329 | 47.619 | 21.04 | 0.00 | 0.00 | 4.79 |
2311 | 3523 | 1.710013 | TTCAGGACGATTCGCAACTC | 58.290 | 50.000 | 5.86 | 0.00 | 0.00 | 3.01 |
2416 | 3632 | 7.926674 | TCCGTCGATAAATATACCTGACATA | 57.073 | 36.000 | 0.00 | 0.00 | 0.00 | 2.29 |
2450 | 3666 | 3.691118 | GCAGCAAGACAAGTTATGATCCA | 59.309 | 43.478 | 0.00 | 0.00 | 0.00 | 3.41 |
2494 | 3710 | 2.635427 | TGTACAAGGTATGGCTGTGTCA | 59.365 | 45.455 | 0.00 | 0.00 | 0.00 | 3.58 |
2619 | 3848 | 2.996621 | GCAGAATGACACTGGAGTACAC | 59.003 | 50.000 | 0.00 | 0.00 | 39.69 | 2.90 |
2642 | 3871 | 7.011482 | ACACGAGGAGCATTCAAAGTATTTATC | 59.989 | 37.037 | 0.00 | 0.00 | 35.03 | 1.75 |
2683 | 3913 | 7.466746 | TTCTCCATGATGTTTTCCTTAAAGG | 57.533 | 36.000 | 0.00 | 0.00 | 36.46 | 3.11 |
2688 | 3918 | 6.536224 | CCATGATGTTTTCCTTAAAGGCATTC | 59.464 | 38.462 | 0.00 | 0.00 | 34.61 | 2.67 |
2888 | 4143 | 9.571816 | TTTTGGAATTTCCTTTTTATCTGCATT | 57.428 | 25.926 | 16.25 | 0.00 | 37.46 | 3.56 |
2889 | 4144 | 8.550710 | TTGGAATTTCCTTTTTATCTGCATTG | 57.449 | 30.769 | 16.25 | 0.00 | 37.46 | 2.82 |
2890 | 4145 | 6.594937 | TGGAATTTCCTTTTTATCTGCATTGC | 59.405 | 34.615 | 16.25 | 0.46 | 37.46 | 3.56 |
2915 | 4171 | 7.201750 | GCGGTAAGGTGTGAATGGATTTATTTA | 60.202 | 37.037 | 0.00 | 0.00 | 0.00 | 1.40 |
3030 | 4286 | 4.202441 | CTGTAGCTGCTGGGTTTGATATT | 58.798 | 43.478 | 13.43 | 0.00 | 0.00 | 1.28 |
3101 | 4401 | 5.580691 | CACGCTTGATGTAAGTATCTTTCCA | 59.419 | 40.000 | 0.00 | 0.00 | 38.70 | 3.53 |
3113 | 4413 | 9.778741 | GTAAGTATCTTTCCATTGGATATGACA | 57.221 | 33.333 | 6.15 | 0.00 | 0.00 | 3.58 |
3163 | 4463 | 1.843992 | CTGCTGATTAATTTGCGCCC | 58.156 | 50.000 | 4.18 | 0.00 | 0.00 | 6.13 |
3210 | 4510 | 3.793797 | TTGCATTCCATTCTGATGCTG | 57.206 | 42.857 | 8.73 | 0.00 | 38.88 | 4.41 |
3212 | 4512 | 2.949644 | TGCATTCCATTCTGATGCTGAG | 59.050 | 45.455 | 8.73 | 0.00 | 38.88 | 3.35 |
3300 | 4761 | 4.935205 | AGTATCAAATCTGTTGCGCTAACA | 59.065 | 37.500 | 19.42 | 19.42 | 46.62 | 2.41 |
3301 | 4762 | 3.536158 | TCAAATCTGTTGCGCTAACAC | 57.464 | 42.857 | 17.55 | 6.91 | 44.07 | 3.32 |
3302 | 4763 | 2.096466 | TCAAATCTGTTGCGCTAACACG | 60.096 | 45.455 | 17.55 | 14.25 | 44.07 | 4.49 |
3305 | 4766 | 0.856641 | TCTGTTGCGCTAACACGTTC | 59.143 | 50.000 | 17.55 | 0.00 | 44.07 | 3.95 |
3306 | 4767 | 0.579630 | CTGTTGCGCTAACACGTTCA | 59.420 | 50.000 | 17.55 | 0.00 | 44.07 | 3.18 |
3307 | 4768 | 1.194547 | CTGTTGCGCTAACACGTTCAT | 59.805 | 47.619 | 17.55 | 0.00 | 44.07 | 2.57 |
3310 | 4771 | 1.503294 | TGCGCTAACACGTTCATTGA | 58.497 | 45.000 | 9.73 | 0.00 | 34.88 | 2.57 |
3335 | 4796 | 6.801539 | TTGCTATCAATTAATAGGAAGGCG | 57.198 | 37.500 | 0.00 | 0.00 | 35.44 | 5.52 |
3407 | 4871 | 3.760684 | GGATTGATGTTGAACCTGAAGCT | 59.239 | 43.478 | 0.00 | 0.00 | 0.00 | 3.74 |
3419 | 4883 | 1.404717 | CCTGAAGCTATGTCTGCACGT | 60.405 | 52.381 | 0.00 | 0.00 | 0.00 | 4.49 |
3556 | 5077 | 5.012251 | TGGTGCCATGACTTAACTTACTACA | 59.988 | 40.000 | 0.00 | 0.00 | 0.00 | 2.74 |
3584 | 5107 | 8.417106 | TCCAAATGCTCACTTTGTTTGTATTTA | 58.583 | 29.630 | 0.00 | 0.00 | 32.83 | 1.40 |
3629 | 5152 | 7.870445 | AGCGGATTTTGTATGTTTTGTATTTGT | 59.130 | 29.630 | 0.00 | 0.00 | 0.00 | 2.83 |
3630 | 5153 | 9.130312 | GCGGATTTTGTATGTTTTGTATTTGTA | 57.870 | 29.630 | 0.00 | 0.00 | 0.00 | 2.41 |
3783 | 5310 | 4.757657 | TGCCTTCTGCTTATTTTTACACGA | 59.242 | 37.500 | 0.00 | 0.00 | 42.00 | 4.35 |
3791 | 5320 | 9.176181 | TCTGCTTATTTTTACACGACAATTTTC | 57.824 | 29.630 | 0.00 | 0.00 | 0.00 | 2.29 |
3804 | 5361 | 7.747357 | ACACGACAATTTTCCGTTATTATTGTC | 59.253 | 33.333 | 13.46 | 13.46 | 45.71 | 3.18 |
3898 | 5458 | 4.873746 | TTACTGTGAGAGAGAACTTGGG | 57.126 | 45.455 | 0.00 | 0.00 | 0.00 | 4.12 |
4015 | 5593 | 1.500303 | TGGGCAATGCATCCTCCTTAT | 59.500 | 47.619 | 7.79 | 0.00 | 0.00 | 1.73 |
6459 | 9795 | 2.995283 | TCTGTGGATCAGCTGAATTGG | 58.005 | 47.619 | 22.50 | 9.20 | 43.32 | 3.16 |
6467 | 9803 | 4.038402 | GGATCAGCTGAATTGGTTTATGGG | 59.962 | 45.833 | 22.50 | 0.00 | 0.00 | 4.00 |
6542 | 9879 | 8.210946 | CCTTTTTAGGGGAAAATGAGAGTTTTT | 58.789 | 33.333 | 0.00 | 0.00 | 36.89 | 1.94 |
6568 | 9905 | 1.072331 | ACAAGAGAATCCAACCGCTGT | 59.928 | 47.619 | 0.00 | 0.00 | 33.66 | 4.40 |
6591 | 9928 | 3.009143 | GGGTGAACTGGTTCTTCCATAGT | 59.991 | 47.826 | 19.93 | 0.00 | 46.12 | 2.12 |
6595 | 9932 | 6.040504 | GGTGAACTGGTTCTTCCATAGTTTTT | 59.959 | 38.462 | 13.54 | 0.00 | 46.12 | 1.94 |
6658 | 9995 | 0.041047 | TGACAGTACGACGAACACCG | 60.041 | 55.000 | 0.00 | 0.00 | 45.44 | 4.94 |
6662 | 9999 | 0.667993 | AGTACGACGAACACCGGAAA | 59.332 | 50.000 | 9.46 | 0.00 | 43.93 | 3.13 |
6663 | 10000 | 1.270550 | AGTACGACGAACACCGGAAAT | 59.729 | 47.619 | 9.46 | 0.00 | 43.93 | 2.17 |
6664 | 10001 | 2.487762 | AGTACGACGAACACCGGAAATA | 59.512 | 45.455 | 9.46 | 0.00 | 43.93 | 1.40 |
6676 | 10016 | 9.012448 | CGAACACCGGAAATAATAAAAATTACC | 57.988 | 33.333 | 9.46 | 0.00 | 33.91 | 2.85 |
