AutoCloner

Multiple sequence alignment - TraesCS7A01G569800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7A01G569800	chr7A	100.000	4959	0	0	1	4959	736572496	736567538	0.000000e+00	9158
1	TraesCS7A01G569800	chr7A	82.530	498	82	5	4457	4954	403890993	403891485	2.740000e-117	433
2	TraesCS7A01G569800	chr7A	82.791	215	31	5	1057	1268	736526258	736526047	2.360000e-43	187
3	TraesCS7A01G569800	chr7D	96.557	4444	125	9	1	4433	631757916	631762342	0.000000e+00	7334
4	TraesCS7A01G569800	chr7D	96.627	504	17	0	4456	4959	631787802	631788305	0.000000e+00	837
5	TraesCS7A01G569800	chr7D	82.409	631	89	13	4340	4954	365788645	365789269	9.450000e-147	531
6	TraesCS7A01G569800	chr7D	82.731	249	28	10	1883	2119	631848058	631848303	1.810000e-49	207
7	TraesCS7A01G569800	chr2D	82.020	901	123	28	4092	4959	115933029	115932135	0.000000e+00	730
8	TraesCS7A01G569800	chr2D	81.641	463	75	7	2822	3278	579758001	579757543	4.690000e-100	375
9	TraesCS7A01G569800	chr2D	87.745	204	25	0	4756	4959	584893306	584893103	6.420000e-59	239
10	TraesCS7A01G569800	chr2A	81.271	897	126	27	4098	4959	117367037	117366148	0.000000e+00	688
11	TraesCS7A01G569800	chr7B	80.577	901	124	34	4092	4959	490734124	490733242	0.000000e+00	647
12	TraesCS7A01G569800	chr7B	80.552	869	139	20	4105	4954	320330620	320329763	4.190000e-180	641
13	TraesCS7A01G569800	chrUn	78.333	900	131	35	4099	4959	9628166	9629040	1.580000e-144	523
14	TraesCS7A01G569800	chrUn	78.333	900	131	35	4099	4959	305336925	305336051	1.580000e-144	523
15	TraesCS7A01G569800	chrUn	78.333	900	131	35	4099	4959	320417717	320418591	1.580000e-144	523
16	TraesCS7A01G569800	chr1D	80.521	652	98	20	4098	4730	62208841	62208200	1.620000e-129	473
17	TraesCS7A01G569800	chr1D	87.019	208	24	3	4754	4959	380582549	380582343	1.070000e-56	231
18	TraesCS7A01G569800	chr5B	76.879	878	148	37	4092	4926	390411128	390410263	3.520000e-121	446
19	TraesCS7A01G569800	chr5B	76.792	879	148	38	4092	4926	390277149	390276283	4.560000e-120	442
20	TraesCS7A01G569800	chr2B	81.385	462	81	3	2822	3278	697708370	697707909	6.060000e-99	372
21	TraesCS7A01G569800	chr2B	79.344	518	85	17	4457	4959	166419063	166418553	1.320000e-90	344
22	TraesCS7A01G569800	chr3A	79.070	559	90	17	4097	4638	549614399	549613851	4.720000e-95	359
23	TraesCS7A01G569800	chr3A	87.940	199	21	3	4757	4954	532312295	532312099	1.070000e-56	231
