Multiple sequence alignment - TraesCS7A01G569000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G569000 chr7A 100.000 2696 0 0 1 2696 736456285 736458980 0.000000e+00 4979.0
1 TraesCS7A01G569000 chr7A 79.523 503 78 12 1156 1648 720784453 720783966 4.300000e-88 335.0
2 TraesCS7A01G569000 chr7A 85.185 108 12 3 1715 1818 720783465 720783358 1.020000e-19 108.0
3 TraesCS7A01G569000 chr7A 86.250 80 7 3 1743 1818 720782489 720782410 1.720000e-12 84.2
4 TraesCS7A01G569000 chr7D 94.622 1004 36 12 1702 2696 631945487 631944493 0.000000e+00 1539.0
5 TraesCS7A01G569000 chr7D 90.541 962 63 23 752 1705 631946458 631945517 0.000000e+00 1247.0
6 TraesCS7A01G569000 chr7D 90.977 266 22 2 354 617 631947469 631947204 9.180000e-95 357.0
7 TraesCS7A01G569000 chr7D 95.556 135 6 0 1 135 631948935 631948801 1.630000e-52 217.0
8 TraesCS7A01G569000 chr7D 95.918 49 2 0 705 753 631946619 631946571 2.230000e-11 80.5
9 TraesCS7A01G569000 chr7D 83.529 85 12 2 268 351 531194180 531194097 8.000000e-11 78.7
10 TraesCS7A01G569000 chr3B 96.970 33 1 0 303 335 731487558 731487526 3.750000e-04 56.5
11 TraesCS7A01G569000 chr5B 100.000 28 0 0 431 458 551135523 551135496 5.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G569000 chr7A 736456285 736458980 2695 False 4979.0 4979 100.0000 1 2696 1 chr7A.!!$F1 2695
1 TraesCS7A01G569000 chr7D 631944493 631948935 4442 True 688.1 1539 93.5228 1 2696 5 chr7D.!!$R2 2695

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
179 180 0.033109 TAGGAGGAGCAGTAGCAGCA 60.033 55.0 0.00 0.0 45.49 4.41 F
393 1593 0.036294 GGCCGGCTCACTTACTCTTT 60.036 55.0 28.56 0.0 0.00 2.52 F
955 2768 0.098905 ACACTCGTGATGATCGGTCG 59.901 55.0 3.74 0.0 0.00 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1003 2835 0.169672 GCTGTTGCTTGTGATGCGAT 59.830 50.000 0.00 0.0 36.03 4.58 R
1377 3210 0.244178 GACCTCGGCGAAGAAGAGTT 59.756 55.000 13.21 0.0 32.28 3.01 R
1998 3871 1.203112 AGAGGAAGAGAGTGCAGGACA 60.203 52.381 0.00 0.0 0.00 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
55 56 3.173668 TCATCCCATGTACAACTACGC 57.826 47.619 0.00 0.00 0.00 4.42
84 85 6.073222 TCAGCAAAACTAAAGTTAGTAGCAGC 60.073 38.462 17.83 13.37 42.86 5.25
88 89 2.734492 ACTAAAGTTAGTAGCAGCGGCG 60.734 50.000 0.51 0.51 41.92 6.46
123 124 2.884894 GCAATAGCGGTAGTGGTAGT 57.115 50.000 21.81 0.00 0.00 2.73
135 136 5.069781 CGGTAGTGGTAGTAGTAGGAGTAGT 59.930 48.000 0.00 0.00 0.00 2.73
137 138 7.523052 CGGTAGTGGTAGTAGTAGGAGTAGTAG 60.523 48.148 0.00 0.00 0.00 2.57
139 140 7.747809 AGTGGTAGTAGTAGGAGTAGTAGTT 57.252 40.000 0.00 0.00 0.00 2.24
141 142 8.610369 AGTGGTAGTAGTAGGAGTAGTAGTTTT 58.390 37.037 0.00 0.00 0.00 2.43
142 143 9.237187 GTGGTAGTAGTAGGAGTAGTAGTTTTT 57.763 37.037 0.00 0.00 0.00 1.94
166 167 8.857694 TTTTTGGAATTAGTAACAGTAGGAGG 57.142 34.615 0.00 0.00 0.00 4.30
167 168 7.801893 TTTGGAATTAGTAACAGTAGGAGGA 57.198 36.000 0.00 0.00 0.00 3.71
168 169 7.419711 TTGGAATTAGTAACAGTAGGAGGAG 57.580 40.000 0.00 0.00 0.00 3.69