6690 | 10030 | 9.813826 | AATAAAAATTACCTCCAGATCCATAGG | 57.186 | 33.333 | 3.83 | 3.83 | 35.14 | 2.57 |
6711 | 10051 | 1.200716 | CCACCTAGCGACGACTACAAA | 59.799 | 52.381 | 0.00 | 0.00 | 0.00 | 2.83 |
6722 | 10062 | 1.455786 | CGACTACAAACACTGAAGCGG | 59.544 | 52.381 | 0.00 | 0.00 | 0.00 | 5.52 |
6753 | 10093 | 3.227276 | CGCCGTCATAGCCCCTCT | 61.227 | 66.667 | 0.00 | 0.00 | 0.00 | 3.69 |
6756 | 10109 | 1.403687 | GCCGTCATAGCCCCTCTCTT | 61.404 | 60.000 | 0.00 | 0.00 | 0.00 | 2.85 |
6782 | 10135 | 0.454196 | GTCGGGCACAACTTGTTGTT | 59.546 | 50.000 | 15.46 | 0.53 | 39.92 | 2.83 |
6795 | 10148 | 5.097742 | ACTTGTTGTTGGATATGATCGGA | 57.902 | 39.130 | 0.00 | 0.00 | 0.00 | 4.55 |
6802 | 10155 | 5.116180 | TGTTGGATATGATCGGAAAGTCAC | 58.884 | 41.667 | 0.00 | 0.00 | 0.00 | 3.67 |
6814 | 10167 | 0.396811 | AAAGTCACCGTGCTAAGGCT | 59.603 | 50.000 | 0.00 | 0.00 | 39.59 | 4.58 |
6847 | 10200 | 0.678366 | ACACCAGAACAACAACCGCA | 60.678 | 50.000 | 0.00 | 0.00 | 0.00 | 5.69 |
6853 | 10206 | 0.042448 | GAACAACAACCGCAGTCGAC | 60.042 | 55.000 | 7.70 | 7.70 | 38.10 | 4.20 |
6886 | 10239 | 7.184067 | ACGTAGATTAAAAGGATCCAACTCT | 57.816 | 36.000 | 15.82 | 9.15 | 0.00 | 3.24 |
6896 | 10249 | 3.525199 | AGGATCCAACTCTAAGGCACATT | 59.475 | 43.478 | 15.82 | 0.00 | 0.00 | 2.71 |
7101 | 10464 | 8.389779 | ACATGTGTGAATACATAGACAAACAA | 57.610 | 30.769 | 0.00 | 0.00 | 39.17 | 2.83 |
7123 | 10486 | 6.381420 | ACAAAGTGTCACTAGTATGCCTCTAT | 59.619 | 38.462 | 5.77 | 0.00 | 0.00 | 1.98 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
0 | 1 | 4.269183 | AGATAGATCTGATCTAGGGCGTG | 58.731 | 47.826 | 26.31 | 0.00 | 44.44 | 5.34 |
1 | 2 | 4.584638 | AGATAGATCTGATCTAGGGCGT | 57.415 | 45.455 | 26.31 | 13.57 | 44.44 | 5.68 |
42 | 43 | 0.979709 | CACCAGGAGGAGAGATGCCA | 60.980 | 60.000 | 0.00 | 0.00 | 38.69 | 4.92 |
56 | 57 | 2.981909 | CACCAGCACCAGCACCAG | 60.982 | 66.667 | 0.00 | 0.00 | 45.49 | 4.00 |
58 | 59 | 4.962836 | AGCACCAGCACCAGCACC | 62.963 | 66.667 | 0.00 | 0.00 | 45.49 | 5.01 |
59 | 60 | 3.667282 | CAGCACCAGCACCAGCAC | 61.667 | 66.667 | 0.00 | 0.00 | 45.49 | 4.40 |
62 | 63 | 2.416244 | CTTTGCAGCACCAGCACCAG | 62.416 | 60.000 | 0.00 | 0.00 | 45.49 | 4.00 |
63 | 64 | 2.441717 | TTTGCAGCACCAGCACCA | 60.442 | 55.556 | 0.00 | 0.00 | 45.49 | 4.17 |
64 | 65 | 1.737355 | TTCTTTGCAGCACCAGCACC | 61.737 | 55.000 | 0.00 | 0.00 | 45.49 | 5.01 |
65 | 66 | 0.316204 | ATTCTTTGCAGCACCAGCAC | 59.684 | 50.000 | 0.00 | 0.00 | 45.49 | 4.40 |
66 | 67 | 1.908344 | TATTCTTTGCAGCACCAGCA | 58.092 | 45.000 | 0.00 | 0.00 | 45.49 | 4.41 |
67 | 68 | 4.336433 | TCTTATATTCTTTGCAGCACCAGC | 59.664 | 41.667 | 0.00 | 0.00 | 42.56 | 4.85 |
108 | 109 | 7.011016 | CCTTTTAATTTGGTGGTTGAGTGTTTC | 59.989 | 37.037 | 0.00 | 0.00 | 0.00 | 2.78 |
110 | 111 | 6.345298 | CCTTTTAATTTGGTGGTTGAGTGTT | 58.655 | 36.000 | 0.00 | 0.00 | 0.00 | 3.32 |
139 | 140 | 2.027003 | TGCTTTGCTTTGCTTTGCTT | 57.973 | 40.000 | 0.00 | 0.00 | 0.00 | 3.91 |
140 | 141 | 2.027003 | TTGCTTTGCTTTGCTTTGCT | 57.973 | 40.000 | 0.00 | 0.00 | 0.00 | 3.91 |
141 | 142 | 2.828874 | TTTGCTTTGCTTTGCTTTGC | 57.171 | 40.000 | 0.00 | 0.00 | 0.00 | 3.68 |
142 | 143 | 4.972201 | TCTTTTTGCTTTGCTTTGCTTTG | 58.028 | 34.783 | 0.00 | 0.00 | 0.00 | 2.77 |
143 | 144 | 5.625921 | TTCTTTTTGCTTTGCTTTGCTTT | 57.374 | 30.435 | 0.00 | 0.00 | 0.00 | 3.51 |
144 | 145 | 4.437794 | GCTTCTTTTTGCTTTGCTTTGCTT | 60.438 | 37.500 | 0.00 | 0.00 | 0.00 | 3.91 |
145 | 146 | 3.064408 | GCTTCTTTTTGCTTTGCTTTGCT | 59.936 | 39.130 | 0.00 | 0.00 | 0.00 | 3.91 |
146 | 147 | 3.064408 | AGCTTCTTTTTGCTTTGCTTTGC | 59.936 | 39.130 | 0.00 | 0.00 | 35.86 | 3.68 |
147 | 148 | 4.870221 | AGCTTCTTTTTGCTTTGCTTTG | 57.130 | 36.364 | 0.00 | 0.00 | 35.86 | 2.77 |
163 | 164 | 1.809547 | GGAGAGCCAACAAGAAGCTTC | 59.190 | 52.381 | 19.11 | 19.11 | 36.87 | 3.86 |
164 | 165 | 1.546548 | GGGAGAGCCAACAAGAAGCTT | 60.547 | 52.381 | 0.00 | 0.00 | 36.87 | 3.74 |
166 | 167 | 0.037447 | AGGGAGAGCCAACAAGAAGC | 59.963 | 55.000 | 0.00 | 0.00 | 35.15 | 3.86 |
202 | 208 | 4.967084 | TTAAGCTGGTGGTGAGACTAAA | 57.033 | 40.909 | 0.00 | 0.00 | 0.00 | 1.85 |
204 | 210 | 6.222038 | CTAATTAAGCTGGTGGTGAGACTA | 57.778 | 41.667 | 0.00 | 0.00 | 0.00 | 2.59 |
225 | 231 | 2.170166 | CTCATTTTGGCTGGTTGGCTA | 58.830 | 47.619 | 0.00 | 0.00 | 42.34 | 3.93 |
226 | 232 | 0.971386 | CTCATTTTGGCTGGTTGGCT | 59.029 | 50.000 | 0.00 | 0.00 | 42.34 | 4.75 |
227 | 233 | 0.671472 | GCTCATTTTGGCTGGTTGGC | 60.671 | 55.000 | 0.00 | 0.00 | 42.18 | 4.52 |
228 | 234 | 0.680618 | TGCTCATTTTGGCTGGTTGG | 59.319 | 50.000 | 0.00 | 0.00 | 0.00 | 3.77 |
229 | 235 | 1.938016 | GCTGCTCATTTTGGCTGGTTG | 60.938 | 52.381 | 0.00 | 0.00 | 0.00 | 3.77 |
230 | 236 | 0.319405 | GCTGCTCATTTTGGCTGGTT | 59.681 | 50.000 | 0.00 | 0.00 | 0.00 | 3.67 |
231 | 237 | 0.828762 | TGCTGCTCATTTTGGCTGGT | 60.829 | 50.000 | 0.00 | 0.00 | 0.00 | 4.00 |