24	TraesCS7A01G569800	chr1B	87.745	204	24	1	4757	4959	305296438	305296235	2.310000e-58	237
25	TraesCS7A01G569800	chr3D	86.765	204	25	2	4757	4959	418869700	418869902	4.990000e-55	226

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7A01G569800	chr7A	736567538	736572496	4958	True	9158	9158	100.000	1	4959	1	chr7A.!!$R2	4958
1	TraesCS7A01G569800	chr7D	631757916	631762342	4426	False	7334	7334	96.557	1	4433	1	chr7D.!!$F2	4432
2	TraesCS7A01G569800	chr7D	631787802	631788305	503	False	837	837	96.627	4456	4959	1	chr7D.!!$F3	503
3	TraesCS7A01G569800	chr7D	365788645	365789269	624	False	531	531	82.409	4340	4954	1	chr7D.!!$F1	614
4	TraesCS7A01G569800	chr2D	115932135	115933029	894	True	730	730	82.020	4092	4959	1	chr2D.!!$R1	867
5	TraesCS7A01G569800	chr2A	117366148	117367037	889	True	688	688	81.271	4098	4959	1	chr2A.!!$R1	861
6	TraesCS7A01G569800	chr7B	490733242	490734124	882	True	647	647	80.577	4092	4959	1	chr7B.!!$R2	867
7	TraesCS7A01G569800	chr7B	320329763	320330620	857	True	641	641	80.552	4105	4954	1	chr7B.!!$R1	849
8	TraesCS7A01G569800	chrUn	9628166	9629040	874	False	523	523	78.333	4099	4959	1	chrUn.!!$F1	860
9	TraesCS7A01G569800	chrUn	305336051	305336925	874	True	523	523	78.333	4099	4959	1	chrUn.!!$R1	860
10	TraesCS7A01G569800	chrUn	320417717	320418591	874	False	523	523	78.333	4099	4959	1	chrUn.!!$F2	860
11	TraesCS7A01G569800	chr1D	62208200	62208841	641	True	473	473	80.521	4098	4730	1	chr1D.!!$R1	632
12	TraesCS7A01G569800	chr5B	390410263	390411128	865	True	446	446	76.879	4092	4926	1	chr5B.!!$R2	834
13	TraesCS7A01G569800	chr5B	390276283	390277149	866	True	442	442	76.792	4092	4926	1	chr5B.!!$R1	834
14	TraesCS7A01G569800	chr2B	166418553	166419063	510	True	344	344	79.344	4457	4959	1	chr2B.!!$R1	502
15	TraesCS7A01G569800	chr3A	549613851	549614399	548	True	359	359	79.070	4097	4638	1	chr3A.!!$R2	541

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Hairpin	End Stability	Orientation
380	381	0.029567	CATCGGGAGCTGTCTACGAC	59.970	60.000	0.00	35.78	4.34	F
1658	1664	0.107752	TTACTCCTGCGCATCATGCA	60.108	50.000	12.24	45.36	3.96	F
2056	2062	1.209504	CCCGGAAAGAGTGGAAGCATA	59.790	52.381	0.73	0.00	3.14	F
3243	3252	0.961019	TGCCATGAAAGTCTTGTGCC	59.039	50.000	0.00	0.00	5.01	F

Position	MSA Position	Penalty	Sequence	TM	GC	Hairpin	End Stability	Orientation
1996	2002	1.406539	GCATCACTTCCGCAAATGGAT	59.593	47.619	38.00	3.41	R
3008	3016	0.407139	AGCAAAGCATCCCTCCAAGT	59.593	50.000	0.00	3.16	R
