AutoCloner

Multiple sequence alignment - TraesCS7B01G002400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7B01G002400	chr7B	100.000	3128	0	0	1	3128	1019557	1022684	0.000000e+00	5777.0
1	TraesCS7B01G002400	chr7B	91.047	2513	179	21	653	3128	1153827	1156330	0.000000e+00	3352.0
2	TraesCS7B01G002400	chr7B	87.824	1273	130	14	881	2129	128388	129659	0.000000e+00	1469.0
3	TraesCS7B01G002400	chr7B	85.315	1253	138	20	881	2109	222278	223508	0.000000e+00	1253.0
4	TraesCS7B01G002400	chr7B	85.082	1153	148	12	950	2081	229023	230172	0.000000e+00	1155.0
5	TraesCS7B01G002400	chr7B	86.555	238	30	2	2	238	1150029	1150265	8.600000e-66	261.0
6	TraesCS7B01G002400	chr7B	79.149	235	40	7	2516	2744	550925118	550925349	1.500000e-33	154.0
7	TraesCS7B01G002400	chr7B	92.553	94	4	1	382	475	1151164	1151254	7.040000e-27	132.0
8	TraesCS7B01G002400	chr7B	86.567	67	3	6	214	280	158395450	158395390	5.600000e-08	69.4
9	TraesCS7B01G002400	chr5D	92.149	2624	136	20	550	3127	561804609	561802010	0.000000e+00	3640.0
10	TraesCS7B01G002400	chr5D	87.943	1269	133	13	881	2129	562488400	562487132	0.000000e+00	1478.0
11	TraesCS7B01G002400	chr5D	87.864	1269	134	13	881	2129	562531245	562529977	0.000000e+00	1472.0
12	TraesCS7B01G002400	chr5D	85.343	1269	144	22	881	2129	562431914	562430668	0.000000e+00	1275.0
13	TraesCS7B01G002400	chr5D	93.124	509	19	5	1	507	561805202	561804708	0.000000e+00	732.0
14	TraesCS7B01G002400	chr5D	88.462	78	7	2	2523	2598	377265773	377265696	3.320000e-15	93.5
15	TraesCS7B01G002400	chr5B	92.696	1862	100	12	550	2392	711715973	711714129	0.000000e+00	2652.0
16	TraesCS7B01G002400	chr5B	82.586	1516	178	40	881	2359	712890355	712888889	0.000000e+00	1258.0
17	TraesCS7B01G002400	chr5B	85.447	749	78	17	2391	3128	711711525	711710797	0.000000e+00	750.0
18	TraesCS7B01G002400	chr5B	83.905	379	39	9	10	379	711720133	711719768	2.990000e-90	342.0
19	TraesCS7B01G002400	chr5B	80.000	195	38	1	2570	2763	418378399	418378593	3.250000e-30	143.0
20	TraesCS7B01G002400	chr5B	93.617	94	3	1	382	475	711718734	711718644	1.510000e-28	137.0
21	TraesCS7B01G002400	chr5B	89.873	79	5	1	2523	2598	427286704	427286782	7.140000e-17	99.0
22	TraesCS7B01G002400	chr5B	89.091	55	4	1	225	277	604400468	604400414	2.010000e-07	67.6
23	TraesCS7B01G002400	chr5B	97.297	37	1	0	473	509	577082583	577082619	2.600000e-06	63.9
24	TraesCS7B01G002400	chr5B	94.595	37	2	0	473	509	618288776	618288740	1.210000e-04	58.4
25	TraesCS7B01G002400	chr1D	87.059	85	8	2	2517	2598	225598631	225598715	3.320000e-15	93.5