232 | 238 | 0.535335 | ATGCTGCTCATTTTGGCTGG | 59.465 | 50.000 | 0.00 | 0.00 | 29.16 | 4.85 |
258 | 279 | 2.678934 | AAGTGCCATGCCAGCCAG | 60.679 | 61.111 | 0.00 | 0.00 | 0.00 | 4.85 |
259 | 280 | 2.992689 | CAAGTGCCATGCCAGCCA | 60.993 | 61.111 | 0.00 | 0.00 | 0.00 | 4.75 |
261 | 282 | 3.352338 | GAGCAAGTGCCATGCCAGC | 62.352 | 63.158 | 0.00 | 0.00 | 44.91 | 4.85 |
262 | 283 | 2.707849 | GGAGCAAGTGCCATGCCAG | 61.708 | 63.158 | 0.00 | 0.00 | 44.91 | 4.85 |
266 | 287 | 0.607217 | TGTGAGGAGCAAGTGCCATG | 60.607 | 55.000 | 0.00 | 0.00 | 43.38 | 3.66 |
267 | 288 | 0.330604 | ATGTGAGGAGCAAGTGCCAT | 59.669 | 50.000 | 0.00 | 0.00 | 43.38 | 4.40 |
268 | 289 | 0.321919 | GATGTGAGGAGCAAGTGCCA | 60.322 | 55.000 | 0.00 | 0.00 | 43.38 | 4.92 |
269 | 290 | 1.364626 | CGATGTGAGGAGCAAGTGCC | 61.365 | 60.000 | 0.00 | 0.00 | 43.38 | 5.01 |
270 | 291 | 1.975363 | GCGATGTGAGGAGCAAGTGC | 61.975 | 60.000 | 0.00 | 0.00 | 42.49 | 4.40 |
271 | 292 | 0.671472 | TGCGATGTGAGGAGCAAGTG | 60.671 | 55.000 | 0.00 | 0.00 | 36.60 | 3.16 |
272 | 293 | 0.251354 | ATGCGATGTGAGGAGCAAGT | 59.749 | 50.000 | 0.00 | 0.00 | 43.19 | 3.16 |
273 | 294 | 0.935898 | GATGCGATGTGAGGAGCAAG | 59.064 | 55.000 | 0.00 | 0.00 | 43.19 | 4.01 |
274 | 295 | 0.249955 | TGATGCGATGTGAGGAGCAA | 59.750 | 50.000 | 0.00 | 0.00 | 43.19 | 3.91 |
275 | 296 | 0.460811 | GTGATGCGATGTGAGGAGCA | 60.461 | 55.000 | 0.00 | 0.00 | 44.13 | 4.26 |
276 | 297 | 0.460811 | TGTGATGCGATGTGAGGAGC | 60.461 | 55.000 | 0.00 | 0.00 | 0.00 | 4.70 |
277 | 298 | 2.133553 | GATGTGATGCGATGTGAGGAG | 58.866 | 52.381 | 0.00 | 0.00 | 0.00 | 3.69 |
278 | 299 | 1.481772 | TGATGTGATGCGATGTGAGGA | 59.518 | 47.619 | 0.00 | 0.00 | 0.00 | 3.71 |
279 | 300 | 1.596260 | GTGATGTGATGCGATGTGAGG | 59.404 | 52.381 | 0.00 | 0.00 | 0.00 | 3.86 |
280 | 301 | 2.273557 | TGTGATGTGATGCGATGTGAG | 58.726 | 47.619 | 0.00 | 0.00 | 0.00 | 3.51 |
281 | 302 | 2.383368 | TGTGATGTGATGCGATGTGA | 57.617 | 45.000 | 0.00 | 0.00 | 0.00 | 3.58 |
282 | 303 | 2.610374 | TGATGTGATGTGATGCGATGTG | 59.390 | 45.455 | 0.00 | 0.00 | 0.00 | 3.21 |
283 | 304 | 2.610833 | GTGATGTGATGTGATGCGATGT | 59.389 | 45.455 | 0.00 | 0.00 | 0.00 | 3.06 |
284 | 305 | 2.610374 | TGTGATGTGATGTGATGCGATG | 59.390 | 45.455 | 0.00 | 0.00 | 0.00 | 3.84 |
285 | 306 | 2.908916 | TGTGATGTGATGTGATGCGAT | 58.091 | 42.857 | 0.00 | 0.00 | 0.00 | 4.58 |
286 | 307 | 2.383368 | TGTGATGTGATGTGATGCGA | 57.617 | 45.000 | 0.00 | 0.00 | 0.00 | 5.10 |
287 | 308 | 2.610374 | TGATGTGATGTGATGTGATGCG | 59.390 | 45.455 | 0.00 | 0.00 | 0.00 | 4.73 |
288 | 309 | 3.375922 | TGTGATGTGATGTGATGTGATGC | 59.624 | 43.478 | 0.00 | 0.00 | 0.00 | 3.91 |
289 | 310 | 5.505654 | CCATGTGATGTGATGTGATGTGATG | 60.506 | 44.000 | 0.00 | 0.00 | 0.00 | 3.07 |
290 | 311 | 4.578928 | CCATGTGATGTGATGTGATGTGAT | 59.421 | 41.667 | 0.00 | 0.00 | 0.00 | 3.06 |
291 | 312 | 3.942748 | CCATGTGATGTGATGTGATGTGA | 59.057 | 43.478 | 0.00 | 0.00 | 0.00 | 3.58 |
292 | 313 | 3.692593 | ACCATGTGATGTGATGTGATGTG | 59.307 | 43.478 | 0.00 | 0.00 | 0.00 | 3.21 |
293 | 314 | 3.959293 | ACCATGTGATGTGATGTGATGT | 58.041 | 40.909 | 0.00 | 0.00 | 0.00 | 3.06 |
319 | 340 | 5.733091 | GCAGTGACAGAGCATAAAAACAACA | 60.733 | 40.000 | 0.00 | 0.00 | 0.00 | 3.33 |
320 | 341 | 4.676924 | GCAGTGACAGAGCATAAAAACAAC | 59.323 | 41.667 | 0.00 | 0.00 | 0.00 | 3.32 |
327 | 350 | 2.299867 | TGTGAGCAGTGACAGAGCATAA | 59.700 | 45.455 | 0.00 | 0.00 | 0.00 | 1.90 |
370 | 400 | 2.896685 | ACAAAGAGAGAGGACAGACAGG | 59.103 | 50.000 | 0.00 | 0.00 | 0.00 | 4.00 |
374 | 404 | 3.534357 | AGGACAAAGAGAGAGGACAGA | 57.466 | 47.619 | 0.00 | 0.00 | 0.00 | 3.41 |
384 | 414 | 5.712917 | ACTGTAGGACTAGAAGGACAAAGAG | 59.287 | 44.000 | 0.00 | 0.00 | 0.00 | 2.85 |
386 | 416 | 5.986501 | ACTGTAGGACTAGAAGGACAAAG | 57.013 | 43.478 | 0.00 | 0.00 | 0.00 | 2.77 |
388 | 418 | 5.884322 | TGTACTGTAGGACTAGAAGGACAA | 58.116 | 41.667 | 0.00 | 0.00 | 0.00 | 3.18 |
390 | 420 | 5.499313 | ACTGTACTGTAGGACTAGAAGGAC | 58.501 | 45.833 | 3.21 | 0.00 | 0.00 | 3.85 |
391 | 421 | 5.775813 | ACTGTACTGTAGGACTAGAAGGA | 57.224 | 43.478 | 3.21 | 0.00 | 0.00 | 3.36 |
392 | 422 | 6.413052 | TGTACTGTACTGTAGGACTAGAAGG | 58.587 | 44.000 | 17.98 | 0.00 | 30.11 | 3.46 |
394 | 424 | 7.013823 | ACTGTACTGTACTGTAGGACTAGAA | 57.986 | 40.000 | 23.50 | 0.00 | 38.78 | 2.10 |
396 | 426 | 7.326454 | TGTACTGTACTGTACTGTAGGACTAG | 58.674 | 42.308 | 30.96 | 13.56 | 41.63 | 2.57 |
397 | 427 | 7.038729 | ACTGTACTGTACTGTACTGTAGGACTA | 60.039 | 40.741 | 33.83 | 17.47 | 46.32 | 2.59 |
399 | 429 | 5.936956 | ACTGTACTGTACTGTACTGTAGGAC | 59.063 | 44.000 | 33.83 | 21.58 | 46.32 | 3.85 |
408 | 438 | 7.806409 | TTTCACTGTACTGTACTGTACTGTA | 57.194 | 36.000 | 33.99 | 24.76 | 46.39 | 2.74 |
410 | 440 | 9.687210 | TTAATTTCACTGTACTGTACTGTACTG | 57.313 | 33.333 | 30.70 | 30.70 | 42.22 | 2.74 |
411 | 441 | 9.688592 | GTTAATTTCACTGTACTGTACTGTACT | 57.311 | 33.333 | 30.96 | 17.29 | 42.22 | 2.73 |