3577	3587	1.913778	ATGAATGACCTTGCTGTGCA	58.086	45.000	36.47	4.57	R
4071	4083	4.098807	TGCATACAACGCTCTTAGTCCATA	59.901	41.667	0.00	2.74	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
40	41	9.278978	ACTCATTCTTTCCTTTCTTTCTTCTAC	57.721	33.333	0.00	0.00	0.00	2.59
140	141	2.027653	GGTTGACCTTTCCCTCTCTCAG	60.028	54.545	0.00	0.00	0.00	3.35
157	158	2.364970	CTCAGCAAAACCACCCAAATGA	59.635	45.455	0.00	0.00	0.00	2.57
190	191	4.431131	ACCCAATCCTGCAGCCGG	62.431	66.667	8.66	0.00	0.00	6.13
224	225	1.375523	CCTCACACTACCCAACGGC	60.376	63.158	0.00	0.00	0.00	5.68
236	237	0.456221	CCAACGGCGACATCTACTCT	59.544	55.000	16.62	0.00	0.00	3.24
242	243	0.457851	GCGACATCTACTCTGGCACT	59.542	55.000	0.00	0.00	0.00	4.40
243	244	1.800655	GCGACATCTACTCTGGCACTG	60.801	57.143	0.00	0.00	0.00	3.66
248	249	0.457443	TCTACTCTGGCACTGCATCG	59.543	55.000	2.82	0.00	0.00	3.84
269	270	1.921346	TGGGTTACCGGATGGCACT	60.921	57.895	9.46	0.00	40.75	4.40
272	273	1.600107	GTTACCGGATGGCACTGGA	59.400	57.895	9.46	3.59	39.70	3.86
359	360	3.776158	GGCAGAACAACATGGCCA	58.224	55.556	8.56	8.56	44.01	5.36
365	366	2.019249	AGAACAACATGGCCATCATCG	58.981	47.619	17.61	7.32	32.92	3.84
380	381	0.029567	CATCGGGAGCTGTCTACGAC	59.970	60.000	0.00	0.00	35.78	4.34
383	384	2.045131	GGGAGCTGTCTACGACGGT	61.045	63.158	0.00	0.00	40.69	4.83
386	387	0.520404	GAGCTGTCTACGACGGTGAA	59.480	55.000	0.00	0.00	40.69	3.18
392	393	2.679837	TGTCTACGACGGTGAATACTCC	59.320	50.000	0.00	0.00	34.95	3.85
398	399	2.897972	GGTGAATACTCCGCCGGT	59.102	61.111	1.63	0.00	0.00	5.28
407	408	1.335132	ACTCCGCCGGTTACATGGAT	61.335	55.000	1.63	0.00	0.00	3.41
428	429	1.798813	GGTGAAGGAACACATGTCGAC	59.201	52.381	9.11	9.11	41.88	4.20
465	466	0.612732	CAAGGGGCAATGGAAGCTGA	60.613	55.000	0.00	0.00	0.00	4.26
503	504	1.623542	GCCTCCAGACGTACCCCAAT	61.624	60.000	0.00	0.00	0.00	3.16
570	571	1.363246	TGGTAGGTACACATGGGCAA	58.637	50.000	0.00	0.00	0.00	4.52
576	577	1.544537	GGTACACATGGGCAACAGACA	60.545	52.381	0.00	0.00	39.74	3.41
593	594	2.989824	AGCAGCACCTACGTCGGT	60.990	61.111	5.82	5.82	37.93	4.69
675	676	1.455849	CAGGGGAACTGGCTTGACA	59.544	57.895	0.00	0.00	43.70	3.58
680	681	0.307760	GGAACTGGCTTGACAACACG	59.692	55.000	0.00	0.00	0.00	4.49
686	687	0.385974	GGCTTGACAACACGATGCAC	60.386	55.000	0.00	0.00	0.00	4.57
711	712	1.082117	CGGATTGTACACGTGGGAGC	61.082	60.000	21.57	7.20	0.00	4.70
