Multiple sequence alignment - TraesCS7A01G569300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G569300 chr7A 100.000 3652 0 0 1 3652 736495885 736499536 0.000000e+00 6745.0
1 TraesCS7A01G569300 chr7A 81.678 2789 370 73 479 3180 736465271 736468005 0.000000e+00 2189.0
2 TraesCS7A01G569300 chr7A 85.210 906 111 12 717 1612 736444995 736445887 0.000000e+00 909.0
3 TraesCS7A01G569300 chr7A 82.684 231 32 7 4 230 736464727 736464953 8.000000e-47 198.0
4 TraesCS7A01G569300 chr7A 85.827 127 16 1 2 128 736451947 736452071 2.290000e-27 134.0
5 TraesCS7A01G569300 chr7D 90.167 2451 179 12 569 2991 631921947 631919531 0.000000e+00 3134.0
6 TraesCS7A01G569300 chr7D 82.010 2746 371 63 273 2965 631936309 631933634 0.000000e+00 2220.0
7 TraesCS7A01G569300 chr7D 82.847 1096 172 10 722 1813 631968856 631967773 0.000000e+00 968.0
8 TraesCS7A01G569300 chr7D 83.943 847 126 9 963 1805 631959685 631958845 0.000000e+00 802.0
9 TraesCS7A01G569300 chr7D 77.452 1397 234 48 1851 3196 631958828 631957462 0.000000e+00 760.0
10 TraesCS7A01G569300 chr7D 81.441 819 135 7 1851 2657 631967764 631966951 0.000000e+00 654.0
11 TraesCS7A01G569300 chr7D 83.033 666 105 6 1150 1813 631964772 631964113 6.750000e-167 597.0
12 TraesCS7A01G569300 chr7D 86.898 519 37 4 2 491 631922468 631921952 1.480000e-153 553.0
13 TraesCS7A01G569300 chr7D 82.447 564 90 7 721 1282 631963050 631962494 5.480000e-133 484.0
14 TraesCS7A01G569300 chr7D 87.727 220 9 3 3238 3457 631907048 631906847 1.310000e-59 241.0
15 TraesCS7A01G569300 chr7D 81.897 232 33 7 4 230 631938082 631937855 1.730000e-43 187.0
16 TraesCS7A01G569300 chr7B 91.916 1905 105 16 1 1868 743448987 743447095 0.000000e+00 2619.0
17 TraesCS7A01G569300 chr7B 96.990 1329 38 2 1868 3196 743433015 743431689 0.000000e+00 2231.0
18 TraesCS7A01G569300 chr7B 82.335 2553 352 49 479 2978 743458506 743456000 0.000000e+00 2124.0
19 TraesCS7A01G569300 chr7B 87.239 431 30 14 3239 3652 743431525 743431103 5.520000e-128 468.0
20 TraesCS7A01G569300 chr7B 82.684 231 34 4 4 230 743459054 743458826 2.220000e-47 200.0
21 TraesCS7A01G569300 chrUn 84.906 106 16 0 2080 2185 29890246 29890141 1.390000e-19 108.0
22 TraesCS7A01G569300 chr4B 79.675 123 19 4 2065 2185 667822106 667822224 2.340000e-12 84.2
23 TraesCS7A01G569300 chr5A 100.000 28 0 0 3000 3027 9421029 9421002 7.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G569300 chr7A 736495885 736499536 3651 False 6745.000000 6745 100.0000 1 3652 1 chr7A.!!$F3 3651