412 | 442 | 9.467258 | TGTTAATTTCACTGTACTGTACTGTAC | 57.533 | 33.333 | 27.19 | 27.19 | 42.10 | 2.90 |
413 | 443 | 9.687210 | CTGTTAATTTCACTGTACTGTACTGTA | 57.313 | 33.333 | 24.04 | 13.43 | 38.55 | 2.74 |
414 | 444 | 8.418662 | TCTGTTAATTTCACTGTACTGTACTGT | 58.581 | 33.333 | 20.48 | 20.48 | 40.80 | 3.55 |
425 | 455 | 7.147312 | TGCTTTGGATTCTGTTAATTTCACTG | 58.853 | 34.615 | 0.00 | 0.00 | 0.00 | 3.66 |
438 | 468 | 3.028094 | AGATGGCATGCTTTGGATTCT | 57.972 | 42.857 | 18.92 | 6.67 | 0.00 | 2.40 |
450 | 480 | 4.079212 | ACCAACACCCTAATAAGATGGCAT | 60.079 | 41.667 | 0.00 | 0.00 | 0.00 | 4.40 |
451 | 481 | 3.268334 | ACCAACACCCTAATAAGATGGCA | 59.732 | 43.478 | 0.00 | 0.00 | 0.00 | 4.92 |
452 | 482 | 3.632145 | CACCAACACCCTAATAAGATGGC | 59.368 | 47.826 | 0.00 | 0.00 | 0.00 | 4.40 |
453 | 483 | 4.207165 | CCACCAACACCCTAATAAGATGG | 58.793 | 47.826 | 0.00 | 0.00 | 0.00 | 3.51 |
454 | 484 | 3.632145 | GCCACCAACACCCTAATAAGATG | 59.368 | 47.826 | 0.00 | 0.00 | 0.00 | 2.90 |
455 | 485 | 3.372675 | GGCCACCAACACCCTAATAAGAT | 60.373 | 47.826 | 0.00 | 0.00 | 0.00 | 2.40 |
456 | 486 | 2.025699 | GGCCACCAACACCCTAATAAGA | 60.026 | 50.000 | 0.00 | 0.00 | 0.00 | 2.10 |
459 | 489 | 0.253610 | CGGCCACCAACACCCTAATA | 59.746 | 55.000 | 2.24 | 0.00 | 0.00 | 0.98 |
460 | 490 | 1.001393 | CGGCCACCAACACCCTAAT | 60.001 | 57.895 | 2.24 | 0.00 | 0.00 | 1.73 |
462 | 492 | 1.906105 | GATCGGCCACCAACACCCTA | 61.906 | 60.000 | 2.24 | 0.00 | 0.00 | 3.53 |
463 | 493 | 3.256960 | ATCGGCCACCAACACCCT | 61.257 | 61.111 | 2.24 | 0.00 | 0.00 | 4.34 |
465 | 495 | 2.750237 | GGATCGGCCACCAACACC | 60.750 | 66.667 | 2.24 | 0.00 | 36.34 | 4.16 |
466 | 496 | 2.033448 | TGGATCGGCCACCAACAC | 59.967 | 61.111 | 2.24 | 0.00 | 43.33 | 3.32 |
474 | 504 | 9.705290 | ATTTATTTATTTATTGTTGGATCGGCC | 57.295 | 29.630 | 0.00 | 0.00 | 37.10 | 6.13 |
531 | 561 | 7.171630 | AGGTACTACCAAGTATTTCACTCTG | 57.828 | 40.000 | 8.01 | 0.00 | 41.95 | 3.35 |
540 | 570 | 5.774179 | TGCCTCTAAGGTACTACCAAGTAT | 58.226 | 41.667 | 8.01 | 0.00 | 41.95 | 2.12 |
546 | 576 | 9.872721 | GATTTATTATGCCTCTAAGGTACTACC | 57.127 | 37.037 | 0.00 | 0.00 | 38.49 | 3.18 |
550 | 580 | 6.313164 | GCGGATTTATTATGCCTCTAAGGTAC | 59.687 | 42.308 | 0.00 | 0.00 | 37.80 | 3.34 |
551 | 581 | 6.403878 | GCGGATTTATTATGCCTCTAAGGTA | 58.596 | 40.000 | 0.00 | 0.00 | 37.80 | 3.08 |
552 | 582 | 5.246307 | GCGGATTTATTATGCCTCTAAGGT | 58.754 | 41.667 | 0.00 | 0.00 | 37.80 | 3.50 |
553 | 583 | 4.636206 | GGCGGATTTATTATGCCTCTAAGG | 59.364 | 45.833 | 0.00 | 0.00 | 42.44 | 2.69 |
554 | 584 | 4.330074 | CGGCGGATTTATTATGCCTCTAAG | 59.670 | 45.833 | 0.00 | 0.00 | 43.54 | 2.18 |
555 | 585 | 4.020928 | TCGGCGGATTTATTATGCCTCTAA | 60.021 | 41.667 | 7.21 | 0.00 | 43.54 | 2.10 |
558 | 588 | 2.695359 | TCGGCGGATTTATTATGCCTC | 58.305 | 47.619 | 7.21 | 0.00 | 43.54 | 4.70 |
559 | 589 | 2.851263 | TCGGCGGATTTATTATGCCT | 57.149 | 45.000 | 7.21 | 0.00 | 43.54 | 4.75 |
560 | 590 | 3.907894 | TTTCGGCGGATTTATTATGCC | 57.092 | 42.857 | 7.21 | 0.00 | 42.29 | 4.40 |
561 | 591 | 5.342259 | GTGATTTTCGGCGGATTTATTATGC | 59.658 | 40.000 | 7.21 | 0.00 | 0.00 | 3.14 |
607 | 660 | 3.387962 | TCATCCTTCTCAGTTGCCCTAT | 58.612 | 45.455 | 0.00 | 0.00 | 0.00 | 2.57 |
623 | 676 | 7.148507 | CGGTGAGCTTCTGATTTATATTCATCC | 60.149 | 40.741 | 0.00 | 0.00 | 0.00 | 3.51 |
658 | 723 | 2.094675 | CATGTCCAATCCAACCTGTCC | 58.905 | 52.381 | 0.00 | 0.00 | 0.00 | 4.02 |
659 | 724 | 2.094675 | CCATGTCCAATCCAACCTGTC | 58.905 | 52.381 | 0.00 | 0.00 | 0.00 | 3.51 |
660 | 725 | 1.710244 | TCCATGTCCAATCCAACCTGT | 59.290 | 47.619 | 0.00 | 0.00 | 0.00 | 4.00 |
661 | 726 | 2.094675 | GTCCATGTCCAATCCAACCTG | 58.905 | 52.381 | 0.00 | 0.00 | 0.00 | 4.00 |
664 | 729 | 1.474077 | GCTGTCCATGTCCAATCCAAC | 59.526 | 52.381 | 0.00 | 0.00 | 0.00 | 3.77 |
688 | 753 | 3.010584 | AGGCTGTCCATGTCCAATAACTT | 59.989 | 43.478 | 0.00 | 0.00 | 33.74 | 2.66 |
690 | 755 | 2.945668 | GAGGCTGTCCATGTCCAATAAC | 59.054 | 50.000 | 0.00 | 0.00 | 33.74 | 1.89 |
693 | 758 | 0.994247 | TGAGGCTGTCCATGTCCAAT | 59.006 | 50.000 | 0.00 | 0.00 | 33.74 | 3.16 |
694 | 759 | 0.770499 | TTGAGGCTGTCCATGTCCAA | 59.230 | 50.000 | 0.00 | 0.00 | 33.74 | 3.53 |
695 | 760 | 0.994247 | ATTGAGGCTGTCCATGTCCA | 59.006 | 50.000 | 0.00 | 0.00 | 33.74 | 4.02 |
696 | 761 | 2.945668 | GTTATTGAGGCTGTCCATGTCC | 59.054 | 50.000 | 0.00 | 0.00 | 33.74 | 4.02 |
697 | 762 | 3.609853 | TGTTATTGAGGCTGTCCATGTC | 58.390 | 45.455 | 0.00 | 0.00 | 33.74 | 3.06 |
698 | 763 | 3.264193 | TCTGTTATTGAGGCTGTCCATGT | 59.736 | 43.478 | 0.00 | 0.00 | 33.74 | 3.21 |
700 | 765 | 3.521126 | ACTCTGTTATTGAGGCTGTCCAT | 59.479 | 43.478 | 0.00 | 0.00 | 35.98 | 3.41 |
702 | 767 | 3.055819 | TCACTCTGTTATTGAGGCTGTCC | 60.056 | 47.826 | 0.00 | 0.00 | 35.98 | 4.02 |
703 | 768 | 4.193826 | TCACTCTGTTATTGAGGCTGTC | 57.806 | 45.455 | 0.00 | 0.00 | 35.98 | 3.51 |
