Multiple sequence alignment - TraesCS7B01G002100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G002100 chr7B 100.000 2933 0 0 1 2933 800066 802998 0.000000e+00 5417.0
1 TraesCS7B01G002100 chr5D 92.013 1590 69 28 434 2009 562018937 562017392 0.000000e+00 2180.0
2 TraesCS7B01G002100 chr5D 86.222 900 64 28 1924 2807 562014481 562013626 0.000000e+00 920.0
3 TraesCS7B01G002100 chr5D 89.308 318 17 7 2069 2378 562017376 562017068 1.650000e-102 383.0
4 TraesCS7B01G002100 chr5D 92.949 156 10 1 2778 2933 562016648 562016494 2.940000e-55 226.0
5 TraesCS7B01G002100 chr5D 90.625 64 3 1 375 438 562025128 562025068 6.740000e-12 82.4
6 TraesCS7B01G002100 chr5D 100.000 31 0 0 349 379 562025167 562025137 1.140000e-04 58.4
7 TraesCS7B01G002100 chr5B 87.834 1274 61 24 711 1951 712392370 712391158 0.000000e+00 1408.0
8 TraesCS7B01G002100 chr5B 92.177 588 41 2 2230 2816 712390923 712390340 0.000000e+00 826.0
9 TraesCS7B01G002100 chr5B 90.957 188 9 3 2052 2231 712391148 712390961 2.260000e-61 246.0
10 TraesCS7B01G002100 chr5B 82.635 167 12 10 5 156 712395562 712395398 6.600000e-27 132.0
11 TraesCS7B01G002100 chr2B 86.250 160 20 2 1412 1570 749686970 749686812 3.890000e-39 172.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G002100 chr7B 800066 802998 2932 False 5417.00 5417 100.00000 1 2933 1 chr7B.!!$F1 2932
1 TraesCS7B01G002100 chr5D 562013626 562018937 5311 True 927.25 2180 90.12300 434 2933 4 chr5D.!!$R1 2499
2 TraesCS7B01G002100 chr5B 712390340 712395562 5222 True 653.00 1408 88.40075 5 2816 4 chr5B.!!$R1 2811

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
410 616 0.037232 AAACGGGCGAGAGGAAGAAG 60.037 55.0 0.0 0.0 0.0 2.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1953 4722 0.474184 CCACCGGCCATCTCCTAAAT 59.526 55.0 0.0 0.0 0.0 1.4 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
68 76 3.063743 GCGTGGGCAGGCCAATAAC 62.064 63.158 19.30 4.07 39.62 1.89
69 77 1.677300 CGTGGGCAGGCCAATAACA 60.677 57.895 19.30 0.00 37.98 2.41
70 78 1.247419 CGTGGGCAGGCCAATAACAA 61.247 55.000 19.30 0.00 37.98 2.83
72 80 2.383855 GTGGGCAGGCCAATAACAATA 58.616 47.619 19.30 0.00 37.98 1.90
73 81 2.763448 GTGGGCAGGCCAATAACAATAA 59.237 45.455 19.30 0.00 37.98 1.40
76 84 3.244181 GGGCAGGCCAATAACAATAATGG 60.244 47.826 13.10 0.00 35.50 3.16
87 95 6.727824 ATAACAATAATGGCATCGAGCTAC 57.272 37.500 0.00 0.00 44.79 3.58
89 97 4.060900 ACAATAATGGCATCGAGCTACAG 58.939 43.478 0.00 0.00 44.79 2.74
90 98 4.060900 CAATAATGGCATCGAGCTACAGT 58.939 43.478 0.00 0.00 44.79 3.55
91 99 5.221441 ACAATAATGGCATCGAGCTACAGTA 60.221 40.000 0.00 0.59 44.79 2.74
108 117 7.569297 GCTACAGTATATATAGCTGCTCTACG 58.431 42.308 4.91 2.19 38.62 3.51
110 119 7.542534 ACAGTATATATAGCTGCTCTACGTC 57.457 40.000 4.91 0.00 33.87 4.34
111 120 7.332557 ACAGTATATATAGCTGCTCTACGTCT 58.667 38.462 4.91 0.00 33.87 4.18
114 126 6.671614 ATATATAGCTGCTCTACGTCTGAC 57.328 41.667 4.91 0.00 0.00 3.51
128 140 7.796838 TCTACGTCTGACAAGAAAATCAAATG 58.203 34.615 8.73 0.00 33.05 2.32
151 167 7.974482 TGAATTGAGCTAACATAGATGGATG 57.026 36.000 0.00 0.00 0.00 3.51
156 172 5.039920 AGCTAACATAGATGGATGCACAA 57.960 39.130 0.00 0.00 0.00 3.33
157 173 4.818546 AGCTAACATAGATGGATGCACAAC 59.181 41.667 0.00 0.00 0.00 3.32
158 174 4.576053 GCTAACATAGATGGATGCACAACA 59.424 41.667 0.00 0.00 0.00 3.33
159 175 5.240183 GCTAACATAGATGGATGCACAACAT 59.760 40.000 0.00 0.00 43.54 2.71
160 176 6.427853 GCTAACATAGATGGATGCACAACATA 59.572 38.462 0.00 0.00 39.84 2.29
161 177 6.624352 AACATAGATGGATGCACAACATAC 57.376 37.500 0.00 0.00 39.84 2.39
167 183 4.551702 TGGATGCACAACATACAGTACT 57.448 40.909 0.00 0.00 45.14 2.73
168 184 4.503910 TGGATGCACAACATACAGTACTC 58.496 43.478 0.00 0.00 45.14 2.59
169 185 3.871594 GGATGCACAACATACAGTACTCC 59.128 47.826 0.00 0.00 39.69 3.85
217 419 4.451096 CCGGCAGCACGTCTTAATTTATAT 59.549 41.667 0.00 0.00 0.00 0.86
218 420 5.636121 CCGGCAGCACGTCTTAATTTATATA 59.364 40.000 0.00 0.00 0.00 0.86
219 421 6.400727 CCGGCAGCACGTCTTAATTTATATAC 60.401 42.308 0.00 0.00 0.00 1.47
220 422 6.522761 GGCAGCACGTCTTAATTTATATACG 58.477 40.000 0.00 0.00 36.48 3.06
221 423 6.145048 GGCAGCACGTCTTAATTTATATACGT 59.855 38.462 0.00 0.00 43.62 3.57
222 424 7.326789 GGCAGCACGTCTTAATTTATATACGTA 59.673 37.037 0.00 0.00 41.17 3.57
223 425 8.363755 GCAGCACGTCTTAATTTATATACGTAG 58.636 37.037 0.08 0.00 41.17 3.51
307 513 4.825085 ACTCCGCTGAATTTACCAAAGAAA 59.175 37.500 0.00 0.00 0.00 2.52
308 514 5.116069 TCCGCTGAATTTACCAAAGAAAC 57.884 39.130 0.00 0.00 0.00 2.78
317 523 2.959507 ACCAAAGAAACTGTTGCCAC 57.040 45.000 0.00 0.00 0.00 5.01
318 524 2.456577 ACCAAAGAAACTGTTGCCACT 58.543 42.857 0.00 0.00 0.00 4.00
319 525 2.831526 ACCAAAGAAACTGTTGCCACTT 59.168 40.909 0.00 0.00 0.00 3.16
320 526 3.260632 ACCAAAGAAACTGTTGCCACTTT 59.739 39.130 0.00 2.26 0.00 2.66
321 527 4.252878 CCAAAGAAACTGTTGCCACTTTT 58.747 39.130 0.00 0.00 0.00 2.27
322 528 4.694982 CCAAAGAAACTGTTGCCACTTTTT 59.305 37.500 0.00 0.00 0.00 1.94
323 529 5.390779 CCAAAGAAACTGTTGCCACTTTTTG 60.391 40.000 0.00 0.00 0.00 2.44
332 538 3.608316 TGCCACTTTTTGGGAATATGC 57.392 42.857 0.00 0.00 44.20 3.14
333 539 2.902486 TGCCACTTTTTGGGAATATGCA 59.098 40.909 0.00 0.00 44.20 3.96
334 540 3.518705 TGCCACTTTTTGGGAATATGCAT 59.481 39.130 3.79 3.79 44.20 3.96
335 541 4.623409 TGCCACTTTTTGGGAATATGCATG 60.623 41.667 10.16 0.00 44.20 4.06
336 542 3.872771 CCACTTTTTGGGAATATGCATGC 59.127 43.478 11.82 11.82 42.54 4.06
337 543 4.505808 CACTTTTTGGGAATATGCATGCA 58.494 39.130 25.04 25.04 0.00 3.96
338 544 5.120399 CACTTTTTGGGAATATGCATGCAT 58.880 37.500 33.92 33.92 40.19 3.96
339 545 5.007234 CACTTTTTGGGAATATGCATGCATG 59.993 40.000 37.43 22.70 37.82 4.06
351 557 2.991434 CATGCATGCCTCTAATCAGC 57.009 50.000 14.93 0.00 0.00 4.26
