Multiple sequence alignment - TraesCS7B01G002900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G002900 chr7B 100.000 7201 0 0 1 7201 1209405 1202205 0.000000e+00 13298.0
1 TraesCS7B01G002900 chr7B 98.007 2559 21 17 4040 6595 1027835 1025304 0.000000e+00 4416.0
2 TraesCS7B01G002900 chr7B 88.639 1822 144 24 3668 5453 1259337 1257543 0.000000e+00 2159.0
3 TraesCS7B01G002900 chr7B 80.609 1150 135 53 2171 3253 1261029 1259901 0.000000e+00 808.0
4 TraesCS7B01G002900 chr7B 82.985 717 51 28 5509 6198 1292943 1293615 3.740000e-162 582.0
5 TraesCS7B01G002900 chr7B 90.031 321 27 3 5669 5989 1380647 1380962 1.870000e-110 411.0
6 TraesCS7B01G002900 chr7B 84.096 415 30 22 1470 1849 1261891 1261478 1.140000e-97 368.0
7 TraesCS7B01G002900 chr7B 90.741 216 15 5 3293 3506 1259728 1259516 4.250000e-72 283.0
8 TraesCS7B01G002900 chr7B 84.397 282 32 5 2132 2409 253373003 253373276 4.280000e-67 267.0
9 TraesCS7B01G002900 chr7B 94.706 170 5 3 3447 3615 1259518 1259352 1.990000e-65 261.0
10 TraesCS7B01G002900 chr7B 80.184 217 28 7 945 1148 1262362 1262148 1.620000e-31 148.0
11 TraesCS7B01G002900 chr5B 91.941 2730 145 40 3794 6485 711700249 711702941 0.000000e+00 3753.0
12 TraesCS7B01G002900 chr5B 87.846 1876 159 27 3668 5507 711628321 711630163 0.000000e+00 2137.0
13 TraesCS7B01G002900 chr5B 89.484 1008 46 31 3270 4242 711883874 711884856 0.000000e+00 1219.0
14 TraesCS7B01G002900 chr5B 85.521 1181 89 39 1718 2861 711698200 711699335 0.000000e+00 1158.0
15 TraesCS7B01G002900 chr5B 88.192 813 56 22 859 1658 711697423 711698208 0.000000e+00 933.0
16 TraesCS7B01G002900 chr5B 81.397 1102 120 52 2171 3210 711626685 711627763 0.000000e+00 821.0
17 TraesCS7B01G002900 chr5B 93.159 497 27 5 3077 3571 711699554 711700045 0.000000e+00 723.0
18 TraesCS7B01G002900 chr5B 95.366 410 13 6 6154 6562 711707806 711708210 0.000000e+00 647.0
19 TraesCS7B01G002900 chr5B 91.411 326 19 7 3293 3615 711627987 711628306 8.580000e-119 438.0
20 TraesCS7B01G002900 chr5B 79.901 607 58 31 5509 6088 711548668 711548099 3.150000e-103 387.0
21 TraesCS7B01G002900 chr5B 95.918 196 4 4 2900 3095 711699338 711699529 1.510000e-81 315.0
22 TraesCS7B01G002900 chr5B 92.118 203 15 1 3004 3206 711883672 711883873 1.180000e-72 285.0
23 TraesCS7B01G002900 chr5B 91.626 203 17 0 1470 1672 711625800 711626002 1.530000e-71 281.0
24 TraesCS7B01G002900 chr5B 83.871 279 33 5 2135 2409 141775864 141775594 9.270000e-64 255.0
25 TraesCS7B01G002900 chr5B 83.392 283 34 6 2132 2409 440783126 440783400 4.310000e-62 250.0
26 TraesCS7B01G002900 chr5B 84.766 256 27 6 2158 2409 565845870 565845623 5.580000e-61 246.0
27 TraesCS7B01G002900 chr5B 93.750 160 10 0 3632 3791 711700059 711700218 2.600000e-59 241.0
28 TraesCS7B01G002900 chr5B 77.283 449 45 27 14 450 711696637 711697040 2.040000e-50 211.0
29 TraesCS7B01G002900 chr5B 89.855 138 10 2 6265 6398 711548044 711547907 2.670000e-39 174.0
30 TraesCS7B01G002900 chr5B 81.875 160 19 9 996 1145 711625361 711625520 7.580000e-25 126.0
31 TraesCS7B01G002900 chr5B 91.379 58 4 1 2077 2133 711626535 711626592 2.150000e-10 78.7
32 TraesCS7B01G002900 chr5D 94.335 1871 62 8 3664 5508 561795989 561797841 0.000000e+00 2828.0
33 TraesCS7B01G002900 chr5D 88.717 1870 155 26 3668 5507 561703649 561705492 0.000000e+00 2233.0
34 TraesCS7B01G002900 chr5D 88.504 1183 86 25 1718 2861 561794091 561795262 0.000000e+00 1386.0
35 TraesCS7B01G002900 chr5D 93.521 710 36 6 5669 6371 561798069 561798775 0.000000e+00 1048.0
36 TraesCS7B01G002900 chr5D 82.365 964 112 38 2171 3095 561702022 561702966 0.000000e+00 785.0
37 TraesCS7B01G002900 chr5D 90.872 493 30 9 3077 3567 561795483 561795962 0.000000e+00 647.0
38 TraesCS7B01G002900 chr5D 79.421 933 87 43 494 1387 561792348 561793214 4.880000e-156 562.0
39 TraesCS7B01G002900 chr5D 85.582 541 39 16 5509 6022 561664402 561663874 1.380000e-146 531.0
40 TraesCS7B01G002900 chr5D 82.787 610 61 15 6374 6969 561800074 561800653 8.340000e-139 505.0
41 TraesCS7B01G002900 chr5D 92.615 325 17 5 3293 3615 561703315 561703634 1.830000e-125 460.0
42 TraesCS7B01G002900 chr5D 91.277 321 23 3 5669 5989 561633280 561632965 3.990000e-117 433.0
43 TraesCS7B01G002900 chr5D 96.954 197 4 2 2898 3094 561795263 561795457 5.390000e-86 329.0
44 TraesCS7B01G002900 chr5D 94.634 205 8 3 1458 1662 561793901 561794102 1.510000e-81 315.0
45 TraesCS7B01G002900 chr5D 91.304 207 15 1 1470 1673 561701153 561701359 5.500000e-71 279.0
46 TraesCS7B01G002900 chr5D 88.166 169 17 3 5507 5674 561797872 561798038 1.580000e-46 198.0
47 TraesCS7B01G002900 chr5D 91.367 139 12 0 1708 1846 561701435 561701573 2.650000e-44 191.0
48 TraesCS7B01G002900 chr5D 85.326 184 15 4 5945 6119 561706071 561706251 5.740000e-41 180.0
49 TraesCS7B01G002900 chr5D 85.119 168 20 3 983 1145 561700671 561700838 4.470000e-37 167.0
50 TraesCS7B01G002900 chr5D 86.667 135 12 5 3077 3210 561702991 561703120 2.090000e-30 145.0
51 TraesCS7B01G002900 chr1B 89.896 673 62 3 4489 5161 115774353 115773687 0.000000e+00 861.0
52 TraesCS7B01G002900 chr1B 83.022 642 68 19 3800 4439 115826864 115826262 1.770000e-150 544.0
53 TraesCS7B01G002900 chr1B 92.131 305 15 5 3315 3615 115827333 115827034 8.640000e-114 422.0
54 TraesCS7B01G002900 chr1B 88.319 351 38 1 5157 5507 115755813 115755466 1.120000e-112 418.0
55 TraesCS7B01G002900 chr1B 86.508 378 41 9 6596 6969 30713296 30713667 2.420000e-109 407.0
56 TraesCS7B01G002900 chr1B 77.120 507 47 27 2744 3209 115827998 115827520 5.620000e-56 230.0
57 TraesCS7B01G002900 chr1B 95.161 62 3 0 4444 4505 115774429 115774368 1.650000e-16 99.0
58 TraesCS7B01G002900 chr1B 96.364 55 2 0 634 688 115653311 115653257 2.770000e-14 91.6
59 TraesCS7B01G002900 chr5A 85.714 609 73 11 6598 7201 666218387 666217788 1.320000e-176 630.0
60 TraesCS7B01G002900 chr5A 98.340 241 4 0 6961 7201 428113039 428113279 2.400000e-114 424.0
61 TraesCS7B01G002900 chr5A 99.145 234 2 0 6968 7201 42316722 42316489 8.640000e-114 422.0
62 TraesCS7B01G002900 chr5A 98.340 241 3 1 6961 7201 427253412 427253173 8.640000e-114 422.0
63 TraesCS7B01G002900 chr5A 77.989 368 28 22 2021 2354 516395107 516394759 1.600000e-41 182.0
64 TraesCS7B01G002900 chr5A 97.917 48 1 0 1929 1976 516395173 516395126 4.630000e-12 84.2
65 TraesCS7B01G002900 chr6A 87.941 539 57 7 6666 7201 531375937 531375404 4.740000e-176 628.0
66 TraesCS7B01G002900 chr6A 93.820 178 11 0 2917 3094 558138931 558139108 1.190000e-67 268.0
67 TraesCS7B01G002900 chr6A 84.588 279 31 5 2135 2409 485254503 485254233 4.280000e-67 267.0
68 TraesCS7B01G002900 chr6A 80.965 373 28 21 2018 2354 558138545 558138910 9.270000e-64 255.0
69 TraesCS7B01G002900 chr4B 82.131 582 82 14 6603 7171 50152607 50152035 5.050000e-131 479.0
70 TraesCS7B01G002900 chr4B 84.043 282 33 5 2132 2409 83557333 83557606 1.990000e-65 261.0
71 TraesCS7B01G002900 chr4B 83.721 258 26 9 2158 2409 670159507 670159754 5.620000e-56 230.0
72 TraesCS7B01G002900 chr7A 99.573 234 1 0 6968 7201 652589060 652589293 1.860000e-115 427.0
73 TraesCS7B01G002900 chr7A 94.972 179 9 0 2917 3095 469605441 469605263 1.530000e-71 281.0
74 TraesCS7B01G002900 chr7A 80.163 368 34 10 2021 2354 469605824 469605462 9.340000e-59 239.0
75 TraesCS7B01G002900 chr7A 73.721 430 75 25 1546 1949 642526747 642527164 4.530000e-27 134.0
76 TraesCS7B01G002900 chr7A 97.917 48 1 0 1929 1976 469605890 469605843 4.630000e-12 84.2
77 TraesCS7B01G002900 chr4A 99.573 234 1 0 6968 7201 124991745 124991512 1.860000e-115 427.0
78 TraesCS7B01G002900 chr4A 99.573 234 1 0 6968 7201 133046913 133047146 1.860000e-115 427.0
79 TraesCS7B01G002900 chr4A 85.106 282 30 5 2132 2409 644679117 644679390 1.980000e-70 278.0
80 TraesCS7B01G002900 chr4A 85.106 282 30 5 2132 2409 644727570 644727843 1.980000e-70 278.0
81 TraesCS7B01G002900 chr6B 87.332 371 40 6 6603 6969 84603484 84603117 1.120000e-112 418.0
82 TraesCS7B01G002900 chr6B 84.043 282 33 5 2132 2409 6058355 6058628 1.990000e-65 261.0
83 TraesCS7B01G002900 chr3D 86.772 378 44 5 6594 6969 463681503 463681876 4.020000e-112 416.0