704 | 769 | 4.623932 | TTCACTCTGTTATTGAGGCTGT | 57.376 | 40.909 | 0.00 | 0.00 | 35.98 | 4.40 |
705 | 770 | 6.373774 | AGAATTTCACTCTGTTATTGAGGCTG | 59.626 | 38.462 | 0.00 | 0.00 | 35.98 | 4.85 |
706 | 771 | 6.479884 | AGAATTTCACTCTGTTATTGAGGCT | 58.520 | 36.000 | 0.00 | 0.00 | 35.98 | 4.58 |
707 | 772 | 6.749923 | AGAATTTCACTCTGTTATTGAGGC | 57.250 | 37.500 | 0.00 | 0.00 | 35.98 | 4.70 |
708 | 773 | 7.025963 | GCAAGAATTTCACTCTGTTATTGAGG | 58.974 | 38.462 | 0.00 | 0.00 | 35.98 | 3.86 |
709 | 774 | 7.814642 | AGCAAGAATTTCACTCTGTTATTGAG | 58.185 | 34.615 | 0.00 | 0.00 | 37.55 | 3.02 |
710 | 775 | 7.750229 | AGCAAGAATTTCACTCTGTTATTGA | 57.250 | 32.000 | 0.00 | 0.00 | 0.00 | 2.57 |
711 | 776 | 7.965107 | GGTAGCAAGAATTTCACTCTGTTATTG | 59.035 | 37.037 | 0.00 | 0.00 | 0.00 | 1.90 |
712 | 777 | 7.665559 | TGGTAGCAAGAATTTCACTCTGTTATT | 59.334 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
713 | 778 | 7.168219 | TGGTAGCAAGAATTTCACTCTGTTAT | 58.832 | 34.615 | 0.00 | 0.00 | 0.00 | 1.89 |
714 | 779 | 6.530120 | TGGTAGCAAGAATTTCACTCTGTTA | 58.470 | 36.000 | 0.00 | 0.00 | 0.00 | 2.41 |
715 | 780 | 5.376625 | TGGTAGCAAGAATTTCACTCTGTT | 58.623 | 37.500 | 0.00 | 0.00 | 0.00 | 3.16 |
716 | 781 | 4.973168 | TGGTAGCAAGAATTTCACTCTGT | 58.027 | 39.130 | 0.00 | 0.00 | 0.00 | 3.41 |
717 | 782 | 5.947228 | TTGGTAGCAAGAATTTCACTCTG | 57.053 | 39.130 | 2.54 | 0.00 | 0.00 | 3.35 |
718 | 783 | 5.241728 | GGTTTGGTAGCAAGAATTTCACTCT | 59.758 | 40.000 | 7.51 | 0.00 | 0.00 | 3.24 |
719 | 784 | 5.461526 | GGTTTGGTAGCAAGAATTTCACTC | 58.538 | 41.667 | 7.51 | 0.00 | 0.00 | 3.51 |
720 | 785 | 4.280929 | GGGTTTGGTAGCAAGAATTTCACT | 59.719 | 41.667 | 7.51 | 0.00 | 0.00 | 3.41 |
721 | 786 | 4.038642 | TGGGTTTGGTAGCAAGAATTTCAC | 59.961 | 41.667 | 7.51 | 1.41 | 0.00 | 3.18 |
722 | 787 | 4.219115 | TGGGTTTGGTAGCAAGAATTTCA | 58.781 | 39.130 | 7.51 | 0.33 | 0.00 | 2.69 |
723 | 788 | 4.864704 | TGGGTTTGGTAGCAAGAATTTC | 57.135 | 40.909 | 7.51 | 0.00 | 0.00 | 2.17 |
724 | 789 | 5.364778 | GTTTGGGTTTGGTAGCAAGAATTT | 58.635 | 37.500 | 7.51 | 0.00 | 0.00 | 1.82 |
725 | 790 | 4.202315 | GGTTTGGGTTTGGTAGCAAGAATT | 60.202 | 41.667 | 7.51 | 0.00 | 0.00 | 2.17 |
726 | 791 | 3.323691 | GGTTTGGGTTTGGTAGCAAGAAT | 59.676 | 43.478 | 7.51 | 0.00 | 0.00 | 2.40 |
734 | 799 | 2.432510 | CTGCTTTGGTTTGGGTTTGGTA | 59.567 | 45.455 | 0.00 | 0.00 | 0.00 | 3.25 |
772 | 840 | 1.618030 | GGGAGGAGAGAGCAGAGGA | 59.382 | 63.158 | 0.00 | 0.00 | 0.00 | 3.71 |
774 | 842 | 0.468029 | GAGGGGAGGAGAGAGCAGAG | 60.468 | 65.000 | 0.00 | 0.00 | 0.00 | 3.35 |
775 | 843 | 1.618030 | GAGGGGAGGAGAGAGCAGA | 59.382 | 63.158 | 0.00 | 0.00 | 0.00 | 4.26 |
777 | 845 | 2.693017 | GGAGGGGAGGAGAGAGCA | 59.307 | 66.667 | 0.00 | 0.00 | 0.00 | 4.26 |
778 | 846 | 2.123033 | GGGAGGGGAGGAGAGAGC | 60.123 | 72.222 | 0.00 | 0.00 | 0.00 | 4.09 |
779 | 847 | 2.328589 | TGGGGAGGGGAGGAGAGAG | 61.329 | 68.421 | 0.00 | 0.00 | 0.00 | 3.20 |
780 | 848 | 2.204624 | TGGGGAGGGGAGGAGAGA | 60.205 | 66.667 | 0.00 | 0.00 | 0.00 | 3.10 |
781 | 849 | 2.041405 | GTGGGGAGGGGAGGAGAG | 60.041 | 72.222 | 0.00 | 0.00 | 0.00 | 3.20 |
782 | 850 | 1.837533 | AATGTGGGGAGGGGAGGAGA | 61.838 | 60.000 | 0.00 | 0.00 | 0.00 | 3.71 |
833 | 937 | 3.055530 | AGGAACAGTTACAGAGGATGCAG | 60.056 | 47.826 | 0.00 | 0.00 | 0.00 | 4.41 |
834 | 938 | 2.906389 | AGGAACAGTTACAGAGGATGCA | 59.094 | 45.455 | 0.00 | 0.00 | 0.00 | 3.96 |
835 | 939 | 3.618690 | AGGAACAGTTACAGAGGATGC | 57.381 | 47.619 | 0.00 | 0.00 | 0.00 | 3.91 |
865 | 1009 | 2.110721 | AGAAAATCCTTCCTTGTGCCCT | 59.889 | 45.455 | 0.00 | 0.00 | 0.00 | 5.19 |
867 | 1011 | 2.493675 | GGAGAAAATCCTTCCTTGTGCC | 59.506 | 50.000 | 0.00 | 0.00 | 45.64 | 5.01 |
884 | 1028 | 3.587498 | TCAAGAAGGAAACTCTGGGAGA | 58.413 | 45.455 | 1.31 | 0.00 | 42.68 | 3.71 |
886 | 1030 | 5.324832 | AATTCAAGAAGGAAACTCTGGGA | 57.675 | 39.130 | 0.00 | 0.00 | 42.68 | 4.37 |
889 | 1033 | 8.193438 | AGAACAAAATTCAAGAAGGAAACTCTG | 58.807 | 33.333 | 0.00 | 0.00 | 42.68 | 3.35 |
891 | 1035 | 8.811378 | CAAGAACAAAATTCAAGAAGGAAACTC | 58.189 | 33.333 | 0.00 | 0.00 | 42.68 | 3.01 |
893 | 1037 | 7.278646 | AGCAAGAACAAAATTCAAGAAGGAAAC | 59.721 | 33.333 | 0.00 | 0.00 | 0.00 | 2.78 |
895 | 1039 | 6.877236 | AGCAAGAACAAAATTCAAGAAGGAA | 58.123 | 32.000 | 0.00 | 0.00 | 0.00 | 3.36 |
896 | 1040 | 6.469782 | AGCAAGAACAAAATTCAAGAAGGA | 57.530 | 33.333 | 0.00 | 0.00 | 0.00 | 3.36 |
897 | 1041 | 6.536224 | ACAAGCAAGAACAAAATTCAAGAAGG | 59.464 | 34.615 | 0.00 | 0.00 | 0.00 | 3.46 |
898 | 1042 | 7.254218 | GGACAAGCAAGAACAAAATTCAAGAAG | 60.254 | 37.037 | 0.00 | 0.00 | 0.00 | 2.85 |
944 | 1088 | 0.963856 | CAGGAGCAGGAGCAAATGCA | 60.964 | 55.000 | 8.28 | 0.00 | 45.01 | 3.96 |
950 | 1094 | 3.397439 | GGAGCAGGAGCAGGAGCA | 61.397 | 66.667 | 0.00 | 0.00 | 45.49 | 4.26 |
951 | 1095 | 4.173924 | GGGAGCAGGAGCAGGAGC | 62.174 | 72.222 | 0.00 | 0.00 | 45.49 | 4.70 |