1 TraesCS7A01G569300 chr7A 736464727 736468005 3278 False 1193.500000 2189 82.1810 4 3180 2 chr7A.!!$F4 3176
2 TraesCS7A01G569300 chr7A 736444995 736445887 892 False 909.000000 909 85.2100 717 1612 1 chr7A.!!$F1 895
3 TraesCS7A01G569300 chr7D 631919531 631922468 2937 True 1843.500000 3134 88.5325 2 2991 2 chr7D.!!$R2 2989
4 TraesCS7A01G569300 chr7D 631933634 631938082 4448 True 1203.500000 2220 81.9535 4 2965 2 chr7D.!!$R3 2961
5 TraesCS7A01G569300 chr7D 631957462 631968856 11394 True 710.833333 968 81.8605 721 3196 6 chr7D.!!$R4 2475
6 TraesCS7A01G569300 chr7B 743447095 743448987 1892 True 2619.000000 2619 91.9160 1 1868 1 chr7B.!!$R1 1867
7 TraesCS7A01G569300 chr7B 743431103 743433015 1912 True 1349.500000 2231 92.1145 1868 3652 2 chr7B.!!$R2 1784
8 TraesCS7A01G569300 chr7B 743456000 743459054 3054 True 1162.000000 2124 82.5095 4 2978 2 chr7B.!!$R3 2974

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
572 2094 0.310854 AAAAACAGCGGCAGTGCTAC 59.689 50.0 16.11 7.45 45.23 3.58 F
1325 2883 0.244450 ATACGAACGAACCAGGCGAA 59.756 50.0 0.14 0.00 0.00 4.70 F
1949 3513 0.698238 TGTGTCCCCATTTCCAGAGG 59.302 55.0 0.00 0.00 0.00 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1494 3052 1.149854 GGTGGACGGGTTGGAAGTT 59.850 57.895 0.00 0.0 0.00 2.66 R
2151 3718 1.376037 CCACCTTCTTCAGTCCGGC 60.376 63.158 0.00 0.0 0.00 6.13 R
3458 14151 0.107312 CTGCTTGCTAGGAGTGGCAT 60.107 55.000 8.48 0.0 40.32 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
73 74 6.018425 CCAGTTGATAAGCACATAGTCATGTC 60.018 42.308 0.00 0.00 43.73 3.06
111 112 1.480545 TGATCCATATATCCCGTGCCG 59.519 52.381 0.00 0.00 0.00 5.69
137 140 7.827729 GGGTTTTCTAGAAAAGGCAAGTATCTA 59.172 37.037 27.04 2.46 40.53 1.98
255 1744 3.313526 GCGTATGCATGAAGGAATTCAGT 59.686 43.478 10.16 0.00 42.15 3.41
454 1963 2.420129 GGTGAACTATGGCTGGGTGTAG 60.420 54.545 0.00 0.00 0.00 2.74
477 1996 6.023603 AGAGGGGTCATAGACTTAAGAAACA 58.976 40.000 10.09 0.00 32.47 2.83
553 2074 8.485392 TCCATACATCTAGATCAAACATCACAA 58.515 33.333 1.03 0.00 0.00 3.33
572 2094 0.310854 AAAAACAGCGGCAGTGCTAC 59.689 50.000 16.11 7.45 45.23 3.58
626 2148 2.935201 GTGTTTGTTTGCCTTGCATCAA 59.065 40.909 0.00 0.00 38.76 2.57
698 2224 5.852738 GCACGAAGAGCACATATTCATAT 57.147 39.130 0.00 0.00 45.32 1.78
734 2274 2.812836 ACAATCTGGCATGTCATGGA 57.187 45.000 14.64 0.00 0.00 3.41
926 2484 1.445582 GCGCCTTGCTAGTACACGT 60.446 57.895 0.00 0.00 41.73 4.49
1257 2815 0.914417 AGAAGGCGAAGATGGGGGAA 60.914 55.000 0.00 0.00 0.00 3.97
1325 2883 0.244450 ATACGAACGAACCAGGCGAA 59.756 50.000 0.14 0.00 0.00 4.70