169 170 5.363005 TGGAATTAGTAACAGTAGGAGGAGC 59.637 44.000 0.00 0.00 0.00 4.70
170 171 5.363005 GGAATTAGTAACAGTAGGAGGAGCA 59.637 44.000 0.00 0.00 0.00 4.26
171 172 6.461788 GGAATTAGTAACAGTAGGAGGAGCAG 60.462 46.154 0.00 0.00 0.00 4.24
172 173 3.459710 AGTAACAGTAGGAGGAGCAGT 57.540 47.619 0.00 0.00 0.00 4.40
173 174 4.587976 AGTAACAGTAGGAGGAGCAGTA 57.412 45.455 0.00 0.00 0.00 2.74
174 175 4.528920 AGTAACAGTAGGAGGAGCAGTAG 58.471 47.826 0.00 0.00 0.00 2.57
175 176 1.770294 ACAGTAGGAGGAGCAGTAGC 58.230 55.000 0.00 0.00 42.56 3.58
176 177 1.006043 ACAGTAGGAGGAGCAGTAGCA 59.994 52.381 0.00 0.00 45.49 3.49
177 178 1.680735 CAGTAGGAGGAGCAGTAGCAG 59.319 57.143 0.00 0.00 45.49 4.24
178 179 0.387565 GTAGGAGGAGCAGTAGCAGC 59.612 60.000 0.00 0.00 45.49 5.25
179 180 0.033109 TAGGAGGAGCAGTAGCAGCA 60.033 55.000 0.00 0.00 45.49 4.41
180 181 1.153469 GGAGGAGCAGTAGCAGCAC 60.153 63.158 0.00 0.00 45.49 4.40
181 182 1.593787 GAGGAGCAGTAGCAGCACA 59.406 57.895 0.00 0.00 45.49 4.57
182 183 0.177604 GAGGAGCAGTAGCAGCACAT 59.822 55.000 0.00 0.00 45.49 3.21
183 184 1.410517 GAGGAGCAGTAGCAGCACATA 59.589 52.381 0.00 0.00 45.49 2.29
184 185 1.411977 AGGAGCAGTAGCAGCACATAG 59.588 52.381 0.00 0.00 45.49 2.23
185 186 1.216122 GAGCAGTAGCAGCACATAGC 58.784 55.000 0.00 0.00 45.49 2.97
186 187 0.538584 AGCAGTAGCAGCACATAGCA 59.461 50.000 0.00 0.00 45.49 3.49
187 188 1.065926 AGCAGTAGCAGCACATAGCAA 60.066 47.619 0.00 0.00 45.49 3.91
188 189 3.254639 AGCAGTAGCAGCACATAGCAAC 61.255 50.000 0.00 0.00 45.49 4.17
189 190 5.741719 AGCAGTAGCAGCACATAGCAACA 62.742 47.826 0.00 0.00 45.49 3.33
194 195 4.779819 GCACATAGCAACAGCAGC 57.220 55.556 0.00 0.00 44.79 5.25
195 196 1.878070 GCACATAGCAACAGCAGCA 59.122 52.632 0.00 0.00 44.79 4.41
196 197 0.241749 GCACATAGCAACAGCAGCAA 59.758 50.000 0.00 0.00 44.79 3.91
197 198 1.336148 GCACATAGCAACAGCAGCAAA 60.336 47.619 0.00 0.00 44.79 3.68
198 199 2.863312 GCACATAGCAACAGCAGCAAAA 60.863 45.455 0.00 0.00 44.79 2.44
199 200 2.984471 CACATAGCAACAGCAGCAAAAG 59.016 45.455 0.00 0.00 0.00 2.27
200 201 2.624838 ACATAGCAACAGCAGCAAAAGT 59.375 40.909 0.00 0.00 0.00 2.66
201 202 3.820467 ACATAGCAACAGCAGCAAAAGTA 59.180 39.130 0.00 0.00 0.00 2.24
202 203 4.083110 ACATAGCAACAGCAGCAAAAGTAG 60.083 41.667 0.00 0.00 0.00 2.57
203 204 2.301346 AGCAACAGCAGCAAAAGTAGT 58.699 42.857 0.00 0.00 0.00 2.73
204 205 3.476552 AGCAACAGCAGCAAAAGTAGTA 58.523 40.909 0.00 0.00 0.00 1.82
205 206 3.499918 AGCAACAGCAGCAAAAGTAGTAG 59.500 43.478 0.00 0.00 0.00 2.57
206 207 3.251004 GCAACAGCAGCAAAAGTAGTAGT 59.749 43.478 0.00 0.00 0.00 2.73
207 208 4.451096 GCAACAGCAGCAAAAGTAGTAGTA 59.549 41.667 0.00 0.00 0.00 1.82
208 209 5.389935 GCAACAGCAGCAAAAGTAGTAGTAG 60.390 44.000 0.00 0.00 0.00 2.57
209 210 5.470047 ACAGCAGCAAAAGTAGTAGTAGT 57.530 39.130 0.00 0.00 0.00 2.73
210 211 6.585695 ACAGCAGCAAAAGTAGTAGTAGTA 57.414 37.500 0.00 0.00 0.00 1.82
211 212 6.622549 ACAGCAGCAAAAGTAGTAGTAGTAG 58.377 40.000 0.00 0.00 0.00 2.57