952 | 1096 | 3.847602 | CGGGAGCAGGAGCAGGAG | 61.848 | 72.222 | 0.00 | 0.00 | 45.49 | 3.69 |
955 | 1099 | 2.657102 | GAATCCGGGAGCAGGAGCAG | 62.657 | 65.000 | 0.00 | 0.00 | 45.49 | 4.24 |
997 | 1145 | 0.040204 | ATGGCCAAGAAGAAGTGGGG | 59.960 | 55.000 | 10.96 | 0.00 | 35.28 | 4.96 |
1023 | 1171 | 1.009829 | CGGCAGCCAAAGATGTAGAC | 58.990 | 55.000 | 13.30 | 0.00 | 0.00 | 2.59 |
1024 | 1172 | 0.744414 | GCGGCAGCCAAAGATGTAGA | 60.744 | 55.000 | 13.30 | 0.00 | 37.42 | 2.59 |
1025 | 1173 | 1.026182 | TGCGGCAGCCAAAGATGTAG | 61.026 | 55.000 | 13.30 | 0.00 | 44.33 | 2.74 |
1272 | 1469 | 2.766263 | CTGGATCTACCACCTGTAGCAA | 59.234 | 50.000 | 0.00 | 0.00 | 45.56 | 3.91 |
1374 | 1601 | 4.326817 | CACACACACACAAGAAATTGTTGG | 59.673 | 41.667 | 7.76 | 0.00 | 31.86 | 3.77 |
1393 | 1641 | 0.871722 | ACACACACACACACACACAC | 59.128 | 50.000 | 0.00 | 0.00 | 0.00 | 3.82 |
1394 | 1642 | 0.871057 | CACACACACACACACACACA | 59.129 | 50.000 | 0.00 | 0.00 | 0.00 | 3.72 |
1398 | 1646 | 2.394563 | CGCCACACACACACACACA | 61.395 | 57.895 | 0.00 | 0.00 | 0.00 | 3.72 |
1432 | 2297 | 4.323257 | GGGGGAGAAACAGAGAATTCGTTA | 60.323 | 45.833 | 0.00 | 0.00 | 0.00 | 3.18 |
1435 | 2300 | 2.633488 | GGGGGAGAAACAGAGAATTCG | 58.367 | 52.381 | 0.00 | 0.00 | 0.00 | 3.34 |
1457 | 2327 | 6.605594 | ACCAAATCACACCTAGAAACAAGAAA | 59.394 | 34.615 | 0.00 | 0.00 | 0.00 | 2.52 |
1463 | 2333 | 5.507315 | CCACAACCAAATCACACCTAGAAAC | 60.507 | 44.000 | 0.00 | 0.00 | 0.00 | 2.78 |
1649 | 2538 | 4.374399 | ACAAATAAACACGAGACGAACCT | 58.626 | 39.130 | 0.00 | 0.00 | 0.00 | 3.50 |
1650 | 2539 | 4.209703 | TGACAAATAAACACGAGACGAACC | 59.790 | 41.667 | 0.00 | 0.00 | 0.00 | 3.62 |
1651 | 2540 | 5.319232 | TGACAAATAAACACGAGACGAAC | 57.681 | 39.130 | 0.00 | 0.00 | 0.00 | 3.95 |
1652 | 2541 | 4.084745 | GCTGACAAATAAACACGAGACGAA | 60.085 | 41.667 | 0.00 | 0.00 | 0.00 | 3.85 |
1653 | 2542 | 3.427528 | GCTGACAAATAAACACGAGACGA | 59.572 | 43.478 | 0.00 | 0.00 | 0.00 | 4.20 |
1654 | 2543 | 3.183574 | TGCTGACAAATAAACACGAGACG | 59.816 | 43.478 | 0.00 | 0.00 | 0.00 | 4.18 |
1655 | 2544 | 4.211374 | ACTGCTGACAAATAAACACGAGAC | 59.789 | 41.667 | 0.00 | 0.00 | 0.00 | 3.36 |
1656 | 2545 | 4.211164 | CACTGCTGACAAATAAACACGAGA | 59.789 | 41.667 | 0.00 | 0.00 | 0.00 | 4.04 |
1657 | 2546 | 4.024893 | ACACTGCTGACAAATAAACACGAG | 60.025 | 41.667 | 0.00 | 0.00 | 0.00 | 4.18 |
1658 | 2547 | 3.874543 | ACACTGCTGACAAATAAACACGA | 59.125 | 39.130 | 0.00 | 0.00 | 0.00 | 4.35 |
1659 | 2548 | 4.209452 | ACACTGCTGACAAATAAACACG | 57.791 | 40.909 | 0.00 | 0.00 | 0.00 | 4.49 |
1660 | 2549 | 4.211389 | CGACACTGCTGACAAATAAACAC | 58.789 | 43.478 | 0.00 | 0.00 | 0.00 | 3.32 |
1661 | 2550 | 3.249799 | CCGACACTGCTGACAAATAAACA | 59.750 | 43.478 | 0.00 | 0.00 | 0.00 | 2.83 |
1662 | 2551 | 3.810373 | CCGACACTGCTGACAAATAAAC | 58.190 | 45.455 | 0.00 | 0.00 | 0.00 | 2.01 |
1663 | 2552 | 2.225491 | GCCGACACTGCTGACAAATAAA | 59.775 | 45.455 | 0.00 | 0.00 | 0.00 | 1.40 |
1664 | 2553 | 1.804151 | GCCGACACTGCTGACAAATAA | 59.196 | 47.619 | 0.00 | 0.00 | 0.00 | 1.40 |
1665 | 2554 | 1.438651 | GCCGACACTGCTGACAAATA | 58.561 | 50.000 | 0.00 | 0.00 | 0.00 | 1.40 |
1666 | 2555 | 1.568612 | CGCCGACACTGCTGACAAAT | 61.569 | 55.000 | 0.00 | 0.00 | 0.00 | 2.32 |
1667 | 2556 | 2.243957 | CGCCGACACTGCTGACAAA | 61.244 | 57.895 | 0.00 | 0.00 | 0.00 | 2.83 |
1668 | 2557 | 2.661537 | CGCCGACACTGCTGACAA | 60.662 | 61.111 | 0.00 | 0.00 | 0.00 | 3.18 |
1669 | 2558 | 4.662961 | CCGCCGACACTGCTGACA | 62.663 | 66.667 | 0.00 | 0.00 | 0.00 | 3.58 |
1670 | 2559 | 4.664677 | ACCGCCGACACTGCTGAC | 62.665 | 66.667 | 0.00 | 0.00 | 0.00 | 3.51 |
1671 | 2560 | 4.662961 | CACCGCCGACACTGCTGA | 62.663 | 66.667 | 0.00 | 0.00 | 0.00 | 4.26 |
1682 | 2571 | 2.275380 | AAAATGAGCCACCACCGCC | 61.275 | 57.895 | 0.00 | 0.00 | 0.00 | 6.13 |
1683 | 2572 | 1.080569 | CAAAATGAGCCACCACCGC | 60.081 | 57.895 | 0.00 | 0.00 | 0.00 | 5.68 |
1684 | 2573 | 1.080569 | GCAAAATGAGCCACCACCG | 60.081 | 57.895 | 0.00 | 0.00 | 0.00 | 4.94 |
1685 | 2574 | 1.080569 | CGCAAAATGAGCCACCACC | 60.081 | 57.895 | 0.00 | 0.00 | 0.00 | 4.61 |
1686 | 2575 | 0.664166 | CACGCAAAATGAGCCACCAC | 60.664 | 55.000 | 0.00 | 0.00 | 0.00 | 4.16 |
1687 | 2576 | 1.659233 | CACGCAAAATGAGCCACCA | 59.341 | 52.632 | 0.00 | 0.00 | 0.00 | 4.17 |
1688 | 2577 | 1.080569 | CCACGCAAAATGAGCCACC | 60.081 | 57.895 | 0.00 | 0.00 | 0.00 | 4.61 |
1689 | 2578 | 0.664166 | CACCACGCAAAATGAGCCAC | 60.664 | 55.000 | 0.00 | 0.00 | 0.00 | 5.01 |
1690 | 2579 | 1.106351 | ACACCACGCAAAATGAGCCA | 61.106 | 50.000 | 0.00 | 0.00 | 0.00 | 4.75 |
1691 | 2580 | 0.031994 | AACACCACGCAAAATGAGCC | 59.968 | 50.000 | 0.00 | 0.00 | 0.00 | 4.70 |
1692 | 2581 | 1.130955 | CAACACCACGCAAAATGAGC | 58.869 | 50.000 | 0.00 | 0.00 | 0.00 | 4.26 |
1693 | 2582 | 1.769733 | CCAACACCACGCAAAATGAG | 58.230 | 50.000 | 0.00 | 0.00 | 0.00 | 2.90 |
