Multiple sequence alignment - TraesCS7B01G002800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G002800 chr7B 100.000 3128 0 0 1 3128 1153190 1156317 0.000000e+00 5777.0
1 TraesCS7B01G002800 chr7B 91.109 2497 177 20 638 3126 1020209 1022668 0.000000e+00 3339.0
2 TraesCS7B01G002800 chr7B 87.627 1277 132 13 874 2129 128388 129659 0.000000e+00 1459.0
3 TraesCS7B01G002800 chr7B 85.919 1257 130 19 874 2109 222278 223508 0.000000e+00 1297.0
4 TraesCS7B01G002800 chr7B 82.821 390 62 4 4 388 502686891 502687280 8.310000e-91 344.0
5 TraesCS7B01G002800 chr7B 100.000 29 0 0 650 678 12535144 12535116 2.000000e-03 54.7
6 TraesCS7B01G002800 chr5D 90.512 2519 169 31 638 3126 561804503 561802025 0.000000e+00 3264.0
7 TraesCS7B01G002800 chr5D 87.981 1273 132 13 874 2129 562488400 562487132 0.000000e+00 1483.0
8 TraesCS7B01G002800 chr5D 87.903 1273 133 13 874 2129 562531245 562529977 0.000000e+00 1478.0
9 TraesCS7B01G002800 chr5D 85.467 1273 142 20 874 2129 562431914 562430668 0.000000e+00 1286.0
10 TraesCS7B01G002800 chr5D 85.479 303 35 7 6 303 344873210 344872912 1.090000e-79 307.0
11 TraesCS7B01G002800 chr5D 82.530 166 18 7 2192 2355 562413625 562413469 5.440000e-28 135.0
12 TraesCS7B01G002800 chr5B 97.011 1773 43 5 635 2402 711715885 711714118 0.000000e+00 2972.0
13 TraesCS7B01G002800 chr5B 82.237 1520 182 44 874 2358 712890355 712888889 0.000000e+00 1230.0
14 TraesCS7B01G002800 chr5B 91.641 658 32 3 1 635 711716771 711716114 0.000000e+00 889.0
15 TraesCS7B01G002800 chr5B 80.952 315 50 5 82 387 651210288 651210601 1.120000e-59 241.0
16 TraesCS7B01G002800 chr5B 74.172 302 69 5 2721 3020 497903310 497903016 1.970000e-22 117.0
17 TraesCS7B01G002800 chr3B 89.406 387 38 2 1 385 441608029 441608414 4.690000e-133 484.0
18 TraesCS7B01G002800 chr3A 87.179 390 44 4 1 387 14842244 14842630 3.700000e-119 438.0
19 TraesCS7B01G002800 chr3A 83.333 138 22 1 400 536 14842685 14842822 3.270000e-25 126.0
20 TraesCS7B01G002800 chr4D 85.530 387 51 4 6 387 495821941 495822327 1.750000e-107 399.0
21 TraesCS7B01G002800 chr2D 80.685 409 51 18 6 387 447249379 447249786 3.050000e-75 292.0
22 TraesCS7B01G002800 chr2D 78.740 381 44 16 16 384 89225255 89225610 1.460000e-53 220.0
23 TraesCS7B01G002800 chr2B 80.940 383 59 8 6 383 763408564 763408191 1.100000e-74 291.0
24 TraesCS7B01G002800 chr2B 81.505 319 54 5 20 334 526884899 526885216 1.110000e-64 257.0
25 TraesCS7B01G002800 chr3D 80.585 376 61 10 15 384 99822573 99822204 2.380000e-71 279.0