352 558 1.197036 CATGCATGCCTCTAATCAGCG 59.803 52.381 14.93 0.00 0.00 5.18
353 559 0.533531 TGCATGCCTCTAATCAGCGG 60.534 55.000 16.68 0.00 0.00 5.52
354 560 0.250038 GCATGCCTCTAATCAGCGGA 60.250 55.000 6.36 0.00 0.00 5.54
355 561 1.811558 GCATGCCTCTAATCAGCGGAA 60.812 52.381 6.36 0.00 0.00 4.30
356 562 2.141517 CATGCCTCTAATCAGCGGAAG 58.858 52.381 0.00 0.00 0.00 3.46
357 563 1.195115 TGCCTCTAATCAGCGGAAGT 58.805 50.000 0.00 0.00 0.00 3.01
358 564 2.384828 TGCCTCTAATCAGCGGAAGTA 58.615 47.619 0.00 0.00 0.00 2.24
359 565 2.100916 TGCCTCTAATCAGCGGAAGTAC 59.899 50.000 0.00 0.00 0.00 2.73
360 566 2.859032 GCCTCTAATCAGCGGAAGTACG 60.859 54.545 0.00 0.00 0.00 3.67
361 567 2.358267 CCTCTAATCAGCGGAAGTACGT 59.642 50.000 0.00 0.00 35.98 3.57
362 568 3.548415 CCTCTAATCAGCGGAAGTACGTC 60.548 52.174 0.00 0.00 35.98 4.34
363 569 2.031314 TCTAATCAGCGGAAGTACGTCG 59.969 50.000 0.00 2.35 35.98 5.12
368 574 4.107051 CGGAAGTACGTCGCCGGT 62.107 66.667 1.90 0.00 40.08 5.28
369 575 2.505557 GGAAGTACGTCGCCGGTG 60.506 66.667 9.28 9.28 38.78 4.94
370 576 2.562912 GAAGTACGTCGCCGGTGA 59.437 61.111 15.21 15.21 38.78 4.02
371 577 1.513586 GAAGTACGTCGCCGGTGAG 60.514 63.158 20.25 14.85 38.78 3.51
372 578 2.862347 GAAGTACGTCGCCGGTGAGG 62.862 65.000 30.57 30.57 44.97 3.86
373 579 3.434319 GTACGTCGCCGGTGAGGA 61.434 66.667 36.70 20.94 45.00 3.71
374 580 3.434319 TACGTCGCCGGTGAGGAC 61.434 66.667 36.70 21.52 45.00 3.85
377 583 4.477975 GTCGCCGGTGAGGACGAG 62.478 72.222 20.25 0.00 44.63 4.18
380 586 4.500116 GCCGGTGAGGACGAGCTC 62.500 72.222 2.73 2.73 45.00 4.09
381 587 3.827898 CCGGTGAGGACGAGCTCC 61.828 72.222 8.47 0.00 45.00 4.70
382 588 4.180946 CGGTGAGGACGAGCTCCG 62.181 72.222 8.47 6.07 45.10 4.63
383 589 3.827898 GGTGAGGACGAGCTCCGG 61.828 72.222 8.47 0.00 45.10 5.14
384 590 3.063084 GTGAGGACGAGCTCCGGT 61.063 66.667 8.47 0.15 45.10 5.28
385 591 3.062466 TGAGGACGAGCTCCGGTG 61.062 66.667 8.47 0.00 45.10 4.94
386 592 2.750637 GAGGACGAGCTCCGGTGA 60.751 66.667 8.47 0.00 45.10 4.02
387 593 2.043852 AGGACGAGCTCCGGTGAT 60.044 61.111 8.47 0.00 45.10 3.06
388 594 2.105128 GGACGAGCTCCGGTGATG 59.895 66.667 8.47 0.00 43.93 3.07
389 595 2.105128 GACGAGCTCCGGTGATGG 59.895 66.667 8.47 4.78 43.93 3.51
390 596 3.432051 GACGAGCTCCGGTGATGGG 62.432 68.421 8.47 0.00 43.93 4.00
391 597 3.147595 CGAGCTCCGGTGATGGGA 61.148 66.667 8.47 0.00 33.91 4.37
392 598 2.721167 CGAGCTCCGGTGATGGGAA 61.721 63.158 8.47 0.00 32.02 3.97
393 599 1.602237 GAGCTCCGGTGATGGGAAA 59.398 57.895 7.92 0.00 32.02 3.13
394 600 0.744771 GAGCTCCGGTGATGGGAAAC 60.745 60.000 7.92 0.00 32.02 2.78
395 601 2.106683 GCTCCGGTGATGGGAAACG 61.107 63.158 7.92 0.00 32.02 3.60
396 602 1.449601 CTCCGGTGATGGGAAACGG 60.450 63.158 0.00 0.00 45.52 4.44
397 603 2.437716 CCGGTGATGGGAAACGGG 60.438 66.667 0.00 0.00 40.79 5.28
398 604 3.131478 CGGTGATGGGAAACGGGC 61.131 66.667 0.00 0.00 0.00 6.13
399 605 3.131478 GGTGATGGGAAACGGGCG 61.131 66.667 0.00 0.00 0.00 6.13
400 606 2.046700 GTGATGGGAAACGGGCGA 60.047 61.111 0.00 0.00 0.00 5.54
401 607 2.106683 GTGATGGGAAACGGGCGAG 61.107 63.158 0.00 0.00 0.00 5.03
402 608 2.287274 TGATGGGAAACGGGCGAGA 61.287 57.895 0.00 0.00 0.00 4.04
403 609 1.521681 GATGGGAAACGGGCGAGAG 60.522 63.158 0.00 0.00 0.00 3.20
404 610 2.925162 GATGGGAAACGGGCGAGAGG 62.925 65.000 0.00 0.00 0.00 3.69
405 611 3.387947 GGGAAACGGGCGAGAGGA 61.388 66.667 0.00 0.00 0.00 3.71
406 612 2.660802 GGAAACGGGCGAGAGGAA 59.339 61.111 0.00 0.00 0.00 3.36
407 613 1.448013 GGAAACGGGCGAGAGGAAG 60.448 63.158 0.00 0.00 0.00 3.46
408 614 1.590147 GAAACGGGCGAGAGGAAGA 59.410 57.895 0.00 0.00 0.00 2.87
409 615 0.037605 GAAACGGGCGAGAGGAAGAA 60.038 55.000 0.00 0.00 0.00 2.52
410 616 0.037232 AAACGGGCGAGAGGAAGAAG 60.037 55.000 0.00 0.00 0.00 2.85
411 617 0.898789 AACGGGCGAGAGGAAGAAGA 60.899 55.000 0.00 0.00 0.00 2.87
412 618 1.316706 ACGGGCGAGAGGAAGAAGAG 61.317 60.000 0.00 0.00 0.00 2.85
413 619 1.032657 CGGGCGAGAGGAAGAAGAGA 61.033 60.000 0.00 0.00 0.00 3.10
414 620 0.744281 GGGCGAGAGGAAGAAGAGAG 59.256 60.000 0.00 0.00 0.00 3.20
415 621 1.683629 GGGCGAGAGGAAGAAGAGAGA 60.684 57.143 0.00 0.00 0.00 3.10
416 622 1.676006 GGCGAGAGGAAGAAGAGAGAG 59.324 57.143 0.00 0.00 0.00 3.20
417 623 1.065551 GCGAGAGGAAGAAGAGAGAGC 59.934 57.143 0.00 0.00 0.00 4.09
418 624 2.364632 CGAGAGGAAGAAGAGAGAGCA 58.635 52.381 0.00 0.00 0.00 4.26
419 625 2.355756 CGAGAGGAAGAAGAGAGAGCAG 59.644 54.545 0.00 0.00 0.00 4.24
420 626 2.689983 GAGAGGAAGAAGAGAGAGCAGG 59.310 54.545 0.00 0.00 0.00 4.85
421 627 1.136891 GAGGAAGAAGAGAGAGCAGGC 59.863 57.143 0.00 0.00 0.00 4.85
422 628 1.194218 GGAAGAAGAGAGAGCAGGCT 58.806 55.000 0.00 0.00 0.00 4.58
423 629 2.024464 AGGAAGAAGAGAGAGCAGGCTA 60.024 50.000 0.00 0.00 0.00 3.93
424 630 2.362077 GGAAGAAGAGAGAGCAGGCTAG 59.638 54.545 0.00 0.00 0.00 3.42
425 631 2.071778 AGAAGAGAGAGCAGGCTAGG 57.928 55.000 0.00 0.00 0.00 3.02
426 632 0.389025 GAAGAGAGAGCAGGCTAGGC 59.611 60.000 8.55 8.55 0.00 3.93
427 633 0.325110 AAGAGAGAGCAGGCTAGGCA 60.325 55.000 19.70 0.00 0.00 4.75
428 634 0.756442 AGAGAGAGCAGGCTAGGCAG 60.756 60.000 19.70 12.04 0.00 4.85
451 657 1.270893 GGGGTGTTGAAGACCAGTCTC 60.271 57.143 13.83 0.00 39.39 3.36
494 700 4.037208 GCATTGATAAATGGACCTCACCTG 59.963 45.833 4.90 0.00 0.00 4.00
519 726 7.068593 TGGCTATCATAAACCCTTTCTTTCATG 59.931 37.037 0.00 0.00 0.00 3.07
520 727 6.920210 GCTATCATAAACCCTTTCTTTCATGC 59.080 38.462 0.00 0.00 0.00 4.06
544 751 6.595716 GCAAGGTATGTTCTAGAGTGTGATTT 59.404 38.462 0.00 0.00 0.00 2.17
549 756 9.167311 GGTATGTTCTAGAGTGTGATTTTGATT 57.833 33.333 0.00 0.00 0.00 2.57
613 820 6.861055 CAGTGTTTTATGCAACGAAATTACCT 59.139 34.615 0.00 0.00 0.00 3.08
661 882 6.455360 AATTCGTACTAGATCGGTGGTTTA 57.545 37.500 0.00 0.00 0.00 2.01