84 TraesCS7B01G002900 chr3D 84.397 282 32 5 2132 2409 23499992 23500265 4.280000e-67 267.0
85 TraesCS7B01G002900 chr4D 86.472 377 45 5 6595 6969 504283283 504283655 6.720000e-110 409.0
86 TraesCS7B01G002900 chr4D 86.053 380 48 4 6591 6968 12695883 12696259 3.130000e-108 403.0
87 TraesCS7B01G002900 chr1D 86.016 379 45 7 6594 6969 418520304 418519931 4.050000e-107 399.0
88 TraesCS7B01G002900 chr3A 93.820 178 11 0 2917 3094 499505249 499505072 1.190000e-67 268.0
89 TraesCS7B01G002900 chr3A 78.478 460 34 25 1929 2354 499505698 499505270 2.600000e-59 241.0
90 TraesCS7B01G002900 chr1A 84.496 258 24 10 2158 2409 535701603 535701850 2.600000e-59 241.0
91 TraesCS7B01G002900 chr1A 84.109 258 24 10 2158 2409 280003577 280003823 4.340000e-57 233.0
92 TraesCS7B01G002900 chr2D 90.476 63 6 0 1469 1531 642817668 642817606 4.630000e-12 84.2
93 TraesCS7B01G002900 chr2B 96.875 32 1 0 281 312 792994891 792994860 4.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G002900 chr7B 1202205 1209405 7200 True 13298.000000 13298 100.000000 1 7201 1 chr7B.!!$R2 7200
1 TraesCS7B01G002900 chr7B 1025304 1027835 2531 True 4416.000000 4416 98.007000 4040 6595 1 chr7B.!!$R1 2555
2 TraesCS7B01G002900 chr7B 1257543 1262362 4819 True 671.166667 2159 86.495833 945 5453 6 chr7B.!!$R3 4508
3 TraesCS7B01G002900 chr7B 1292943 1293615 672 False 582.000000 582 82.985000 5509 6198 1 chr7B.!!$F1 689
4 TraesCS7B01G002900 chr5B 711696637 711702941 6304 False 1047.714286 3753 89.394857 14 6485 7 chr5B.!!$F4 6471
5 TraesCS7B01G002900 chr5B 711883672 711884856 1184 False 752.000000 1219 90.801000 3004 4242 2 chr5B.!!$F5 1238
6 TraesCS7B01G002900 chr5B 711625361 711630163 4802 False 646.950000 2137 87.589000 996 5507 6 chr5B.!!$F3 4511
7 TraesCS7B01G002900 chr5B 711547907 711548668 761 True 280.500000 387 84.878000 5509 6398 2 chr5B.!!$R3 889
8 TraesCS7B01G002900 chr5D 561792348 561800653 8305 False 868.666667 2828 89.910444 494 6969 9 chr5D.!!$F2 6475
9 TraesCS7B01G002900 chr5D 561700671 561706251 5580 False 555.000000 2233 87.935000 983 6119 8 chr5D.!!$F1 5136
10 TraesCS7B01G002900 chr5D 561663874 561664402 528 True 531.000000 531 85.582000 5509 6022 1 chr5D.!!$R2 513
11 TraesCS7B01G002900 chr1B 115773687 115774429 742 True 480.000000 861 92.528500 4444 5161 2 chr1B.!!$R3 717
12 TraesCS7B01G002900 chr1B 115826262 115827998 1736 True 398.666667 544 84.091000 2744 4439 3 chr1B.!!$R4 1695
13 TraesCS7B01G002900 chr5A 666217788 666218387 599 True 630.000000 630 85.714000 6598 7201 1 chr5A.!!$R3 603
14 TraesCS7B01G002900 chr6A 531375404 531375937 533 True 628.000000 628 87.941000 6666 7201 1 chr6A.!!$R2 535
15 TraesCS7B01G002900 chr6A 558138545 558139108 563 False 261.500000 268 87.392500 2018 3094 2 chr6A.!!$F1 1076
16 TraesCS7B01G002900 chr4B 50152035 50152607 572 True 479.000000 479 82.131000 6603 7171 1 chr4B.!!$R1 568
17 TraesCS7B01G002900 chr7A 469605263 469605890 627 True 201.400000 281 91.017333 1929 3095 3 chr7A.!!$R1 1166
18 TraesCS7B01G002900 chr3A 499505072 499505698 626 True 254.500000 268 86.149000 1929 3094 2 chr3A.!!$R1 1165

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
60 61 0.030297 ATGGCATCTCTCCTCCTGGT 60.030 55.0 0.00 0.0 34.23 4.00 F
1660 2549 0.101399 CCATCCAGAGGTTCGTCTCG 59.899 60.0 0.00 0.0 38.71 4.04 F
1710 2599 0.031994 GGCTCATTTTGCGTGGTGTT 59.968 50.0 0.00 0.0 0.00 3.32 F
1716 2605 0.176680 TTTTGCGTGGTGTTGGCATT 59.823 45.0 0.00 0.0 36.44 3.56 F
3306 4767 0.579630 CTGTTGCGCTAACACGTTCA 59.420 50.0 17.55 0.0 44.07 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1691 2580 0.031994 AACACCACGCAAAATGAGCC 59.968 50.000 0.00 0.00 0.00 4.70 R
2888 4143 0.687920 TCCATTCACACCTTACCGCA 59.312 50.000 0.00 0.00 0.00 5.69 R
2889 4144 2.038387 ATCCATTCACACCTTACCGC 57.962 50.000 0.00 0.00 0.00 5.68 R
3335 4796 4.207635 CACAAATCAATGAACTGTGTGCAC 59.792 41.667 10.75 10.75 34.13 4.57 R
6485 9821 6.881065 TCAACACTATGGGAATTTGAAGAGAG 59.119 38.462 0.00 0.00 0.00 3.20 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 9.412460 TCTATCTGATTGTTCCATAAGCAAAAT 57.588 29.630 0.00 0.00 0.00 1.82
56 57 1.680207 GCAAAATGGCATCTCTCCTCC 59.320 52.381 0.00 0.00 0.00 4.30
57 58 2.686118 GCAAAATGGCATCTCTCCTCCT 60.686 50.000 0.00 0.00 0.00 3.69
58 59 2.950309 CAAAATGGCATCTCTCCTCCTG 59.050 50.000 0.00 0.00 0.00 3.86
59 60 1.138568 AATGGCATCTCTCCTCCTGG 58.861 55.000 0.00 0.00 0.00 4.45
60 61 0.030297 ATGGCATCTCTCCTCCTGGT 60.030 55.000 0.00 0.00 34.23 4.00
61 62 0.979709 TGGCATCTCTCCTCCTGGTG 60.980 60.000 0.00 0.00 34.23 4.17
62 63 1.145819 GCATCTCTCCTCCTGGTGC 59.854 63.158 0.00 0.00 34.23 5.01
63 64 1.336632 GCATCTCTCCTCCTGGTGCT 61.337 60.000 0.00 0.00 30.50 4.40
64 65 0.464870 CATCTCTCCTCCTGGTGCTG 59.535 60.000 0.00 0.00 34.23 4.41
65 66 0.690411 ATCTCTCCTCCTGGTGCTGG 60.690 60.000 0.00 0.00 34.23 4.85
66 67 1.611851 CTCTCCTCCTGGTGCTGGT 60.612 63.158 0.00 0.00 34.23 4.00
67 68 1.897225 CTCTCCTCCTGGTGCTGGTG 61.897 65.000 0.00 0.00 34.23 4.17
108 109 3.533606 AGAATCTGTCCATCAAGACCG 57.466 47.619 0.00 0.00 35.83 4.79
110 111 3.515502 AGAATCTGTCCATCAAGACCGAA 59.484 43.478 0.00 0.00 34.30 4.30
139 140 2.703007 ACCACCAAATTAAAAGGCAGCA 59.297 40.909 0.00 0.00 0.00 4.41
140 141 3.135530 ACCACCAAATTAAAAGGCAGCAA 59.864 39.130 0.00 0.00 0.00 3.91
141 142 3.747529 CCACCAAATTAAAAGGCAGCAAG 59.252 43.478 0.00 0.00 0.00 4.01
142 143 3.187022 CACCAAATTAAAAGGCAGCAAGC 59.813 43.478 0.00 0.00 44.65 4.01
163 164 3.544682 GCAAAGCAAAGCAAAGCAAAAAG 59.455 39.130 0.00 0.00 0.00 2.27
164 165 4.672283 GCAAAGCAAAGCAAAGCAAAAAGA 60.672 37.500 0.00 0.00 0.00 2.52
166 167 4.870221 AGCAAAGCAAAGCAAAAAGAAG 57.130 36.364 0.00 0.00 0.00 2.85
202 208 7.016170 GGCTCTCCCTCTCTCTTAATCTTAATT 59.984 40.741 0.00 0.00 0.00 1.40
225 231 5.499004 TTAGTCTCACCACCAGCTTAATT 57.501 39.130 0.00 0.00 0.00 1.40
226 232 6.614694 TTAGTCTCACCACCAGCTTAATTA 57.385 37.500 0.00 0.00 0.00 1.40
227 233 5.091261 AGTCTCACCACCAGCTTAATTAG 57.909 43.478 0.00 0.00 0.00 1.73
258 279 1.780503 AAATGAGCAGCATAACCCCC 58.219 50.000 0.00 0.00 35.78 5.40
259 280 0.929244 AATGAGCAGCATAACCCCCT 59.071 50.000 0.00 0.00 35.78 4.79
261 282 1.152881 GAGCAGCATAACCCCCTGG 60.153 63.158 0.00 0.00 37.80 4.45
262 283 2.834968 GCAGCATAACCCCCTGGC 60.835 66.667 0.00 0.00 33.59 4.85
266 287 2.123726 CATAACCCCCTGGCTGGC 60.124 66.667 4.64 0.00 33.59 4.85
267 288 2.616893 ATAACCCCCTGGCTGGCA 60.617 61.111 4.64 3.18 33.59 4.92
268 289 2.014550 ATAACCCCCTGGCTGGCAT 61.015 57.895 3.74 0.00 33.59 4.40
269 290 2.302517 ATAACCCCCTGGCTGGCATG 62.303 60.000 3.74 1.33 33.59 4.06
274 295 4.753662 CCTGGCTGGCATGGCACT 62.754 66.667 19.43 0.00 37.59 4.40
275 296 2.678934 CTGGCTGGCATGGCACTT 60.679 61.111 19.43 0.00 37.59 3.16
276 297 2.992689 TGGCTGGCATGGCACTTG 60.993 61.111 19.43 10.31 37.59 3.16
277 298 4.446413 GGCTGGCATGGCACTTGC 62.446 66.667 19.43 19.67 39.41 4.01
278 299 3.379445 GCTGGCATGGCACTTGCT 61.379 61.111 19.43 0.00 40.03 3.91
279 300 2.882876 CTGGCATGGCACTTGCTC 59.117 61.111 19.43 4.29 40.03 4.26
280 301 2.677524 TGGCATGGCACTTGCTCC 60.678 61.111 19.43 0.00 40.03 4.70
281 302 2.362120 GGCATGGCACTTGCTCCT 60.362 61.111 15.47 0.00 40.03 3.69
282 303 2.413142 GGCATGGCACTTGCTCCTC 61.413 63.158 15.47 0.00 40.03 3.71
283 304 1.676635 GCATGGCACTTGCTCCTCA 60.677 57.895 5.84 0.00 41.70 3.86
284 305 1.930908 GCATGGCACTTGCTCCTCAC 61.931 60.000 5.84 0.00 41.70 3.51
285 306 0.607217 CATGGCACTTGCTCCTCACA 60.607 55.000 0.38 0.00 41.70 3.58
286 307 0.330604 ATGGCACTTGCTCCTCACAT 59.669 50.000 0.38 0.00 41.70 3.21
287 308 0.321919 TGGCACTTGCTCCTCACATC 60.322 55.000 0.38 0.00 41.70 3.06
288 309 1.364626 GGCACTTGCTCCTCACATCG 61.365 60.000 0.38 0.00 41.70 3.84
289 310 1.975363 GCACTTGCTCCTCACATCGC 61.975 60.000 0.00 0.00 38.21 4.58
290 311 0.671472 CACTTGCTCCTCACATCGCA 60.671 55.000 0.00 0.00 0.00 5.10
291 312 0.251354 ACTTGCTCCTCACATCGCAT 59.749 50.000 0.00 0.00 31.77 4.73
292 313 0.935898 CTTGCTCCTCACATCGCATC 59.064 55.000 0.00 0.00 31.77 3.91
293 314 0.249955 TTGCTCCTCACATCGCATCA 59.750 50.000 0.00 0.00 31.77 3.07
319 340 5.011586 TCACATCACATCACATGGTTGATT 58.988 37.500 0.00 0.00 33.74 2.57