212 213 6.208994 ACAGCAGCAAAAGTAGTAGTAGTAGT 59.791 38.462 0.00 0.00 0.00 2.73
213 214 7.392673 ACAGCAGCAAAAGTAGTAGTAGTAGTA 59.607 37.037 0.00 0.00 0.00 1.82
214 215 7.911205 CAGCAGCAAAAGTAGTAGTAGTAGTAG 59.089 40.741 0.00 0.00 0.00 2.57
215 216 7.611079 AGCAGCAAAAGTAGTAGTAGTAGTAGT 59.389 37.037 0.00 0.00 0.00 2.73
216 217 8.887717 GCAGCAAAAGTAGTAGTAGTAGTAGTA 58.112 37.037 0.98 0.00 0.00 1.82
233 234 6.923928 AGTAGTAGTAACAGTAGCAGTAGC 57.076 41.667 0.00 0.00 42.56 3.58
239 240 5.254901 AGTAACAGTAGCAGTAGCAGTAGT 58.745 41.667 0.00 0.00 45.49 2.73
241 242 5.821516 AACAGTAGCAGTAGCAGTAGTAG 57.178 43.478 0.00 0.00 45.49 2.57
248 249 3.549221 GCAGTAGCAGTAGTAGTAGCAGC 60.549 52.174 0.00 0.00 41.58 5.25
266 267 1.794864 CAGCAGCAGCAGTAGCAAG 59.205 57.895 3.17 0.00 45.49 4.01
272 499 3.242673 GCAGCAGCAGTAGCAAGATAAAG 60.243 47.826 0.00 0.00 45.49 1.85
282 509 7.641802 GCAGTAGCAAGATAAAGAATAGCAAAC 59.358 37.037 0.00 0.00 41.58 2.93
330 558 1.203994 GGTGCAAGATGCTCAAATGCT 59.796 47.619 3.78 0.00 45.31 3.79
341 569 5.450592 TGCTCAAATGCTTGATGTTTGTA 57.549 34.783 0.00 0.00 40.78 2.41
342 570 5.840715 TGCTCAAATGCTTGATGTTTGTAA 58.159 33.333 0.00 0.00 40.78 2.41
374 1574 3.699538 GGCCTTTGTCTACCCTTAAATGG 59.300 47.826 0.00 0.00 0.00 3.16
393 1593 0.036294 GGCCGGCTCACTTACTCTTT 60.036 55.000 28.56 0.00 0.00 2.52
404 1604 4.058817 CACTTACTCTTTCTGGTTCGCTT 58.941 43.478 0.00 0.00 0.00 4.68
428 1629 3.419759 GCATCGGGCGACAAACGT 61.420 61.111 0.00 0.00 44.60 3.99
430 1631 1.154488 CATCGGGCGACAAACGTTG 60.154 57.895 0.00 0.00 44.60 4.10
449 1650 1.721487 CAACGAGCGGCAAATAGGG 59.279 57.895 1.45 0.00 0.00 3.53
454 1655 1.202143 CGAGCGGCAAATAGGGTTTTC 60.202 52.381 1.45 0.00 0.00 2.29
470 1671 5.835280 AGGGTTTTCCATGATTATTAGCAGG 59.165 40.000 0.00 0.00 42.91 4.85
547 1749 4.382577 GGCCCATGAATTCGGTTTTGTATT 60.383 41.667 0.04 0.00 0.00 1.89
555 1757 2.147958 TCGGTTTTGTATTCTGCGCTT 58.852 42.857 9.73 0.00 0.00 4.68
561 1763 4.661993 TTTGTATTCTGCGCTTAGTGTG 57.338 40.909 9.73 0.00 0.00 3.82
574 1776 3.127721 GCTTAGTGTGCTGAGGAAATTCC 59.872 47.826 3.29 3.29 36.58 3.01
635 2247 4.405116 ACCAAACGTGTTTCCTGTAGTA 57.595 40.909 0.00 0.00 0.00 1.82
644 2256 4.082136 GTGTTTCCTGTAGTAGTAGCAGCT 60.082 45.833 0.00 0.00 0.00 4.24
649 2261 3.181471 CCTGTAGTAGTAGCAGCTGCAAT 60.181 47.826 38.24 25.22 45.16 3.56
658 2270 3.844577 AGCAGCTGCAATAAGAACAAG 57.155 42.857 38.24 0.00 45.16 3.16
667 2279 6.291796 GCTGCAATAAGAACAAGAACAACAAC 60.292 38.462 0.00 0.00 0.00 3.32
669 2281 7.990917 TGCAATAAGAACAAGAACAACAACTA 58.009 30.769 0.00 0.00 0.00 2.24
670 2282 8.128582 TGCAATAAGAACAAGAACAACAACTAG 58.871 33.333 0.00 0.00 0.00 2.57
681 2293 8.540492 CAAGAACAACAACTAGTACTACAACAG 58.460 37.037 0.00 0.00 0.00 3.16
685 2297 5.786264 ACAACTAGTACTACAACAGCACT 57.214 39.130 0.00 0.00 35.00 4.40
690 2302 4.785511 AGTACTACAACAGCACTACCAG 57.214 45.455 0.00 0.00 28.34 4.00
694 2306 0.600255 ACAACAGCACTACCAGCGAC 60.600 55.000 0.00 0.00 37.01 5.19