26	TraesCS7B01G002400	chr1A	87.059	85	8	1	2517	2598	292369887	292369803	3.320000e-15	93.5
27	TraesCS7B01G002400	chr6B	89.855	69	7	0	292	360	578896130	578896062	4.300000e-14	89.8
28	TraesCS7B01G002400	chr6B	93.878	49	1	1	235	281	275931765	275931813	4.330000e-09	73.1
29	TraesCS7B01G002400	chrUn	85.882	85	9	1	2517	2598	96558735	96558651	1.550000e-13	87.9
30	TraesCS7B01G002400	chr7A	95.745	47	0	1	233	277	359650539	359650493	1.200000e-09	75.0
31	TraesCS7B01G002400	chr1B	97.674	43	1	0	235	277	588314281	588314323	1.200000e-09	75.0
32	TraesCS7B01G002400	chr1B	92.857	42	2	1	468	509	670945897	670945937	3.370000e-05	60.2
33	TraesCS7B01G002400	chr4D	92.157	51	2	1	236	284	335473189	335473239	1.560000e-08	71.3
34	TraesCS7B01G002400	chr4B	90.741	54	3	2	226	277	505208045	505208098	1.560000e-08	71.3
35	TraesCS7B01G002400	chr4B	92.500	40	3	0	470	509	249035664	249035703	1.210000e-04	58.4
36	TraesCS7B01G002400	chr3B	92.157	51	2	1	229	277	550159419	550159469	1.560000e-08	71.3
37	TraesCS7B01G002400	chr2B	80.220	91	12	4	2757	2847	755952773	755952857	2.600000e-06	63.9
38	TraesCS7B01G002400	chr7D	97.059	34	1	0	472	505	538377157	538377124	1.210000e-04	58.4
39	TraesCS7B01G002400	chr5A	94.595	37	2	0	473	509	705848395	705848359	1.210000e-04	58.4

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7B01G002400	chr7B	1019557	1022684	3127	False	5777.000000	5777	100.000000	1	3128	1	chr7B.!!$F4	3127
1	TraesCS7B01G002400	chr7B	128388	129659	1271	False	1469.000000	1469	87.824000	881	2129	1	chr7B.!!$F1	1248
2	TraesCS7B01G002400	chr7B	222278	223508	1230	False	1253.000000	1253	85.315000	881	2109	1	chr7B.!!$F2	1228
3	TraesCS7B01G002400	chr7B	1150029	1156330	6301	False	1248.333333	3352	90.051667	2	3128	3	chr7B.!!$F6	3126
4	TraesCS7B01G002400	chr7B	229023	230172	1149	False	1155.000000	1155	85.082000	950	2081	1	chr7B.!!$F3	1131
5	TraesCS7B01G002400	chr5D	561802010	561805202	3192	True	2186.000000	3640	92.636500	1	3127	2	chr5D.!!$R5	3126
6	TraesCS7B01G002400	chr5D	562487132	562488400	1268	True	1478.000000	1478	87.943000	881	2129	1	chr5D.!!$R3	1248
7	TraesCS7B01G002400	chr5D	562529977	562531245	1268	True	1472.000000	1472	87.864000	881	2129	1	chr5D.!!$R4	1248
8	TraesCS7B01G002400	chr5D	562430668	562431914	1246	True	1275.000000	1275	85.343000	881	2129	1	chr5D.!!$R2	1248
9	TraesCS7B01G002400	chr5B	712888889	712890355	1466	True	1258.000000	1258	82.586000	881	2359	1	chr5B.!!$R3	1478
10	TraesCS7B01G002400	chr5B	711710797	711720133	9336	True	970.250000	2652	88.916250	10	3128	4	chr5B.!!$R4	3118