1431 2989 0.840288 TCTTCTACAAGGGCAGGGCA 60.840 55.000 0.00 0.00 0.00 5.36
1543 3101 1.959226 GTCACCATCACCAACGCGT 60.959 57.895 5.58 5.58 0.00 6.01
1783 3345 7.703058 ACTTGAATGTATGGGTAAAAAGAGG 57.297 36.000 0.00 0.00 0.00 3.69
1949 3513 0.698238 TGTGTCCCCATTTCCAGAGG 59.302 55.000 0.00 0.00 0.00 3.69
1952 3516 1.786441 TGTCCCCATTTCCAGAGGTTT 59.214 47.619 0.00 0.00 0.00 3.27
2003 3568 7.452880 CCAAGTTATGGGATATATGTGTTGG 57.547 40.000 0.00 0.00 46.27 3.77
2151 3718 4.855715 TGTAGGATCTTCCATAAGAGCG 57.144 45.455 0.00 0.00 46.83 5.03
2348 12844 1.106944 TCGGTGCTGGCTCATCGATA 61.107 55.000 10.66 0.00 43.72 2.92
2485 12993 2.138320 GATGTATGTGGGTGCAGATCG 58.862 52.381 0.00 0.00 0.00 3.69
2544 13052 1.429463 GTCGATGGTGTCACAGGAAC 58.571 55.000 5.12 0.00 0.00 3.62
2727 13249 3.058432 CAGACGGTCGTTCGATATATGGT 60.058 47.826 1.89 0.00 0.00 3.55
2728 13250 3.058432 AGACGGTCGTTCGATATATGGTG 60.058 47.826 1.89 0.00 0.00 4.17
2819 13353 3.189495 GCCTCTCTTGTGCTAGTTTTTCC 59.811 47.826 0.00 0.00 0.00 3.13
3170 13742 1.906574 GGTGTCCAAGGGAGTGACATA 59.093 52.381 0.00 0.00 40.75 2.29
3196 13768 0.606401 ACCGTCAGTTTGAGGCATGG 60.606 55.000 0.00 0.00 31.43 3.66
3197 13769 0.606401 CCGTCAGTTTGAGGCATGGT 60.606 55.000 0.00 0.00 31.43 3.55
3199 13771 2.002586 CGTCAGTTTGAGGCATGGTAG 58.997 52.381 0.00 0.00 0.00 3.18
3200 13772 1.740025 GTCAGTTTGAGGCATGGTAGC 59.260 52.381 0.00 0.00 0.00 3.58
3201 13773 1.630369 TCAGTTTGAGGCATGGTAGCT 59.370 47.619 0.00 0.00 34.17 3.32
3202 13774 2.040278 TCAGTTTGAGGCATGGTAGCTT 59.960 45.455 0.00 0.00 34.17 3.74
3203 13775 2.163010 CAGTTTGAGGCATGGTAGCTTG 59.837 50.000 0.00 3.56 34.17 4.01
3204 13776 1.135286 GTTTGAGGCATGGTAGCTTGC 60.135 52.381 21.02 21.02 38.14 4.01
3207 13779 0.950116 GAGGCATGGTAGCTTGCATC 59.050 55.000 27.51 26.21 41.63 3.91
3209 13781 0.950116 GGCATGGTAGCTTGCATCTC 59.050 55.000 27.51 11.60 40.66 2.75
3210 13782 1.671979 GCATGGTAGCTTGCATCTCA 58.328 50.000 23.37 0.00 38.72 3.27
3211 13783 1.332997 GCATGGTAGCTTGCATCTCAC 59.667 52.381 23.37 0.00 38.72 3.51
3212 13784 2.635714 CATGGTAGCTTGCATCTCACA 58.364 47.619 0.00 0.00 0.00 3.58
3213 13785 2.857186 TGGTAGCTTGCATCTCACAA 57.143 45.000 0.00 0.00 0.00 3.33
3214 13786 3.354948 TGGTAGCTTGCATCTCACAAT 57.645 42.857 0.00 0.00 0.00 2.71
3215 13787 4.486125 TGGTAGCTTGCATCTCACAATA 57.514 40.909 0.00 0.00 0.00 1.90
3216 13788 4.842574 TGGTAGCTTGCATCTCACAATAA 58.157 39.130 0.00 0.00 0.00 1.40
3217 13789 5.252547 TGGTAGCTTGCATCTCACAATAAA 58.747 37.500 0.00 0.00 0.00 1.40