697 2309 0.321671 ACAGCACTACCAGCGACAAT 59.678 50.000 0.00 0.00 37.01 2.71
703 2315 3.242413 GCACTACCAGCGACAATAACATG 60.242 47.826 0.00 0.00 0.00 3.21
772 2585 3.433314 CCTTGAGAGGTAGCAGCATGATT 60.433 47.826 0.00 0.00 36.81 2.57
848 2661 5.163581 GGACATGCATATTGCTTCTGTCTTT 60.164 40.000 19.60 0.00 45.31 2.52
864 2677 2.415512 GTCTTTGACGGGCTAACACATC 59.584 50.000 0.00 0.00 0.00 3.06
865 2678 1.393539 CTTTGACGGGCTAACACATCG 59.606 52.381 0.00 0.00 0.00 3.84
867 2680 0.604073 TGACGGGCTAACACATCGAA 59.396 50.000 0.00 0.00 0.00 3.71
868 2681 1.206132 TGACGGGCTAACACATCGAAT 59.794 47.619 0.00 0.00 0.00 3.34
869 2682 1.593006 GACGGGCTAACACATCGAATG 59.407 52.381 0.00 0.00 0.00 2.67
870 2683 0.304705 CGGGCTAACACATCGAATGC 59.695 55.000 0.00 0.00 0.00 3.56
871 2684 1.378531 GGGCTAACACATCGAATGCA 58.621 50.000 0.00 0.00 0.00 3.96
873 2686 1.064060 GGCTAACACATCGAATGCACC 59.936 52.381 0.00 0.00 0.00 5.01
874 2687 2.009774 GCTAACACATCGAATGCACCT 58.990 47.619 0.00 0.00 0.00 4.00
875 2688 2.223112 GCTAACACATCGAATGCACCTG 60.223 50.000 0.00 0.00 0.00 4.00
876 2689 0.523072 AACACATCGAATGCACCTGC 59.477 50.000 0.00 0.00 42.50 4.85
898 2711 5.220381 GCATTGCATGATGATAGGTGAAAG 58.780 41.667 3.15 0.00 0.00 2.62
903 2716 7.092137 TGCATGATGATAGGTGAAAGAAAAG 57.908 36.000 0.00 0.00 0.00 2.27
918 2731 6.745450 TGAAAGAAAAGTCACACAAATCGAAC 59.255 34.615 0.00 0.00 0.00 3.95
930 2743 2.488355 TCGAACGCACCTCGATCC 59.512 61.111 0.00 0.00 40.25 3.36
955 2768 0.098905 ACACTCGTGATGATCGGTCG 59.901 55.000 3.74 0.00 0.00 4.79
972 2804 4.214758 TCGGTCGATATGGCCATATATACG 59.785 45.833 33.40 29.97 34.36 3.06
994 2826 2.079158 ACTTGTTGCACTGATCCATCG 58.921 47.619 0.00 0.00 0.00 3.84
995 2827 1.399440 CTTGTTGCACTGATCCATCGG 59.601 52.381 0.00 0.00 39.11 4.18
996 2828 0.324614 TGTTGCACTGATCCATCGGT 59.675 50.000 0.00 0.00 46.85 4.69
997 2829 1.009829 GTTGCACTGATCCATCGGTC 58.990 55.000 0.00 0.00 44.22 4.79
998 2830 0.460109 TTGCACTGATCCATCGGTCG 60.460 55.000 0.00 0.00 44.22 4.79
999 2831 2.240500 GCACTGATCCATCGGTCGC 61.241 63.158 0.00 3.34 44.22 5.19
1000 2832 1.141665 CACTGATCCATCGGTCGCA 59.858 57.895 0.00 0.00 44.22 5.10
1001 2833 1.141881 ACTGATCCATCGGTCGCAC 59.858 57.895 0.00 0.00 42.52 5.34
1002 2834 1.323271 ACTGATCCATCGGTCGCACT 61.323 55.000 0.00 0.00 42.52 4.40
1003 2835 0.668535 CTGATCCATCGGTCGCACTA 59.331 55.000 0.00 0.00 0.00 2.74
1020 2852 2.416202 CACTATCGCATCACAAGCAACA 59.584 45.455 0.00 0.00 0.00 3.33
1037 2869 1.675552 ACAGCACTAAACCACACCAC 58.324 50.000 0.00 0.00 0.00 4.16
1038 2870 1.065053 ACAGCACTAAACCACACCACA 60.065 47.619 0.00 0.00 0.00 4.17
1039 2871 1.333619 CAGCACTAAACCACACCACAC 59.666 52.381 0.00 0.00 0.00 3.82
1040 2872 0.666374 GCACTAAACCACACCACACC 59.334 55.000 0.00 0.00 0.00 4.16
1041 2873 2.019668 GCACTAAACCACACCACACCA 61.020 52.381 0.00 0.00 0.00 4.17
1042 2874 1.673920 CACTAAACCACACCACACCAC 59.326 52.381 0.00 0.00 0.00 4.16
1043 2875 1.282447 ACTAAACCACACCACACCACA 59.718 47.619 0.00 0.00 0.00 4.17