688 909 4.657814 ACCTAGTCCATGGTTTTGATGT 57.342 40.909 12.58 0.00 31.62 3.06
744 3460 9.567776 TCTCCAATCAAATTACTTTTGTACTGA 57.432 29.630 0.00 0.00 44.25 3.41
795 3516 2.125512 GGCAGCTTGGACGACGAT 60.126 61.111 0.00 0.00 0.00 3.73
797 3518 2.508891 GCAGCTTGGACGACGATCG 61.509 63.158 14.88 14.88 46.93 3.69
798 3519 1.874019 CAGCTTGGACGACGATCGG 60.874 63.158 20.98 4.82 45.59 4.18
823 3545 1.324383 CAACCCTAACCGCCAAAACT 58.676 50.000 0.00 0.00 0.00 2.66
826 3548 1.165270 CCCTAACCGCCAAAACTGAG 58.835 55.000 0.00 0.00 0.00 3.35
897 3639 0.813184 CAACAGCCAGCCATCGAATT 59.187 50.000 0.00 0.00 0.00 2.17
922 3664 4.440127 CCTGCAATGCAACCCCGC 62.440 66.667 9.92 0.00 38.41 6.13
941 3683 2.283529 ACCGTTGCACGAGGGATCT 61.284 57.895 4.17 0.00 46.05 2.75
942 3684 1.811266 CCGTTGCACGAGGGATCTG 60.811 63.158 9.75 0.00 46.05 2.90
943 3685 2.456119 CGTTGCACGAGGGATCTGC 61.456 63.158 3.04 0.00 46.05 4.26
958 3700 0.179702 TCTGCTAGCTGCCATTCCTG 59.820 55.000 17.23 0.00 42.00 3.86
959 3701 1.445716 CTGCTAGCTGCCATTCCTGC 61.446 60.000 17.23 0.00 42.00 4.85
966 3708 2.044946 GCCATTCCTGCCGGTCTT 60.045 61.111 1.90 0.00 0.00 3.01
1070 3812 4.154347 CAGCGTGGCCTCCTCCTC 62.154 72.222 3.32 0.00 0.00 3.71
1122 3879 2.434185 TCCAGCGATGACGGCAAC 60.434 61.111 0.06 0.00 40.15 4.17
1632 4395 4.767255 CTGCTGGACGAGGTGGCC 62.767 72.222 0.00 0.00 0.00 5.36
1881 4650 1.517832 GCTCTACATGGTGACGCCT 59.482 57.895 6.60 0.00 38.35 5.52
1952 4721 1.422402 ACCAAAACGCCCTCTCCTTAA 59.578 47.619 0.00 0.00 0.00 1.85
1953 4722 2.158579 ACCAAAACGCCCTCTCCTTAAA 60.159 45.455 0.00 0.00 0.00 1.52
1954 4723 3.089284 CCAAAACGCCCTCTCCTTAAAT 58.911 45.455 0.00 0.00 0.00 1.40
1955 4724 3.509967 CCAAAACGCCCTCTCCTTAAATT 59.490 43.478 0.00 0.00 0.00 1.82
1956 4725 4.021456 CCAAAACGCCCTCTCCTTAAATTT 60.021 41.667 0.00 0.00 0.00 1.82
1976 4745 2.190578 GAGATGGCCGGTGGAAGG 59.809 66.667 1.90 0.00 0.00 3.46
1980 4755 3.268103 ATGGCCGGTGGAAGGTGTC 62.268 63.158 1.90 0.00 0.00 3.67
1998 4773 1.521457 CATCGGTGATGGTCGGGTG 60.521 63.158 0.00 0.00 36.51 4.61
2009 4784 3.479203 TCGGGTGGCCCTGCTATG 61.479 66.667 0.00 0.00 42.67 2.23
2011 4786 4.127744 GGGTGGCCCTGCTATGCA 62.128 66.667 0.00 0.00 41.34 3.96
2014 4789 1.454479 GTGGCCCTGCTATGCATGT 60.454 57.895 10.16 0.00 38.13 3.21
2016 4791 0.109153 TGGCCCTGCTATGCATGTAG 59.891 55.000 10.16 8.21 38.13 2.74
2024 4799 4.060900 CTGCTATGCATGTAGGGTTGTAG 58.939 47.826 10.16 0.00 38.13 2.74
2025 4800 3.181455 TGCTATGCATGTAGGGTTGTAGG 60.181 47.826 10.16 0.00 31.71 3.18
2026 4801 3.807209 GCTATGCATGTAGGGTTGTAGGG 60.807 52.174 10.16 0.00 0.00 3.53
2027 4802 0.916086 TGCATGTAGGGTTGTAGGGG 59.084 55.000 0.00 0.00 0.00 4.79
2028 4803 0.916809 GCATGTAGGGTTGTAGGGGT 59.083 55.000 0.00 0.00 0.00 4.95
2029 4804 1.408266 GCATGTAGGGTTGTAGGGGTG 60.408 57.143 0.00 0.00 0.00 4.61
2030 4805 1.913419 CATGTAGGGTTGTAGGGGTGT 59.087 52.381 0.00 0.00 0.00 4.16
2031 4806 1.354101 TGTAGGGTTGTAGGGGTGTG 58.646 55.000 0.00 0.00 0.00 3.82
2032 4807 1.132785 TGTAGGGTTGTAGGGGTGTGA 60.133 52.381 0.00 0.00 0.00 3.58
2033 4808 1.553704 GTAGGGTTGTAGGGGTGTGAG 59.446 57.143 0.00 0.00 0.00 3.51
2034 4809 0.192566 AGGGTTGTAGGGGTGTGAGA 59.807 55.000 0.00 0.00 0.00 3.27
2035 4810 0.613777 GGGTTGTAGGGGTGTGAGAG 59.386 60.000 0.00 0.00 0.00 3.20
2036 4811 0.036294 GGTTGTAGGGGTGTGAGAGC 60.036 60.000 0.00 0.00 0.00 4.09
2037 4812 0.977395 GTTGTAGGGGTGTGAGAGCT 59.023 55.000 0.00 0.00 0.00 4.09
2038 4813 2.176889 GTTGTAGGGGTGTGAGAGCTA 58.823 52.381 0.00 0.00 0.00 3.32
2039 4814 1.848652 TGTAGGGGTGTGAGAGCTAC 58.151 55.000 0.00 0.00 0.00 3.58
2040 4815 1.112950 GTAGGGGTGTGAGAGCTACC 58.887 60.000 0.00 0.00 0.00 3.18
2045 4820 0.537653 GGTGTGAGAGCTACCCTTCC 59.462 60.000 0.00 0.00 0.00 3.46
2046 4821 1.562783 GTGTGAGAGCTACCCTTCCT 58.437 55.000 0.00 0.00 0.00 3.36
2047 4822 1.478916 GTGTGAGAGCTACCCTTCCTC 59.521 57.143 0.00 0.00 0.00 3.71
2048 4823 1.077169 TGTGAGAGCTACCCTTCCTCA 59.923 52.381 0.00 0.00 0.00 3.86
2049 4824 2.180276 GTGAGAGCTACCCTTCCTCAA 58.820 52.381 0.99 0.00 35.89 3.02
2050 4825 2.567615 GTGAGAGCTACCCTTCCTCAAA 59.432 50.000 0.99 0.00 35.89 2.69
2071 4846 4.730949 AATGCAAATGCTCATGCTTAGT 57.269 36.364 6.97 0.00 42.97 2.24
2166 4949 9.379791 GGTTGAAAGAAGTAAAGCTAAGCTATA 57.620 33.333 0.00 0.00 38.25 1.31
2169 4952 9.804758 TGAAAGAAGTAAAGCTAAGCTATACTC 57.195 33.333 0.00 0.00 38.25 2.59
2222 5005 5.587844 GGAGCATGGATCATACATTCATACC 59.412 44.000 0.00 0.00 0.00 2.73
2285 5114 3.189287 CACCTCAACTACAAATCTGCCAC 59.811 47.826 0.00 0.00 0.00 5.01
2309 5138 8.085296 CACGAGAGGCTTCAAGATACTATAATT 58.915 37.037 0.00 0.00 0.00 1.40
2365 5194 2.553602 ACGATTCTTTCACTGCATGCAA 59.446 40.909 22.88 3.76 0.00 4.08
2434 8308 7.192232 GCAAAAATGGTTTATTGCAGAAACAA 58.808 30.769 21.18 14.32 45.61 2.83
2442 8316 7.335422 TGGTTTATTGCAGAAACAAAACAACAT 59.665 29.630 21.18 0.00 38.32 2.71
2443 8317 8.180920 GGTTTATTGCAGAAACAAAACAACATT 58.819 29.630 21.18 0.00 38.32 2.71
2495 8369 5.632034 ATACCTAGTTCTTCCAATGACCC 57.368 43.478 0.00 0.00 0.00 4.46
2509 8383 2.606519 ACCCGCAACTAGGCAGGA 60.607 61.111 0.73 0.00 34.87 3.86
2533 8407 1.342474 GGGACATCTGACTCTCCCTCA 60.342 57.143 8.31 0.00 39.59 3.86
2536 8410 0.385029 CATCTGACTCTCCCTCAGCG 59.615 60.000 0.00 0.00 35.95 5.18
2557 8431 1.586154 CCTCGCGGAAAATGGCAACT 61.586 55.000 6.13 0.00 37.61 3.16
2609 8483 0.812014 TTCAACGTGAGCTTCGGCAA 60.812 50.000 14.72 3.94 44.74 4.52
2664 8538 2.666190 GTGGCGAGCAAGAGCACA 60.666 61.111 0.00 0.00 45.49 4.57
2682 8556 1.229820 ACATGCCCTCCACTACCCA 60.230 57.895 0.00 0.00 0.00 4.51
2684 8558 0.107017 CATGCCCTCCACTACCCAAG 60.107 60.000 0.00 0.00 0.00 3.61
2686 8560 2.998949 CCCTCCACTACCCAAGGC 59.001 66.667 0.00 0.00 0.00 4.35