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
788	4543	0.611062	TGCGTCAGTAGTAGGCCAGT	60.611	55.0	5.01	0.0	0.0	4.0	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2691	9120	0.321298	ACCCGGTGTAGTGCATCAAC	60.321	55.0	0.0	0.0	0.0	3.18	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
46	47	4.008330	CTGTCAGCCATGTCAAGAGAATT	58.992	43.478	0.00	0.00	0.00	2.17
169	172	6.208599	ACATGGTAAATTCCAAGTTCGAACAT	59.791	34.615	28.78	15.87	41.09	2.71
182	192	9.931210	CCAAGTTCGAACATAAATTTATCTACC	57.069	33.333	28.78	0.00	0.00	3.18
499	2355	9.682465	ACTCCCTTTGTTTCTAAATATAAGACC	57.318	33.333	0.00	0.00	0.00	3.85
533	2422	7.945134	ACATATTTTGGAGAATTGTGGCTATC	58.055	34.615	0.00	0.00	0.00	2.08
534	2423	7.781693	ACATATTTTGGAGAATTGTGGCTATCT	59.218	33.333	0.00	0.00	0.00	1.98
535	2424	8.636213	CATATTTTGGAGAATTGTGGCTATCTT	58.364	33.333	0.00	0.00	0.00	2.40
536	2425	6.916360	TTTTGGAGAATTGTGGCTATCTTT	57.084	33.333	0.00	0.00	0.00	2.52
541	2430	4.589908	AGAATTGTGGCTATCTTTCCGTT	58.410	39.130	0.00	0.00	0.00	4.44
543	2432	6.177610	AGAATTGTGGCTATCTTTCCGTTTA	58.822	36.000	0.00	0.00	0.00	2.01
544	2433	6.657541	AGAATTGTGGCTATCTTTCCGTTTAA	59.342	34.615	0.00	0.00	0.00	1.52
545	2434	5.616488	TTGTGGCTATCTTTCCGTTTAAC	57.384	39.130	0.00	0.00	0.00	2.01
546	2435	4.901868	TGTGGCTATCTTTCCGTTTAACT	58.098	39.130	0.00	0.00	0.00	2.24
547	2436	4.693566	TGTGGCTATCTTTCCGTTTAACTG	59.306	41.667	0.00	0.00	0.00	3.16
548	2437	4.094442	GTGGCTATCTTTCCGTTTAACTGG	59.906	45.833	0.00	0.00	0.00	4.00
624	4370	3.467226	GCCAGCCAGCTACCGGTA	61.467	66.667	14.95	14.95	0.00	4.02
627	4373	1.756950	CAGCCAGCTACCGGTAGGA	60.757	63.158	36.37	9.66	41.02	2.94
639	4385	1.350019	CCGGTAGGATGGTAATTCCCC	59.650	57.143	0.00	0.00	41.02	4.81
649	4395	2.911636	TGGTAATTCCCCGTGGACTTAA	59.088	45.455	0.00	0.00	41.57	1.85
762	4513	9.220767	GACAAAGATGGTGTAAATAGAAAGACT	57.779	33.333	0.00	0.00	0.00	3.24
781	4536	5.191426	AGACTAATCCTTGCGTCAGTAGTA	58.809	41.667	0.00	0.00	0.00	1.82
788	4543	0.611062	TGCGTCAGTAGTAGGCCAGT	60.611	55.000	5.01	0.00	0.00	4.00
839	4594	5.587043	TGGGCCACGACAAGTAAAATATAAG	59.413	40.000	0.00	0.00	0.00	1.73
848	4603	7.346751	ACAAGTAAAATATAAGCCACCCATG	57.653	36.000	0.00	0.00	0.00	3.66
1053	4858	0.476771	TCCTCCTTTTGGCGGTTCTT	59.523	50.000	0.00	0.00	44.67	2.52
1086	4891	2.594592	GCAACTTCGTGCCACCCT	60.595	61.111	0.00	0.00	38.66	4.34
1345	5153	1.088340	CAACATCTCAGGGCTGCTCG	61.088	60.000	0.00	0.00	0.00	5.03
1383	5191	2.069273	CAGAACCTCACCACGTTGATC	58.931	52.381	0.00	0.00	0.00	2.92