3218 13790 5.887598 TGGTAGCTTGCATCTCACAATAAAT 59.112 36.000 0.00 0.00 0.00 1.40
3221 13796 8.405531 GGTAGCTTGCATCTCACAATAAATTTA 58.594 33.333 0.00 0.00 0.00 1.40
3280 13973 5.887598 TGATGGAATATGGGTTGAGACAAAG 59.112 40.000 0.00 0.00 0.00 2.77
3295 13988 7.015226 TGAGACAAAGTTGTGAGTTTACATG 57.985 36.000 0.42 0.00 42.43 3.21
3339 14032 5.947228 TCTTGCAAAAGTGGATAGTCAAG 57.053 39.130 0.00 0.00 0.00 3.02
3361 14054 8.319881 TCAAGGAATGAAAATTAAATCCATGCA 58.680 29.630 0.00 0.00 34.30 3.96
3363 14056 9.689501 AAGGAATGAAAATTAAATCCATGCAAT 57.310 25.926 0.00 0.00 0.00 3.56
3382 14075 7.496529 TGCAATAATCTTACATGCTAACTCC 57.503 36.000 0.00 0.00 37.86 3.85
3388 14081 5.847111 TCTTACATGCTAACTCCGTGTAT 57.153 39.130 0.00 0.00 35.35 2.29
3389 14082 5.588240 TCTTACATGCTAACTCCGTGTATG 58.412 41.667 0.00 0.00 35.35 2.39
3390 14083 3.887621 ACATGCTAACTCCGTGTATGT 57.112 42.857 0.00 0.00 33.46 2.29
3391 14084 4.994907 ACATGCTAACTCCGTGTATGTA 57.005 40.909 0.00 0.00 35.79 2.29
3392 14085 5.333299 ACATGCTAACTCCGTGTATGTAA 57.667 39.130 0.00 0.00 35.79 2.41
3393 14086 5.348986 ACATGCTAACTCCGTGTATGTAAG 58.651 41.667 0.00 0.00 35.79 2.34
3394 14087 5.126545 ACATGCTAACTCCGTGTATGTAAGA 59.873 40.000 0.00 0.00 35.79 2.10
3395 14088 4.990257 TGCTAACTCCGTGTATGTAAGAC 58.010 43.478 0.00 0.00 0.00 3.01
3430 14123 7.289310 TCAGATATCATTGGTCTGGCAAAATA 58.711 34.615 5.32 0.00 39.77 1.40
3443 14136 7.821846 GGTCTGGCAAAATATTTAAATGTCCAA 59.178 33.333 11.05 0.00 0.00 3.53
3457 14150 5.486735 AATGTCCAATTGCCTTGATTGAA 57.513 34.783 0.00 0.00 36.78 2.69
3458 14151 4.952071 TGTCCAATTGCCTTGATTGAAA 57.048 36.364 0.00 0.00 36.78 2.69
3459 14152 5.486735 TGTCCAATTGCCTTGATTGAAAT 57.513 34.783 0.00 0.00 36.78 2.17
3461 14154 4.093850 GTCCAATTGCCTTGATTGAAATGC 59.906 41.667 0.00 0.00 36.78 3.56
3462 14155 3.375922 CCAATTGCCTTGATTGAAATGCC 59.624 43.478 0.00 0.00 36.78 4.40
3463 14156 3.985019 ATTGCCTTGATTGAAATGCCA 57.015 38.095 0.00 0.00 0.00 4.92
3464 14157 2.747396 TGCCTTGATTGAAATGCCAC 57.253 45.000 0.00 0.00 0.00 5.01
3465 14158 2.250031 TGCCTTGATTGAAATGCCACT 58.750 42.857 0.00 0.00 0.00 4.00
3466 14159 2.231964 TGCCTTGATTGAAATGCCACTC 59.768 45.455 0.00 0.00 0.00 3.51
3467 14160 2.417787 GCCTTGATTGAAATGCCACTCC 60.418 50.000 0.00 0.00 0.00 3.85
3469 14162 4.272489 CCTTGATTGAAATGCCACTCCTA 58.728 43.478 0.00 0.00 0.00 2.94
3470 14163 4.337555 CCTTGATTGAAATGCCACTCCTAG 59.662 45.833 0.00 0.00 0.00 3.02
3471 14164 3.282021 TGATTGAAATGCCACTCCTAGC 58.718 45.455 0.00 0.00 0.00 3.42
3472 14165 2.877097 TTGAAATGCCACTCCTAGCA 57.123 45.000 0.00 0.00 44.45 3.49