320 341 5.099575 CACATCACATCACATGGTTGATTG 58.900 41.667 0.00 0.00 33.74 2.67
327 350 6.258287 CACATCACATGGTTGATTGTTGTTTT 59.742 34.615 0.00 0.00 33.74 2.43
342 365 5.820131 TGTTGTTTTTATGCTCTGTCACTG 58.180 37.500 0.00 0.00 0.00 3.66
366 396 8.978874 TGCTCACATACTTCCATTTACATTAT 57.021 30.769 0.00 0.00 0.00 1.28
370 400 9.502091 TCACATACTTCCATTTACATTATAGGC 57.498 33.333 0.00 0.00 0.00 3.93
374 404 6.911308 ACTTCCATTTACATTATAGGCCTGT 58.089 36.000 17.99 12.48 0.00 4.00
384 414 2.080654 ATAGGCCTGTCTGTCCTCTC 57.919 55.000 17.99 0.00 0.00 3.20
386 416 0.324275 AGGCCTGTCTGTCCTCTCTC 60.324 60.000 3.11 0.00 0.00 3.20
388 418 1.555967 GCCTGTCTGTCCTCTCTCTT 58.444 55.000 0.00 0.00 0.00 2.85
390 420 2.353605 GCCTGTCTGTCCTCTCTCTTTG 60.354 54.545 0.00 0.00 0.00 2.77
391 421 2.896685 CCTGTCTGTCCTCTCTCTTTGT 59.103 50.000 0.00 0.00 0.00 2.83
392 422 3.056891 CCTGTCTGTCCTCTCTCTTTGTC 60.057 52.174 0.00 0.00 0.00 3.18
394 424 3.161866 GTCTGTCCTCTCTCTTTGTCCT 58.838 50.000 0.00 0.00 0.00 3.85
396 426 3.829601 TCTGTCCTCTCTCTTTGTCCTTC 59.170 47.826 0.00 0.00 0.00 3.46
397 427 3.831911 CTGTCCTCTCTCTTTGTCCTTCT 59.168 47.826 0.00 0.00 0.00 2.85
399 429 5.013547 TGTCCTCTCTCTTTGTCCTTCTAG 58.986 45.833 0.00 0.00 0.00 2.43
401 431 5.124936 GTCCTCTCTCTTTGTCCTTCTAGTC 59.875 48.000 0.00 0.00 0.00 2.59
402 432 4.401202 CCTCTCTCTTTGTCCTTCTAGTCC 59.599 50.000 0.00 0.00 0.00 3.85
403 433 5.261216 CTCTCTCTTTGTCCTTCTAGTCCT 58.739 45.833 0.00 0.00 0.00 3.85
404 434 6.390048 TCTCTCTTTGTCCTTCTAGTCCTA 57.610 41.667 0.00 0.00 0.00 2.94
405 435 6.181908 TCTCTCTTTGTCCTTCTAGTCCTAC 58.818 44.000 0.00 0.00 0.00 3.18
406 436 5.888901 TCTCTTTGTCCTTCTAGTCCTACA 58.111 41.667 0.00 0.00 0.00 2.74
407 437 5.946972 TCTCTTTGTCCTTCTAGTCCTACAG 59.053 44.000 0.00 0.00 0.00 2.74
408 438 5.642165 TCTTTGTCCTTCTAGTCCTACAGT 58.358 41.667 0.00 0.00 0.00 3.55
409 439 6.787170 TCTTTGTCCTTCTAGTCCTACAGTA 58.213 40.000 0.00 0.00 0.00 2.74
410 440 6.658391 TCTTTGTCCTTCTAGTCCTACAGTAC 59.342 42.308 0.00 0.00 0.00 2.73
411 441 5.509832 TGTCCTTCTAGTCCTACAGTACA 57.490 43.478 0.00 0.00 0.00 2.90
412 442 5.498393 TGTCCTTCTAGTCCTACAGTACAG 58.502 45.833 0.00 0.00 0.00 2.74
413 443 5.013913 TGTCCTTCTAGTCCTACAGTACAGT 59.986 44.000 0.00 0.00 0.00 3.55
414 444 6.214208 TGTCCTTCTAGTCCTACAGTACAGTA 59.786 42.308 0.00 0.00 0.00 2.74
425 455 7.064016 GTCCTACAGTACAGTACAGTACAGTAC 59.936 44.444 27.31 27.31 46.04 2.73
438 468 9.467258 GTACAGTACAGTACAGTGAAATTAACA 57.533 33.333 20.17 0.00 42.97 2.41
450 480 7.147312 CAGTGAAATTAACAGAATCCAAAGCA 58.853 34.615 0.00 0.00 0.00 3.91
451 481 7.816031 CAGTGAAATTAACAGAATCCAAAGCAT 59.184 33.333 0.00 0.00 0.00 3.79
452 482 7.816031 AGTGAAATTAACAGAATCCAAAGCATG 59.184 33.333 0.00 0.00 0.00 4.06
453 483 6.591062 TGAAATTAACAGAATCCAAAGCATGC 59.409 34.615 10.51 10.51 0.00 4.06
454 484 4.454728 TTAACAGAATCCAAAGCATGCC 57.545 40.909 15.66 0.00 0.00 4.40
455 485 1.927487 ACAGAATCCAAAGCATGCCA 58.073 45.000 15.66 0.00 0.00 4.92
456 486 2.463752 ACAGAATCCAAAGCATGCCAT 58.536 42.857 15.66 0.00 0.00 4.40
459 489 3.132289 CAGAATCCAAAGCATGCCATCTT 59.868 43.478 15.66 0.00 0.00 2.40
460 490 4.340097 CAGAATCCAAAGCATGCCATCTTA 59.660 41.667 15.66 0.00 0.00 2.10
462 492 5.601313 AGAATCCAAAGCATGCCATCTTATT 59.399 36.000 15.66 7.73 0.00 1.40
463 493 6.779049 AGAATCCAAAGCATGCCATCTTATTA 59.221 34.615 15.66 0.00 0.00 0.98
465 495 4.828939 TCCAAAGCATGCCATCTTATTAGG 59.171 41.667 15.66 2.51 0.00 2.69
466 496 4.021719 CCAAAGCATGCCATCTTATTAGGG 60.022 45.833 15.66 2.28 0.00 3.53
467 497 4.459852 AAGCATGCCATCTTATTAGGGT 57.540 40.909 15.66 0.00 0.00 4.34
468 498 3.759581 AGCATGCCATCTTATTAGGGTG 58.240 45.455 15.66 0.00 0.00 4.61
469 499 3.139025 AGCATGCCATCTTATTAGGGTGT 59.861 43.478 15.66 0.00 0.00 4.16
470 500 3.891366 GCATGCCATCTTATTAGGGTGTT 59.109 43.478 6.36 0.00 0.00 3.32
471 501 4.261741 GCATGCCATCTTATTAGGGTGTTG 60.262 45.833 6.36 0.00 0.00 3.33
472 502 3.897239 TGCCATCTTATTAGGGTGTTGG 58.103 45.455 0.00 0.00 0.00 3.77
473 503 3.268334 TGCCATCTTATTAGGGTGTTGGT 59.732 43.478 0.00 0.00 0.00 3.67
474 504 3.632145 GCCATCTTATTAGGGTGTTGGTG 59.368 47.826 0.00 0.00 0.00 4.17
475 505 4.207165 CCATCTTATTAGGGTGTTGGTGG 58.793 47.826 0.00 0.00 0.00 4.61
476 506 3.359695 TCTTATTAGGGTGTTGGTGGC 57.640 47.619 0.00 0.00 0.00 5.01
477 507 2.025699 TCTTATTAGGGTGTTGGTGGCC 60.026 50.000 0.00 0.00 0.00 5.36
478 508 0.253610 TATTAGGGTGTTGGTGGCCG 59.746 55.000 0.00 0.00 0.00 6.13
479 509 1.493854 ATTAGGGTGTTGGTGGCCGA 61.494 55.000 0.00 0.00 0.00 5.54
480 510 1.493854 TTAGGGTGTTGGTGGCCGAT 61.494 55.000 0.00 0.00 0.00 4.18
481 511 1.906105 TAGGGTGTTGGTGGCCGATC 61.906 60.000 0.00 0.00 0.00 3.69
482 512 2.750237 GGTGTTGGTGGCCGATCC 60.750 66.667 0.00 0.75 0.00 3.36
483 513 2.033448 GTGTTGGTGGCCGATCCA 59.967 61.111 9.59 9.59 44.18 3.41
550 580 9.436957 ACAATAACAGAGTGAAATACTTGGTAG 57.563 33.333 0.00 0.00 40.53 3.18
551 581 9.436957 CAATAACAGAGTGAAATACTTGGTAGT 57.563 33.333 0.00 0.00 40.53 2.73
554 584 6.932947 ACAGAGTGAAATACTTGGTAGTACC 58.067 40.000 12.80 12.80 40.53 3.34
555 585 6.724905 ACAGAGTGAAATACTTGGTAGTACCT 59.275 38.462 20.07 2.88 40.53 3.08
558 588 8.968969 AGAGTGAAATACTTGGTAGTACCTTAG 58.031 37.037 20.07 17.76 40.53 2.18
559 589 8.890410 AGTGAAATACTTGGTAGTACCTTAGA 57.110 34.615 20.07 4.20 39.59 2.10
560 590 8.968969 AGTGAAATACTTGGTAGTACCTTAGAG 58.031 37.037 20.07 13.89 39.59 2.43
561 591 8.196103 GTGAAATACTTGGTAGTACCTTAGAGG 58.804 40.741 20.07 3.14 39.59 3.69
607 660 6.270000 TCACAACTTGATTCCTTTCCTCTCTA 59.730 38.462 0.00 0.00 0.00 2.43
623 676 4.280677 CCTCTCTATAGGGCAACTGAGAAG 59.719 50.000 0.00 0.00 32.55 2.85
688 753 0.994247 ATTGGACATGGACAGCCTCA 59.006 50.000 0.00 0.00 34.31 3.86
690 755 0.325933 TGGACATGGACAGCCTCAAG 59.674 55.000 0.00 0.00 34.31 3.02
693 758 2.027192 GGACATGGACAGCCTCAAGTTA 60.027 50.000 0.00 0.00 34.31 2.24
694 759 3.370953 GGACATGGACAGCCTCAAGTTAT 60.371 47.826 0.00 0.00 34.31 1.89
695 760 4.265073 GACATGGACAGCCTCAAGTTATT 58.735 43.478 0.00 0.00 34.31 1.40
696 761 4.012374 ACATGGACAGCCTCAAGTTATTG 58.988 43.478 0.00 0.00 37.80 1.90
697 762 3.071874 TGGACAGCCTCAAGTTATTGG 57.928 47.619 0.00 0.00 37.02 3.16
698 763 2.642311 TGGACAGCCTCAAGTTATTGGA 59.358 45.455 0.00 0.00 37.02 3.53
700 765 3.559171 GGACAGCCTCAAGTTATTGGACA 60.559 47.826 0.00 0.00 37.02 4.02
702 767 4.012374 ACAGCCTCAAGTTATTGGACATG 58.988 43.478 0.00 0.00 37.02 3.21
703 768 3.379372 CAGCCTCAAGTTATTGGACATGG 59.621 47.826 0.00 0.00 37.02 3.66
704 769 3.266772 AGCCTCAAGTTATTGGACATGGA 59.733 43.478 0.00 0.00 37.02 3.41
705 770 3.378427 GCCTCAAGTTATTGGACATGGAC 59.622 47.826 0.00 0.00 37.02 4.02
706 771 4.588899 CCTCAAGTTATTGGACATGGACA 58.411 43.478 0.00 0.00 37.02 4.02
707 772 4.637534 CCTCAAGTTATTGGACATGGACAG 59.362 45.833 0.00 0.00 37.02 3.51
708 773 4.009675 TCAAGTTATTGGACATGGACAGC 58.990 43.478 0.00 0.00 37.02 4.40
709 774 3.004752 AGTTATTGGACATGGACAGCC 57.995 47.619 0.00 0.00 0.00 4.85
710 775 2.578021 AGTTATTGGACATGGACAGCCT 59.422 45.455 0.00 0.00 34.31 4.58
711 776 2.945668 GTTATTGGACATGGACAGCCTC 59.054 50.000 0.00 0.00 34.31 4.70
712 777 0.994247 ATTGGACATGGACAGCCTCA 59.006 50.000 0.00 0.00 34.31 3.86
713 778 0.770499 TTGGACATGGACAGCCTCAA 59.230 50.000 0.00 0.00 34.31 3.02
714 779 0.994247 TGGACATGGACAGCCTCAAT 59.006 50.000 0.00 0.00 34.31 2.57
715 780 2.195727 TGGACATGGACAGCCTCAATA 58.804 47.619 0.00 0.00 34.31 1.90
716 781 2.575735 TGGACATGGACAGCCTCAATAA 59.424 45.455 0.00 0.00 34.31 1.40
717 782 2.945668 GGACATGGACAGCCTCAATAAC 59.054 50.000 0.00 0.00 34.31 1.89
718 783 3.609853 GACATGGACAGCCTCAATAACA 58.390 45.455 0.00 0.00 34.31 2.41
719 784 3.614092 ACATGGACAGCCTCAATAACAG 58.386 45.455 0.00 0.00 34.31 3.16
720 785 3.264193 ACATGGACAGCCTCAATAACAGA 59.736 43.478 0.00 0.00 34.31 3.41
721 786 3.616956 TGGACAGCCTCAATAACAGAG 57.383 47.619 0.00 0.00 34.31 3.35
722 787 2.906389 TGGACAGCCTCAATAACAGAGT 59.094 45.455 0.00 0.00 34.31 3.24
723 788 3.265791 GGACAGCCTCAATAACAGAGTG 58.734 50.000 0.00 0.00 0.00 3.51
724 789 3.055819 GGACAGCCTCAATAACAGAGTGA 60.056 47.826 0.00 0.00 0.00 3.41