776	777	3.745723	GAAGGGCACTTTCTTCCCA	57.254	52.632	0.84	0.00	42.52	4.37
854	855	1.543208	GGTGTTCTGCCTGACATCACA	60.543	52.381	0.00	0.00	0.00	3.58
877	878	2.799017	TGTCATGCAATGCTCCTCTTT	58.201	42.857	6.82	0.00	46.21	2.52
884	885	2.095053	GCAATGCTCCTCTTTCTTCGAC	59.905	50.000	0.00	0.00	0.00	4.20
959	960	5.581126	ACAACTTGAGTTTTGATCAGCAA	57.419	34.783	0.00	0.00	35.83	3.91
1111	1117	0.534412	AGGTGTTCTGATCAGCGAGG	59.466	55.000	18.36	0.00	38.18	4.63
1140	1146	1.745232	ACAACGGCAACTCAGAAACA	58.255	45.000	0.00	0.00	0.00	2.83
1223	1229	3.535561	AGACGATAATCAAAGGGCACAG	58.464	45.455	0.00	0.00	0.00	3.66
1248	1254	5.022122	AGCTATGATCTAATGCTCAGCCTA	58.978	41.667	0.00	0.00	0.00	3.93
1268	1274	4.818546	CCTACAGCTTGGAATCAGGTAATG	59.181	45.833	0.00	0.00	0.00	1.90
1270	1276	2.032550	CAGCTTGGAATCAGGTAATGCG	59.967	50.000	0.00	0.00	0.00	4.73
1304	1310	9.988350	AGTACAACGTATCATCATTTGAAATTC	57.012	29.630	0.00	0.00	38.03	2.17
1306	1312	6.966632	ACAACGTATCATCATTTGAAATTCCG	59.033	34.615	0.00	0.00	38.03	4.30
1342	1348	6.370453	AGGACTTTCTTCTCTCTATCTACCC	58.630	44.000	0.00	0.00	0.00	3.69
1343	1349	6.068735	AGGACTTTCTTCTCTCTATCTACCCA	60.069	42.308	0.00	0.00	0.00	4.51
1477	1483	4.262292	GGGGTTTCTTGTTGAATACCCAAC	60.262	45.833	19.81	0.00	46.28	3.77
1653	1659	2.240500	CGGCTTACTCCTGCGCATC	61.241	63.158	12.24	0.00	0.00	3.91
1654	1660	1.153369	GGCTTACTCCTGCGCATCA	60.153	57.895	12.24	0.00	0.00	3.07
1658	1664	0.107752	TTACTCCTGCGCATCATGCA	60.108	50.000	12.24	0.00	45.36	3.96
1886	1892	6.381133	TCCTCATTTGAATAGCTAGTCAGACA	59.619	38.462	21.77	11.94	31.51	3.41
1899	1905	6.153170	AGCTAGTCAGACATCCTCATGATATG	59.847	42.308	13.84	13.84	33.72	1.78
2056	2062	1.209504	CCCGGAAAGAGTGGAAGCATA	59.790	52.381	0.73	0.00	0.00	3.14
2062	2068	6.094881	CCGGAAAGAGTGGAAGCATATTTTTA	59.905	38.462	0.00	0.00	0.00	1.52
2275	2282	7.168219	TGGTTTTGTAGCTCACTTATTGATCT	58.832	34.615	0.00	0.00	34.91	2.75
2847	2855	6.403866	TGATTGTTTGTATTTGCAGTTCCT	57.596	33.333	0.00	0.00	0.00	3.36
2848	2856	6.215121	TGATTGTTTGTATTTGCAGTTCCTG	58.785	36.000	0.00	0.00	34.12	3.86
3008	3016	6.656632	ACTATTCATTTCATCTCGAGCCTA	57.343	37.500	7.81	0.00	0.00	3.93
3074	3082	7.537715	TGACAAAAATGTATTGCCATGACTAG	58.462	34.615	0.00	0.00	0.00	2.57
3182	3191	3.127721	GGATTACAGCTTGCTTCTTGGTC	59.872	47.826	0.00	0.00	0.00	4.02
3243	3252	0.961019	TGCCATGAAAGTCTTGTGCC	59.039	50.000	0.00	0.00	0.00	5.01
3282	3291	2.550830	ACAGAAGGTGGTAAGCACTG	57.449	50.000	0.00	0.00	36.90	3.66