3473 14166 2.877097 TGAAATGCCACTCCTAGCAA 57.123 45.000 0.00 0.00 43.36 3.91
3474 14167 2.715046 TGAAATGCCACTCCTAGCAAG 58.285 47.619 0.00 0.00 43.36 4.01
3475 14168 1.403323 GAAATGCCACTCCTAGCAAGC 59.597 52.381 0.00 0.00 43.36 4.01
3502 14212 3.131577 ACTCACAGTCAAACTCGTACCAA 59.868 43.478 0.00 0.00 0.00 3.67
3594 14304 4.959631 TTGTACGCTCTCTTTTAACACG 57.040 40.909 0.00 0.00 0.00 4.49
3612 14322 8.617761 TTAACACGAAACAACAGATTTTAACC 57.382 30.769 0.00 0.00 0.00 2.85
3616 14326 4.907582 CGAAACAACAGATTTTAACCGGTC 59.092 41.667 8.04 0.00 0.00 4.79
3642 14352 9.230122 CTAAATACCAATACACCATGATGCATA 57.770 33.333 0.00 0.00 0.00 3.14
3643 14353 7.452880 AATACCAATACACCATGATGCATAC 57.547 36.000 0.00 0.00 0.00 2.39
3648 14358 7.147689 ACCAATACACCATGATGCATACAAAAT 60.148 33.333 0.00 0.00 0.00 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
111 112 6.659668 AGATACTTGCCTTTTCTAGAAAACCC 59.340 38.462 23.65 17.47 35.57 4.11
114 115 8.822805 TCCTAGATACTTGCCTTTTCTAGAAAA 58.177 33.333 25.24 25.24 38.66 2.29
176 180 2.128771 TTATCTGCTTTCCAGGGTGC 57.871 50.000 0.00 0.00 42.05 5.01
255 1744 1.466856 ATCTGTTACCACCGCTACGA 58.533 50.000 0.00 0.00 0.00 3.43
348 1857 0.606401 AACCAGGGTCACATTGCTCG 60.606 55.000 0.00 0.00 0.00 5.03
420 1929 6.486657 GCCATAGTTCACCATTAATTGCTAGA 59.513 38.462 0.00 0.00 0.00 2.43
454 1963 6.107343 GTGTTTCTTAAGTCTATGACCCCTC 58.893 44.000 1.63 0.00 32.18 4.30
491 2012 9.305555 ACTATATATCACCTACCACACGTTTAT 57.694 33.333 0.00 0.00 0.00 1.40
528 2049 8.667076 TTGTGATGTTTGATCTAGATGTATGG 57.333 34.615 10.74 0.00 0.00 2.74
553 2074 0.310854 GTAGCACTGCCGCTGTTTTT 59.689 50.000 0.00 0.00 43.68 1.94
572 2094 1.730612 CGCTAGCTGGATGTGCATATG 59.269 52.381 13.93 0.00 0.00 1.78
626 2148 3.513515 TCTGTTTCTGGTGTTTGGCTTTT 59.486 39.130 0.00 0.00 0.00 2.27
698 2224 8.677300 GCCAGATTGTTCTCATTCTTGTTAATA 58.323 33.333 0.00 0.00 33.67 0.98
704 2230 5.105877 ACATGCCAGATTGTTCTCATTCTTG 60.106 40.000 0.00 0.00 33.67 3.02
890 2440 2.672478 GCGCTTGCTAGAGAAGTCTTGA 60.672 50.000 0.00 0.00 33.84 3.02
891 2441 1.658095 GCGCTTGCTAGAGAAGTCTTG 59.342 52.381 0.00 0.00 33.84 3.02
892 2442 1.404851 GGCGCTTGCTAGAGAAGTCTT 60.405 52.381 7.64 0.00 39.13 3.01
926 2484 6.042322 TGGAGGCGCTTAAATAGGAGTAAATA 59.958 38.462 7.64 0.00 0.00 1.40
1122 2680 7.512992 AGAATTTTATGATCTCCTCATCCGTT 58.487 34.615 0.00 0.00 43.70 4.44
1257 2815 4.395625 GGCAGTAAAAGTACCACTCCTTT 58.604 43.478 0.00 0.00 32.44 3.11
1319 2877 0.471617 ATAGCCAGCATTCTTCGCCT 59.528 50.000 0.00 0.00 0.00 5.52