725 790 4.563580 GGACAGCCTCAATAACAGAGTGAA 60.564 45.833 0.00 0.00 30.27 3.18
726 791 4.973168 ACAGCCTCAATAACAGAGTGAAA 58.027 39.130 0.00 0.00 30.27 2.69
734 799 7.094463 CCTCAATAACAGAGTGAAATTCTTGCT 60.094 37.037 0.00 0.00 30.27 3.91
772 840 1.004918 AGCTTTCGCGCACTAACCT 60.005 52.632 8.75 0.00 42.32 3.50
774 842 1.967597 GCTTTCGCGCACTAACCTCC 61.968 60.000 8.75 0.00 0.00 4.30
775 843 0.389948 CTTTCGCGCACTAACCTCCT 60.390 55.000 8.75 0.00 0.00 3.69
777 845 1.248785 TTCGCGCACTAACCTCCTCT 61.249 55.000 8.75 0.00 0.00 3.69
778 846 1.517257 CGCGCACTAACCTCCTCTG 60.517 63.158 8.75 0.00 0.00 3.35
779 847 1.811679 GCGCACTAACCTCCTCTGC 60.812 63.158 0.30 0.00 0.00 4.26
780 848 1.893786 CGCACTAACCTCCTCTGCT 59.106 57.895 0.00 0.00 0.00 4.24
781 849 0.179124 CGCACTAACCTCCTCTGCTC 60.179 60.000 0.00 0.00 0.00 4.26
782 850 1.190643 GCACTAACCTCCTCTGCTCT 58.809 55.000 0.00 0.00 0.00 4.09
865 1009 3.335786 TGTAACTGTTCCTAGGAGGGAGA 59.664 47.826 12.26 0.00 35.59 3.71
867 1011 1.289530 ACTGTTCCTAGGAGGGAGAGG 59.710 57.143 12.26 2.51 38.55 3.69
884 1028 2.110721 AGAGGGCACAAGGAAGGATTTT 59.889 45.455 0.00 0.00 0.00 1.82
886 1030 2.110721 AGGGCACAAGGAAGGATTTTCT 59.889 45.455 0.00 0.00 0.00 2.52
889 1033 2.493675 GCACAAGGAAGGATTTTCTCCC 59.506 50.000 0.00 0.00 46.27 4.30
891 1035 3.760684 CACAAGGAAGGATTTTCTCCCAG 59.239 47.826 0.00 0.00 46.27 4.45
892 1036 3.657727 ACAAGGAAGGATTTTCTCCCAGA 59.342 43.478 0.00 0.00 46.27 3.86
893 1037 4.263683 ACAAGGAAGGATTTTCTCCCAGAG 60.264 45.833 0.00 0.00 46.27 3.35
895 1039 3.919554 AGGAAGGATTTTCTCCCAGAGTT 59.080 43.478 0.00 0.00 46.27 3.01
896 1040 4.355287 AGGAAGGATTTTCTCCCAGAGTTT 59.645 41.667 0.00 0.00 46.27 2.66
897 1041 4.702612 GGAAGGATTTTCTCCCAGAGTTTC 59.297 45.833 0.00 0.00 46.27 2.78
898 1042 4.308526 AGGATTTTCTCCCAGAGTTTCC 57.691 45.455 0.00 0.00 46.27 3.13
944 1088 0.257039 CAAATCCCTACCTGCCTGCT 59.743 55.000 0.00 0.00 0.00 4.24
955 1099 2.183555 GCCTGCTGCATTTGCTCC 59.816 61.111 1.31 0.00 42.66 4.70
997 1145 2.136229 GCCCCCATCCAGCCAAATC 61.136 63.158 0.00 0.00 0.00 2.17
1023 1171 3.071457 ACTTCTTCTTGGCCATTTTTGGG 59.929 43.478 6.09 0.00 0.00 4.12
1024 1172 2.688477 TCTTCTTGGCCATTTTTGGGT 58.312 42.857 6.09 0.00 0.00 4.51
1025 1173 2.632512 TCTTCTTGGCCATTTTTGGGTC 59.367 45.455 6.09 0.00 0.00 4.46
1272 1469 2.502295 CCAAAGCTCTGCTCTTTCTGT 58.498 47.619 0.00 0.00 38.25 3.41
1363 1590 4.216257 TGATTGCTCAAGCTTACTGGTTTC 59.784 41.667 0.00 0.00 42.66 2.78
1374 1601 4.439289 GCTTACTGGTTTCATTGGCATCTC 60.439 45.833 0.00 0.00 0.00 2.75
1393 1641 5.247507 TCTCCAACAATTTCTTGTGTGTG 57.752 39.130 0.00 0.00 44.83 3.82
1394 1642 4.704540 TCTCCAACAATTTCTTGTGTGTGT 59.295 37.500 0.00 0.00 44.83 3.72
1398 1646 4.782019 ACAATTTCTTGTGTGTGTGTGT 57.218 36.364 0.00 0.00 43.92 3.72
1421 2286 1.227438 GTGTGTGTGTGGCGGTAGT 60.227 57.895 0.00 0.00 0.00 2.73
1432 2297 3.893200 TGTGGCGGTAGTAGTAGCATTAT 59.107 43.478 7.51 0.00 0.00 1.28
1435 2300 5.860716 GTGGCGGTAGTAGTAGCATTATAAC 59.139 44.000 7.51 0.00 0.00 1.89
1441 2311 9.059485 CGGTAGTAGTAGCATTATAACGAATTC 57.941 37.037 7.51 0.00 0.00 2.17
1649 2538 1.229625 ACCAGAGGCACCATCCAGA 60.230 57.895 0.00 0.00 0.00 3.86
1650 2539 1.270414 ACCAGAGGCACCATCCAGAG 61.270 60.000 0.00 0.00 0.00 3.35
1651 2540 1.525923 CAGAGGCACCATCCAGAGG 59.474 63.158 0.00 0.00 0.00 3.69
1652 2541 1.081833 AGAGGCACCATCCAGAGGT 59.918 57.895 0.00 0.00 40.85 3.85
1653 2542 0.548682 AGAGGCACCATCCAGAGGTT 60.549 55.000 0.00 0.00 37.23 3.50
1654 2543 0.107459 GAGGCACCATCCAGAGGTTC 60.107 60.000 0.00 0.00 37.23 3.62
1655 2544 1.450312 GGCACCATCCAGAGGTTCG 60.450 63.158 0.00 0.00 37.23 3.95
1656 2545 1.296715 GCACCATCCAGAGGTTCGT 59.703 57.895 0.00 0.00 37.23 3.85
1657 2546 0.741221 GCACCATCCAGAGGTTCGTC 60.741 60.000 0.00 0.00 37.23 4.20
1658 2547 0.898320 CACCATCCAGAGGTTCGTCT 59.102 55.000 0.00 0.00 37.23 4.18
1659 2548 1.134965 CACCATCCAGAGGTTCGTCTC 60.135 57.143 0.00 0.00 37.23 3.36
1660 2549 0.101399 CCATCCAGAGGTTCGTCTCG 59.899 60.000 0.00 0.00 38.71 4.04
1661 2550 0.811915 CATCCAGAGGTTCGTCTCGT 59.188 55.000 0.00 0.00 38.71 4.18
1662 2551 0.811915 ATCCAGAGGTTCGTCTCGTG 59.188 55.000 0.00 0.00 38.71 4.35
1663 2552 0.536687 TCCAGAGGTTCGTCTCGTGT 60.537 55.000 0.00 0.00 38.71 4.49
1664 2553 0.314302 CCAGAGGTTCGTCTCGTGTT 59.686 55.000 0.00 0.00 38.71 3.32
1665 2554 1.269621 CCAGAGGTTCGTCTCGTGTTT 60.270 52.381 0.00 0.00 38.71 2.83
1666 2555 2.030540 CCAGAGGTTCGTCTCGTGTTTA 60.031 50.000 0.00 0.00 38.71 2.01
1667 2556 3.367087 CCAGAGGTTCGTCTCGTGTTTAT 60.367 47.826 0.00 0.00 38.71 1.40
1668 2557 4.235360 CAGAGGTTCGTCTCGTGTTTATT 58.765 43.478 0.00 0.00 38.71 1.40
1669 2558 4.684703 CAGAGGTTCGTCTCGTGTTTATTT 59.315 41.667 0.00 0.00 38.71 1.40
1670 2559 4.684703 AGAGGTTCGTCTCGTGTTTATTTG 59.315 41.667 0.00 0.00 38.71 2.32
1671 2560 4.374399 AGGTTCGTCTCGTGTTTATTTGT 58.626 39.130 0.00 0.00 0.00 2.83
1672 2561 4.446719 AGGTTCGTCTCGTGTTTATTTGTC 59.553 41.667 0.00 0.00 0.00 3.18
1673 2562 4.209703 GGTTCGTCTCGTGTTTATTTGTCA 59.790 41.667 0.00 0.00 0.00 3.58
1674 2563 5.363517 GTTCGTCTCGTGTTTATTTGTCAG 58.636 41.667 0.00 0.00 0.00 3.51
1675 2564 3.427528 TCGTCTCGTGTTTATTTGTCAGC 59.572 43.478 0.00 0.00 0.00 4.26
1676 2565 3.183574 CGTCTCGTGTTTATTTGTCAGCA 59.816 43.478 0.00 0.00 0.00 4.41
1677 2566 4.664139 CGTCTCGTGTTTATTTGTCAGCAG 60.664 45.833 0.00 0.00 0.00 4.24
1678 2567 4.211374 GTCTCGTGTTTATTTGTCAGCAGT 59.789 41.667 0.00 0.00 0.00 4.40
1679 2568 4.211164 TCTCGTGTTTATTTGTCAGCAGTG 59.789 41.667 0.00 0.00 0.00 3.66
1680 2569 3.874543 TCGTGTTTATTTGTCAGCAGTGT 59.125 39.130 0.00 0.00 0.00 3.55
1681 2570 4.025229 TCGTGTTTATTTGTCAGCAGTGTC 60.025 41.667 0.00 0.00 0.00 3.67
1682 2571 4.211389 GTGTTTATTTGTCAGCAGTGTCG 58.789 43.478 0.00 0.00 0.00 4.35
1683 2572 3.249799 TGTTTATTTGTCAGCAGTGTCGG 59.750 43.478 0.00 0.00 0.00 4.79
1684 2573 1.438651 TATTTGTCAGCAGTGTCGGC 58.561 50.000 0.00 0.00 0.00 5.54
1685 2574 1.568612 ATTTGTCAGCAGTGTCGGCG 61.569 55.000 0.00 0.00 36.08 6.46
1686 2575 4.662961 TGTCAGCAGTGTCGGCGG 62.663 66.667 7.21 0.00 36.08 6.13
1687 2576 4.664677 GTCAGCAGTGTCGGCGGT 62.665 66.667 7.21 0.00 36.08 5.68
1688 2577 4.662961 TCAGCAGTGTCGGCGGTG 62.663 66.667 7.21 0.78 36.08 4.94
1699 2588 2.676471 GGCGGTGGTGGCTCATTT 60.676 61.111 0.00 0.00 0.00 2.32
1700 2589 2.275380 GGCGGTGGTGGCTCATTTT 61.275 57.895 0.00 0.00 0.00 1.82
1701 2590 1.080569 GCGGTGGTGGCTCATTTTG 60.081 57.895 0.00 0.00 0.00 2.44
1702 2591 1.080569 CGGTGGTGGCTCATTTTGC 60.081 57.895 0.00 0.00 0.00 3.68
1703 2592 1.080569 GGTGGTGGCTCATTTTGCG 60.081 57.895 0.00 0.00 0.00 4.85
1704 2593 1.659794 GTGGTGGCTCATTTTGCGT 59.340 52.632 0.00 0.00 0.00 5.24
1705 2594 0.664166 GTGGTGGCTCATTTTGCGTG 60.664 55.000 0.00 0.00 0.00 5.34
1706 2595 1.080569 GGTGGCTCATTTTGCGTGG 60.081 57.895 0.00 0.00 0.00 4.94
1707 2596 1.659794 GTGGCTCATTTTGCGTGGT 59.340 52.632 0.00 0.00 0.00 4.16
1708 2597 0.664166 GTGGCTCATTTTGCGTGGTG 60.664 55.000 0.00 0.00 0.00 4.17
1709 2598 1.106351 TGGCTCATTTTGCGTGGTGT 61.106 50.000 0.00 0.00 0.00 4.16
1710 2599 0.031994 GGCTCATTTTGCGTGGTGTT 59.968 50.000 0.00 0.00 0.00 3.32
1711 2600 1.130955 GCTCATTTTGCGTGGTGTTG 58.869 50.000 0.00 0.00 0.00 3.33
1712 2601 1.769733 CTCATTTTGCGTGGTGTTGG 58.230 50.000 0.00 0.00 0.00 3.77
1713 2602 0.249238 TCATTTTGCGTGGTGTTGGC 60.249 50.000 0.00 0.00 0.00 4.52
1714 2603 0.529337 CATTTTGCGTGGTGTTGGCA 60.529 50.000 0.00 0.00 34.35 4.92
1715 2604 0.392336 ATTTTGCGTGGTGTTGGCAT 59.608 45.000 0.00 0.00 36.44 4.40
1716 2605 0.176680 TTTTGCGTGGTGTTGGCATT 59.823 45.000 0.00 0.00 36.44 3.56
1797 2802 1.969923 GAGATACTGCAGCTCCAGGAT 59.030 52.381 15.27 0.53 39.09 3.24
1849 2854 4.318332 TGGACTCAAATCTGTAAGTGCAG 58.682 43.478 0.00 0.00 35.53 4.41
1856 2861 7.497249 ACTCAAATCTGTAAGTGCAGGATTATC 59.503 37.037 0.00 0.00 37.12 1.75
1859 2864 7.976135 AATCTGTAAGTGCAGGATTATCATC 57.024 36.000 0.00 0.00 37.12 2.92
1862 2875 8.427902 TCTGTAAGTGCAGGATTATCATCTAT 57.572 34.615 0.00 0.00 37.12 1.98
1864 2877 9.149225 CTGTAAGTGCAGGATTATCATCTATTC 57.851 37.037 0.00 0.00 33.11 1.75