26 TraesCS7B01G002800 chr4B 84.360 211 25 7 182 385 73681351 73681560 1.900000e-47 200.0
27 TraesCS7B01G002800 chr1B 82.036 167 23 6 374 536 441627743 441627906 5.440000e-28 135.0
28 TraesCS7B01G002800 chrUn 73.397 312 71 10 2718 3020 294098739 294099047 4.270000e-19 106.0
29 TraesCS7B01G002800 chr1D 73.397 312 71 10 2718 3020 437836151 437836459 4.270000e-19 106.0
30 TraesCS7B01G002800 chr5A 90.164 61 6 0 2965 3025 331950919 331950859 2.590000e-11 80.5
31 TraesCS7B01G002800 chr7A 74.242 198 45 5 2828 3021 436768214 436768019 9.300000e-11 78.7
32 TraesCS7B01G002800 chr4A 70.769 390 96 14 2737 3112 101969987 101970372 4.330000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G002800 chr7B 1153190 1156317 3127 False 5777.0 5777 100.000 1 3128 1 chr7B.!!$F4 3127
1 TraesCS7B01G002800 chr7B 1020209 1022668 2459 False 3339.0 3339 91.109 638 3126 1 chr7B.!!$F3 2488
2 TraesCS7B01G002800 chr7B 128388 129659 1271 False 1459.0 1459 87.627 874 2129 1 chr7B.!!$F1 1255
3 TraesCS7B01G002800 chr7B 222278 223508 1230 False 1297.0 1297 85.919 874 2109 1 chr7B.!!$F2 1235
4 TraesCS7B01G002800 chr5D 561802025 561804503 2478 True 3264.0 3264 90.512 638 3126 1 chr5D.!!$R2 2488
5 TraesCS7B01G002800 chr5D 562487132 562488400 1268 True 1483.0 1483 87.981 874 2129 1 chr5D.!!$R5 1255
6 TraesCS7B01G002800 chr5D 562529977 562531245 1268 True 1478.0 1478 87.903 874 2129 1 chr5D.!!$R6 1255
7 TraesCS7B01G002800 chr5D 562430668 562431914 1246 True 1286.0 1286 85.467 874 2129 1 chr5D.!!$R4 1255
8 TraesCS7B01G002800 chr5B 711714118 711716771 2653 True 1930.5 2972 94.326 1 2402 2 chr5B.!!$R3 2401
9 TraesCS7B01G002800 chr5B 712888889 712890355 1466 True 1230.0 1230 82.237 874 2358 1 chr5B.!!$R2 1484
10 TraesCS7B01G002800 chr3A 14842244 14842822 578 False 282.0 438 85.256 1 536 2 chr3A.!!$F1 535

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
540 586 0.031449 GCTGCCAAACACGCCTTTAA 59.969 50.000 0.00 0.0 0.0 1.52 F
635 681 1.298859 GGATCCACAGGTCACAACGC 61.299 60.000 6.95 0.0 0.0 4.84 F
1272 1591 2.308722 GGCCATCCCAGGAACCTCA 61.309 63.158 0.00 0.0 0.0 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1728 2047 0.601558 GTCGTCCCAGTGTGCTTCTA 59.398 55.0 0.0 0.0 0.00 2.10 R
1740 2059 0.796113 GCTCGTTAAGTCGTCGTCCC 60.796 60.0 0.0 0.0 0.00 4.46 R
2826 3170 0.100682 CCGTTCTCATCGTGTCGGAT 59.899 55.0 0.0 0.0 40.29 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 1.448717 GGAGACTTTCTCTGCGGCC 60.449 63.158 0.00 0.00 42.95 6.13