3724	3734	2.282391	AACATGCCCGCAAGAGCA	60.282	55.556	0.00	0.00	44.45	4.26
3725	3735	1.865788	GAACATGCCCGCAAGAGCAA	61.866	55.000	0.00	0.00	43.36	3.91
3739	3749	5.343249	GCAAGAGCAAAGAAACAAGAAGAA	58.657	37.500	0.00	0.00	41.58	2.52
3913	3923	1.929836	CCACAATTCTACTCAGAGCGC	59.070	52.381	0.00	0.00	30.73	5.92
4071	4083	8.791327	TTTCTGTTGATGTACATGTGTATGAT	57.209	30.769	14.43	0.00	37.73	2.45
4104	4116	5.353956	AGAGCGTTGTATGCAATGTATCAAA	59.646	36.000	15.87	0.00	42.13	2.69
4284	4297	7.446931	TCTGTGAATGAAGTTGCATAACCTTTA	59.553	33.333	0.00	0.00	37.52	1.85
4415	4433	7.823799	AGAAAGGAAAAAGATGCAACTTCAAAA	59.176	29.630	9.90	0.00	0.00	2.44
4451	4470	5.991328	ATCCTTTATGCGTGTCATGTTAG	57.009	39.130	0.00	0.00	36.63	2.34
4551	4595	4.944619	TTATCTCATACTCAGTGGCAGG	57.055	45.455	0.00	0.00	0.00	4.85
4734	4801	2.880443	AGCACACAAATCCTCCACAAT	58.120	42.857	0.00	0.00	0.00	2.71
4741	4808	2.752354	CAAATCCTCCACAATAACGGCA	59.248	45.455	0.00	0.00	0.00	5.69
4770	4837	8.905850	AGAAAAAGGTTTGATTAGTCCGTTTAA	58.094	29.630	0.00	0.00	33.06	1.52

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
59	60	4.447762	GGGGTGTCTTGCATATTTAGGGAT	60.448	45.833	0.00	0.00	0.00	3.85
75	76	2.985456	CAGAGCAGAGGGGGTGTC	59.015	66.667	0.00	0.00	0.00	3.67
140	141	1.805943	GCATCATTTGGGTGGTTTTGC	59.194	47.619	0.00	0.00	0.00	3.68
202	203	1.202604	CGTTGGGTAGTGTGAGGTGTT	60.203	52.381	0.00	0.00	0.00	3.32
224	225	1.800655	GCAGTGCCAGAGTAGATGTCG	60.801	57.143	2.85	0.00	0.00	4.35
236	237	2.669229	CCACACGATGCAGTGCCA	60.669	61.111	13.72	0.69	45.45	4.92
242	243	1.374885	CGGTAACCCACACGATGCA	60.375	57.895	0.00	0.00	0.00	3.96
243	244	2.104253	CCGGTAACCCACACGATGC	61.104	63.158	0.00	0.00	0.00	3.91
248	249	1.747745	GCCATCCGGTAACCCACAC	60.748	63.158	0.00	0.00	33.28	3.82
272	273	3.058160	CCGGACCAGACGTACCGT	61.058	66.667	0.00	0.00	45.10	4.83
290	291	1.410737	CGTCGTAGATGCAACCGGTG	61.411	60.000	8.52	3.35	40.67	4.94
295	296	1.472276	CTCGCCGTCGTAGATGCAAC	61.472	60.000	0.00	0.00	43.31	4.17
296	297	1.226575	CTCGCCGTCGTAGATGCAA	60.227	57.895	0.00	0.00	43.31	4.08
359	360	0.955178	CGTAGACAGCTCCCGATGAT	59.045	55.000	0.00	0.00	0.00	2.45
383	384	1.184431	TGTAACCGGCGGAGTATTCA	58.816	50.000	35.78	18.18	0.00	2.57
386	387	0.391597	CCATGTAACCGGCGGAGTAT	59.608	55.000	35.78	17.52	0.00	2.12
392	393	1.153249	ACCATCCATGTAACCGGCG	60.153	57.895	0.00	0.00	0.00	6.46