1976 3011 1.409427 GACTCCTCCATGGAAGGTACG 59.591 57.143 17.00 13.24 45.63 3.67
1977 3012 1.273098 ACTCCTCCATGGAAGGTACGT 60.273 52.381 17.00 13.76 45.63 3.57
1978 3013 2.024655 ACTCCTCCATGGAAGGTACGTA 60.025 50.000 17.00 0.00 45.63 3.57
1979 3014 3.231818 CTCCTCCATGGAAGGTACGTAT 58.768 50.000 17.00 0.00 45.63 3.06
1980 3015 4.141088 ACTCCTCCATGGAAGGTACGTATA 60.141 45.833 17.00 1.40 45.63 1.47
1981 3016 4.806892 TCCTCCATGGAAGGTACGTATAA 58.193 43.478 17.00 0.00 42.94 0.98
1982 3017 4.831155 TCCTCCATGGAAGGTACGTATAAG 59.169 45.833 17.00 0.00 42.94 1.73
1983 3018 4.831155 CCTCCATGGAAGGTACGTATAAGA 59.169 45.833 17.00 0.00 38.35 2.10
2009 3072 3.316308 GCTACCGATTTCATTCCTTGCAT 59.684 43.478 0.00 0.00 0.00 3.96
2019 3082 3.193903 TCATTCCTTGCATGGTCACAATG 59.806 43.478 17.54 17.73 0.00 2.82
2037 3100 7.173218 GTCACAATGTCTACCAAGAAATCTTCA 59.827 37.037 0.00 0.00 33.11 3.02
2152 3315 5.011125 GCTGTGGTAGTACATGATAGTGGAT 59.989 44.000 0.00 0.00 0.00 3.41
2166 3329 9.725019 CATGATAGTGGATGGCTTAAAAGTATA 57.275 33.333 0.00 0.00 0.00 1.47
2188 3390 1.694844 TATGGTTGATGCATGGCCTG 58.305 50.000 2.46 0.34 0.00 4.85
2198 3401 2.378038 TGCATGGCCTGTCTTTATTCC 58.622 47.619 3.32 0.00 0.00 3.01
2213 3419 9.403583 TGTCTTTATTCCTGTTTATACATTCCC 57.596 33.333 0.00 0.00 32.86 3.97
2214 3420 9.628500 GTCTTTATTCCTGTTTATACATTCCCT 57.372 33.333 0.00 0.00 32.86 4.20
2300 3512 1.670811 AGTGCACAAGTTTTCAGGACG 59.329 47.619 21.04 0.00 0.00 4.79
2311 3523 1.710013 TTCAGGACGATTCGCAACTC 58.290 50.000 5.86 0.00 0.00 3.01
2416 3632 7.926674 TCCGTCGATAAATATACCTGACATA 57.073 36.000 0.00 0.00 0.00 2.29
2450 3666 3.691118 GCAGCAAGACAAGTTATGATCCA 59.309 43.478 0.00 0.00 0.00 3.41
2494 3710 2.635427 TGTACAAGGTATGGCTGTGTCA 59.365 45.455 0.00 0.00 0.00 3.58
2619 3848 2.996621 GCAGAATGACACTGGAGTACAC 59.003 50.000 0.00 0.00 39.69 2.90
2642 3871 7.011482 ACACGAGGAGCATTCAAAGTATTTATC 59.989 37.037 0.00 0.00 35.03 1.75
2683 3913 7.466746 TTCTCCATGATGTTTTCCTTAAAGG 57.533 36.000 0.00 0.00 36.46 3.11
2688 3918 6.536224 CCATGATGTTTTCCTTAAAGGCATTC 59.464 38.462 0.00 0.00 34.61 2.67
2888 4143 9.571816 TTTTGGAATTTCCTTTTTATCTGCATT 57.428 25.926 16.25 0.00 37.46 3.56
2889 4144 8.550710 TTGGAATTTCCTTTTTATCTGCATTG 57.449 30.769 16.25 0.00 37.46 2.82
2890 4145 6.594937 TGGAATTTCCTTTTTATCTGCATTGC 59.405 34.615 16.25 0.46 37.46 3.56
2915 4171 7.201750 GCGGTAAGGTGTGAATGGATTTATTTA 60.202 37.037 0.00 0.00 0.00 1.40
3030 4286 4.202441 CTGTAGCTGCTGGGTTTGATATT 58.798 43.478 13.43 0.00 0.00 1.28
3101 4401 5.580691 CACGCTTGATGTAAGTATCTTTCCA 59.419 40.000 0.00 0.00 38.70 3.53
3113 4413 9.778741 GTAAGTATCTTTCCATTGGATATGACA 57.221 33.333 6.15 0.00 0.00 3.58
3163 4463 1.843992 CTGCTGATTAATTTGCGCCC 58.156 50.000 4.18 0.00 0.00 6.13
3210 4510 3.793797 TTGCATTCCATTCTGATGCTG 57.206 42.857 8.73 0.00 38.88 4.41
3212 4512 2.949644 TGCATTCCATTCTGATGCTGAG 59.050 45.455 8.73 0.00 38.88 3.35
3300 4761 4.935205 AGTATCAAATCTGTTGCGCTAACA 59.065 37.500 19.42 19.42 46.62 2.41
3301 4762 3.536158 TCAAATCTGTTGCGCTAACAC 57.464 42.857 17.55 6.91 44.07 3.32
3302 4763 2.096466 TCAAATCTGTTGCGCTAACACG 60.096 45.455 17.55 14.25 44.07 4.49
3305 4766 0.856641 TCTGTTGCGCTAACACGTTC 59.143 50.000 17.55 0.00 44.07 3.95
3306 4767 0.579630 CTGTTGCGCTAACACGTTCA 59.420 50.000 17.55 0.00 44.07 3.18
3307 4768 1.194547 CTGTTGCGCTAACACGTTCAT 59.805 47.619 17.55 0.00 44.07 2.57
3310 4771 1.503294 TGCGCTAACACGTTCATTGA 58.497 45.000 9.73 0.00 34.88 2.57
3335 4796 6.801539 TTGCTATCAATTAATAGGAAGGCG 57.198 37.500 0.00 0.00 35.44 5.52
3407 4871 3.760684 GGATTGATGTTGAACCTGAAGCT 59.239 43.478 0.00 0.00 0.00 3.74
3419 4883 1.404717 CCTGAAGCTATGTCTGCACGT 60.405 52.381 0.00 0.00 0.00 4.49
3556 5077 5.012251 TGGTGCCATGACTTAACTTACTACA 59.988 40.000 0.00 0.00 0.00 2.74
3584 5107 8.417106 TCCAAATGCTCACTTTGTTTGTATTTA 58.583 29.630 0.00 0.00 32.83 1.40
3629 5152 7.870445 AGCGGATTTTGTATGTTTTGTATTTGT 59.130 29.630 0.00 0.00 0.00 2.83
3630 5153 9.130312 GCGGATTTTGTATGTTTTGTATTTGTA 57.870 29.630 0.00 0.00 0.00 2.41
3783 5310 4.757657 TGCCTTCTGCTTATTTTTACACGA 59.242 37.500 0.00 0.00 42.00 4.35
3791 5320 9.176181 TCTGCTTATTTTTACACGACAATTTTC 57.824 29.630 0.00 0.00 0.00 2.29
3804 5361 7.747357 ACACGACAATTTTCCGTTATTATTGTC 59.253 33.333 13.46 13.46 45.71 3.18
3898 5458 4.873746 TTACTGTGAGAGAGAACTTGGG 57.126 45.455 0.00 0.00 0.00 4.12
4015 5593 1.500303 TGGGCAATGCATCCTCCTTAT 59.500 47.619 7.79 0.00 0.00 1.73
6459 9795 2.995283 TCTGTGGATCAGCTGAATTGG 58.005 47.619 22.50 9.20 43.32 3.16
6467 9803 4.038402 GGATCAGCTGAATTGGTTTATGGG 59.962 45.833 22.50 0.00 0.00 4.00
6542 9879 8.210946 CCTTTTTAGGGGAAAATGAGAGTTTTT 58.789 33.333 0.00 0.00 36.89 1.94
6568 9905 1.072331 ACAAGAGAATCCAACCGCTGT 59.928 47.619 0.00 0.00 33.66 4.40
6591 9928 3.009143 GGGTGAACTGGTTCTTCCATAGT 59.991 47.826 19.93 0.00 46.12 2.12
6595 9932 6.040504 GGTGAACTGGTTCTTCCATAGTTTTT 59.959 38.462 13.54 0.00 46.12 1.94
6658 9995 0.041047 TGACAGTACGACGAACACCG 60.041 55.000 0.00 0.00 45.44 4.94
6662 9999 0.667993 AGTACGACGAACACCGGAAA 59.332 50.000 9.46 0.00 43.93 3.13
6663 10000 1.270550 AGTACGACGAACACCGGAAAT 59.729 47.619 9.46 0.00 43.93 2.17
6664 10001 2.487762 AGTACGACGAACACCGGAAATA 59.512 45.455 9.46 0.00 43.93 1.40
6676 10016 9.012448 CGAACACCGGAAATAATAAAAATTACC 57.988 33.333 9.46 0.00 33.91 2.85
6690 10030 9.813826 AATAAAAATTACCTCCAGATCCATAGG 57.186 33.333 3.83 3.83 35.14 2.57
6711 10051 1.200716 CCACCTAGCGACGACTACAAA 59.799 52.381 0.00 0.00 0.00 2.83
6722 10062 1.455786 CGACTACAAACACTGAAGCGG 59.544 52.381 0.00 0.00 0.00 5.52
6753 10093 3.227276 CGCCGTCATAGCCCCTCT 61.227 66.667 0.00 0.00 0.00 3.69
6756 10109 1.403687 GCCGTCATAGCCCCTCTCTT 61.404 60.000 0.00 0.00 0.00 2.85
6782 10135 0.454196 GTCGGGCACAACTTGTTGTT 59.546 50.000 15.46 0.53 39.92 2.83
6795 10148 5.097742 ACTTGTTGTTGGATATGATCGGA 57.902 39.130 0.00 0.00 0.00 4.55
6802 10155 5.116180 TGTTGGATATGATCGGAAAGTCAC 58.884 41.667 0.00 0.00 0.00 3.67
6814 10167 0.396811 AAAGTCACCGTGCTAAGGCT 59.603 50.000 0.00 0.00 39.59 4.58
6847 10200 0.678366 ACACCAGAACAACAACCGCA 60.678 50.000 0.00 0.00 0.00 5.69
6853 10206 0.042448 GAACAACAACCGCAGTCGAC 60.042 55.000 7.70 7.70 38.10 4.20
6886 10239 7.184067 ACGTAGATTAAAAGGATCCAACTCT 57.816 36.000 15.82 9.15 0.00 3.24
6896 10249 3.525199 AGGATCCAACTCTAAGGCACATT 59.475 43.478 15.82 0.00 0.00 2.71
7101 10464 8.389779 ACATGTGTGAATACATAGACAAACAA 57.610 30.769 0.00 0.00 39.17 2.83
7123 10486 6.381420 ACAAAGTGTCACTAGTATGCCTCTAT 59.619 38.462 5.77 0.00 0.00 1.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.269183 AGATAGATCTGATCTAGGGCGTG 58.731 47.826 26.31 0.00 44.44 5.34
1 2 4.584638 AGATAGATCTGATCTAGGGCGT 57.415 45.455 26.31 13.57 44.44 5.68
42 43 0.979709 CACCAGGAGGAGAGATGCCA 60.980 60.000 0.00 0.00 38.69 4.92
56 57 2.981909 CACCAGCACCAGCACCAG 60.982 66.667 0.00 0.00 45.49 4.00
58 59 4.962836 AGCACCAGCACCAGCACC 62.963 66.667 0.00 0.00 45.49 5.01
59 60 3.667282 CAGCACCAGCACCAGCAC 61.667 66.667 0.00 0.00 45.49 4.40
62 63 2.416244 CTTTGCAGCACCAGCACCAG 62.416 60.000 0.00 0.00 45.49 4.00
63 64 2.441717 TTTGCAGCACCAGCACCA 60.442 55.556 0.00 0.00 45.49 4.17
64 65 1.737355 TTCTTTGCAGCACCAGCACC 61.737 55.000 0.00 0.00 45.49 5.01
65 66 0.316204 ATTCTTTGCAGCACCAGCAC 59.684 50.000 0.00 0.00 45.49 4.40
66 67 1.908344 TATTCTTTGCAGCACCAGCA 58.092 45.000 0.00 0.00 45.49 4.41
67 68 4.336433 TCTTATATTCTTTGCAGCACCAGC 59.664 41.667 0.00 0.00 42.56 4.85
108 109 7.011016 CCTTTTAATTTGGTGGTTGAGTGTTTC 59.989 37.037 0.00 0.00 0.00 2.78
110 111 6.345298 CCTTTTAATTTGGTGGTTGAGTGTT 58.655 36.000 0.00 0.00 0.00 3.32
139 140 2.027003 TGCTTTGCTTTGCTTTGCTT 57.973 40.000 0.00 0.00 0.00 3.91
140 141 2.027003 TTGCTTTGCTTTGCTTTGCT 57.973 40.000 0.00 0.00 0.00 3.91
141 142 2.828874 TTTGCTTTGCTTTGCTTTGC 57.171 40.000 0.00 0.00 0.00 3.68
142 143 4.972201 TCTTTTTGCTTTGCTTTGCTTTG 58.028 34.783 0.00 0.00 0.00 2.77
143 144 5.625921 TTCTTTTTGCTTTGCTTTGCTTT 57.374 30.435 0.00 0.00 0.00 3.51
144 145 4.437794 GCTTCTTTTTGCTTTGCTTTGCTT 60.438 37.500 0.00 0.00 0.00 3.91
145 146 3.064408 GCTTCTTTTTGCTTTGCTTTGCT 59.936 39.130 0.00 0.00 0.00 3.91