153 154 2.045045 CCATGGTCCCACACGCAT 60.045 61.111 2.57 0.00 0.00 4.73
166 167 1.470098 ACACGCATTGCATTTCTCCTC 59.530 47.619 9.69 0.00 0.00 3.71
252 255 3.723348 GTGGCGCCGACAAGAACC 61.723 66.667 23.90 0.00 0.00 3.62
317 320 0.179032 TCACCGTCCAATGCAGTTGT 60.179 50.000 0.00 0.00 36.01 3.32
385 430 1.201834 CGCGTATACAACCAAACACCG 60.202 52.381 0.00 0.00 0.00 4.94
389 434 3.059306 CGTATACAACCAAACACCGTACG 59.941 47.826 8.69 8.69 0.00 3.67
405 450 1.272769 GTACGCTAAGCCATCCCCTAG 59.727 57.143 0.00 0.00 0.00 3.02
406 451 1.004440 CGCTAAGCCATCCCCTAGC 60.004 63.158 0.00 0.00 0.00 3.42
422 467 3.252701 CCCTAGCGCGAAAGAACTAGATA 59.747 47.826 12.10 0.00 39.24 1.98
446 491 4.519540 GGTAACCAAACAATGTGCAGAT 57.480 40.909 0.00 0.00 0.00 2.90
540 586 0.031449 GCTGCCAAACACGCCTTTAA 59.969 50.000 0.00 0.00 0.00 1.52
635 681 1.298859 GGATCCACAGGTCACAACGC 61.299 60.000 6.95 0.00 0.00 4.84
636 682 1.298859 GATCCACAGGTCACAACGCC 61.299 60.000 0.00 0.00 0.00 5.68
680 957 3.541523 CGATCTATTCATCATCTGTCGCG 59.458 47.826 0.00 0.00 0.00 5.87
838 1115 6.957077 CACGACAAGTAAAATATAAACCACCG 59.043 38.462 0.00 0.00 0.00 4.94
1011 1321 3.643320 ACTCGAGCAGAATGAATCCCATA 59.357 43.478 13.61 0.00 39.69 2.74
1136 1455 2.367202 GGAGCCTCAATGGTCGGGA 61.367 63.158 0.00 0.00 38.35 5.14
1272 1591 2.308722 GGCCATCCCAGGAACCTCA 61.309 63.158 0.00 0.00 0.00 3.86
1728 2047 6.041182 ACATGCCATTGTATGTGAAGCATAAT 59.959 34.615 0.00 0.00 44.75 1.28
1740 2059 5.352293 TGTGAAGCATAATAGAAGCACACTG 59.648 40.000 0.47 0.00 38.05 3.66
2341 2670 8.061857 TCGCATTGTTGTAATAATCGAATCTTC 58.938 33.333 0.00 0.00 0.00 2.87
2370 2699 7.226720 GGTCCATGTATTGTGTATCGAGAAATT 59.773 37.037 0.00 0.00 0.00 1.82
2402 2743 4.568072 TGACTGGTATGCCAAGTTGTAT 57.432 40.909 3.43 0.00 45.51 2.29
2413 2754 3.936453 GCCAAGTTGTATTGTGTATCGGA 59.064 43.478 1.45 0.00 0.00 4.55
2438 2779 0.247460 CGTGATCTCCAAGCTGGTGA 59.753 55.000 8.68 8.68 43.26 4.02
2454 2795 4.260985 CTGGTGATGTGTGGCAACTTATA 58.739 43.478 0.00 0.00 37.61 0.98
2499 2843 9.444600 GGTGTTGTCTCTCCTTGTTTTATATTA 57.555 33.333 0.00 0.00 0.00 0.98
2525 2869 7.289310 TGCTTTAATCCATCCATACATCAAGA 58.711 34.615 0.00 0.00 0.00 3.02
2527 2871 7.094463 GCTTTAATCCATCCATACATCAAGAGG 60.094 40.741 0.00 0.00 0.00 3.69
2528 2872 4.923516 ATCCATCCATACATCAAGAGGG 57.076 45.455 0.00 0.00 0.00 4.30
2535 2879 3.054434 CCATACATCAAGAGGGTGTTCCA 60.054 47.826 0.00 0.00 38.24 3.53
2546 2890 1.560505 GGTGTTCCATTGCCTCCATT 58.439 50.000 0.00 0.00 0.00 3.16