1470	5278	2.985847	GTGCTGGCCCTTGGTGAC	60.986	66.667	0.00	0.00	0.00	3.67
1568	5376	4.337013	GGTCGGCACCATTCCATT	57.663	55.556	0.00	0.00	43.17	3.16
1763	5571	0.447011	CGACGACTTAACGAGCTCCT	59.553	55.000	8.47	0.00	37.03	3.69
2064	5876	5.489792	ACAATATCGTATCTGGGAGCAAT	57.510	39.130	0.00	0.00	0.00	3.56
2314	6131	1.226686	GAGATGTGCCTGCCTATGCG	61.227	60.000	0.00	0.00	41.78	4.73
2363	6184	8.675705	TCTTTATGGTCCATGTATTGTGTATG	57.324	34.615	15.10	0.00	0.00	2.39
2484	8912	5.941788	AGGTGTTGTCTCTCCTTGTTTTAT	58.058	37.500	0.00	0.00	0.00	1.40
2485	8913	7.074653	AGGTGTTGTCTCTCCTTGTTTTATA	57.925	36.000	0.00	0.00	0.00	0.98
2486	8914	7.162082	AGGTGTTGTCTCTCCTTGTTTTATAG	58.838	38.462	0.00	0.00	0.00	1.31
2614	9042	6.870965	GGGTAAAAATTATGTTGTGCACATCA	59.129	34.615	27.82	27.82	43.17	3.07
2671	9099	2.742774	AGCAATTTTTGTCTGGCGTTC	58.257	42.857	0.00	0.00	0.00	3.95
2674	9102	1.600023	ATTTTTGTCTGGCGTTCGGA	58.400	45.000	0.00	0.00	0.00	4.55
2691	9120	2.284112	AGGCCTGCATTGGTTGGG	60.284	61.111	3.11	0.00	0.00	4.12
2704	9133	1.143889	TGGTTGGGTTGATGCACTACA	59.856	47.619	0.00	0.00	0.00	2.74
2708	9137	1.024579	GGGTTGATGCACTACACCGG	61.025	60.000	0.00	0.00	0.00	5.28
2726	9155	5.046448	ACACCGGGTTTGATTGTATACACTA	60.046	40.000	6.32	0.00	0.00	2.74
2790	9219	1.745653	CACTAGAGTGCCTCGATGACA	59.254	52.381	0.00	0.00	39.39	3.58
2809	9238	4.124351	TCGTGGACGATGGTCGCC	62.124	66.667	1.47	3.03	45.12	5.54
2875	9304	3.182590	ATCGGCGGCATGGCATACT	62.183	57.895	20.37	0.00	45.16	2.12
2901	9350	0.396435	TAGCATTGTCGCCATAGGGG	59.604	55.000	0.00	0.00	40.85	4.79
2967	9416	3.792401	CGGTGAGGATAAATACAGTGCA	58.208	45.455	0.00	0.00	0.00	4.57
3058	9513	2.657352	TAGGATGTGGGAGGGGGCT	61.657	63.158	0.00	0.00	0.00	5.19
3059	9514	2.914734	TAGGATGTGGGAGGGGGCTG	62.915	65.000	0.00	0.00	0.00	4.85
3060	9515	2.692368	GATGTGGGAGGGGGCTGA	60.692	66.667	0.00	0.00	0.00	4.26
3061	9516	2.693864	ATGTGGGAGGGGGCTGAG	60.694	66.667	0.00	0.00	0.00	3.35
3095	9554	2.500098	GGAATGCCAGTGTAGTAGGACA	59.500	50.000	0.00	0.00	0.00	4.02
3104	9563	1.911357	TGTAGTAGGACACGGGAGAGA	59.089	52.381	0.00	0.00	0.00	3.10
3118	9577	2.705127	GGGAGAGAATGCAGAGAGGAAT	59.295	50.000	0.00	0.00	0.00	3.01

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
16	17	5.159273	TGACATGGCTGACAGTGTTATAA	57.841	39.130	0.00	0.00	0.00	0.98
27	28	5.279106	CCAAAAATTCTCTTGACATGGCTGA	60.279	40.000	0.00	0.00	0.00	4.26
34	35	6.537453	TTTCCACCAAAAATTCTCTTGACA	57.463	33.333	0.00	0.00	0.00	3.58