146 147 3.064408 AGCTTCTTTTTGCTTTGCTTTGC 59.936 39.130 0.00 0.00 35.86 3.68
147 148 4.870221 AGCTTCTTTTTGCTTTGCTTTG 57.130 36.364 0.00 0.00 35.86 2.77
163 164 1.809547 GGAGAGCCAACAAGAAGCTTC 59.190 52.381 19.11 19.11 36.87 3.86
164 165 1.546548 GGGAGAGCCAACAAGAAGCTT 60.547 52.381 0.00 0.00 36.87 3.74
166 167 0.037447 AGGGAGAGCCAACAAGAAGC 59.963 55.000 0.00 0.00 35.15 3.86
202 208 4.967084 TTAAGCTGGTGGTGAGACTAAA 57.033 40.909 0.00 0.00 0.00 1.85
204 210 6.222038 CTAATTAAGCTGGTGGTGAGACTA 57.778 41.667 0.00 0.00 0.00 2.59
225 231 2.170166 CTCATTTTGGCTGGTTGGCTA 58.830 47.619 0.00 0.00 42.34 3.93
226 232 0.971386 CTCATTTTGGCTGGTTGGCT 59.029 50.000 0.00 0.00 42.34 4.75
227 233 0.671472 GCTCATTTTGGCTGGTTGGC 60.671 55.000 0.00 0.00 42.18 4.52
228 234 0.680618 TGCTCATTTTGGCTGGTTGG 59.319 50.000 0.00 0.00 0.00 3.77
229 235 1.938016 GCTGCTCATTTTGGCTGGTTG 60.938 52.381 0.00 0.00 0.00 3.77
230 236 0.319405 GCTGCTCATTTTGGCTGGTT 59.681 50.000 0.00 0.00 0.00 3.67
231 237 0.828762 TGCTGCTCATTTTGGCTGGT 60.829 50.000 0.00 0.00 0.00 4.00
232 238 0.535335 ATGCTGCTCATTTTGGCTGG 59.465 50.000 0.00 0.00 29.16 4.85
258 279 2.678934 AAGTGCCATGCCAGCCAG 60.679 61.111 0.00 0.00 0.00 4.85
259 280 2.992689 CAAGTGCCATGCCAGCCA 60.993 61.111 0.00 0.00 0.00 4.75
261 282 3.352338 GAGCAAGTGCCATGCCAGC 62.352 63.158 0.00 0.00 44.91 4.85
262 283 2.707849 GGAGCAAGTGCCATGCCAG 61.708 63.158 0.00 0.00 44.91 4.85
266 287 0.607217 TGTGAGGAGCAAGTGCCATG 60.607 55.000 0.00 0.00 43.38 3.66
267 288 0.330604 ATGTGAGGAGCAAGTGCCAT 59.669 50.000 0.00 0.00 43.38 4.40
268 289 0.321919 GATGTGAGGAGCAAGTGCCA 60.322 55.000 0.00 0.00 43.38 4.92
269 290 1.364626 CGATGTGAGGAGCAAGTGCC 61.365 60.000 0.00 0.00 43.38 5.01
270 291 1.975363 GCGATGTGAGGAGCAAGTGC 61.975 60.000 0.00 0.00 42.49 4.40
271 292 0.671472 TGCGATGTGAGGAGCAAGTG 60.671 55.000 0.00 0.00 36.60 3.16
272 293 0.251354 ATGCGATGTGAGGAGCAAGT 59.749 50.000 0.00 0.00 43.19 3.16
273 294 0.935898 GATGCGATGTGAGGAGCAAG 59.064 55.000 0.00 0.00 43.19 4.01
274 295 0.249955 TGATGCGATGTGAGGAGCAA 59.750 50.000 0.00 0.00 43.19 3.91
275 296 0.460811 GTGATGCGATGTGAGGAGCA 60.461 55.000 0.00 0.00 44.13 4.26
276 297 0.460811 TGTGATGCGATGTGAGGAGC 60.461 55.000 0.00 0.00 0.00 4.70
277 298 2.133553 GATGTGATGCGATGTGAGGAG 58.866 52.381 0.00 0.00 0.00 3.69
278 299 1.481772 TGATGTGATGCGATGTGAGGA 59.518 47.619 0.00 0.00 0.00 3.71
279 300 1.596260 GTGATGTGATGCGATGTGAGG 59.404 52.381 0.00 0.00 0.00 3.86
280 301 2.273557 TGTGATGTGATGCGATGTGAG 58.726 47.619 0.00 0.00 0.00 3.51
281 302 2.383368 TGTGATGTGATGCGATGTGA 57.617 45.000 0.00 0.00 0.00 3.58
282 303 2.610374 TGATGTGATGTGATGCGATGTG 59.390 45.455 0.00 0.00 0.00 3.21
283 304 2.610833 GTGATGTGATGTGATGCGATGT 59.389 45.455 0.00 0.00 0.00 3.06
284 305 2.610374 TGTGATGTGATGTGATGCGATG 59.390 45.455 0.00 0.00 0.00 3.84
285 306 2.908916 TGTGATGTGATGTGATGCGAT 58.091 42.857 0.00 0.00 0.00 4.58
286 307 2.383368 TGTGATGTGATGTGATGCGA 57.617 45.000 0.00 0.00 0.00 5.10
287 308 2.610374 TGATGTGATGTGATGTGATGCG 59.390 45.455 0.00 0.00 0.00 4.73
288 309 3.375922 TGTGATGTGATGTGATGTGATGC 59.624 43.478 0.00 0.00 0.00 3.91
289 310 5.505654 CCATGTGATGTGATGTGATGTGATG 60.506 44.000 0.00 0.00 0.00 3.07
290 311 4.578928 CCATGTGATGTGATGTGATGTGAT 59.421 41.667 0.00 0.00 0.00 3.06
291 312 3.942748 CCATGTGATGTGATGTGATGTGA 59.057 43.478 0.00 0.00 0.00 3.58
292 313 3.692593 ACCATGTGATGTGATGTGATGTG 59.307 43.478 0.00 0.00 0.00 3.21
293 314 3.959293 ACCATGTGATGTGATGTGATGT 58.041 40.909 0.00 0.00 0.00 3.06
319 340 5.733091 GCAGTGACAGAGCATAAAAACAACA 60.733 40.000 0.00 0.00 0.00 3.33
320 341 4.676924 GCAGTGACAGAGCATAAAAACAAC 59.323 41.667 0.00 0.00 0.00 3.32
327 350 2.299867 TGTGAGCAGTGACAGAGCATAA 59.700 45.455 0.00 0.00 0.00 1.90
370 400 2.896685 ACAAAGAGAGAGGACAGACAGG 59.103 50.000 0.00 0.00 0.00 4.00
374 404 3.534357 AGGACAAAGAGAGAGGACAGA 57.466 47.619 0.00 0.00 0.00 3.41
384 414 5.712917 ACTGTAGGACTAGAAGGACAAAGAG 59.287 44.000 0.00 0.00 0.00 2.85
386 416 5.986501 ACTGTAGGACTAGAAGGACAAAG 57.013 43.478 0.00 0.00 0.00 2.77
388 418 5.884322 TGTACTGTAGGACTAGAAGGACAA 58.116 41.667 0.00 0.00 0.00 3.18
390 420 5.499313 ACTGTACTGTAGGACTAGAAGGAC 58.501 45.833 3.21 0.00 0.00 3.85
391 421 5.775813 ACTGTACTGTAGGACTAGAAGGA 57.224 43.478 3.21 0.00 0.00 3.36
392 422 6.413052 TGTACTGTACTGTAGGACTAGAAGG 58.587 44.000 17.98 0.00 30.11 3.46
394 424 7.013823 ACTGTACTGTACTGTAGGACTAGAA 57.986 40.000 23.50 0.00 38.78 2.10
396 426 7.326454 TGTACTGTACTGTACTGTAGGACTAG 58.674 42.308 30.96 13.56 41.63 2.57
397 427 7.038729 ACTGTACTGTACTGTACTGTAGGACTA 60.039 40.741 33.83 17.47 46.32 2.59
399 429 5.936956 ACTGTACTGTACTGTACTGTAGGAC 59.063 44.000 33.83 21.58 46.32 3.85
408 438 7.806409 TTTCACTGTACTGTACTGTACTGTA 57.194 36.000 33.99 24.76 46.39 2.74
410 440 9.687210 TTAATTTCACTGTACTGTACTGTACTG 57.313 33.333 30.70 30.70 42.22 2.74
411 441 9.688592 GTTAATTTCACTGTACTGTACTGTACT 57.311 33.333 30.96 17.29 42.22 2.73
412 442 9.467258 TGTTAATTTCACTGTACTGTACTGTAC 57.533 33.333 27.19 27.19 42.10 2.90
413 443 9.687210 CTGTTAATTTCACTGTACTGTACTGTA 57.313 33.333 24.04 13.43 38.55 2.74
414 444 8.418662 TCTGTTAATTTCACTGTACTGTACTGT 58.581 33.333 20.48 20.48 40.80 3.55
425 455 7.147312 TGCTTTGGATTCTGTTAATTTCACTG 58.853 34.615 0.00 0.00 0.00 3.66
438 468 3.028094 AGATGGCATGCTTTGGATTCT 57.972 42.857 18.92 6.67 0.00 2.40
450 480 4.079212 ACCAACACCCTAATAAGATGGCAT 60.079 41.667 0.00 0.00 0.00 4.40
451 481 3.268334 ACCAACACCCTAATAAGATGGCA 59.732 43.478 0.00 0.00 0.00 4.92
452 482 3.632145 CACCAACACCCTAATAAGATGGC 59.368 47.826 0.00 0.00 0.00 4.40
453 483 4.207165 CCACCAACACCCTAATAAGATGG 58.793 47.826 0.00 0.00 0.00 3.51
454 484 3.632145 GCCACCAACACCCTAATAAGATG 59.368 47.826 0.00 0.00 0.00 2.90
455 485 3.372675 GGCCACCAACACCCTAATAAGAT 60.373 47.826 0.00 0.00 0.00 2.40
456 486 2.025699 GGCCACCAACACCCTAATAAGA 60.026 50.000 0.00 0.00 0.00 2.10
459 489 0.253610 CGGCCACCAACACCCTAATA 59.746 55.000 2.24 0.00 0.00 0.98
460 490 1.001393 CGGCCACCAACACCCTAAT 60.001 57.895 2.24 0.00 0.00 1.73
462 492 1.906105 GATCGGCCACCAACACCCTA 61.906 60.000 2.24 0.00 0.00 3.53
463 493 3.256960 ATCGGCCACCAACACCCT 61.257 61.111 2.24 0.00 0.00 4.34
465 495 2.750237 GGATCGGCCACCAACACC 60.750 66.667 2.24 0.00 36.34 4.16
466 496 2.033448 TGGATCGGCCACCAACAC 59.967 61.111 2.24 0.00 43.33 3.32
474 504 9.705290 ATTTATTTATTTATTGTTGGATCGGCC 57.295 29.630 0.00 0.00 37.10 6.13
531 561 7.171630 AGGTACTACCAAGTATTTCACTCTG 57.828 40.000 8.01 0.00 41.95 3.35
540 570 5.774179 TGCCTCTAAGGTACTACCAAGTAT 58.226 41.667 8.01 0.00 41.95 2.12
546 576 9.872721 GATTTATTATGCCTCTAAGGTACTACC 57.127 37.037 0.00 0.00 38.49 3.18
550 580 6.313164 GCGGATTTATTATGCCTCTAAGGTAC 59.687 42.308 0.00 0.00 37.80 3.34
551 581 6.403878 GCGGATTTATTATGCCTCTAAGGTA 58.596 40.000 0.00 0.00 37.80 3.08
552 582 5.246307 GCGGATTTATTATGCCTCTAAGGT 58.754 41.667 0.00 0.00 37.80 3.50
553 583 4.636206 GGCGGATTTATTATGCCTCTAAGG 59.364 45.833 0.00 0.00 42.44 2.69
554 584 4.330074 CGGCGGATTTATTATGCCTCTAAG 59.670 45.833 0.00 0.00 43.54 2.18
555 585 4.020928 TCGGCGGATTTATTATGCCTCTAA 60.021 41.667 7.21 0.00 43.54 2.10
558 588 2.695359 TCGGCGGATTTATTATGCCTC 58.305 47.619 7.21 0.00 43.54 4.70
559 589 2.851263 TCGGCGGATTTATTATGCCT 57.149 45.000 7.21 0.00 43.54 4.75
560 590 3.907894 TTTCGGCGGATTTATTATGCC 57.092 42.857 7.21 0.00 42.29 4.40
561 591 5.342259 GTGATTTTCGGCGGATTTATTATGC 59.658 40.000 7.21 0.00 0.00 3.14
607 660 3.387962 TCATCCTTCTCAGTTGCCCTAT 58.612 45.455 0.00 0.00 0.00 2.57
623 676 7.148507 CGGTGAGCTTCTGATTTATATTCATCC 60.149 40.741 0.00 0.00 0.00 3.51
658 723 2.094675 CATGTCCAATCCAACCTGTCC 58.905 52.381 0.00 0.00 0.00 4.02
659 724 2.094675 CCATGTCCAATCCAACCTGTC 58.905 52.381 0.00 0.00 0.00 3.51
660 725 1.710244 TCCATGTCCAATCCAACCTGT 59.290 47.619 0.00 0.00 0.00 4.00
661 726 2.094675 GTCCATGTCCAATCCAACCTG 58.905 52.381 0.00 0.00 0.00 4.00
664 729 1.474077 GCTGTCCATGTCCAATCCAAC 59.526 52.381 0.00 0.00 0.00 3.77
688 753 3.010584 AGGCTGTCCATGTCCAATAACTT 59.989 43.478 0.00 0.00 33.74 2.66
690 755 2.945668 GAGGCTGTCCATGTCCAATAAC 59.054 50.000 0.00 0.00 33.74 1.89