2689 8563 1.079127 CTCCACTACCCAAGGCACG 60.079 63.158 0.00 0.00 0.00 5.34
2774 8648 5.877012 TGGTATTCAAACAGAAGAGAGCATC 59.123 40.000 0.00 0.00 40.15 3.91
2816 8690 4.223556 TCTACAGTCCCAACAACACAAA 57.776 40.909 0.00 0.00 0.00 2.83
2817 8691 4.787551 TCTACAGTCCCAACAACACAAAT 58.212 39.130 0.00 0.00 0.00 2.32
2818 8692 3.799281 ACAGTCCCAACAACACAAATG 57.201 42.857 0.00 0.00 0.00 2.32
2819 8693 2.430332 ACAGTCCCAACAACACAAATGG 59.570 45.455 0.00 0.00 0.00 3.16
2822 8696 2.998316 CCCAACAACACAAATGGGTT 57.002 45.000 0.00 0.00 46.13 4.11
2823 8697 3.274095 CCCAACAACACAAATGGGTTT 57.726 42.857 0.00 0.00 46.13 3.27
2824 8698 2.941720 CCCAACAACACAAATGGGTTTG 59.058 45.455 0.00 0.00 46.13 2.93
2825 8699 2.354199 CCAACAACACAAATGGGTTTGC 59.646 45.455 0.00 0.00 46.84 3.68
2826 8700 3.269178 CAACAACACAAATGGGTTTGCT 58.731 40.909 0.00 0.00 46.84 3.91
2827 8701 3.625649 ACAACACAAATGGGTTTGCTT 57.374 38.095 0.00 0.00 46.84 3.91
2828 8702 3.269178 ACAACACAAATGGGTTTGCTTG 58.731 40.909 0.00 0.00 46.84 4.01
2829 8703 3.055530 ACAACACAAATGGGTTTGCTTGA 60.056 39.130 0.00 0.00 46.84 3.02
2830 8704 4.128643 CAACACAAATGGGTTTGCTTGAT 58.871 39.130 0.00 0.00 46.84 2.57
2831 8705 3.731089 ACACAAATGGGTTTGCTTGATG 58.269 40.909 1.12 0.00 46.84 3.07
2832 8706 3.387374 ACACAAATGGGTTTGCTTGATGA 59.613 39.130 1.12 0.00 46.84 2.92
2833 8707 4.141756 ACACAAATGGGTTTGCTTGATGAA 60.142 37.500 1.12 0.00 46.84 2.57
2834 8708 4.449743 CACAAATGGGTTTGCTTGATGAAG 59.550 41.667 1.12 0.00 46.84 3.02
2835 8709 4.344679 ACAAATGGGTTTGCTTGATGAAGA 59.655 37.500 0.00 0.00 46.84 2.87
2836 8710 5.163322 ACAAATGGGTTTGCTTGATGAAGAA 60.163 36.000 0.00 0.00 46.84 2.52
2837 8711 4.525912 ATGGGTTTGCTTGATGAAGAAC 57.474 40.909 0.00 0.00 0.00 3.01
2838 8712 2.627699 TGGGTTTGCTTGATGAAGAACC 59.372 45.455 6.90 6.90 36.19 3.62
2839 8713 2.627699 GGGTTTGCTTGATGAAGAACCA 59.372 45.455 14.58 0.00 37.62 3.67
2840 8714 3.069443 GGGTTTGCTTGATGAAGAACCAA 59.931 43.478 14.58 0.00 37.62 3.67
2841 8715 4.262592 GGGTTTGCTTGATGAAGAACCAAT 60.263 41.667 14.58 0.00 37.62 3.16
2842 8716 4.925646 GGTTTGCTTGATGAAGAACCAATC 59.074 41.667 9.67 0.00 36.62 2.67
2843 8717 5.279156 GGTTTGCTTGATGAAGAACCAATCT 60.279 40.000 9.67 0.00 36.62 2.40
2844 8718 5.381174 TTGCTTGATGAAGAACCAATCTG 57.619 39.130 0.00 0.00 38.79 2.90
2845 8719 4.654915 TGCTTGATGAAGAACCAATCTGA 58.345 39.130 0.00 0.00 38.79 3.27
2846 8720 4.698780 TGCTTGATGAAGAACCAATCTGAG 59.301 41.667 0.00 0.00 38.79 3.35
2847 8721 4.699257 GCTTGATGAAGAACCAATCTGAGT 59.301 41.667 0.00 0.00 38.79 3.41
2848 8722 5.182760 GCTTGATGAAGAACCAATCTGAGTT 59.817 40.000 0.00 0.00 38.79 3.01
2849 8723 6.372659 GCTTGATGAAGAACCAATCTGAGTTA 59.627 38.462 0.00 0.00 38.79 2.24
2850 8724 7.625185 GCTTGATGAAGAACCAATCTGAGTTAC 60.625 40.741 0.00 0.00 38.79 2.50
2851 8725 6.173339 TGATGAAGAACCAATCTGAGTTACC 58.827 40.000 0.00 0.00 38.79 2.85
2852 8726 5.825593 TGAAGAACCAATCTGAGTTACCT 57.174 39.130 0.00 0.00 38.79 3.08
2853 8727 5.794894 TGAAGAACCAATCTGAGTTACCTC 58.205 41.667 0.00 0.00 38.79 3.85
2854 8728 4.828072 AGAACCAATCTGAGTTACCTCC 57.172 45.455 0.00 0.00 36.88 4.30
2855 8729 4.430441 AGAACCAATCTGAGTTACCTCCT 58.570 43.478 0.00 0.00 36.88 3.69
2856 8730 5.590818 AGAACCAATCTGAGTTACCTCCTA 58.409 41.667 0.00 0.00 36.88 2.94
2857 8731 6.023603 AGAACCAATCTGAGTTACCTCCTAA 58.976 40.000 0.00 0.00 36.88 2.69
2858 8732 6.674419 AGAACCAATCTGAGTTACCTCCTAAT 59.326 38.462 0.00 0.00 36.88 1.73
2859 8733 7.844779 AGAACCAATCTGAGTTACCTCCTAATA 59.155 37.037 0.00 0.00 36.88 0.98
2860 8734 7.989947 ACCAATCTGAGTTACCTCCTAATAA 57.010 36.000 0.00 0.00 36.86 1.40
2861 8735 8.568617 ACCAATCTGAGTTACCTCCTAATAAT 57.431 34.615 0.00 0.00 36.86 1.28
2862 8736 8.432805 ACCAATCTGAGTTACCTCCTAATAATG 58.567 37.037 0.00 0.00 36.86 1.90
2863 8737 7.880195 CCAATCTGAGTTACCTCCTAATAATGG 59.120 40.741 0.00 0.00 36.86 3.16
2864 8738 8.432805 CAATCTGAGTTACCTCCTAATAATGGT 58.567 37.037 0.00 0.00 36.86 3.55
2865 8739 7.989947 TCTGAGTTACCTCCTAATAATGGTT 57.010 36.000 0.00 0.00 36.86 3.67
2866 8740 8.019656 TCTGAGTTACCTCCTAATAATGGTTC 57.980 38.462 0.00 0.00 36.86 3.62
2867 8741 6.812998 TGAGTTACCTCCTAATAATGGTTCG 58.187 40.000 0.00 0.00 36.86 3.95
2868 8742 5.608449 AGTTACCTCCTAATAATGGTTCGC 58.392 41.667 0.00 0.00 34.33 4.70
2869 8743 5.365895 AGTTACCTCCTAATAATGGTTCGCT 59.634 40.000 0.00 0.00 34.33 4.93
2870 8744 4.338379 ACCTCCTAATAATGGTTCGCTC 57.662 45.455 0.00 0.00 0.00 5.03
2871 8745 3.709653 ACCTCCTAATAATGGTTCGCTCA 59.290 43.478 0.00 0.00 0.00 4.26
2872 8746 4.348168 ACCTCCTAATAATGGTTCGCTCAT 59.652 41.667 0.00 0.00 0.00 2.90
2873 8747 5.542635 ACCTCCTAATAATGGTTCGCTCATA 59.457 40.000 0.00 0.00 0.00 2.15
2874 8748 5.869888 CCTCCTAATAATGGTTCGCTCATAC 59.130 44.000 0.00 0.00 0.00 2.39
2875 8749 6.413783 TCCTAATAATGGTTCGCTCATACA 57.586 37.500 0.00 0.00 0.00 2.29
2876 8750 7.004555 TCCTAATAATGGTTCGCTCATACAT 57.995 36.000 0.00 0.00 0.00 2.29
2877 8751 7.450074 TCCTAATAATGGTTCGCTCATACATT 58.550 34.615 0.00 0.00 36.00 2.71
2878 8752 7.602644 TCCTAATAATGGTTCGCTCATACATTC 59.397 37.037 0.00 0.00 34.08 2.67
2879 8753 7.604164 CCTAATAATGGTTCGCTCATACATTCT 59.396 37.037 0.00 0.00 34.08 2.40
2880 8754 9.639601 CTAATAATGGTTCGCTCATACATTCTA 57.360 33.333 0.00 0.00 34.08 2.10
2881 8755 8.902540 AATAATGGTTCGCTCATACATTCTAA 57.097 30.769 0.00 0.00 34.08 2.10
2882 8756 8.902540 ATAATGGTTCGCTCATACATTCTAAA 57.097 30.769 0.00 0.00 34.08 1.85
2883 8757 7.624360 AATGGTTCGCTCATACATTCTAAAA 57.376 32.000 0.00 0.00 0.00 1.52
2884 8758 7.807977 ATGGTTCGCTCATACATTCTAAAAT 57.192 32.000 0.00 0.00 0.00 1.82
2885 8759 8.902540 ATGGTTCGCTCATACATTCTAAAATA 57.097 30.769 0.00 0.00 0.00 1.40
2886 8760 8.725405 TGGTTCGCTCATACATTCTAAAATAA 57.275 30.769 0.00 0.00 0.00 1.40