1694 | 2583 | 0.249238 | GCCAACACCACGCAAAATGA | 60.249 | 50.000 | 0.00 | 0.00 | 0.00 | 2.57 |
1695 | 2584 | 0.529337 | TGCCAACACCACGCAAAATG | 60.529 | 50.000 | 0.00 | 0.00 | 0.00 | 2.32 |
1696 | 2585 | 0.392336 | ATGCCAACACCACGCAAAAT | 59.608 | 45.000 | 0.00 | 0.00 | 35.85 | 1.82 |
1697 | 2586 | 0.176680 | AATGCCAACACCACGCAAAA | 59.823 | 45.000 | 0.00 | 0.00 | 35.85 | 2.44 |
1698 | 2587 | 1.000827 | CTAATGCCAACACCACGCAAA | 60.001 | 47.619 | 0.00 | 0.00 | 35.85 | 3.68 |
1699 | 2588 | 0.595588 | CTAATGCCAACACCACGCAA | 59.404 | 50.000 | 0.00 | 0.00 | 35.85 | 4.85 |
1700 | 2589 | 1.240641 | CCTAATGCCAACACCACGCA | 61.241 | 55.000 | 0.00 | 0.00 | 36.84 | 5.24 |
1701 | 2590 | 1.241315 | ACCTAATGCCAACACCACGC | 61.241 | 55.000 | 0.00 | 0.00 | 0.00 | 5.34 |
1702 | 2591 | 1.199097 | GAACCTAATGCCAACACCACG | 59.801 | 52.381 | 0.00 | 0.00 | 0.00 | 4.94 |
1703 | 2592 | 1.199097 | CGAACCTAATGCCAACACCAC | 59.801 | 52.381 | 0.00 | 0.00 | 0.00 | 4.16 |
1704 | 2593 | 1.202830 | ACGAACCTAATGCCAACACCA | 60.203 | 47.619 | 0.00 | 0.00 | 0.00 | 4.17 |
1705 | 2594 | 1.467342 | GACGAACCTAATGCCAACACC | 59.533 | 52.381 | 0.00 | 0.00 | 0.00 | 4.16 |
1706 | 2595 | 1.467342 | GGACGAACCTAATGCCAACAC | 59.533 | 52.381 | 0.00 | 0.00 | 35.41 | 3.32 |
1707 | 2596 | 1.816074 | GGACGAACCTAATGCCAACA | 58.184 | 50.000 | 0.00 | 0.00 | 35.41 | 3.33 |
1708 | 2597 | 0.725117 | CGGACGAACCTAATGCCAAC | 59.275 | 55.000 | 0.00 | 0.00 | 36.31 | 3.77 |
1709 | 2598 | 0.391927 | CCGGACGAACCTAATGCCAA | 60.392 | 55.000 | 0.00 | 0.00 | 36.31 | 4.52 |
1710 | 2599 | 1.219664 | CCGGACGAACCTAATGCCA | 59.780 | 57.895 | 0.00 | 0.00 | 36.31 | 4.92 |
1711 | 2600 | 0.392060 | AACCGGACGAACCTAATGCC | 60.392 | 55.000 | 9.46 | 0.00 | 36.31 | 4.40 |
1712 | 2601 | 1.004595 | GAACCGGACGAACCTAATGC | 58.995 | 55.000 | 9.46 | 0.00 | 36.31 | 3.56 |
1713 | 2602 | 1.274596 | CGAACCGGACGAACCTAATG | 58.725 | 55.000 | 9.46 | 0.00 | 36.31 | 1.90 |
1714 | 2603 | 0.890683 | ACGAACCGGACGAACCTAAT | 59.109 | 50.000 | 25.79 | 5.27 | 36.31 | 1.73 |
1715 | 2604 | 0.039256 | CACGAACCGGACGAACCTAA | 60.039 | 55.000 | 25.79 | 0.00 | 36.31 | 2.69 |
1716 | 2605 | 0.888736 | TCACGAACCGGACGAACCTA | 60.889 | 55.000 | 25.79 | 8.62 | 36.31 | 3.08 |
1797 | 2802 | 1.375908 | GTTCTGGACAGCGATGGCA | 60.376 | 57.895 | 9.61 | 0.00 | 43.41 | 4.92 |
1864 | 2877 | 9.825972 | CTCAACAAATAAACAGGTACACAATAG | 57.174 | 33.333 | 0.00 | 0.00 | 0.00 | 1.73 |
1867 | 2880 | 7.771361 | TCTCTCAACAAATAAACAGGTACACAA | 59.229 | 33.333 | 0.00 | 0.00 | 0.00 | 3.33 |
1888 | 2907 | 7.761704 | TGTCACTGTTCTGCTATTATTTCTCTC | 59.238 | 37.037 | 0.00 | 0.00 | 0.00 | 3.20 |
1976 | 3011 | 8.764524 | AATGAAATCGGTAGCATCTCTTATAC | 57.235 | 34.615 | 0.00 | 0.00 | 0.00 | 1.47 |
1977 | 3012 | 8.035394 | GGAATGAAATCGGTAGCATCTCTTATA | 58.965 | 37.037 | 0.00 | 0.00 | 0.00 | 0.98 |
1978 | 3013 | 6.876257 | GGAATGAAATCGGTAGCATCTCTTAT | 59.124 | 38.462 | 0.00 | 0.00 | 0.00 | 1.73 |
1979 | 3014 | 6.042093 | AGGAATGAAATCGGTAGCATCTCTTA | 59.958 | 38.462 | 0.00 | 0.00 | 0.00 | 2.10 |
1980 | 3015 | 5.059833 | GGAATGAAATCGGTAGCATCTCTT | 58.940 | 41.667 | 0.00 | 0.00 | 0.00 | 2.85 |
1981 | 3016 | 4.346418 | AGGAATGAAATCGGTAGCATCTCT | 59.654 | 41.667 | 0.00 | 0.00 | 0.00 | 3.10 |
1982 | 3017 | 4.636249 | AGGAATGAAATCGGTAGCATCTC | 58.364 | 43.478 | 0.00 | 0.00 | 0.00 | 2.75 |
1983 | 3018 | 4.696479 | AGGAATGAAATCGGTAGCATCT | 57.304 | 40.909 | 0.00 | 0.00 | 0.00 | 2.90 |
2009 | 3072 | 4.698201 | TTCTTGGTAGACATTGTGACCA | 57.302 | 40.909 | 13.68 | 13.68 | 40.21 | 4.02 |
2019 | 3082 | 6.549952 | CATTGCTGAAGATTTCTTGGTAGAC | 58.450 | 40.000 | 0.00 | 0.00 | 36.11 | 2.59 |
2037 | 3100 | 2.874701 | CCAGCTACGAATAAGCATTGCT | 59.125 | 45.455 | 5.03 | 5.03 | 42.62 | 3.91 |
2101 | 3242 | 4.144418 | TGGTACACCGCACCAAAC | 57.856 | 55.556 | 0.00 | 0.00 | 43.08 | 2.93 |
2166 | 3329 | 3.070446 | CAGGCCATGCATCAACCATAAAT | 59.930 | 43.478 | 5.01 | 0.00 | 0.00 | 1.40 |
2173 | 3375 | 1.180029 | AAGACAGGCCATGCATCAAC | 58.820 | 50.000 | 5.01 | 0.00 | 0.00 | 3.18 |
2188 | 3390 | 9.628500 | AGGGAATGTATAAACAGGAATAAAGAC | 57.372 | 33.333 | 0.00 | 0.00 | 39.49 | 3.01 |
2198 | 3401 | 7.607991 | ACAGAACAGAAGGGAATGTATAAACAG | 59.392 | 37.037 | 0.00 | 0.00 | 39.49 | 3.16 |
2212 | 3418 | 7.803279 | AAGTTAGGTAAAACAGAACAGAAGG | 57.197 | 36.000 | 0.00 | 0.00 | 0.00 | 3.46 |
2416 | 3632 | 1.635487 | TCTTGCTGCCTGTAAAGGGAT | 59.365 | 47.619 | 0.00 | 0.00 | 0.00 | 3.85 |
2450 | 3666 | 2.101582 | GACGAGTGCCTTATCACCATCT | 59.898 | 50.000 | 0.00 | 0.00 | 37.68 | 2.90 |
2619 | 3848 | 7.571026 | CAGATAAATACTTTGAATGCTCCTCG | 58.429 | 38.462 | 0.00 | 0.00 | 0.00 | 4.63 |
2761 | 3993 | 7.078228 | CCGTTGATTAGATAAAAAGCATAGGC | 58.922 | 38.462 | 0.00 | 0.00 | 41.61 | 3.93 |
2769 | 4001 | 8.500773 | GTGTGAGAACCGTTGATTAGATAAAAA | 58.499 | 33.333 | 0.00 | 0.00 | 0.00 | 1.94 |
2781 | 4013 | 3.393800 | AGAATGAGTGTGAGAACCGTTG | 58.606 | 45.455 | 0.00 | 0.00 | 0.00 | 4.10 |