2578 2922 5.769662 ACTTTGCATACTTGTCTCAATTGGA 59.230 36.000 5.42 0.00 0.00 3.53
2586 2930 4.593206 ACTTGTCTCAATTGGACCTGACTA 59.407 41.667 18.52 10.30 33.22 2.59
2644 2988 2.710096 TGGTAGGCTGCAAATAGGTC 57.290 50.000 4.64 0.00 0.00 3.85
2654 2998 1.134946 GCAAATAGGTCGGCTGCATTT 59.865 47.619 0.50 0.00 33.19 2.32
2655 2999 2.357637 GCAAATAGGTCGGCTGCATTTA 59.642 45.455 0.50 0.00 33.19 1.40
2673 3017 6.991531 TGCATTTAGGAAGCAATTTTTGTCTT 59.008 30.769 0.00 0.00 34.97 3.01
2688 3032 1.202989 TGTCTTGCATTTGGTGGCCTA 60.203 47.619 3.32 0.00 0.00 3.93
2696 3040 3.360867 CATTTGGTGGCCTACATTGGTA 58.639 45.455 3.32 0.00 0.00 3.25
2697 3041 2.799126 TTGGTGGCCTACATTGGTAG 57.201 50.000 3.32 0.00 45.41 3.18
2733 3077 3.936453 ACGCGGTGTTTGATTGTATACAT 59.064 39.130 12.47 0.00 0.00 2.29
2736 3080 5.446607 CGCGGTGTTTGATTGTATACATTGA 60.447 40.000 6.36 0.00 0.00 2.57
2775 3119 3.054875 ACAGCTACACATGACACATGGAT 60.055 43.478 14.70 6.11 0.00 3.41
2779 3123 6.261603 CAGCTACACATGACACATGGATTTAT 59.738 38.462 14.70 0.00 0.00 1.40
2796 3140 7.173032 TGGATTTATACTAGAGTGCCTCGATA 58.827 38.462 0.00 0.00 35.36 2.92
2803 3147 5.622180 ACTAGAGTGCCTCGATAACTATCA 58.378 41.667 0.00 0.00 35.36 2.15
2811 3155 4.724303 CCTCGATAACTATCATGGACGAC 58.276 47.826 0.00 0.00 32.98 4.34
2816 3160 1.758936 ACTATCATGGACGACGGTCA 58.241 50.000 9.10 0.00 45.28 4.02
2818 3162 0.379316 TATCATGGACGACGGTCACG 59.621 55.000 9.10 0.00 45.28 4.35
2841 3185 0.455815 CCACATCCGACACGATGAGA 59.544 55.000 5.62 0.00 41.92 3.27
2843 3187 1.920574 CACATCCGACACGATGAGAAC 59.079 52.381 5.62 0.00 41.92 3.01
2850 3194 1.199327 GACACGATGAGAACGGAGTCA 59.801 52.381 0.00 0.00 45.00 3.41
2867 3212 2.114670 CACGGCAAGCGATCCCATT 61.115 57.895 0.00 0.00 0.00 3.16
2869 3214 1.819208 CGGCAAGCGATCCCATTGA 60.819 57.895 3.96 0.00 0.00 2.57
2871 3216 1.031571 GGCAAGCGATCCCATTGACA 61.032 55.000 3.96 0.00 32.01 3.58
2900 3245 0.105964 ACCACTTGCTAGCGTTGTCA 59.894 50.000 10.77 0.00 0.00 3.58
2903 3248 0.944311 ACTTGCTAGCGTTGTCACCG 60.944 55.000 10.77 0.00 0.00 4.94
2978 3343 3.809832 GTGAGGATAAATACAGTGCGCAT 59.190 43.478 15.91 0.00 0.00 4.73
3028 3393 2.731691 GAAGAGGAGGCCACAACGCA 62.732 60.000 5.01 0.00 0.00 5.24
3032 3397 2.280797 GAGGCCACAACGCAGACA 60.281 61.111 5.01 0.00 0.00 3.41
3033 3398 1.672356 GAGGCCACAACGCAGACAT 60.672 57.895 5.01 0.00 0.00 3.06
3061 3426 4.408276 GCTATGTAGTAGGATGTGGGAGA 58.592 47.826 0.00 0.00 0.00 3.71
3065 3430 0.266152 AGTAGGATGTGGGAGAGGGG 59.734 60.000 0.00 0.00 0.00 4.79