2887 8761 9.337396 TGGTTCGCTCATACATTCTAAAATAAT 57.663 29.630 0.00 0.00 0.00 1.28
2888 8762 9.599322 GGTTCGCTCATACATTCTAAAATAATG 57.401 33.333 0.00 0.00 39.68 1.90
2906 8780 6.699575 ATAATGAACATAGGTTTGACCAGC 57.300 37.500 0.00 0.00 41.95 4.85
2907 8781 3.500448 TGAACATAGGTTTGACCAGCA 57.500 42.857 0.00 0.00 41.95 4.41
2908 8782 4.032960 TGAACATAGGTTTGACCAGCAT 57.967 40.909 0.00 0.00 41.95 3.79
2909 8783 4.406456 TGAACATAGGTTTGACCAGCATT 58.594 39.130 0.00 0.00 41.95 3.56
2910 8784 4.832266 TGAACATAGGTTTGACCAGCATTT 59.168 37.500 0.00 0.00 41.95 2.32
2911 8785 5.048083 TGAACATAGGTTTGACCAGCATTTC 60.048 40.000 0.00 0.00 41.95 2.17
2912 8786 4.666512 ACATAGGTTTGACCAGCATTTCT 58.333 39.130 0.00 0.00 41.95 2.52
2913 8787 4.702131 ACATAGGTTTGACCAGCATTTCTC 59.298 41.667 0.00 0.00 41.95 2.87
2914 8788 2.154462 AGGTTTGACCAGCATTTCTCG 58.846 47.619 0.00 0.00 41.95 4.04
2915 8789 1.401539 GGTTTGACCAGCATTTCTCGC 60.402 52.381 0.00 0.00 38.42 5.03
2916 8790 0.881118 TTTGACCAGCATTTCTCGCC 59.119 50.000 0.00 0.00 0.00 5.54
2917 8791 1.298157 TTGACCAGCATTTCTCGCCG 61.298 55.000 0.00 0.00 0.00 6.46
2918 8792 1.447838 GACCAGCATTTCTCGCCGA 60.448 57.895 0.00 0.00 0.00 5.54
2919 8793 0.811616 GACCAGCATTTCTCGCCGAT 60.812 55.000 0.00 0.00 0.00 4.18
2920 8794 0.392998 ACCAGCATTTCTCGCCGATT 60.393 50.000 0.00 0.00 0.00 3.34
2921 8795 0.305922 CCAGCATTTCTCGCCGATTC 59.694 55.000 0.00 0.00 0.00 2.52
2922 8796 0.305922 CAGCATTTCTCGCCGATTCC 59.694 55.000 0.00 0.00 0.00 3.01
2923 8797 0.179000 AGCATTTCTCGCCGATTCCT 59.821 50.000 0.00 0.00 0.00 3.36
2924 8798 0.583917 GCATTTCTCGCCGATTCCTC 59.416 55.000 0.00 0.00 0.00 3.71
2925 8799 1.221414 CATTTCTCGCCGATTCCTCC 58.779 55.000 0.00 0.00 0.00 4.30
2926 8800 1.123928 ATTTCTCGCCGATTCCTCCT 58.876 50.000 0.00 0.00 0.00 3.69
2927 8801 0.902531 TTTCTCGCCGATTCCTCCTT 59.097 50.000 0.00 0.00 0.00 3.36
2928 8802 0.175760 TTCTCGCCGATTCCTCCTTG 59.824 55.000 0.00 0.00 0.00 3.61
2929 8803 0.683179 TCTCGCCGATTCCTCCTTGA 60.683 55.000 0.00 0.00 0.00 3.02
2930 8804 0.249238 CTCGCCGATTCCTCCTTGAG 60.249 60.000 0.00 0.00 0.00 3.02
2931 8805 0.683179 TCGCCGATTCCTCCTTGAGA 60.683 55.000 0.00 0.00 0.00 3.27
2932 8806 0.249238 CGCCGATTCCTCCTTGAGAG 60.249 60.000 0.00 0.00 42.83 3.20
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.770010 AATGGAGAAGCAATACTACTACTACT 57.230 34.615 0.00 0.00 0.00 2.57
3 4 8.643324 CCTTAATGGAGAAGCAATACTACTACT 58.357 37.037 0.00 0.00 38.35 2.57
39 40 3.454573 CCCACGCATGCATGGCTT 61.455 61.111 27.12 11.01 34.37 4.35
68 76 4.060900 ACTGTAGCTCGATGCCATTATTG 58.939 43.478 0.00 0.00 44.23 1.90
69 77 4.342862 ACTGTAGCTCGATGCCATTATT 57.657 40.909 0.00 0.00 44.23 1.40
70 78 5.667539 ATACTGTAGCTCGATGCCATTAT 57.332 39.130 0.00 0.00 44.23 1.28
72 80 5.667539 ATATACTGTAGCTCGATGCCATT 57.332 39.130 0.00 0.00 44.23 3.16
73 81 6.968263 ATATATACTGTAGCTCGATGCCAT 57.032 37.500 0.00 0.00 44.23 4.40
87 95 7.492994 TCAGACGTAGAGCAGCTATATATACTG 59.507 40.741 0.00 8.18 34.48 2.74
89 97 7.278203 TGTCAGACGTAGAGCAGCTATATATAC 59.722 40.741 0.00 0.00 0.00 1.47
90 98 7.328737 TGTCAGACGTAGAGCAGCTATATATA 58.671 38.462 0.00 0.00 0.00 0.86
91 99 6.174049 TGTCAGACGTAGAGCAGCTATATAT 58.826 40.000 0.00 0.00 0.00 0.86
104 113 7.796838 TCATTTGATTTTCTTGTCAGACGTAG 58.203 34.615 0.00 0.00 0.00 3.51
108 117 9.467258 TCAATTCATTTGATTTTCTTGTCAGAC 57.533 29.630 0.00 0.00 39.44 3.51
110 119 8.433126 GCTCAATTCATTTGATTTTCTTGTCAG 58.567 33.333 0.00 0.00 43.30 3.51
111 120 8.145767 AGCTCAATTCATTTGATTTTCTTGTCA 58.854 29.630 0.00 0.00 43.30 3.58
128 140 6.429078 TGCATCCATCTATGTTAGCTCAATTC 59.571 38.462 0.00 0.00 0.00 2.17
151 167 9.923143 TTATATATGGAGTACTGTATGTTGTGC 57.077 33.333 0.00 0.00 0.00 4.57
184 374 3.294493 GCTGCCGGCCAAGAAACA 61.294 61.111 26.77 0.19 34.27 2.83
185 375 3.294493 TGCTGCCGGCCAAGAAAC 61.294 61.111 26.77 5.70 40.92 2.78
287 489 4.917415 CAGTTTCTTTGGTAAATTCAGCGG 59.083 41.667 0.00 0.00 0.00 5.52
288 490 5.519722 ACAGTTTCTTTGGTAAATTCAGCG 58.480 37.500 0.00 0.00 0.00 5.18
289 491 6.292328 GCAACAGTTTCTTTGGTAAATTCAGC 60.292 38.462 0.00 0.00 0.00 4.26
290 492 6.200854 GGCAACAGTTTCTTTGGTAAATTCAG 59.799 38.462 0.00 0.00 0.00 3.02
291 493 6.045955 GGCAACAGTTTCTTTGGTAAATTCA 58.954 36.000 0.00 0.00 0.00 2.57
293 495 5.983540 TGGCAACAGTTTCTTTGGTAAATT 58.016 33.333 0.00 0.00 46.17 1.82
317 523 5.666969 CATGCATGCATATTCCCAAAAAG 57.333 39.130 31.73 11.91 34.91 2.27
332 538 1.197036 CGCTGATTAGAGGCATGCATG 59.803 52.381 22.70 22.70 0.00 4.06
333 539 1.520494 CGCTGATTAGAGGCATGCAT 58.480 50.000 21.36 13.78 0.00 3.96
334 540 0.533531 CCGCTGATTAGAGGCATGCA 60.534 55.000 21.36 0.00 37.07 3.96
335 541 0.250038 TCCGCTGATTAGAGGCATGC 60.250 55.000 9.90 9.90 42.95 4.06
336 542 2.141517 CTTCCGCTGATTAGAGGCATG 58.858 52.381 2.08 0.00 42.95 4.06
337 543 1.765314 ACTTCCGCTGATTAGAGGCAT 59.235 47.619 2.08 0.00 42.95 4.40
338 544 1.195115 ACTTCCGCTGATTAGAGGCA 58.805 50.000 2.08 0.00 42.95 4.75
339 545 2.745102 GTACTTCCGCTGATTAGAGGC 58.255 52.381 2.08 0.00 42.95 4.70
340 546 2.358267 ACGTACTTCCGCTGATTAGAGG 59.642 50.000 0.36 0.36 44.43 3.69
341 547 3.619729 GACGTACTTCCGCTGATTAGAG 58.380 50.000 0.00 0.00 0.00 2.43
342 548 2.031314 CGACGTACTTCCGCTGATTAGA 59.969 50.000 0.00 0.00 0.00 2.10
343 549 2.373269 CGACGTACTTCCGCTGATTAG 58.627 52.381 0.00 0.00 0.00 1.73
344 550 1.532505 GCGACGTACTTCCGCTGATTA 60.533 52.381 10.88 0.00 44.83 1.75
345 551 0.801067 GCGACGTACTTCCGCTGATT 60.801 55.000 10.88 0.00 44.83 2.57
346 552 1.226603 GCGACGTACTTCCGCTGAT 60.227 57.895 10.88 0.00 44.83 2.90
347 553 2.177531 GCGACGTACTTCCGCTGA 59.822 61.111 10.88 0.00 44.83 4.26
360 566 4.477975 CTCGTCCTCACCGGCGAC 62.478 72.222 9.30 0.91 36.74 5.19
363 569 4.500116 GAGCTCGTCCTCACCGGC 62.500 72.222 0.00 0.00 0.00 6.13