1044 2876 1.946768 CTAAACCACACCACACCACAG 59.053 52.381 0.00 0.00 0.00 3.66
1045 2877 1.319614 AAACCACACCACACCACAGC 61.320 55.000 0.00 0.00 0.00 4.40
1046 2878 2.124362 CCACACCACACCACAGCA 60.124 61.111 0.00 0.00 0.00 4.41
1047 2879 2.188829 CCACACCACACCACAGCAG 61.189 63.158 0.00 0.00 0.00 4.24
1048 2880 2.188829 CACACCACACCACAGCAGG 61.189 63.158 0.00 0.00 0.00 4.85
1087 2919 2.145397 ATGGCGTCTAGAGGTGAGAA 57.855 50.000 13.65 0.00 0.00 2.87
1144 2976 6.200854 CAGCACTACAGCGAAAATCATGTATA 59.799 38.462 0.00 0.00 40.15 1.47
1145 2977 6.931281 AGCACTACAGCGAAAATCATGTATAT 59.069 34.615 0.00 0.00 40.15 0.86
1146 2978 8.088365 AGCACTACAGCGAAAATCATGTATATA 58.912 33.333 0.00 0.00 40.15 0.86
1147 2979 8.873830 GCACTACAGCGAAAATCATGTATATAT 58.126 33.333 0.00 0.00 0.00 0.86
1205 3037 3.878778 TCTTCTTTGCTCCCATCTTAGC 58.121 45.455 0.00 0.00 39.25 3.09
1242 3075 5.185454 TCAATCTTGGCTGAATGATTACGT 58.815 37.500 0.00 0.00 0.00 3.57
1245 3078 7.498900 TCAATCTTGGCTGAATGATTACGTTAT 59.501 33.333 0.00 0.00 0.00 1.89
1246 3079 8.773645 CAATCTTGGCTGAATGATTACGTTATA 58.226 33.333 0.00 0.00 0.00 0.98
1251 3084 8.129496 TGGCTGAATGATTACGTTATATAGGA 57.871 34.615 0.00 0.00 0.00 2.94
1356 3189 0.321564 CATGTCAACTTCAGGGCCGA 60.322 55.000 0.00 0.00 0.00 5.54
1357 3190 0.620556 ATGTCAACTTCAGGGCCGAT 59.379 50.000 0.00 0.00 0.00 4.18
1449 3282 1.827344 CTGTGTCATGCTAGGAGGACA 59.173 52.381 25.12 25.12 37.89 4.02
1472 3305 6.183360 ACAATCCAGTACGTAATCCTAGTTCC 60.183 42.308 0.00 0.00 0.00 3.62
1486 3319 4.593206 TCCTAGTTCCTTTCTCTCTTTGCA 59.407 41.667 0.00 0.00 0.00 4.08
1487 3320 5.249393 TCCTAGTTCCTTTCTCTCTTTGCAT 59.751 40.000 0.00 0.00 0.00 3.96
1498 3331 3.634504 TCTCTTTGCATGCCCATACATT 58.365 40.909 16.68 0.00 0.00 2.71
1507 3340 5.009911 TGCATGCCCATACATTTTGAGTATC 59.990 40.000 16.68 0.00 30.08 2.24
1539 3372 6.403866 TTGAGACACTTGGTTATTTGCAAT 57.596 33.333 0.00 0.00 0.00 3.56
1544 3377 6.482973 AGACACTTGGTTATTTGCAATTTTGG 59.517 34.615 0.00 0.00 0.00 3.28
1573 3406 2.534298 TGGTCAACAAACAATTGCACG 58.466 42.857 5.05 0.00 40.34 5.34
1591 3424 0.373716 CGTTTTGCTCCGGTATCTGC 59.626 55.000 0.00 0.12 0.00 4.26
1597 3430 1.762460 CTCCGGTATCTGCCACCCT 60.762 63.158 0.00 0.00 31.96 4.34
1628 3461 1.454847 ACCTTTGACTTTGGCCGCA 60.455 52.632 0.00 0.00 0.00 5.69
1644 3477 0.109597 CGCAAGTGAATGAAGCACCC 60.110 55.000 0.00 0.00 36.95 4.61
1705 3538 9.988815 ATGCACTCCAGAATAAATTACTAGTAG 57.011 33.333 2.23 0.00 0.00 2.57
1738 3604 9.848710 AATAAATTTAGGGTAGAAAGACTAGGC 57.151 33.333 3.94 0.00 0.00 3.93
1739 3605 5.890752 ATTTAGGGTAGAAAGACTAGGCC 57.109 43.478 0.00 0.00 0.00 5.19
1740 3606 4.621797 TTAGGGTAGAAAGACTAGGCCT 57.378 45.455 11.78 11.78 0.00 5.19
1741 3607 2.753247 AGGGTAGAAAGACTAGGCCTG 58.247 52.381 17.99 8.18 0.00 4.85
1745 3611 0.908198 AGAAAGACTAGGCCTGCTGG 59.092 55.000 17.99 5.03 0.00 4.85
2002 3875 9.394477 GTGTCAAATAAGTAAAAAGTGATGTCC 57.606 33.333 0.00 0.00 0.00 4.02
2003 3876 9.349713 TGTCAAATAAGTAAAAAGTGATGTCCT 57.650 29.630 0.00 0.00 0.00 3.85