693 758 0.994247 TGAGGCTGTCCATGTCCAAT 59.006 50.000 0.00 0.00 33.74 3.16
694 759 0.770499 TTGAGGCTGTCCATGTCCAA 59.230 50.000 0.00 0.00 33.74 3.53
695 760 0.994247 ATTGAGGCTGTCCATGTCCA 59.006 50.000 0.00 0.00 33.74 4.02
696 761 2.945668 GTTATTGAGGCTGTCCATGTCC 59.054 50.000 0.00 0.00 33.74 4.02
697 762 3.609853 TGTTATTGAGGCTGTCCATGTC 58.390 45.455 0.00 0.00 33.74 3.06
698 763 3.264193 TCTGTTATTGAGGCTGTCCATGT 59.736 43.478 0.00 0.00 33.74 3.21
700 765 3.521126 ACTCTGTTATTGAGGCTGTCCAT 59.479 43.478 0.00 0.00 35.98 3.41
702 767 3.055819 TCACTCTGTTATTGAGGCTGTCC 60.056 47.826 0.00 0.00 35.98 4.02
703 768 4.193826 TCACTCTGTTATTGAGGCTGTC 57.806 45.455 0.00 0.00 35.98 3.51
704 769 4.623932 TTCACTCTGTTATTGAGGCTGT 57.376 40.909 0.00 0.00 35.98 4.40
705 770 6.373774 AGAATTTCACTCTGTTATTGAGGCTG 59.626 38.462 0.00 0.00 35.98 4.85
706 771 6.479884 AGAATTTCACTCTGTTATTGAGGCT 58.520 36.000 0.00 0.00 35.98 4.58
707 772 6.749923 AGAATTTCACTCTGTTATTGAGGC 57.250 37.500 0.00 0.00 35.98 4.70
708 773 7.025963 GCAAGAATTTCACTCTGTTATTGAGG 58.974 38.462 0.00 0.00 35.98 3.86
709 774 7.814642 AGCAAGAATTTCACTCTGTTATTGAG 58.185 34.615 0.00 0.00 37.55 3.02
710 775 7.750229 AGCAAGAATTTCACTCTGTTATTGA 57.250 32.000 0.00 0.00 0.00 2.57
711 776 7.965107 GGTAGCAAGAATTTCACTCTGTTATTG 59.035 37.037 0.00 0.00 0.00 1.90
712 777 7.665559 TGGTAGCAAGAATTTCACTCTGTTATT 59.334 33.333 0.00 0.00 0.00 1.40
713 778 7.168219 TGGTAGCAAGAATTTCACTCTGTTAT 58.832 34.615 0.00 0.00 0.00 1.89
714 779 6.530120 TGGTAGCAAGAATTTCACTCTGTTA 58.470 36.000 0.00 0.00 0.00 2.41
715 780 5.376625 TGGTAGCAAGAATTTCACTCTGTT 58.623 37.500 0.00 0.00 0.00 3.16
716 781 4.973168 TGGTAGCAAGAATTTCACTCTGT 58.027 39.130 0.00 0.00 0.00 3.41
717 782 5.947228 TTGGTAGCAAGAATTTCACTCTG 57.053 39.130 2.54 0.00 0.00 3.35
718 783 5.241728 GGTTTGGTAGCAAGAATTTCACTCT 59.758 40.000 7.51 0.00 0.00 3.24
719 784 5.461526 GGTTTGGTAGCAAGAATTTCACTC 58.538 41.667 7.51 0.00 0.00 3.51
720 785 4.280929 GGGTTTGGTAGCAAGAATTTCACT 59.719 41.667 7.51 0.00 0.00 3.41
721 786 4.038642 TGGGTTTGGTAGCAAGAATTTCAC 59.961 41.667 7.51 1.41 0.00 3.18
722 787 4.219115 TGGGTTTGGTAGCAAGAATTTCA 58.781 39.130 7.51 0.33 0.00 2.69
723 788 4.864704 TGGGTTTGGTAGCAAGAATTTC 57.135 40.909 7.51 0.00 0.00 2.17
724 789 5.364778 GTTTGGGTTTGGTAGCAAGAATTT 58.635 37.500 7.51 0.00 0.00 1.82
725 790 4.202315 GGTTTGGGTTTGGTAGCAAGAATT 60.202 41.667 7.51 0.00 0.00 2.17
726 791 3.323691 GGTTTGGGTTTGGTAGCAAGAAT 59.676 43.478 7.51 0.00 0.00 2.40
734 799 2.432510 CTGCTTTGGTTTGGGTTTGGTA 59.567 45.455 0.00 0.00 0.00 3.25
772 840 1.618030 GGGAGGAGAGAGCAGAGGA 59.382 63.158 0.00 0.00 0.00 3.71
774 842 0.468029 GAGGGGAGGAGAGAGCAGAG 60.468 65.000 0.00 0.00 0.00 3.35
775 843 1.618030 GAGGGGAGGAGAGAGCAGA 59.382 63.158 0.00 0.00 0.00 4.26
777 845 2.693017 GGAGGGGAGGAGAGAGCA 59.307 66.667 0.00 0.00 0.00 4.26
778 846 2.123033 GGGAGGGGAGGAGAGAGC 60.123 72.222 0.00 0.00 0.00 4.09
779 847 2.328589 TGGGGAGGGGAGGAGAGAG 61.329 68.421 0.00 0.00 0.00 3.20
780 848 2.204624 TGGGGAGGGGAGGAGAGA 60.205 66.667 0.00 0.00 0.00 3.10
781 849 2.041405 GTGGGGAGGGGAGGAGAG 60.041 72.222 0.00 0.00 0.00 3.20
782 850 1.837533 AATGTGGGGAGGGGAGGAGA 61.838 60.000 0.00 0.00 0.00 3.71
833 937 3.055530 AGGAACAGTTACAGAGGATGCAG 60.056 47.826 0.00 0.00 0.00 4.41
834 938 2.906389 AGGAACAGTTACAGAGGATGCA 59.094 45.455 0.00 0.00 0.00 3.96
835 939 3.618690 AGGAACAGTTACAGAGGATGC 57.381 47.619 0.00 0.00 0.00 3.91
865 1009 2.110721 AGAAAATCCTTCCTTGTGCCCT 59.889 45.455 0.00 0.00 0.00 5.19
867 1011 2.493675 GGAGAAAATCCTTCCTTGTGCC 59.506 50.000 0.00 0.00 45.64 5.01
884 1028 3.587498 TCAAGAAGGAAACTCTGGGAGA 58.413 45.455 1.31 0.00 42.68 3.71
886 1030 5.324832 AATTCAAGAAGGAAACTCTGGGA 57.675 39.130 0.00 0.00 42.68 4.37
889 1033 8.193438 AGAACAAAATTCAAGAAGGAAACTCTG 58.807 33.333 0.00 0.00 42.68 3.35
891 1035 8.811378 CAAGAACAAAATTCAAGAAGGAAACTC 58.189 33.333 0.00 0.00 42.68 3.01
893 1037 7.278646 AGCAAGAACAAAATTCAAGAAGGAAAC 59.721 33.333 0.00 0.00 0.00 2.78
895 1039 6.877236 AGCAAGAACAAAATTCAAGAAGGAA 58.123 32.000 0.00 0.00 0.00 3.36
896 1040 6.469782 AGCAAGAACAAAATTCAAGAAGGA 57.530 33.333 0.00 0.00 0.00 3.36
897 1041 6.536224 ACAAGCAAGAACAAAATTCAAGAAGG 59.464 34.615 0.00 0.00 0.00 3.46
898 1042 7.254218 GGACAAGCAAGAACAAAATTCAAGAAG 60.254 37.037 0.00 0.00 0.00 2.85
944 1088 0.963856 CAGGAGCAGGAGCAAATGCA 60.964 55.000 8.28 0.00 45.01 3.96
950 1094 3.397439 GGAGCAGGAGCAGGAGCA 61.397 66.667 0.00 0.00 45.49 4.26
951 1095 4.173924 GGGAGCAGGAGCAGGAGC 62.174 72.222 0.00 0.00 45.49 4.70
952 1096 3.847602 CGGGAGCAGGAGCAGGAG 61.848 72.222 0.00 0.00 45.49 3.69
955 1099 2.657102 GAATCCGGGAGCAGGAGCAG 62.657 65.000 0.00 0.00 45.49 4.24
997 1145 0.040204 ATGGCCAAGAAGAAGTGGGG 59.960 55.000 10.96 0.00 35.28 4.96
1023 1171 1.009829 CGGCAGCCAAAGATGTAGAC 58.990 55.000 13.30 0.00 0.00 2.59
1024 1172 0.744414 GCGGCAGCCAAAGATGTAGA 60.744 55.000 13.30 0.00 37.42 2.59
1025 1173 1.026182 TGCGGCAGCCAAAGATGTAG 61.026 55.000 13.30 0.00 44.33 2.74
1272 1469 2.766263 CTGGATCTACCACCTGTAGCAA 59.234 50.000 0.00 0.00 45.56 3.91
1374 1601 4.326817 CACACACACACAAGAAATTGTTGG 59.673 41.667 7.76 0.00 31.86 3.77
1393 1641 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1394 1642 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1398 1646 2.394563 CGCCACACACACACACACA 61.395 57.895 0.00 0.00 0.00 3.72
1432 2297 4.323257 GGGGGAGAAACAGAGAATTCGTTA 60.323 45.833 0.00 0.00 0.00 3.18
1435 2300 2.633488 GGGGGAGAAACAGAGAATTCG 58.367 52.381 0.00 0.00 0.00 3.34
1457 2327 6.605594 ACCAAATCACACCTAGAAACAAGAAA 59.394 34.615 0.00 0.00 0.00 2.52
1463 2333 5.507315 CCACAACCAAATCACACCTAGAAAC 60.507 44.000 0.00 0.00 0.00 2.78
1649 2538 4.374399 ACAAATAAACACGAGACGAACCT 58.626 39.130 0.00 0.00 0.00 3.50
1650 2539 4.209703 TGACAAATAAACACGAGACGAACC 59.790 41.667 0.00 0.00 0.00 3.62
1651 2540 5.319232 TGACAAATAAACACGAGACGAAC 57.681 39.130 0.00 0.00 0.00 3.95
1652 2541 4.084745 GCTGACAAATAAACACGAGACGAA 60.085 41.667 0.00 0.00 0.00 3.85
1653 2542 3.427528 GCTGACAAATAAACACGAGACGA 59.572 43.478 0.00 0.00 0.00 4.20
1654 2543 3.183574 TGCTGACAAATAAACACGAGACG 59.816 43.478 0.00 0.00 0.00 4.18
1655 2544 4.211374 ACTGCTGACAAATAAACACGAGAC 59.789 41.667 0.00 0.00 0.00 3.36
1656 2545 4.211164 CACTGCTGACAAATAAACACGAGA 59.789 41.667 0.00 0.00 0.00 4.04
1657 2546 4.024893 ACACTGCTGACAAATAAACACGAG 60.025 41.667 0.00 0.00 0.00 4.18
1658 2547 3.874543 ACACTGCTGACAAATAAACACGA 59.125 39.130 0.00 0.00 0.00 4.35
1659 2548 4.209452 ACACTGCTGACAAATAAACACG 57.791 40.909 0.00 0.00 0.00 4.49
1660 2549 4.211389 CGACACTGCTGACAAATAAACAC 58.789 43.478 0.00 0.00 0.00 3.32
1661 2550 3.249799 CCGACACTGCTGACAAATAAACA 59.750 43.478 0.00 0.00 0.00 2.83
1662 2551 3.810373 CCGACACTGCTGACAAATAAAC 58.190 45.455 0.00 0.00 0.00 2.01
1663 2552 2.225491 GCCGACACTGCTGACAAATAAA 59.775 45.455 0.00 0.00 0.00 1.40
1664 2553 1.804151 GCCGACACTGCTGACAAATAA 59.196 47.619 0.00 0.00 0.00 1.40
1665 2554 1.438651 GCCGACACTGCTGACAAATA 58.561 50.000 0.00 0.00 0.00 1.40
1666 2555 1.568612 CGCCGACACTGCTGACAAAT 61.569 55.000 0.00 0.00 0.00 2.32
1667 2556 2.243957 CGCCGACACTGCTGACAAA 61.244 57.895 0.00 0.00 0.00 2.83
1668 2557 2.661537 CGCCGACACTGCTGACAA 60.662 61.111 0.00 0.00 0.00 3.18
1669 2558 4.662961 CCGCCGACACTGCTGACA 62.663 66.667 0.00 0.00 0.00 3.58
1670 2559 4.664677 ACCGCCGACACTGCTGAC 62.665 66.667 0.00 0.00 0.00 3.51
1671 2560 4.662961 CACCGCCGACACTGCTGA 62.663 66.667 0.00 0.00 0.00 4.26
1682 2571 2.275380 AAAATGAGCCACCACCGCC 61.275 57.895 0.00 0.00 0.00 6.13
1683 2572 1.080569 CAAAATGAGCCACCACCGC 60.081 57.895 0.00 0.00 0.00 5.68
1684 2573 1.080569 GCAAAATGAGCCACCACCG 60.081 57.895 0.00 0.00 0.00 4.94
1685 2574 1.080569 CGCAAAATGAGCCACCACC 60.081 57.895 0.00 0.00 0.00 4.61
1686 2575 0.664166 CACGCAAAATGAGCCACCAC 60.664 55.000 0.00 0.00 0.00 4.16
1687 2576 1.659233 CACGCAAAATGAGCCACCA 59.341 52.632 0.00 0.00 0.00 4.17
1688 2577 1.080569 CCACGCAAAATGAGCCACC 60.081 57.895 0.00 0.00 0.00 4.61
1689 2578 0.664166 CACCACGCAAAATGAGCCAC 60.664 55.000 0.00 0.00 0.00 5.01