364 570 3.827898 GGAGCTCGTCCTCACCGG 61.828 72.222 7.83 0.00 42.99 5.28
365 571 4.180946 CGGAGCTCGTCCTCACCG 62.181 72.222 7.83 0.00 44.35 4.94
366 572 3.827898 CCGGAGCTCGTCCTCACC 61.828 72.222 7.83 0.00 44.35 4.02
367 573 3.063084 ACCGGAGCTCGTCCTCAC 61.063 66.667 9.46 0.00 44.35 3.51
368 574 2.838748 ATCACCGGAGCTCGTCCTCA 62.839 60.000 9.46 0.00 44.35 3.86
369 575 2.122167 ATCACCGGAGCTCGTCCTC 61.122 63.158 9.46 0.00 44.35 3.71
370 576 2.043852 ATCACCGGAGCTCGTCCT 60.044 61.111 9.46 0.00 44.35 3.85
371 577 2.105128 CATCACCGGAGCTCGTCC 59.895 66.667 9.46 0.00 42.85 4.79
372 578 2.105128 CCATCACCGGAGCTCGTC 59.895 66.667 9.46 0.00 37.11 4.20
373 579 3.461773 CCCATCACCGGAGCTCGT 61.462 66.667 9.46 0.00 37.11 4.18
374 580 2.238847 TTTCCCATCACCGGAGCTCG 62.239 60.000 9.46 3.03 38.88 5.03
375 581 0.744771 GTTTCCCATCACCGGAGCTC 60.745 60.000 9.46 4.71 0.00 4.09
376 582 1.299976 GTTTCCCATCACCGGAGCT 59.700 57.895 9.46 0.00 0.00 4.09
377 583 2.106683 CGTTTCCCATCACCGGAGC 61.107 63.158 9.46 0.00 0.00 4.70
378 584 1.449601 CCGTTTCCCATCACCGGAG 60.450 63.158 9.46 0.00 41.08 4.63
379 585 2.666207 CCGTTTCCCATCACCGGA 59.334 61.111 9.46 0.00 41.08 5.14
380 586 2.437716 CCCGTTTCCCATCACCGG 60.438 66.667 0.00 0.00 38.39 5.28
381 587 3.131478 GCCCGTTTCCCATCACCG 61.131 66.667 0.00 0.00 0.00 4.94
382 588 3.131478 CGCCCGTTTCCCATCACC 61.131 66.667 0.00 0.00 0.00 4.02
383 589 2.046700 TCGCCCGTTTCCCATCAC 60.047 61.111 0.00 0.00 0.00 3.06
384 590 2.238847 CTCTCGCCCGTTTCCCATCA 62.239 60.000 0.00 0.00 0.00 3.07
385 591 1.521681 CTCTCGCCCGTTTCCCATC 60.522 63.158 0.00 0.00 0.00 3.51
386 592 2.584608 CTCTCGCCCGTTTCCCAT 59.415 61.111 0.00 0.00 0.00 4.00
387 593 3.702048 CCTCTCGCCCGTTTCCCA 61.702 66.667 0.00 0.00 0.00 4.37
388 594 2.854187 CTTCCTCTCGCCCGTTTCCC 62.854 65.000 0.00 0.00 0.00 3.97
389 595 1.448013 CTTCCTCTCGCCCGTTTCC 60.448 63.158 0.00 0.00 0.00 3.13
390 596 0.037605 TTCTTCCTCTCGCCCGTTTC 60.038 55.000 0.00 0.00 0.00 2.78
391 597 0.037232 CTTCTTCCTCTCGCCCGTTT 60.037 55.000 0.00 0.00 0.00 3.60
392 598 0.898789 TCTTCTTCCTCTCGCCCGTT 60.899 55.000 0.00 0.00 0.00 4.44
393 599 1.304217 TCTTCTTCCTCTCGCCCGT 60.304 57.895 0.00 0.00 0.00 5.28
394 600 1.032657 TCTCTTCTTCCTCTCGCCCG 61.033 60.000 0.00 0.00 0.00 6.13
395 601 0.744281 CTCTCTTCTTCCTCTCGCCC 59.256 60.000 0.00 0.00 0.00 6.13
396 602 1.676006 CTCTCTCTTCTTCCTCTCGCC 59.324 57.143 0.00 0.00 0.00 5.54
397 603 1.065551 GCTCTCTCTTCTTCCTCTCGC 59.934 57.143 0.00 0.00 0.00 5.03
398 604 2.355756 CTGCTCTCTCTTCTTCCTCTCG 59.644 54.545 0.00 0.00 0.00 4.04
399 605 2.689983 CCTGCTCTCTCTTCTTCCTCTC 59.310 54.545 0.00 0.00 0.00 3.20
400 606 2.738743 CCTGCTCTCTCTTCTTCCTCT 58.261 52.381 0.00 0.00 0.00 3.69
401 607 1.136891 GCCTGCTCTCTCTTCTTCCTC 59.863 57.143 0.00 0.00 0.00 3.71
402 608 1.194218 GCCTGCTCTCTCTTCTTCCT 58.806 55.000 0.00 0.00 0.00 3.36
403 609 1.194218 AGCCTGCTCTCTCTTCTTCC 58.806 55.000 0.00 0.00 0.00 3.46
404 610 2.362077 CCTAGCCTGCTCTCTCTTCTTC 59.638 54.545 0.00 0.00 0.00 2.87
405 611 2.387757 CCTAGCCTGCTCTCTCTTCTT 58.612 52.381 0.00 0.00 0.00 2.52
406 612 2.028996 GCCTAGCCTGCTCTCTCTTCT 61.029 57.143 0.00 0.00 0.00 2.85
407 613 0.389025 GCCTAGCCTGCTCTCTCTTC 59.611 60.000 0.00 0.00 0.00 2.87
408 614 0.325110 TGCCTAGCCTGCTCTCTCTT 60.325 55.000 0.00 0.00 0.00 2.85
409 615 0.756442 CTGCCTAGCCTGCTCTCTCT 60.756 60.000 0.00 0.00 0.00 3.10
410 616 1.741525 CTGCCTAGCCTGCTCTCTC 59.258 63.158 0.00 0.00 0.00 3.20
411 617 2.433994 GCTGCCTAGCCTGCTCTCT 61.434 63.158 0.00 0.00 44.33 3.10
412 618 2.108771 GCTGCCTAGCCTGCTCTC 59.891 66.667 0.00 0.00 44.33 3.20
421 627 1.377725 CAACACCCCAGCTGCCTAG 60.378 63.158 8.66 0.23 0.00 3.02
422 628 1.422977 TTCAACACCCCAGCTGCCTA 61.423 55.000 8.66 0.00 0.00 3.93
423 629 2.703675 CTTCAACACCCCAGCTGCCT 62.704 60.000 8.66 0.00 0.00 4.75
424 630 2.203480 TTCAACACCCCAGCTGCC 60.203 61.111 8.66 0.00 0.00 4.85
425 631 1.228245 TCTTCAACACCCCAGCTGC 60.228 57.895 8.66 0.00 0.00 5.25
426 632 0.890996 GGTCTTCAACACCCCAGCTG 60.891 60.000 6.78 6.78 0.00 4.24
427 633 1.352622 TGGTCTTCAACACCCCAGCT 61.353 55.000 0.00 0.00 32.24 4.24
428 634 0.890996 CTGGTCTTCAACACCCCAGC 60.891 60.000 0.00 0.00 36.58 4.85
429 635 0.474184 ACTGGTCTTCAACACCCCAG 59.526 55.000 0.00 0.00 46.48 4.45
430 636 0.472471 GACTGGTCTTCAACACCCCA 59.528 55.000 0.00 0.00 32.24 4.96
431 637 0.765510 AGACTGGTCTTCAACACCCC 59.234 55.000 0.00 0.00 36.31 4.95
432 638 1.694696 AGAGACTGGTCTTCAACACCC 59.305 52.381 4.67 0.00 40.61 4.61
469 675 5.132648 AGGTGAGGTCCATTTATCAATGCTA 59.867 40.000 0.00 0.00 38.88 3.49
494 700 7.428826 CATGAAAGAAAGGGTTTATGATAGCC 58.571 38.462 0.00 0.00 0.00 3.93
519 726 5.073311 TCACACTCTAGAACATACCTTGC 57.927 43.478 0.00 0.00 0.00 4.01
520 727 8.446273 CAAAATCACACTCTAGAACATACCTTG 58.554 37.037 0.00 0.00 0.00 3.61
544 751 3.159213 AGCACCCAATCACAGAATCAA 57.841 42.857 0.00 0.00 0.00 2.57
549 756 0.684535 TCGAAGCACCCAATCACAGA 59.315 50.000 0.00 0.00 0.00 3.41
631 852 8.509690 CCACCGATCTAGTACGAATTAGATAAA 58.490 37.037 11.43 0.00 35.45 1.40
632 853 7.663081 ACCACCGATCTAGTACGAATTAGATAA 59.337 37.037 11.43 0.00 35.45 1.75
637 858 6.455360 AAACCACCGATCTAGTACGAATTA 57.545 37.500 11.43 0.00 0.00 1.40
638 859 4.996788 AACCACCGATCTAGTACGAATT 57.003 40.909 11.43 0.00 0.00 2.17
640 861 5.734220 GCATAAACCACCGATCTAGTACGAA 60.734 44.000 11.43 0.00 0.00 3.85
641 862 4.261322 GCATAAACCACCGATCTAGTACGA 60.261 45.833 11.43 0.00 0.00 3.43
642 863 3.979495 GCATAAACCACCGATCTAGTACG 59.021 47.826 0.00 0.00 0.00 3.67
643 864 4.940463 TGCATAAACCACCGATCTAGTAC 58.060 43.478 0.00 0.00 0.00 2.73
644 865 5.601583 TTGCATAAACCACCGATCTAGTA 57.398 39.130 0.00 0.00 0.00 1.82