3082 3447 1.294459 GGGGCCGAAGAAACTACGT 59.706 57.895 0.00 0.00 0.00 3.57
3085 3450 0.387750 GGCCGAAGAAACTACGTCGT 60.388 55.000 2.21 2.21 39.33 4.34
3095 3460 0.243907 ACTACGTCGTCTGCAATGCT 59.756 50.000 6.82 0.00 0.00 3.79
3126 3491 1.153568 CGCGGAAGAGGATGCAGAA 60.154 57.895 0.00 0.00 0.00 3.02
3127 3492 1.150567 CGCGGAAGAGGATGCAGAAG 61.151 60.000 0.00 0.00 0.00 2.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 2.531206 GAACTAGTTGCTAGCCTCGTG 58.469 52.381 14.14 2.44 37.57 4.35
153 154 1.009997 ATGGGGGAGGAGAAATGCAA 58.990 50.000 0.00 0.00 0.00 4.08
308 311 0.179009 ACTGTGCCTCACAACTGCAT 60.179 50.000 1.14 0.00 44.08 3.96
385 430 1.272769 CTAGGGGATGGCTTAGCGTAC 59.727 57.143 0.00 0.00 0.00 3.67
389 434 1.004440 CGCTAGGGGATGGCTTAGC 60.004 63.158 0.00 0.00 36.14 3.09
405 450 1.779724 CCGTATCTAGTTCTTTCGCGC 59.220 52.381 0.00 0.00 0.00 6.86
406 451 2.223433 ACCCGTATCTAGTTCTTTCGCG 60.223 50.000 0.00 0.00 0.00 5.87
422 467 1.338655 GCACATTGTTTGGTTACCCGT 59.661 47.619 0.00 0.00 0.00 5.28
599 645 3.492829 GGATCCGAGTTGTCAGATAACCC 60.493 52.174 6.43 0.00 0.00 4.11
838 1115 4.385358 AATTCGTGGGTGGCAATTTATC 57.615 40.909 0.00 0.00 0.00 1.75
1011 1321 4.666512 AGAACATCAGGTAACATTTGGCT 58.333 39.130 0.00 0.00 41.41 4.75
1136 1455 2.284625 TGGCACGGAGGAGGACAT 60.285 61.111 0.00 0.00 0.00 3.06
1299 1618 2.282958 TTGGAGCCGAGGTCGAGT 60.283 61.111 0.00 0.00 43.02 4.18
1728 2047 0.601558 GTCGTCCCAGTGTGCTTCTA 59.398 55.000 0.00 0.00 0.00 2.10
1740 2059 0.796113 GCTCGTTAAGTCGTCGTCCC 60.796 60.000 0.00 0.00 0.00 4.46
2155 2474 4.521146 AGTTCAAGAGGAGGCAATATGTG 58.479 43.478 0.00 0.00 0.00 3.21
2283 2607 3.217242 ACATCTCGTGTGGCAACTC 57.783 52.632 0.00 0.00 40.28 3.01
2341 2670 5.296748 TCGATACACAATACATGGACCATG 58.703 41.667 29.36 29.36 46.18 3.66
2370 2699 6.427441 TGGCATACCAGTCAAACCATAATAA 58.573 36.000 0.00 0.00 42.67 1.40
2402 2743 3.979948 TCACGTCTTTTCCGATACACAA 58.020 40.909 0.00 0.00 0.00 3.33
2413 2754 3.070018 CAGCTTGGAGATCACGTCTTTT 58.930 45.455 0.00 0.00 37.29 2.27
2438 2779 6.627953 GCAAGGAATTATAAGTTGCCACACAT 60.628 38.462 11.05 0.00 38.03 3.21
2454 2795 1.006400 CCTCCAAGAGGGCAAGGAATT 59.994 52.381 2.49 0.00 45.43 2.17
2499 2843 7.946219 TCTTGATGTATGGATGGATTAAAGCAT 59.054 33.333 0.00 0.00 0.00 3.79
2573 2917 3.683847 GCATCTGCTTAGTCAGGTCCAAT 60.684 47.826 0.00 0.00 38.21 3.16
2578 2922 1.209019 CCTGCATCTGCTTAGTCAGGT 59.791 52.381 3.53 0.00 42.66 4.00
2586 2930 6.155049 ACATAATTTTTACCCTGCATCTGCTT 59.845 34.615 3.53 0.00 42.66 3.91