1690 2579 1.106351 ACACCACGCAAAATGAGCCA 61.106 50.000 0.00 0.00 0.00 4.75
1691 2580 0.031994 AACACCACGCAAAATGAGCC 59.968 50.000 0.00 0.00 0.00 4.70
1692 2581 1.130955 CAACACCACGCAAAATGAGC 58.869 50.000 0.00 0.00 0.00 4.26
1693 2582 1.769733 CCAACACCACGCAAAATGAG 58.230 50.000 0.00 0.00 0.00 2.90
1694 2583 0.249238 GCCAACACCACGCAAAATGA 60.249 50.000 0.00 0.00 0.00 2.57
1695 2584 0.529337 TGCCAACACCACGCAAAATG 60.529 50.000 0.00 0.00 0.00 2.32
1696 2585 0.392336 ATGCCAACACCACGCAAAAT 59.608 45.000 0.00 0.00 35.85 1.82
1697 2586 0.176680 AATGCCAACACCACGCAAAA 59.823 45.000 0.00 0.00 35.85 2.44
1698 2587 1.000827 CTAATGCCAACACCACGCAAA 60.001 47.619 0.00 0.00 35.85 3.68
1699 2588 0.595588 CTAATGCCAACACCACGCAA 59.404 50.000 0.00 0.00 35.85 4.85
1700 2589 1.240641 CCTAATGCCAACACCACGCA 61.241 55.000 0.00 0.00 36.84 5.24
1701 2590 1.241315 ACCTAATGCCAACACCACGC 61.241 55.000 0.00 0.00 0.00 5.34
1702 2591 1.199097 GAACCTAATGCCAACACCACG 59.801 52.381 0.00 0.00 0.00 4.94
1703 2592 1.199097 CGAACCTAATGCCAACACCAC 59.801 52.381 0.00 0.00 0.00 4.16
1704 2593 1.202830 ACGAACCTAATGCCAACACCA 60.203 47.619 0.00 0.00 0.00 4.17
1705 2594 1.467342 GACGAACCTAATGCCAACACC 59.533 52.381 0.00 0.00 0.00 4.16
1706 2595 1.467342 GGACGAACCTAATGCCAACAC 59.533 52.381 0.00 0.00 35.41 3.32
1707 2596 1.816074 GGACGAACCTAATGCCAACA 58.184 50.000 0.00 0.00 35.41 3.33
1708 2597 0.725117 CGGACGAACCTAATGCCAAC 59.275 55.000 0.00 0.00 36.31 3.77
1709 2598 0.391927 CCGGACGAACCTAATGCCAA 60.392 55.000 0.00 0.00 36.31 4.52
1710 2599 1.219664 CCGGACGAACCTAATGCCA 59.780 57.895 0.00 0.00 36.31 4.92
1711 2600 0.392060 AACCGGACGAACCTAATGCC 60.392 55.000 9.46 0.00 36.31 4.40
1712 2601 1.004595 GAACCGGACGAACCTAATGC 58.995 55.000 9.46 0.00 36.31 3.56
1713 2602 1.274596 CGAACCGGACGAACCTAATG 58.725 55.000 9.46 0.00 36.31 1.90
1714 2603 0.890683 ACGAACCGGACGAACCTAAT 59.109 50.000 25.79 5.27 36.31 1.73
1715 2604 0.039256 CACGAACCGGACGAACCTAA 60.039 55.000 25.79 0.00 36.31 2.69
1716 2605 0.888736 TCACGAACCGGACGAACCTA 60.889 55.000 25.79 8.62 36.31 3.08
1797 2802 1.375908 GTTCTGGACAGCGATGGCA 60.376 57.895 9.61 0.00 43.41 4.92
1864 2877 9.825972 CTCAACAAATAAACAGGTACACAATAG 57.174 33.333 0.00 0.00 0.00 1.73
1867 2880 7.771361 TCTCTCAACAAATAAACAGGTACACAA 59.229 33.333 0.00 0.00 0.00 3.33
1888 2907 7.761704 TGTCACTGTTCTGCTATTATTTCTCTC 59.238 37.037 0.00 0.00 0.00 3.20
1976 3011 8.764524 AATGAAATCGGTAGCATCTCTTATAC 57.235 34.615 0.00 0.00 0.00 1.47
1977 3012 8.035394 GGAATGAAATCGGTAGCATCTCTTATA 58.965 37.037 0.00 0.00 0.00 0.98
1978 3013 6.876257 GGAATGAAATCGGTAGCATCTCTTAT 59.124 38.462 0.00 0.00 0.00 1.73
1979 3014 6.042093 AGGAATGAAATCGGTAGCATCTCTTA 59.958 38.462 0.00 0.00 0.00 2.10
1980 3015 5.059833 GGAATGAAATCGGTAGCATCTCTT 58.940 41.667 0.00 0.00 0.00 2.85
1981 3016 4.346418 AGGAATGAAATCGGTAGCATCTCT 59.654 41.667 0.00 0.00 0.00 3.10
1982 3017 4.636249 AGGAATGAAATCGGTAGCATCTC 58.364 43.478 0.00 0.00 0.00 2.75
1983 3018 4.696479 AGGAATGAAATCGGTAGCATCT 57.304 40.909 0.00 0.00 0.00 2.90
2009 3072 4.698201 TTCTTGGTAGACATTGTGACCA 57.302 40.909 13.68 13.68 40.21 4.02
2019 3082 6.549952 CATTGCTGAAGATTTCTTGGTAGAC 58.450 40.000 0.00 0.00 36.11 2.59
2037 3100 2.874701 CCAGCTACGAATAAGCATTGCT 59.125 45.455 5.03 5.03 42.62 3.91
2101 3242 4.144418 TGGTACACCGCACCAAAC 57.856 55.556 0.00 0.00 43.08 2.93
2166 3329 3.070446 CAGGCCATGCATCAACCATAAAT 59.930 43.478 5.01 0.00 0.00 1.40
2173 3375 1.180029 AAGACAGGCCATGCATCAAC 58.820 50.000 5.01 0.00 0.00 3.18
2188 3390 9.628500 AGGGAATGTATAAACAGGAATAAAGAC 57.372 33.333 0.00 0.00 39.49 3.01
2198 3401 7.607991 ACAGAACAGAAGGGAATGTATAAACAG 59.392 37.037 0.00 0.00 39.49 3.16
2212 3418 7.803279 AAGTTAGGTAAAACAGAACAGAAGG 57.197 36.000 0.00 0.00 0.00 3.46
2416 3632 1.635487 TCTTGCTGCCTGTAAAGGGAT 59.365 47.619 0.00 0.00 0.00 3.85
2450 3666 2.101582 GACGAGTGCCTTATCACCATCT 59.898 50.000 0.00 0.00 37.68 2.90
2619 3848 7.571026 CAGATAAATACTTTGAATGCTCCTCG 58.429 38.462 0.00 0.00 0.00 4.63
2761 3993 7.078228 CCGTTGATTAGATAAAAAGCATAGGC 58.922 38.462 0.00 0.00 41.61 3.93
2769 4001 8.500773 GTGTGAGAACCGTTGATTAGATAAAAA 58.499 33.333 0.00 0.00 0.00 1.94
2781 4013 3.393800 AGAATGAGTGTGAGAACCGTTG 58.606 45.455 0.00 0.00 0.00 4.10
2874 4116 5.036737 CCTTACCGCAATGCAGATAAAAAG 58.963 41.667 5.91 0.00 0.00 2.27
2888 4143 0.687920 TCCATTCACACCTTACCGCA 59.312 50.000 0.00 0.00 0.00 5.69
2889 4144 2.038387 ATCCATTCACACCTTACCGC 57.962 50.000 0.00 0.00 0.00 5.68
2890 4145 6.693315 AATAAATCCATTCACACCTTACCG 57.307 37.500 0.00 0.00 0.00 4.02
2915 4171 7.042523 GCTGAACTCTGCAAAACATTGTAAAAT 60.043 33.333 3.93 0.00 40.06 1.82
3121 4421 4.444022 GCCTCAGGTTCACATCATCTACAT 60.444 45.833 0.00 0.00 0.00 2.29
3163 4463 7.741027 AATTATGCAGTTCTCATATGGAGTG 57.259 36.000 2.13 4.34 44.40 3.51
3310 4771 7.448469 ACGCCTTCCTATTAATTGATAGCAAAT 59.552 33.333 10.94 0.00 37.59 2.32
3335 4796 4.207635 CACAAATCAATGAACTGTGTGCAC 59.792 41.667 10.75 10.75 34.13 4.57
3407 4871 4.391830 GGAAATTCAGAACGTGCAGACATA 59.608 41.667 0.00 0.00 0.00 2.29
3419 4883 4.463891 GCATTGAAGGGAGGAAATTCAGAA 59.536 41.667 0.00 0.00 34.64 3.02
3556 5077 5.673514 ACAAACAAAGTGAGCATTTGGAAT 58.326 33.333 3.74 0.00 41.05 3.01
3584 5107 7.108841 TCCGCTTATCAACTACAAAGATACT 57.891 36.000 0.00 0.00 0.00 2.12
3629 5152 9.073475 AGCATTTGGAAAGTACAAGTACAAATA 57.927 29.630 12.43 0.00 38.48 1.40
3630 5153 7.951591 AGCATTTGGAAAGTACAAGTACAAAT 58.048 30.769 12.43 7.48 38.48 2.32
3637 5160 5.437289 TGTGAGCATTTGGAAAGTACAAG 57.563 39.130 0.00 0.00 0.00 3.16
3783 5310 7.543756 CCTGGACAATAATAACGGAAAATTGT 58.456 34.615 0.00 0.00 41.98 2.71
3791 5320 3.882888 ACATGCCTGGACAATAATAACGG 59.117 43.478 0.00 0.00 0.00 4.44
3804 5361 3.368323 GGGTACAAATTCAACATGCCTGG 60.368 47.826 0.00 0.00 0.00 4.45
3898 5458 5.163774 GCAACAGAGAAATGATTCCTCAGAC 60.164 44.000 0.00 0.00 36.12 3.51
6478 9814 9.236006 CTATGGGAATTTGAAGAGAGAAAAGAA 57.764 33.333 0.00 0.00 0.00 2.52
6480 9816 8.457261 CACTATGGGAATTTGAAGAGAGAAAAG 58.543 37.037 0.00 0.00 0.00 2.27
6485 9821 6.881065 TCAACACTATGGGAATTTGAAGAGAG 59.119 38.462 0.00 0.00 0.00 3.20
6542 9879 4.394920 GCGGTTGGATTCTCTTGTTGAATA 59.605 41.667 0.00 0.00 34.67 1.75
6568 9905 1.217916 TGGAAGAACCAGTTCACCCA 58.782 50.000 12.76 14.33 44.64 4.51
6597 9934 9.765795 AGATTAGAAGTTTTCTCGAAAAGAAGA 57.234 29.630 5.15 0.00 44.69 2.87
6633 9970 5.090757 GTGTTCGTCGTACTGTCATGATTA 58.909 41.667 0.00 0.00 0.00 1.75
6648 9985 8.677871 AATTTTTATTATTTCCGGTGTTCGTC 57.322 30.769 0.00 0.00 37.11 4.20
6664 10001 9.813826 CCTATGGATCTGGAGGTAATTTTTATT 57.186 33.333 0.00 0.00 0.00 1.40
6676 10016 0.689623 GGTGGCCTATGGATCTGGAG 59.310 60.000 3.32 0.00 0.00 3.86
6690 10030 1.063811 GTAGTCGTCGCTAGGTGGC 59.936 63.158 0.00 0.00 0.00 5.01
6711 10051 3.883744 CTTCGGCCCGCTTCAGTGT 62.884 63.158 0.00 0.00 0.00 3.55
6735 10075 3.224324 GAGGGGCTATGACGGCGA 61.224 66.667 16.62 0.00 0.00 5.54
6745 10085 1.684049 CTCCGACAAGAGAGGGGCT 60.684 63.158 0.00 0.00 35.82 5.19
6753 10093 2.599281 TGCCCGACTCCGACAAGA 60.599 61.111 0.00 0.00 38.22 3.02
6756 10109 3.228017 TTGTGCCCGACTCCGACA 61.228 61.111 0.00 0.00 38.22 4.35
6782 10135 4.336889 GGTGACTTTCCGATCATATCCA 57.663 45.455 0.00 0.00 0.00 3.41
6795 10148 0.396811 AGCCTTAGCACGGTGACTTT 59.603 50.000 13.29 0.00 43.56 2.66
6802 10155 0.034059 CCTATGGAGCCTTAGCACGG 59.966 60.000 4.38 0.00 43.56 4.94
6814 10167 0.546507 TGGTGTGCTGGTCCTATGGA 60.547 55.000 0.00 0.00 0.00 3.41
6847 10200 5.731599 ATCTACGTTATTCTTCGTCGACT 57.268 39.130 14.70 0.00 40.70 4.18
6886 10239 6.399743 TGTTCGTCTATGTTAATGTGCCTTA 58.600 36.000 0.00 0.00 0.00 2.69
6896 10249 7.493320 GGATATGGTTGTTGTTCGTCTATGTTA 59.507 37.037 0.00 0.00 0.00 2.41
7095 10458 5.470098 AGGCATACTAGTGACACTTTGTTTG 59.530 40.000 14.50 17.08 0.00 2.93
7096 10459 5.621193 AGGCATACTAGTGACACTTTGTTT 58.379 37.500 14.50 6.06 0.00 2.83
7101 10464 7.124298 TCAAATAGAGGCATACTAGTGACACTT 59.876 37.037 14.50 0.00 30.42 3.16
7123 10486 7.064609 CCATCTTTGATTAACGAGCTAGTCAAA 59.935 37.037 0.00 5.76 36.02 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.