2874 | 4116 | 5.036737 | CCTTACCGCAATGCAGATAAAAAG | 58.963 | 41.667 | 5.91 | 0.00 | 0.00 | 2.27 |
2888 | 4143 | 0.687920 | TCCATTCACACCTTACCGCA | 59.312 | 50.000 | 0.00 | 0.00 | 0.00 | 5.69 |
2889 | 4144 | 2.038387 | ATCCATTCACACCTTACCGC | 57.962 | 50.000 | 0.00 | 0.00 | 0.00 | 5.68 |
2890 | 4145 | 6.693315 | AATAAATCCATTCACACCTTACCG | 57.307 | 37.500 | 0.00 | 0.00 | 0.00 | 4.02 |
2915 | 4171 | 7.042523 | GCTGAACTCTGCAAAACATTGTAAAAT | 60.043 | 33.333 | 3.93 | 0.00 | 40.06 | 1.82 |
3121 | 4421 | 4.444022 | GCCTCAGGTTCACATCATCTACAT | 60.444 | 45.833 | 0.00 | 0.00 | 0.00 | 2.29 |
3163 | 4463 | 7.741027 | AATTATGCAGTTCTCATATGGAGTG | 57.259 | 36.000 | 2.13 | 4.34 | 44.40 | 3.51 |
3310 | 4771 | 7.448469 | ACGCCTTCCTATTAATTGATAGCAAAT | 59.552 | 33.333 | 10.94 | 0.00 | 37.59 | 2.32 |
3335 | 4796 | 4.207635 | CACAAATCAATGAACTGTGTGCAC | 59.792 | 41.667 | 10.75 | 10.75 | 34.13 | 4.57 |
3407 | 4871 | 4.391830 | GGAAATTCAGAACGTGCAGACATA | 59.608 | 41.667 | 0.00 | 0.00 | 0.00 | 2.29 |
3419 | 4883 | 4.463891 | GCATTGAAGGGAGGAAATTCAGAA | 59.536 | 41.667 | 0.00 | 0.00 | 34.64 | 3.02 |
3556 | 5077 | 5.673514 | ACAAACAAAGTGAGCATTTGGAAT | 58.326 | 33.333 | 3.74 | 0.00 | 41.05 | 3.01 |
3584 | 5107 | 7.108841 | TCCGCTTATCAACTACAAAGATACT | 57.891 | 36.000 | 0.00 | 0.00 | 0.00 | 2.12 |
3629 | 5152 | 9.073475 | AGCATTTGGAAAGTACAAGTACAAATA | 57.927 | 29.630 | 12.43 | 0.00 | 38.48 | 1.40 |
3630 | 5153 | 7.951591 | AGCATTTGGAAAGTACAAGTACAAAT | 58.048 | 30.769 | 12.43 | 7.48 | 38.48 | 2.32 |
3637 | 5160 | 5.437289 | TGTGAGCATTTGGAAAGTACAAG | 57.563 | 39.130 | 0.00 | 0.00 | 0.00 | 3.16 |
3783 | 5310 | 7.543756 | CCTGGACAATAATAACGGAAAATTGT | 58.456 | 34.615 | 0.00 | 0.00 | 41.98 | 2.71 |
3791 | 5320 | 3.882888 | ACATGCCTGGACAATAATAACGG | 59.117 | 43.478 | 0.00 | 0.00 | 0.00 | 4.44 |
3804 | 5361 | 3.368323 | GGGTACAAATTCAACATGCCTGG | 60.368 | 47.826 | 0.00 | 0.00 | 0.00 | 4.45 |
3898 | 5458 | 5.163774 | GCAACAGAGAAATGATTCCTCAGAC | 60.164 | 44.000 | 0.00 | 0.00 | 36.12 | 3.51 |
6478 | 9814 | 9.236006 | CTATGGGAATTTGAAGAGAGAAAAGAA | 57.764 | 33.333 | 0.00 | 0.00 | 0.00 | 2.52 |
6480 | 9816 | 8.457261 | CACTATGGGAATTTGAAGAGAGAAAAG | 58.543 | 37.037 | 0.00 | 0.00 | 0.00 | 2.27 |
6485 | 9821 | 6.881065 | TCAACACTATGGGAATTTGAAGAGAG | 59.119 | 38.462 | 0.00 | 0.00 | 0.00 | 3.20 |
6542 | 9879 | 4.394920 | GCGGTTGGATTCTCTTGTTGAATA | 59.605 | 41.667 | 0.00 | 0.00 | 34.67 | 1.75 |
6568 | 9905 | 1.217916 | TGGAAGAACCAGTTCACCCA | 58.782 | 50.000 | 12.76 | 14.33 | 44.64 | 4.51 |
6597 | 9934 | 9.765795 | AGATTAGAAGTTTTCTCGAAAAGAAGA | 57.234 | 29.630 | 5.15 | 0.00 | 44.69 | 2.87 |
6633 | 9970 | 5.090757 | GTGTTCGTCGTACTGTCATGATTA | 58.909 | 41.667 | 0.00 | 0.00 | 0.00 | 1.75 |
6648 | 9985 | 8.677871 | AATTTTTATTATTTCCGGTGTTCGTC | 57.322 | 30.769 | 0.00 | 0.00 | 37.11 | 4.20 |
6664 | 10001 | 9.813826 | CCTATGGATCTGGAGGTAATTTTTATT | 57.186 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
6676 | 10016 | 0.689623 | GGTGGCCTATGGATCTGGAG | 59.310 | 60.000 | 3.32 | 0.00 | 0.00 | 3.86 |
6690 | 10030 | 1.063811 | GTAGTCGTCGCTAGGTGGC | 59.936 | 63.158 | 0.00 | 0.00 | 0.00 | 5.01 |
6711 | 10051 | 3.883744 | CTTCGGCCCGCTTCAGTGT | 62.884 | 63.158 | 0.00 | 0.00 | 0.00 | 3.55 |
6735 | 10075 | 3.224324 | GAGGGGCTATGACGGCGA | 61.224 | 66.667 | 16.62 | 0.00 | 0.00 | 5.54 |
6745 | 10085 | 1.684049 | CTCCGACAAGAGAGGGGCT | 60.684 | 63.158 | 0.00 | 0.00 | 35.82 | 5.19 |
6753 | 10093 | 2.599281 | TGCCCGACTCCGACAAGA | 60.599 | 61.111 | 0.00 | 0.00 | 38.22 | 3.02 |
6756 | 10109 | 3.228017 | TTGTGCCCGACTCCGACA | 61.228 | 61.111 | 0.00 | 0.00 | 38.22 | 4.35 |
6782 | 10135 | 4.336889 | GGTGACTTTCCGATCATATCCA | 57.663 | 45.455 | 0.00 | 0.00 | 0.00 | 3.41 |
6795 | 10148 | 0.396811 | AGCCTTAGCACGGTGACTTT | 59.603 | 50.000 | 13.29 | 0.00 | 43.56 | 2.66 |
6802 | 10155 | 0.034059 | CCTATGGAGCCTTAGCACGG | 59.966 | 60.000 | 4.38 | 0.00 | 43.56 | 4.94 |
6814 | 10167 | 0.546507 | TGGTGTGCTGGTCCTATGGA | 60.547 | 55.000 | 0.00 | 0.00 | 0.00 | 3.41 |
6847 | 10200 | 5.731599 | ATCTACGTTATTCTTCGTCGACT | 57.268 | 39.130 | 14.70 | 0.00 | 40.70 | 4.18 |
6886 | 10239 | 6.399743 | TGTTCGTCTATGTTAATGTGCCTTA | 58.600 | 36.000 | 0.00 | 0.00 | 0.00 | 2.69 |
6896 | 10249 | 7.493320 | GGATATGGTTGTTGTTCGTCTATGTTA | 59.507 | 37.037 | 0.00 | 0.00 | 0.00 | 2.41 |
7095 | 10458 | 5.470098 | AGGCATACTAGTGACACTTTGTTTG | 59.530 | 40.000 | 14.50 | 17.08 | 0.00 | 2.93 |
7096 | 10459 | 5.621193 | AGGCATACTAGTGACACTTTGTTT | 58.379 | 37.500 | 14.50 | 6.06 | 0.00 | 2.83 |
7101 | 10464 | 7.124298 | TCAAATAGAGGCATACTAGTGACACTT | 59.876 | 37.037 | 14.50 | 0.00 | 30.42 | 3.16 |
7123 | 10486 | 7.064609 | CCATCTTTGATTAACGAGCTAGTCAAA | 59.935 | 37.037 | 0.00 | 5.76 | 36.02 | 2.69 |
![](/static/images/cyverse_long.png)
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.