2644 2988 0.810648 TTGCTTCCTAAATGCAGCCG 59.189 50.000 0.00 0.00 38.01 5.52
2673 3017 1.549620 CAATGTAGGCCACCAAATGCA 59.450 47.619 5.01 0.00 0.00 3.96
2676 3020 2.621556 ACCAATGTAGGCCACCAAAT 57.378 45.000 5.01 0.00 0.00 2.32
2688 3032 1.005805 TGCATCAAGCCCTACCAATGT 59.994 47.619 0.00 0.00 44.83 2.71
2696 3040 1.450312 GCGTAGTGCATCAAGCCCT 60.450 57.895 0.00 0.00 45.45 5.19
2697 3041 2.813179 CGCGTAGTGCATCAAGCCC 61.813 63.158 0.00 0.00 46.97 5.19
2733 3077 6.770785 AGCTGTTAACTCTTAACCATGTTCAA 59.229 34.615 7.22 0.00 43.73 2.69
2736 3080 7.172703 GTGTAGCTGTTAACTCTTAACCATGTT 59.827 37.037 7.22 0.00 43.73 2.71
2796 3140 2.097036 TGACCGTCGTCCATGATAGTT 58.903 47.619 0.00 0.00 38.32 2.24
2803 3147 4.430765 GCCGTGACCGTCGTCCAT 62.431 66.667 0.00 0.00 38.32 3.41
2811 3155 3.118454 GATGTGGTGCCGTGACCG 61.118 66.667 0.00 0.00 39.07 4.79
2818 3162 2.852495 ATCGTGTCGGATGTGGTGCC 62.852 60.000 0.00 0.00 0.00 5.01
2824 3168 1.467543 CGTTCTCATCGTGTCGGATGT 60.468 52.381 2.84 0.00 43.39 3.06
2826 3170 0.100682 CCGTTCTCATCGTGTCGGAT 59.899 55.000 0.00 0.00 40.29 4.18
2833 3177 0.168348 CGTGACTCCGTTCTCATCGT 59.832 55.000 0.00 0.00 0.00 3.73
2841 3185 2.665185 GCTTGCCGTGACTCCGTT 60.665 61.111 0.00 0.00 0.00 4.44
2843 3187 3.989698 ATCGCTTGCCGTGACTCCG 62.990 63.158 0.00 0.00 38.35 4.63
2850 3194 2.114670 CAATGGGATCGCTTGCCGT 61.115 57.895 11.46 0.00 39.08 5.68
2867 3212 2.429494 TGGTTCGCCATGCTGTCA 59.571 55.556 0.00 0.00 43.56 3.58
2879 3224 1.194772 GACAACGCTAGCAAGTGGTTC 59.805 52.381 16.45 0.46 37.56 3.62
2900 3245 2.640826 TCTCATGGTTTTTCCCTACGGT 59.359 45.455 0.00 0.00 34.77 4.83
2903 3248 4.017126 CCCTTCTCATGGTTTTTCCCTAC 58.983 47.826 0.00 0.00 34.77 3.18
2913 3278 1.827969 CTTCTCGTCCCTTCTCATGGT 59.172 52.381 0.00 0.00 0.00 3.55
2943 3308 0.325296 TCCTCACCGTCCTATGCCTT 60.325 55.000 0.00 0.00 0.00 4.35
2949 3314 5.301045 CACTGTATTTATCCTCACCGTCCTA 59.699 44.000 0.00 0.00 0.00 2.94
3028 3393 0.598562 CTACATAGCCGCCGATGTCT 59.401 55.000 10.91 0.00 38.15 3.41
3032 3397 1.174783 CCTACTACATAGCCGCCGAT 58.825 55.000 0.00 0.00 0.00 4.18
3033 3398 0.109153 TCCTACTACATAGCCGCCGA 59.891 55.000 0.00 0.00 0.00 5.54
3041 3406 4.202684 CCCTCTCCCACATCCTACTACATA 60.203 50.000 0.00 0.00 0.00 2.29
3082 3447 2.492088 ACTACACTAGCATTGCAGACGA 59.508 45.455 11.91 0.00 0.00 4.20
3085 3450 4.098044 GTCCTACTACACTAGCATTGCAGA 59.902 45.833 11.91 0.00 0.00 4.26
3095 3460 2.093500 TCTTCCGCGTCCTACTACACTA 60.093 50.000 4.92 0.00 0.00 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.