395	396	2.093181	TCCTTCACCATCCATGTAACCG	60.093	50.000	0.00	0.00	0.00	4.44
398	399	4.202514	TGTGTTCCTTCACCATCCATGTAA	60.203	41.667	0.00	0.00	37.51	2.41
407	408	1.414550	TCGACATGTGTTCCTTCACCA	59.585	47.619	1.15	0.00	37.51	4.17
428	429	3.196685	CCTTGTAGGAAGAAGAGGAGGTG	59.803	52.174	0.00	0.00	37.67	4.00
483	484	2.363925	GGGGTACGTCTGGAGGCT	60.364	66.667	0.00	0.00	0.00	4.58
486	487	0.178068	CCATTGGGGTACGTCTGGAG	59.822	60.000	0.00	0.00	0.00	3.86
491	492	0.899720	TGTCTCCATTGGGGTACGTC	59.100	55.000	1.63	0.00	38.11	4.34
503	504	3.506398	TGAACTGAGGTATGTGTCTCCA	58.494	45.455	0.00	0.00	0.00	3.86
519	520	4.751431	GCCTTGAGCCCATGAACT	57.249	55.556	0.00	0.00	34.35	3.01
570	571	1.290324	CGTAGGTGCTGCTGTCTGT	59.710	57.895	0.00	0.00	0.00	3.41
576	577	2.989824	ACCGACGTAGGTGCTGCT	60.990	61.111	20.32	0.00	44.07	4.24
593	594	1.630223	TGGTGCCATTTCTCATTGCA	58.370	45.000	0.00	0.00	0.00	4.08
671	672	1.958715	CCCGTGCATCGTGTTGTCA	60.959	57.895	0.00	0.00	37.94	3.58
673	674	0.947180	GTACCCGTGCATCGTGTTGT	60.947	55.000	0.00	0.00	37.94	3.32
675	676	1.735198	CGTACCCGTGCATCGTGTT	60.735	57.895	0.00	0.00	37.94	3.32
680	681	0.461339	ACAATCCGTACCCGTGCATC	60.461	55.000	0.00	0.00	0.00	3.91
695	696	3.226884	GTGCTCCCACGTGTACAAT	57.773	52.632	15.65	0.00	31.34	2.71
711	712	1.612463	GCCTAGATAGTACCCACCGTG	59.388	57.143	0.00	0.00	0.00	4.94
776	777	3.742983	GAGGACTCCGCGAGATTTT	57.257	52.632	8.23	0.00	33.32	1.82
854	855	3.362706	AGAGGAGCATTGCATGACATTT	58.637	40.909	11.91	0.00	0.00	2.32
904	905	1.030488	TCTAGCACCCTCTCGGTTCG	61.030	60.000	0.00	0.00	45.36	3.95
913	914	4.820775	TCTTCTGGATAATCTAGCACCCT	58.179	43.478	0.00	0.00	0.00	4.34
978	979	1.743958	CCAATGCTCTCTCTGCAAAGG	59.256	52.381	0.00	0.00	44.01	3.11
1140	1146	1.393539	CGACGTCTCGCATTTTTGGAT	59.606	47.619	14.70	0.00	31.91	3.41
1248	1254	3.019564	GCATTACCTGATTCCAAGCTGT	58.980	45.455	0.00	0.00	0.00	4.40
1285	1291	7.957484	GGTATCGGAATTTCAAATGATGATACG	59.043	37.037	15.64	1.62	38.03	3.06
1304	1310	6.223351	AGAAAGTCCTCTAAAAGGTATCGG	57.777	41.667	0.00	0.00	46.32	4.18
1306	1312	8.755028	AGAGAAGAAAGTCCTCTAAAAGGTATC	58.245	37.037	0.00	0.00	46.32	2.24
1402	1408	3.616219	TGCGCATGGATTAAAGGTAGTT	58.384	40.909	5.66	0.00	0.00	2.24
1653	1659	7.965107	GTCTTTCCACTTAAAATCTACTGCATG	59.035	37.037	0.00	0.00	0.00	4.06
1654	1660	7.885399	AGTCTTTCCACTTAAAATCTACTGCAT	59.115	33.333	0.00	0.00	0.00	3.96
1886	1892	8.663167	TGAAATAGGACAACATATCATGAGGAT	58.337	33.333	0.09	0.00	40.14	3.24