2013 3886 2.255406 AGTGATGTCCTGCACTCTCTT 58.745 47.619 0.00 0.00 41.21 2.85
2014 3887 2.233431 AGTGATGTCCTGCACTCTCTTC 59.767 50.000 0.00 0.00 41.21 2.87
2015 3888 1.552337 TGATGTCCTGCACTCTCTTCC 59.448 52.381 0.00 0.00 0.00 3.46
2016 3889 1.830477 GATGTCCTGCACTCTCTTCCT 59.170 52.381 0.00 0.00 0.00 3.36
2017 3890 1.261480 TGTCCTGCACTCTCTTCCTC 58.739 55.000 0.00 0.00 0.00 3.71
2018 3891 1.203112 TGTCCTGCACTCTCTTCCTCT 60.203 52.381 0.00 0.00 0.00 3.69
2019 3892 1.899142 GTCCTGCACTCTCTTCCTCTT 59.101 52.381 0.00 0.00 0.00 2.85
2020 3893 2.301583 GTCCTGCACTCTCTTCCTCTTT 59.698 50.000 0.00 0.00 0.00 2.52
2021 3894 2.564947 TCCTGCACTCTCTTCCTCTTTC 59.435 50.000 0.00 0.00 0.00 2.62
2040 3913 5.485353 TCTTTCTCTCTCTCACTCTCTCTCT 59.515 44.000 0.00 0.00 0.00 3.10
2058 3931 3.753272 TCTCTTAGTTGAAATGCAGTGGC 59.247 43.478 0.00 0.00 41.68 5.01
2102 3976 7.230849 TGGTTGCTGATAAAAACAGATTGAT 57.769 32.000 0.00 0.00 37.54 2.57
2191 4066 2.444766 CCCCTTTCCCATCTATTGCTCT 59.555 50.000 0.00 0.00 0.00 4.09
2241 4116 6.594547 GGTTTACACTTAGGAAGTTCCATCTC 59.405 42.308 23.87 0.00 40.46 2.75
2244 4119 3.519510 CACTTAGGAAGTTCCATCTCCCA 59.480 47.826 23.87 0.00 40.46 4.37
2262 4137 4.628074 TCCCAGTTTCAGTTAGAAAGACG 58.372 43.478 0.00 0.00 46.34 4.18
2306 4181 6.058183 GTGATACCAAGGATTTAGTGCTCAT 58.942 40.000 0.00 0.00 0.00 2.90
2316 4191 5.526846 GGATTTAGTGCTCATCCTCTTCAAG 59.473 44.000 0.00 0.00 34.63 3.02
2338 4213 9.066892 TCAAGTTAACATAGTGCTCTCAAAAAT 57.933 29.630 8.61 0.00 0.00 1.82
2412 4287 2.557920 AGCTTCTTCCCACAACTCAG 57.442 50.000 0.00 0.00 0.00 3.35
2571 4446 2.354510 TCTCACTTGCAACCGTGAAAAG 59.645 45.455 18.74 10.22 39.43 2.27
2600 4475 6.597832 ATTCTATGACCTCCATACTAGCAC 57.402 41.667 0.00 0.00 36.71 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
88 89 3.488090 GCTACTGTTGTCGCCGCC 61.488 66.667 0.00 0.00 0.00 6.13
141 142 8.662255 TCCTCCTACTGTTACTAATTCCAAAAA 58.338 33.333 0.00 0.00 0.00 1.94
142 143 8.209802 TCCTCCTACTGTTACTAATTCCAAAA 57.790 34.615 0.00 0.00 0.00 2.44
143 144 7.580882 GCTCCTCCTACTGTTACTAATTCCAAA 60.581 40.741 0.00 0.00 0.00 3.28
144 145 6.127140 GCTCCTCCTACTGTTACTAATTCCAA 60.127 42.308 0.00 0.00 0.00 3.53
145 146 5.363005 GCTCCTCCTACTGTTACTAATTCCA 59.637 44.000 0.00 0.00 0.00 3.53
146 147 5.363005 TGCTCCTCCTACTGTTACTAATTCC 59.637 44.000 0.00 0.00 0.00 3.01
147 148 6.097129 ACTGCTCCTCCTACTGTTACTAATTC 59.903 42.308 0.00 0.00 0.00 2.17
148 149 5.958987 ACTGCTCCTCCTACTGTTACTAATT 59.041 40.000 0.00 0.00 0.00 1.40
149 150 5.520751 ACTGCTCCTCCTACTGTTACTAAT 58.479 41.667 0.00 0.00 0.00 1.73
150 151 4.931914 ACTGCTCCTCCTACTGTTACTAA 58.068 43.478 0.00 0.00 0.00 2.24
151 152 4.587976 ACTGCTCCTCCTACTGTTACTA 57.412 45.455 0.00 0.00 0.00 1.82
152 153 3.459710 ACTGCTCCTCCTACTGTTACT 57.540 47.619 0.00 0.00 0.00 2.24
153 154 3.067040 GCTACTGCTCCTCCTACTGTTAC 59.933 52.174 0.00 0.00 36.03 2.50
154 155 3.288964 GCTACTGCTCCTCCTACTGTTA 58.711 50.000 0.00 0.00 36.03 2.41