646 867 5.156804 GTTTGCATAAACCACCGATCTAG 57.843 43.478 0.00 0.00 40.19 2.43
661 882 3.456380 AACCATGGACTAGGTTTGCAT 57.544 42.857 21.47 0.00 45.46 3.96
744 3460 4.521146 GGCTTGGATCCGATCATATCATT 58.479 43.478 7.39 0.00 0.00 2.57
795 3516 2.998480 TTAGGGTTGCTCGGCCGA 60.998 61.111 29.03 29.03 0.00 5.54
797 3518 2.437895 GGTTAGGGTTGCTCGGCC 60.438 66.667 0.00 0.00 0.00 6.13
798 3519 2.818274 CGGTTAGGGTTGCTCGGC 60.818 66.667 0.00 0.00 0.00 5.54
799 3520 2.818274 GCGGTTAGGGTTGCTCGG 60.818 66.667 0.00 0.00 0.00 4.63
801 3522 0.891904 TTTGGCGGTTAGGGTTGCTC 60.892 55.000 0.00 0.00 0.00 4.26
823 3545 4.704103 AGCTGGGAGGCCGTCTCA 62.704 66.667 1.71 0.24 44.19 3.27
826 3548 4.459089 GTGAGCTGGGAGGCCGTC 62.459 72.222 0.00 0.00 0.00 4.79
897 3639 1.117994 TTGCATTGCAGGTGGTTTCA 58.882 45.000 11.76 0.00 40.61 2.69
942 3684 2.192187 GGCAGGAATGGCAGCTAGC 61.192 63.158 6.62 6.62 44.65 3.42
943 3685 1.890979 CGGCAGGAATGGCAGCTAG 60.891 63.158 0.00 0.00 0.00 3.42
1018 3760 0.249615 GGGCCGTCGACCTTATTACC 60.250 60.000 10.58 1.00 0.00 2.85
1019 3761 0.595825 CGGGCCGTCGACCTTATTAC 60.596 60.000 19.97 0.00 0.00 1.89
1126 3883 3.945304 CTGGCCGTCCACCGTTACC 62.945 68.421 0.00 0.00 37.47 2.85
1127 3884 2.433664 CTGGCCGTCCACCGTTAC 60.434 66.667 0.00 0.00 37.47 2.50
1350 4107 4.758251 TGCCGCGACATGAGGTGG 62.758 66.667 8.23 13.60 40.18 4.61
1632 4395 0.518636 CGTTGCAGAACATGGTCCAG 59.481 55.000 7.26 1.31 31.78 3.86
1803 4572 2.184322 CGCATGTACGCCACCTCT 59.816 61.111 0.00 0.00 0.00 3.69
1952 4721 1.133792 CCACCGGCCATCTCCTAAATT 60.134 52.381 0.00 0.00 0.00 1.82
1953 4722 0.474184 CCACCGGCCATCTCCTAAAT 59.526 55.000 0.00 0.00 0.00 1.40
1954 4723 0.619255 TCCACCGGCCATCTCCTAAA 60.619 55.000 0.00 0.00 0.00 1.85
1955 4724 0.619255 TTCCACCGGCCATCTCCTAA 60.619 55.000 0.00 0.00 0.00 2.69
1956 4725 1.002403 TTCCACCGGCCATCTCCTA 59.998 57.895 0.00 0.00 0.00 2.94
1966 4735 1.447838 CGATGACACCTTCCACCGG 60.448 63.158 0.00 0.00 0.00 5.28
1976 4745 0.806102 CCGACCATCACCGATGACAC 60.806 60.000 5.54 0.00 42.09 3.67
1980 4755 1.521457 CACCCGACCATCACCGATG 60.521 63.158 0.00 0.00 39.52 3.84
1998 4773 0.607489 CCTACATGCATAGCAGGGCC 60.607 60.000 8.55 0.00 45.01 5.80
2009 4784 0.916809 ACCCCTACAACCCTACATGC 59.083 55.000 0.00 0.00 0.00 4.06
2010 4785 1.913419 ACACCCCTACAACCCTACATG 59.087 52.381 0.00 0.00 0.00 3.21
2011 4786 1.913419 CACACCCCTACAACCCTACAT 59.087 52.381 0.00 0.00 0.00 2.29
2014 4789 1.433985 TCTCACACCCCTACAACCCTA 59.566 52.381 0.00 0.00 0.00 3.53
2016 4791 0.613777 CTCTCACACCCCTACAACCC 59.386 60.000 0.00 0.00 0.00 4.11
2019 4794 2.176889 GTAGCTCTCACACCCCTACAA 58.823 52.381 0.00 0.00 0.00 2.41
2024 4799 3.310652 GGGTAGCTCTCACACCCC 58.689 66.667 10.19 0.00 45.34 4.95
2026 4801 0.537653 GGAAGGGTAGCTCTCACACC 59.462 60.000 0.00 0.00 0.00 4.16
2027 4802 1.478916 GAGGAAGGGTAGCTCTCACAC 59.521 57.143 0.00 0.00 0.00 3.82
2028 4803 1.077169 TGAGGAAGGGTAGCTCTCACA 59.923 52.381 0.00 0.00 30.58 3.58
2029 4804 1.853963 TGAGGAAGGGTAGCTCTCAC 58.146 55.000 0.00 0.00 30.58 3.51
2030 4805 2.623418 TTGAGGAAGGGTAGCTCTCA 57.377 50.000 0.00 0.00 33.30 3.27
2031 4806 3.983044 TTTTGAGGAAGGGTAGCTCTC 57.017 47.619 0.00 0.00 0.00 3.20
2032 4807 3.623453 GCATTTTGAGGAAGGGTAGCTCT 60.623 47.826 0.00 0.00 0.00 4.09
2033 4808 2.685388 GCATTTTGAGGAAGGGTAGCTC 59.315 50.000 0.00 0.00 0.00 4.09
2034 4809 2.041620 TGCATTTTGAGGAAGGGTAGCT 59.958 45.455 0.00 0.00 0.00 3.32
2035 4810 2.446435 TGCATTTTGAGGAAGGGTAGC 58.554 47.619 0.00 0.00 0.00 3.58
2036 4811 5.413499 CATTTGCATTTTGAGGAAGGGTAG 58.587 41.667 0.00 0.00 0.00 3.18
2037 4812 4.322650 GCATTTGCATTTTGAGGAAGGGTA 60.323 41.667 0.00 0.00 41.59 3.69
2038 4813 3.557686 GCATTTGCATTTTGAGGAAGGGT 60.558 43.478 0.00 0.00 41.59 4.34
2039 4814 3.004862 GCATTTGCATTTTGAGGAAGGG 58.995 45.455 0.00 0.00 41.59 3.95
2040 4815 3.930848 GAGCATTTGCATTTTGAGGAAGG 59.069 43.478 5.20 0.00 45.16 3.46
2041 4816 4.562082 TGAGCATTTGCATTTTGAGGAAG 58.438 39.130 5.20 0.00 45.16 3.46
2042 4817 4.603989 TGAGCATTTGCATTTTGAGGAA 57.396 36.364 5.20 0.00 45.16 3.36
2043 4818 4.500127 CATGAGCATTTGCATTTTGAGGA 58.500 39.130 5.20 0.00 45.16 3.71
2044 4819 3.063452 GCATGAGCATTTGCATTTTGAGG 59.937 43.478 5.20 0.00 45.16 3.86
2045 4820 3.932710 AGCATGAGCATTTGCATTTTGAG 59.067 39.130 5.20 0.00 45.49 3.02
2046 4821 3.932822 AGCATGAGCATTTGCATTTTGA 58.067 36.364 5.20 0.00 45.49 2.69
2047 4822 4.678509 AAGCATGAGCATTTGCATTTTG 57.321 36.364 5.20 0.00 45.49 2.44
2048 4823 5.484715 ACTAAGCATGAGCATTTGCATTTT 58.515 33.333 5.20 0.00 45.49 1.82
2049 4824 5.080969 ACTAAGCATGAGCATTTGCATTT 57.919 34.783 5.20 0.00 45.49 2.32
2050 4825 4.730949 ACTAAGCATGAGCATTTGCATT 57.269 36.364 5.20 2.62 45.49 3.56
2118 4894 4.337274 CCATATATACATGGGCAGTGCATG 59.663 45.833 18.61 15.15 41.63 4.06
2119 4895 4.529897 CCATATATACATGGGCAGTGCAT 58.470 43.478 18.61 2.85 41.63 3.96
2120 4896 3.954200 CCATATATACATGGGCAGTGCA 58.046 45.455 18.61 0.00 41.63 4.57
2166 4949 2.017623 GCTGATGGCATCTTGCTGAGT 61.018 52.381 26.49 0.00 44.28 3.41
2251 5074 6.059484 TGTAGTTGAGGTGGGTTTTAAGAAG 58.941 40.000 0.00 0.00 0.00 2.85
2285 5114 9.482627 AAAATTATAGTATCTTGAAGCCTCTCG 57.517 33.333 0.00 0.00 0.00 4.04
2309 5138 4.142315 GCCAGAGCTGCAATTCTCAATAAA 60.142 41.667 1.02 0.00 35.50 1.40
2317 5146 0.679002 TCCTGCCAGAGCTGCAATTC 60.679 55.000 1.02 0.00 38.46 2.17
2365 5194 7.951347 ATATTTGTTCCTGAATTTGCTCTCT 57.049 32.000 0.00 0.00 0.00 3.10
2432 8306 9.868277 TTAGCCCATCTAATTAATGTTGTTTTG 57.132 29.630 0.00 0.00 32.57 2.44
2445 8319 4.469657 TCGCCAAAATTAGCCCATCTAAT 58.530 39.130 0.00 0.00 46.97 1.73
2495 8369 2.528743 CGCATCCTGCCTAGTTGCG 61.529 63.158 1.01 1.01 43.39 4.85
2509 8383 0.749649 GAGAGTCAGATGTCCCGCAT 59.250 55.000 0.00 0.00 41.24 4.73
2609 8483 2.619849 CCCAGCTTGAAGATCATGGTGT 60.620 50.000 18.16 0.00 43.87 4.16