1996	2002	1.406539	GCATCACTTCCGCAAATGGAT	59.593	47.619	0.00	0.00	38.00	3.41
2056	2062	6.262273	ACCGGTCATCTTGCGATAATAAAAAT	59.738	34.615	0.00	0.00	0.00	1.82
2062	2068	2.910688	ACCGGTCATCTTGCGATAAT	57.089	45.000	0.00	0.00	0.00	1.28
2113	2119	5.790593	TCAGTAAGTGGACACAATACCTTC	58.209	41.667	5.14	0.00	30.82	3.46
2447	2454	1.609208	CACTGGAAGGTTTCACCCTG	58.391	55.000	0.00	0.00	39.75	4.45
2465	2472	8.262227	ACTAATAATGTCATTACCTTTCGACCA	58.738	33.333	7.44	0.00	0.00	4.02
2614	2621	9.337091	GTACACACAAATACCATCAAAATACAC	57.663	33.333	0.00	0.00	0.00	2.90
2847	2855	5.136828	ACATGTTTCCCATCACTACAAACA	58.863	37.500	0.00	0.00	40.31	2.83
2848	2856	5.705609	ACATGTTTCCCATCACTACAAAC	57.294	39.130	0.00	0.00	0.00	2.93
2996	3004	1.339610	CCTCCAAGTAGGCTCGAGATG	59.660	57.143	18.75	4.35	37.29	2.90
3008	3016	0.407139	AGCAAAGCATCCCTCCAAGT	59.593	50.000	0.00	0.00	0.00	3.16
3243	3252	3.820467	TGTAAGAATGGCCAGTTTGTCTG	59.180	43.478	13.05	0.00	43.27	3.51
3258	3267	4.638304	GTGCTTACCACCTTCTGTAAGAA	58.362	43.478	12.27	0.45	44.11	2.52
3282	3291	2.375110	CCGACGAAAATATGCATGCAC	58.625	47.619	25.37	8.20	0.00	4.57
3366	3375	4.511082	AGCAACAATTAACCAACACATTGC	59.489	37.500	0.00	0.00	40.09	3.56
3577	3587	1.913778	ATGAATGACCTTGCTGTGCA	58.086	45.000	0.00	0.00	36.47	4.57
3668	3678	3.434167	GGCAGCCTATCCAATTTGAGAGA	60.434	47.826	3.29	0.00	0.00	3.10
3669	3679	2.883386	GGCAGCCTATCCAATTTGAGAG	59.117	50.000	3.29	0.00	0.00	3.20
3724	3734	5.508657	GCTGCCATCTTCTTCTTGTTTCTTT	60.509	40.000	0.00	0.00	0.00	2.52
3725	3735	4.022503	GCTGCCATCTTCTTCTTGTTTCTT	60.023	41.667	0.00	0.00	0.00	2.52
3760	3770	8.178313	TGTAGAGTACCACATCATATACTTGG	57.822	38.462	0.00	0.00	0.00	3.61
3913	3923	3.187227	CGGTGTGAATGAACTTGAGGAAG	59.813	47.826	0.00	0.00	35.07	3.46
4071	4083	4.098807	TGCATACAACGCTCTTAGTCCATA	59.901	41.667	0.00	0.00	0.00	2.74
4104	4116	7.615365	TCTTAAATCCTATGTCAAAACCATGCT	59.385	33.333	0.00	0.00	0.00	3.79
4451	4470	8.946085	TGAGGATGTTAGTATTCATTTGTTGTC	58.054	33.333	0.00	0.00	0.00	3.18
4551	4595	5.200368	ACCAATTTCACAACCTGATGTTC	57.800	39.130	0.00	0.00	34.00	3.18
4734	4801	5.124645	TCAAACCTTTTTCTAGTGCCGTTA	58.875	37.500	0.00	0.00	0.00	3.18
4741	4808	7.222161	ACGGACTAATCAAACCTTTTTCTAGT	58.778	34.615	0.00	0.00	0.00	2.57
4770	4837	5.776716	TCTTTTTGCTCCTTTCTTGGATCAT	59.223	36.000	0.00	0.00	33.04	2.45

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.