155 156 2.104170 GCTACTGCTCCTCCTACTGTT 58.896 52.381 0.00 0.00 36.03 3.16
156 157 1.006043 TGCTACTGCTCCTCCTACTGT 59.994 52.381 0.00 0.00 40.48 3.55
157 158 1.680735 CTGCTACTGCTCCTCCTACTG 59.319 57.143 0.00 0.00 40.48 2.74
158 159 2.026905 GCTGCTACTGCTCCTCCTACT 61.027 57.143 0.00 0.00 40.48 2.57
159 160 0.387565 GCTGCTACTGCTCCTCCTAC 59.612 60.000 0.00 0.00 40.48 3.18
160 161 0.033109 TGCTGCTACTGCTCCTCCTA 60.033 55.000 0.00 0.00 40.48 2.94
161 162 1.305633 TGCTGCTACTGCTCCTCCT 60.306 57.895 0.00 0.00 40.48 3.69
162 163 1.153469 GTGCTGCTACTGCTCCTCC 60.153 63.158 0.00 0.00 40.48 4.30
163 164 0.177604 ATGTGCTGCTACTGCTCCTC 59.822 55.000 0.00 0.00 40.48 3.71
164 165 1.411977 CTATGTGCTGCTACTGCTCCT 59.588 52.381 0.00 0.00 40.48 3.69
165 166 1.863267 CTATGTGCTGCTACTGCTCC 58.137 55.000 0.00 0.00 40.48 4.70
166 167 1.216122 GCTATGTGCTGCTACTGCTC 58.784 55.000 0.00 0.00 40.48 4.26
167 168 0.538584 TGCTATGTGCTGCTACTGCT 59.461 50.000 0.00 0.00 43.37 4.24
168 169 1.063174 GTTGCTATGTGCTGCTACTGC 59.937 52.381 0.00 0.00 43.37 4.40
169 170 2.349590 TGTTGCTATGTGCTGCTACTG 58.650 47.619 0.00 0.00 43.37 2.74
170 171 2.625737 CTGTTGCTATGTGCTGCTACT 58.374 47.619 0.00 0.00 43.37 2.57
171 172 1.063174 GCTGTTGCTATGTGCTGCTAC 59.937 52.381 0.00 0.00 43.37 3.58
172 173 1.338960 TGCTGTTGCTATGTGCTGCTA 60.339 47.619 0.00 0.00 43.37 3.49
173 174 0.607217 TGCTGTTGCTATGTGCTGCT 60.607 50.000 0.00 0.00 43.37 4.24
174 175 0.179171 CTGCTGTTGCTATGTGCTGC 60.179 55.000 0.00 0.00 43.37 5.25
175 176 0.179171 GCTGCTGTTGCTATGTGCTG 60.179 55.000 0.00 0.00 43.37 4.41
176 177 0.607217 TGCTGCTGTTGCTATGTGCT 60.607 50.000 0.00 0.00 43.37 4.40
177 178 0.241749 TTGCTGCTGTTGCTATGTGC 59.758 50.000 0.00 0.00 40.48 4.57
178 179 2.710220 TTTGCTGCTGTTGCTATGTG 57.290 45.000 0.00 0.00 40.48 3.21
179 180 2.624838 ACTTTTGCTGCTGTTGCTATGT 59.375 40.909 0.00 0.00 40.48 2.29
180 181 3.293311 ACTTTTGCTGCTGTTGCTATG 57.707 42.857 0.00 0.00 40.48 2.23
181 182 4.074970 ACTACTTTTGCTGCTGTTGCTAT 58.925 39.130 0.00 0.00 40.48 2.97
182 183 3.476552 ACTACTTTTGCTGCTGTTGCTA 58.523 40.909 0.00 0.00 40.48 3.49
183 184 2.301346 ACTACTTTTGCTGCTGTTGCT 58.699 42.857 0.00 0.00 40.48 3.91
184 185 2.781945 ACTACTTTTGCTGCTGTTGC 57.218 45.000 0.00 0.00 40.20 4.17
185 186 5.696724 ACTACTACTACTTTTGCTGCTGTTG 59.303 40.000 0.00 0.00 0.00 3.33
186 187 5.855045 ACTACTACTACTTTTGCTGCTGTT 58.145 37.500 0.00 0.00 0.00 3.16
187 188 5.470047 ACTACTACTACTTTTGCTGCTGT 57.530 39.130 0.00 0.00 0.00 4.40
188 189 6.622549 ACTACTACTACTACTTTTGCTGCTG 58.377 40.000 0.00 0.00 0.00 4.41
189 190 6.837471 ACTACTACTACTACTTTTGCTGCT 57.163 37.500 0.00 0.00 0.00 4.24
190 191 7.760437 ACTACTACTACTACTACTTTTGCTGC 58.240 38.462 0.00 0.00 0.00 5.25
204 205 8.757877 ACTGCTACTGTTACTACTACTACTACT 58.242 37.037 0.00 0.00 0.00 2.57
205 206 8.940768 ACTGCTACTGTTACTACTACTACTAC 57.059 38.462 0.00 0.00 0.00 2.73
207 208 7.710475 GCTACTGCTACTGTTACTACTACTACT 59.290 40.741 0.00 0.00 36.03 2.57