2664 8538 0.844661 TTGGGTAGTGGAGGGCATGT 60.845 55.000 0.00 0.00 0.00 3.21
2682 8556 3.876589 AACGTCGATGGCGTGCCTT 62.877 57.895 12.84 5.62 42.10 4.35
2684 8558 4.147322 CAACGTCGATGGCGTGCC 62.147 66.667 9.90 3.30 42.10 5.01
2686 8560 2.469847 CACAACGTCGATGGCGTG 59.530 61.111 9.90 11.43 42.10 5.34
2689 8563 3.047280 TGGCACAACGTCGATGGC 61.047 61.111 9.90 6.07 39.26 4.40
2774 8648 2.455674 TCCACAATCTGAAGTCCACG 57.544 50.000 0.00 0.00 0.00 4.94
2816 8690 3.259123 GGTTCTTCATCAAGCAAACCCAT 59.741 43.478 0.00 0.00 33.28 4.00
2817 8691 2.627699 GGTTCTTCATCAAGCAAACCCA 59.372 45.455 0.00 0.00 33.28 4.51
2818 8692 2.627699 TGGTTCTTCATCAAGCAAACCC 59.372 45.455 0.00 0.00 36.37 4.11
2819 8693 4.320608 TTGGTTCTTCATCAAGCAAACC 57.679 40.909 0.00 0.00 38.08 3.27
2820 8694 5.632347 CAGATTGGTTCTTCATCAAGCAAAC 59.368 40.000 1.57 0.00 42.73 2.93
2821 8695 5.535783 TCAGATTGGTTCTTCATCAAGCAAA 59.464 36.000 1.57 0.00 42.73 3.68
2822 8696 5.072055 TCAGATTGGTTCTTCATCAAGCAA 58.928 37.500 0.01 0.01 43.40 3.91
2823 8697 4.654915 TCAGATTGGTTCTTCATCAAGCA 58.345 39.130 0.00 0.00 29.93 3.91
2824 8698 4.699257 ACTCAGATTGGTTCTTCATCAAGC 59.301 41.667 0.00 0.00 29.93 4.01
2825 8699 6.814506 AACTCAGATTGGTTCTTCATCAAG 57.185 37.500 0.00 0.00 29.93 3.02
2826 8700 6.655003 GGTAACTCAGATTGGTTCTTCATCAA 59.345 38.462 0.00 0.00 29.93 2.57
2827 8701 6.173339 GGTAACTCAGATTGGTTCTTCATCA 58.827 40.000 0.00 0.00 29.93 3.07
2828 8702 6.670077 GGTAACTCAGATTGGTTCTTCATC 57.330 41.667 0.00 0.00 29.93 2.92
2846 8720 5.608449 AGCGAACCATTATTAGGAGGTAAC 58.392 41.667 0.00 0.00 33.15 2.50
2847 8721 5.364446 TGAGCGAACCATTATTAGGAGGTAA 59.636 40.000 0.00 0.00 33.15 2.85
2848 8722 4.897076 TGAGCGAACCATTATTAGGAGGTA 59.103 41.667 0.00 0.00 33.15 3.08
2849 8723 3.709653 TGAGCGAACCATTATTAGGAGGT 59.290 43.478 0.00 0.00 35.47 3.85
2850 8724 4.336889 TGAGCGAACCATTATTAGGAGG 57.663 45.455 0.00 0.00 0.00 4.30
2851 8725 6.455647 TGTATGAGCGAACCATTATTAGGAG 58.544 40.000 0.00 0.00 0.00 3.69
2852 8726 6.413783 TGTATGAGCGAACCATTATTAGGA 57.586 37.500 0.00 0.00 0.00 2.94
2853 8727 7.604164 AGAATGTATGAGCGAACCATTATTAGG 59.396 37.037 0.00 0.00 0.00 2.69
2854 8728 8.539770 AGAATGTATGAGCGAACCATTATTAG 57.460 34.615 0.00 0.00 0.00 1.73
2855 8729 9.990360 TTAGAATGTATGAGCGAACCATTATTA 57.010 29.630 0.00 0.00 0.00 0.98
2856 8730 8.902540 TTAGAATGTATGAGCGAACCATTATT 57.097 30.769 0.00 0.00 0.00 1.40
2857 8731 8.902540 TTTAGAATGTATGAGCGAACCATTAT 57.097 30.769 0.00 0.00 0.00 1.28
2858 8732 8.725405 TTTTAGAATGTATGAGCGAACCATTA 57.275 30.769 0.00 0.00 0.00 1.90
2859 8733 7.624360 TTTTAGAATGTATGAGCGAACCATT 57.376 32.000 0.00 0.00 0.00 3.16
2860 8734 7.807977 ATTTTAGAATGTATGAGCGAACCAT 57.192 32.000 0.00 0.00 0.00 3.55
2861 8735 8.725405 TTATTTTAGAATGTATGAGCGAACCA 57.275 30.769 0.00 0.00 0.00 3.67
2862 8736 9.599322 CATTATTTTAGAATGTATGAGCGAACC 57.401 33.333 0.00 0.00 31.00 3.62
2880 8754 8.034804 GCTGGTCAAACCTATGTTCATTATTTT 58.965 33.333 0.00 0.00 39.58 1.82
2881 8755 7.178274 TGCTGGTCAAACCTATGTTCATTATTT 59.822 33.333 0.00 0.00 39.58 1.40
2882 8756 6.663093 TGCTGGTCAAACCTATGTTCATTATT 59.337 34.615 0.00 0.00 39.58 1.40
2883 8757 6.186957 TGCTGGTCAAACCTATGTTCATTAT 58.813 36.000 0.00 0.00 39.58 1.28
2884 8758 5.565509 TGCTGGTCAAACCTATGTTCATTA 58.434 37.500 0.00 0.00 39.58 1.90
2885 8759 4.406456 TGCTGGTCAAACCTATGTTCATT 58.594 39.130 0.00 0.00 39.58 2.57
2886 8760 4.032960 TGCTGGTCAAACCTATGTTCAT 57.967 40.909 0.00 0.00 39.58 2.57
2887 8761 3.500448 TGCTGGTCAAACCTATGTTCA 57.500 42.857 0.00 0.00 39.58 3.18
2888 8762 5.183904 AGAAATGCTGGTCAAACCTATGTTC 59.816 40.000 0.00 0.00 39.58 3.18
2889 8763 5.079643 AGAAATGCTGGTCAAACCTATGTT 58.920 37.500 0.00 0.00 39.58 2.71
2890 8764 4.666512 AGAAATGCTGGTCAAACCTATGT 58.333 39.130 0.00 0.00 39.58 2.29
2891 8765 4.201851 CGAGAAATGCTGGTCAAACCTATG 60.202 45.833 0.00 0.00 39.58 2.23
2892 8766 3.941483 CGAGAAATGCTGGTCAAACCTAT 59.059 43.478 0.00 0.00 39.58 2.57
2893 8767 3.334691 CGAGAAATGCTGGTCAAACCTA 58.665 45.455 0.00 0.00 39.58 3.08
2894 8768 2.154462 CGAGAAATGCTGGTCAAACCT 58.846 47.619 0.00 0.00 39.58 3.50
2895 8769 1.401539 GCGAGAAATGCTGGTCAAACC 60.402 52.381 0.00 0.00 39.22 3.27
2896 8770 1.401539 GGCGAGAAATGCTGGTCAAAC 60.402 52.381 0.00 0.00 0.00 2.93
2897 8771 0.881118 GGCGAGAAATGCTGGTCAAA 59.119 50.000 0.00 0.00 0.00 2.69
2898 8772 1.298157 CGGCGAGAAATGCTGGTCAA 61.298 55.000 0.00 0.00 35.04 3.18
2899 8773 1.741401 CGGCGAGAAATGCTGGTCA 60.741 57.895 0.00 0.00 35.04 4.02
2900 8774 0.811616 ATCGGCGAGAAATGCTGGTC 60.812 55.000 17.22 0.00 39.23 4.02
2901 8775 0.392998 AATCGGCGAGAAATGCTGGT 60.393 50.000 17.22 0.00 39.23 4.00
2902 8776 0.305922 GAATCGGCGAGAAATGCTGG 59.694 55.000 17.22 0.00 39.23 4.85
2903 8777 0.305922 GGAATCGGCGAGAAATGCTG 59.694 55.000 17.22 0.00 40.13 4.41
2904 8778 0.179000 AGGAATCGGCGAGAAATGCT 59.821 50.000 17.22 9.24 0.00 3.79
2905 8779 0.583917 GAGGAATCGGCGAGAAATGC 59.416 55.000 17.22 6.95 0.00 3.56
2906 8780 1.202580 AGGAGGAATCGGCGAGAAATG 60.203 52.381 17.22 0.00 0.00 2.32
2907 8781 1.123928 AGGAGGAATCGGCGAGAAAT 58.876 50.000 17.22 0.87 0.00 2.17
2908 8782 0.902531 AAGGAGGAATCGGCGAGAAA 59.097 50.000 17.22 0.00 0.00 2.52
2909 8783 0.175760 CAAGGAGGAATCGGCGAGAA 59.824 55.000 17.22 0.00 0.00 2.87
2910 8784 0.683179 TCAAGGAGGAATCGGCGAGA 60.683 55.000 17.22 0.01 0.00 4.04
2911 8785 0.249238 CTCAAGGAGGAATCGGCGAG 60.249 60.000 17.22 0.00 0.00 5.03
2912 8786 0.683179 TCTCAAGGAGGAATCGGCGA 60.683 55.000 13.87 13.87 0.00 5.54
2913 8787 0.249238 CTCTCAAGGAGGAATCGGCG 60.249 60.000 0.00 0.00 38.35 6.46
2914 8788 3.677002 CTCTCAAGGAGGAATCGGC 57.323 57.895 0.00 0.00 38.35 5.54


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.