1325 2883 2.941480 CCTTCCAATAGCCAGCATTCT 58.059 47.619 0.00 0.00 0.00 2.40
1494 3052 1.149854 GGTGGACGGGTTGGAAGTT 59.850 57.895 0.00 0.00 0.00 2.66
1497 3055 4.629523 GCGGTGGACGGGTTGGAA 62.630 66.667 0.00 0.00 44.51 3.53
1783 3345 5.305585 TCAAGAACACTACTGATGGTTTCC 58.694 41.667 0.00 0.00 0.00 3.13
1797 3359 4.398673 ACCTCGGTCTACTATCAAGAACAC 59.601 45.833 0.00 0.00 29.55 3.32
1949 3513 1.363807 GCCCTGTCCAAGTGCAAAC 59.636 57.895 0.00 0.00 0.00 2.93
1952 3516 4.641645 CGGCCCTGTCCAAGTGCA 62.642 66.667 0.00 0.00 29.47 4.57
2000 3565 3.319689 TGTCATTCACTACTCACGTCCAA 59.680 43.478 0.00 0.00 0.00 3.53
2003 3568 4.982916 ACTTTGTCATTCACTACTCACGTC 59.017 41.667 0.00 0.00 0.00 4.34
2011 3576 3.932710 GCCGATCACTTTGTCATTCACTA 59.067 43.478 0.00 0.00 0.00 2.74
2151 3718 1.376037 CCACCTTCTTCAGTCCGGC 60.376 63.158 0.00 0.00 0.00 6.13
2485 12993 2.044352 CCCCGACCATGAAACCCC 60.044 66.667 0.00 0.00 0.00 4.95
2544 13052 3.129502 CAGCCCGGTCACAGCATG 61.130 66.667 0.00 0.00 46.00 4.06
2727 13249 3.011119 GCACAAACCAATATACGGGTCA 58.989 45.455 0.00 0.00 36.05 4.02
2728 13250 2.356695 GGCACAAACCAATATACGGGTC 59.643 50.000 0.00 0.00 36.05 4.46
2819 13353 7.706159 ACAAGCCAATACACATATACACAATG 58.294 34.615 0.00 0.00 0.00 2.82
3170 13742 2.296471 CCTCAAACTGACGGTGTAGAGT 59.704 50.000 9.07 0.00 0.00 3.24
3196 13768 9.956720 ATAAATTTATTGTGAGATGCAAGCTAC 57.043 29.630 4.81 0.00 22.26 3.58
3199 13771 8.861033 TGATAAATTTATTGTGAGATGCAAGC 57.139 30.769 11.92 0.00 0.00 4.01
3217 13789 9.936329 AGGGGAAAATACTACAACATGATAAAT 57.064 29.630 0.00 0.00 0.00 1.40
3221 13796 9.936329 AAATAGGGGAAAATACTACAACATGAT 57.064 29.630 0.00 0.00 0.00 2.45
3280 13973 5.181690 TCTTTGCCATGTAAACTCACAAC 57.818 39.130 0.00 0.00 30.84 3.32
3295 13988 3.375782 ACACTTGCTGAAATCTTTGCC 57.624 42.857 0.00 0.00 0.00 4.52
3361 14054 7.272978 ACACGGAGTTAGCATGTAAGATTATT 58.727 34.615 0.00 0.00 41.61 1.40
3363 14056 6.216801 ACACGGAGTTAGCATGTAAGATTA 57.783 37.500 0.00 0.00 41.61 1.75
3367 14060 5.348986 ACATACACGGAGTTAGCATGTAAG 58.651 41.667 0.00 0.00 41.61 2.34
3382 14075 7.248437 TGATCACTTACAGTCTTACATACACG 58.752 38.462 0.00 0.00 0.00 4.49
3388 14081 9.408648 TGATATCTGATCACTTACAGTCTTACA 57.591 33.333 3.98 0.00 35.84 2.41
3391 14084 9.761504 CAATGATATCTGATCACTTACAGTCTT 57.238 33.333 3.98 0.00 35.84 3.01
3392 14085 8.366401 CCAATGATATCTGATCACTTACAGTCT 58.634 37.037 3.98 0.00 35.84 3.24
3393 14086 8.147058 ACCAATGATATCTGATCACTTACAGTC 58.853 37.037 3.98 0.00 35.84 3.51
3394 14087 8.027524 ACCAATGATATCTGATCACTTACAGT 57.972 34.615 3.98 0.00 35.84 3.55