46	47	4.518249	GGTTTTCACCATTTCCACCAAAA	58.482	39.130	0.00	0.00	43.61	2.44
328	339	3.023119	TGCTTTGTGAAGGTTGTGTGAT	58.977	40.909	0.00	0.00	33.34	3.06
533	2422	4.149396	CGTGTAGTCCAGTTAAACGGAAAG	59.851	45.833	0.00	0.00	31.67	2.62
534	2423	4.050553	CGTGTAGTCCAGTTAAACGGAAA	58.949	43.478	0.00	0.00	31.67	3.13
535	2424	3.068024	ACGTGTAGTCCAGTTAAACGGAA	59.932	43.478	0.00	0.00	36.34	4.30
536	2425	2.622942	ACGTGTAGTCCAGTTAAACGGA	59.377	45.455	0.00	0.00	36.34	4.69
541	2430	2.813754	AGCGTACGTGTAGTCCAGTTAA	59.186	45.455	17.90	0.00	0.00	2.01
543	2432	1.068748	CAGCGTACGTGTAGTCCAGTT	60.069	52.381	17.90	0.00	0.00	3.16
544	2433	0.520404	CAGCGTACGTGTAGTCCAGT	59.480	55.000	17.90	0.00	0.00	4.00
545	2434	0.179171	CCAGCGTACGTGTAGTCCAG	60.179	60.000	17.90	0.00	0.00	3.86
546	2435	0.606130	TCCAGCGTACGTGTAGTCCA	60.606	55.000	17.90	0.00	0.00	4.02
547	2436	0.737219	ATCCAGCGTACGTGTAGTCC	59.263	55.000	17.90	0.00	0.00	3.85
548	2437	2.601741	GCTATCCAGCGTACGTGTAGTC	60.602	54.545	17.90	0.00	38.22	2.59
624	4370	0.843984	CCACGGGGAATTACCATCCT	59.156	55.000	9.50	0.00	41.20	3.24
639	4385	8.139521	AGAGAAAAACTAAAGTTAAGTCCACG	57.860	34.615	0.00	0.00	37.25	4.94
673	4419	3.690139	ACGACAGACGATGAGTAGATTGT	59.310	43.478	0.00	0.00	45.77	2.71
681	4427	8.783999	ACTATTAAAATACGACAGACGATGAG	57.216	34.615	0.00	0.00	45.77	2.90
723	4470	2.688507	TCTTTGTCCAAGCGTCTCATC	58.311	47.619	0.00	0.00	31.70	2.92
724	4471	2.839486	TCTTTGTCCAAGCGTCTCAT	57.161	45.000	0.00	0.00	31.70	2.90
762	4513	3.067742	GCCTACTACTGACGCAAGGATTA	59.932	47.826	0.00	0.00	46.39	1.75
781	4536	4.710375	TCTCTTCGTATCTTAAACTGGCCT	59.290	41.667	3.32	0.00	0.00	5.19
788	4543	7.320399	TCATGCTTGTCTCTTCGTATCTTAAA	58.680	34.615	0.00	0.00	0.00	1.52
839	4594	1.218854	GTGGCAATTCATGGGTGGC	59.781	57.895	9.72	9.72	38.26	5.01
848	4603	2.029470	TGAAATTCGTGGGTGGCAATTC	60.029	45.455	0.00	0.00	0.00	2.17
1086	4891	3.303135	AGCGCAAGGAGGTCGTCA	61.303	61.111	11.47	0.00	38.28	4.35
1314	5122	5.530915	CCCTGAGATGTTGTGAAAGTTGTTA	59.469	40.000	0.00	0.00	0.00	2.41
1470	5278	1.376942	CCTGCCCTTGAGAGCACAG	60.377	63.158	0.00	0.00	34.68	3.66
1568	5376	1.545428	GGTGAAGCTGACCAATCCACA	60.545	52.381	9.82	0.00	33.25	4.17
1763	5571	5.882040	TGTTGGTCCCTGTTATGACATTTA	58.118	37.500	0.00	0.00	34.72	1.40
1830	5638	9.928618	TTTTCATCCCCAAATATGACAGTATTA	57.071	29.630	0.00	0.00	31.99	0.98
1887	5695	1.931172	GATACGGTGTTGTGATTCCCG	59.069	52.381	0.00	0.00	44.06	5.14
1971	5779	1.002684	GATACGACACTGCTACTCCCG	60.003	57.143	0.00	0.00	0.00	5.14
2064	5876	6.320434	TGGTTCATCCCAGATACAACATTA	57.680	37.500	0.00	0.00	34.77	1.90