3395 14088 8.366401 AGACCAATGATATCTGATCACTTACAG 58.634 37.037 3.98 0.00 35.72 2.74
3430 14123 8.102047 TCAATCAAGGCAATTGGACATTTAAAT 58.898 29.630 7.72 0.00 39.54 1.40
3443 14136 3.262405 AGTGGCATTTCAATCAAGGCAAT 59.738 39.130 0.00 0.00 36.50 3.56
3457 14150 0.329261 TGCTTGCTAGGAGTGGCATT 59.671 50.000 0.00 0.00 40.32 3.56
3458 14151 0.107312 CTGCTTGCTAGGAGTGGCAT 60.107 55.000 8.48 0.00 40.32 4.40
3459 14152 1.297689 CTGCTTGCTAGGAGTGGCA 59.702 57.895 8.48 7.95 38.62 4.92
3461 14154 1.451028 GGCTGCTTGCTAGGAGTGG 60.451 63.158 17.07 0.00 41.52 4.00
3462 14155 1.023513 GTGGCTGCTTGCTAGGAGTG 61.024 60.000 17.07 0.00 41.52 3.51
3463 14156 1.197430 AGTGGCTGCTTGCTAGGAGT 61.197 55.000 17.07 0.00 41.52 3.85
3464 14157 0.461693 GAGTGGCTGCTTGCTAGGAG 60.462 60.000 12.15 12.15 42.31 3.69
3465 14158 1.194121 TGAGTGGCTGCTTGCTAGGA 61.194 55.000 0.00 0.00 42.39 2.94
3466 14159 1.023513 GTGAGTGGCTGCTTGCTAGG 61.024 60.000 0.00 0.00 42.39 3.02
3467 14160 0.321034 TGTGAGTGGCTGCTTGCTAG 60.321 55.000 0.00 0.00 42.39 3.42
3469 14162 1.600076 CTGTGAGTGGCTGCTTGCT 60.600 57.895 0.00 0.00 42.39 3.91
3470 14163 1.849976 GACTGTGAGTGGCTGCTTGC 61.850 60.000 0.00 0.00 41.94 4.01
3471 14164 0.533531 TGACTGTGAGTGGCTGCTTG 60.534 55.000 0.00 0.00 0.00 4.01
3472 14165 0.181114 TTGACTGTGAGTGGCTGCTT 59.819 50.000 0.00 0.00 0.00 3.91
3473 14166 0.181114 TTTGACTGTGAGTGGCTGCT 59.819 50.000 0.00 0.00 0.00 4.24
3474 14167 0.308993 GTTTGACTGTGAGTGGCTGC 59.691 55.000 0.00 0.00 0.00 5.25
3475 14168 1.869767 GAGTTTGACTGTGAGTGGCTG 59.130 52.381 0.00 0.00 0.00 4.85
3484 14194 3.530265 TGTTGGTACGAGTTTGACTGT 57.470 42.857 0.00 0.00 0.00 3.55
3485 14195 4.116961 TCTTGTTGGTACGAGTTTGACTG 58.883 43.478 0.00 0.00 37.13 3.51
3502 14212 7.512130 TCCTGCTGATTATGTGATTATCTTGT 58.488 34.615 0.00 0.00 0.00 3.16
3572 14282 5.042593 TCGTGTTAAAAGAGAGCGTACAAA 58.957 37.500 0.00 0.00 0.00 2.83
3573 14283 4.609947 TCGTGTTAAAAGAGAGCGTACAA 58.390 39.130 0.00 0.00 0.00 2.41
3576 14286 5.042593 TGTTTCGTGTTAAAAGAGAGCGTA 58.957 37.500 0.00 0.00 0.00 4.42
3579 14289 5.565695 TGTTGTTTCGTGTTAAAAGAGAGC 58.434 37.500 0.00 0.00 0.00 4.09
3581 14291 6.971527 TCTGTTGTTTCGTGTTAAAAGAGA 57.028 33.333 0.00 0.00 0.00 3.10
3594 14304 6.068473 AGACCGGTTAAAATCTGTTGTTTC 57.932 37.500 9.42 0.00 0.00 2.78
3612 14322 6.285224 TCATGGTGTATTGGTATTTAGACCG 58.715 40.000 0.00 0.00 42.99 4.79
3616 14326 7.509141 TGCATCATGGTGTATTGGTATTTAG 57.491 36.000 8.00 0.00 0.00 1.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.