2314	6131	8.648097	AGATTCGATTATTACAACATATGCGAC	58.352	33.333	1.58	0.00	0.00	5.19
2363	6184	7.451566	ACCAGCCAAACCATAATATATTTCTCC	59.548	37.037	2.68	0.00	0.00	3.71
2505	8933	3.270027	CGAACAAGCCCTTGATGTATGA	58.730	45.455	14.46	0.00	42.93	2.15
2614	9042	3.981212	ACCTATTTGCAGCCTACCAAAT	58.019	40.909	7.42	7.42	42.46	2.32
2671	9099	2.361610	AACCAATGCAGGCCTCCG	60.362	61.111	0.00	0.00	0.00	4.63
2674	9102	2.284112	CCCAACCAATGCAGGCCT	60.284	61.111	0.00	0.00	0.00	5.19
2691	9120	0.321298	ACCCGGTGTAGTGCATCAAC	60.321	55.000	0.00	0.00	0.00	3.18
2704	9133	4.563140	AGTGTATACAATCAAACCCGGT	57.437	40.909	7.25	0.00	0.00	5.28
2708	9137	7.769044	ACCATGTCTAGTGTATACAATCAAACC	59.231	37.037	9.45	0.00	0.00	3.27
2726	9155	8.100791	TGTAGCTGTTAATTCTTAACCATGTCT	58.899	33.333	0.00	1.73	43.73	3.41
2740	9169	9.920133	CTCTATGTATCATGTGTAGCTGTTAAT	57.080	33.333	0.00	0.00	0.00	1.40
2851	9280	2.595463	CATGCCGCCGATGGGATT	60.595	61.111	0.00	0.00	38.09	3.01
2872	9301	3.444916	GCGACAATGCTAGCAAGTAGTA	58.555	45.455	23.54	0.00	0.00	1.82
2875	9304	1.066502	TGGCGACAATGCTAGCAAGTA	60.067	47.619	23.54	5.69	37.44	2.24
2901	9350	3.133003	TCTCGTCCCTTCTCATGGATTTC	59.867	47.826	0.00	0.00	32.20	2.17
2945	9394	2.544267	GCACTGTATTTATCCTCACCGC	59.456	50.000	0.00	0.00	0.00	5.68
2981	9430	2.093500	TCCGCGTCCTACTACACTAAGA	60.093	50.000	4.92	0.00	0.00	2.10
2982	9431	2.283298	TCCGCGTCCTACTACACTAAG	58.717	52.381	4.92	0.00	0.00	2.18
2984	9433	2.093500	TCTTCCGCGTCCTACTACACTA	60.093	50.000	4.92	0.00	0.00	2.74
3026	9479	3.069016	CACATCCTACTACATTACCGCCA	59.931	47.826	0.00	0.00	0.00	5.69
3032	9485	4.489737	CCCTCCCACATCCTACTACATTA	58.510	47.826	0.00	0.00	0.00	1.90
3058	9513	1.712056	TTCCAACCGAGTTCCTCTCA	58.288	50.000	0.00	0.00	42.88	3.27
3059	9514	2.622436	CATTCCAACCGAGTTCCTCTC	58.378	52.381	0.00	0.00	39.62	3.20
3060	9515	1.339151	GCATTCCAACCGAGTTCCTCT	60.339	52.381	0.00	0.00	0.00	3.69
3061	9516	1.087501	GCATTCCAACCGAGTTCCTC	58.912	55.000	0.00	0.00	0.00	3.71
3069	9524	1.086696	CTACACTGGCATTCCAACCG	58.913	55.000	0.00	0.00	42.91	4.44
3070	9525	2.200373	ACTACACTGGCATTCCAACC	57.800	50.000	0.00	0.00	42.91	3.77
3075	9534	3.522553	GTGTCCTACTACACTGGCATTC	58.477	50.000	0.00	0.00	45.12	2.67
3095	9554	1.110442	CTCTCTGCATTCTCTCCCGT	58.890	55.000	0.00	0.00	0.00	5.28
3099	9558	4.141981	TGTCATTCCTCTCTGCATTCTCTC	60.142	45.833	0.00	0.00	0.00	3.20
3104	9563	3.464907	CGATGTCATTCCTCTCTGCATT	58.535	45.455	0.00	0.00	0.00	3.56

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.