208 209 7.493971 TGCTACTGCTACTGTTACTACTACTAC 59.506 40.741 0.00 0.00 40.48 2.73
209 210 7.559486 TGCTACTGCTACTGTTACTACTACTA 58.441 38.462 0.00 0.00 40.48 1.82
210 211 6.413052 TGCTACTGCTACTGTTACTACTACT 58.587 40.000 0.00 0.00 40.48 2.57
211 212 6.315891 ACTGCTACTGCTACTGTTACTACTAC 59.684 42.308 0.00 0.00 40.48 2.73
212 213 6.413052 ACTGCTACTGCTACTGTTACTACTA 58.587 40.000 0.00 0.00 40.48 1.82
213 214 5.254901 ACTGCTACTGCTACTGTTACTACT 58.745 41.667 0.00 0.00 40.48 2.57
214 215 5.564048 ACTGCTACTGCTACTGTTACTAC 57.436 43.478 0.00 0.00 40.48 2.73
215 216 6.413052 ACTACTGCTACTGCTACTGTTACTA 58.587 40.000 0.00 0.00 40.48 1.82
216 217 5.254901 ACTACTGCTACTGCTACTGTTACT 58.745 41.667 0.00 0.00 40.48 2.24
217 218 5.564048 ACTACTGCTACTGCTACTGTTAC 57.436 43.478 0.00 0.00 40.48 2.50
218 219 6.413052 ACTACTACTGCTACTGCTACTGTTA 58.587 40.000 0.00 0.00 40.48 2.41
219 220 5.254901 ACTACTACTGCTACTGCTACTGTT 58.745 41.667 0.00 0.00 40.48 3.16
220 221 4.846040 ACTACTACTGCTACTGCTACTGT 58.154 43.478 0.00 0.00 40.48 3.55
221 222 5.049954 GCTACTACTACTGCTACTGCTACTG 60.050 48.000 0.00 0.00 40.48 2.74
222 223 5.058490 GCTACTACTACTGCTACTGCTACT 58.942 45.833 0.00 0.00 40.48 2.57
223 224 4.815308 TGCTACTACTACTGCTACTGCTAC 59.185 45.833 0.00 0.00 40.48 3.58
224 225 5.032327 TGCTACTACTACTGCTACTGCTA 57.968 43.478 0.00 0.00 40.48 3.49
225 226 3.880490 CTGCTACTACTACTGCTACTGCT 59.120 47.826 0.00 0.00 40.48 4.24
226 227 3.549221 GCTGCTACTACTACTGCTACTGC 60.549 52.174 0.00 0.00 40.20 4.40
227 228 3.628032 TGCTGCTACTACTACTGCTACTG 59.372 47.826 0.00 0.00 0.00 2.74
233 234 2.797792 GCTGCTGCTGCTACTACTACTG 60.798 54.545 22.10 0.00 40.48 2.74
248 249 0.672711 TCTTGCTACTGCTGCTGCTG 60.673 55.000 18.66 18.66 42.70 4.41
257 258 8.668353 TGTTTGCTATTCTTTATCTTGCTACTG 58.332 33.333 0.00 0.00 0.00 2.74
346 574 1.340697 GGGTAGACAAAGGCCCGAATT 60.341 52.381 0.00 0.00 0.00 2.17
347 575 0.255033 GGGTAGACAAAGGCCCGAAT 59.745 55.000 0.00 0.00 0.00 3.34
374 1574 0.036294 AAAGAGTAAGTGAGCCGGCC 60.036 55.000 26.15 15.80 0.00 6.13
393 1593 1.855213 GCACATGCAAGCGAACCAGA 61.855 55.000 0.00 0.00 41.59 3.86
415 1615 3.456431 TTGCAACGTTTGTCGCCCG 62.456 57.895 0.00 0.00 44.19 6.13
416 1616 1.942223 GTTGCAACGTTTGTCGCCC 60.942 57.895 14.90 0.00 44.19 6.13
428 1629 0.167908 CTATTTGCCGCTCGTTGCAA 59.832 50.000 0.00 0.00 45.12 4.08
430 1631 1.062525 CCTATTTGCCGCTCGTTGC 59.937 57.895 0.00 0.00 38.57 4.17
449 1650 6.147864 TGCCTGCTAATAATCATGGAAAAC 57.852 37.500 0.00 0.00 0.00 2.43
505 1707 1.712401 CGGTCGACGGGTTTAAATGA 58.288 50.000 14.86 0.00 39.42 2.57
517 1719 1.436983 GAATTCATGGGCCGGTCGAC 61.437 60.000 7.13 7.13 0.00 4.20
520 1722 2.186826 CCGAATTCATGGGCCGGTC 61.187 63.158 1.90 0.00 35.83 4.79
547 1749 0.389037 CTCAGCACACTAAGCGCAGA 60.389 55.000 11.47 0.00 37.01 4.26
555 1757 3.327757 ACAGGAATTTCCTCAGCACACTA 59.672 43.478 15.24 0.00 45.66 2.74
561 1763 1.815003 CCACACAGGAATTTCCTCAGC 59.185 52.381 15.24 0.00 45.66 4.26
574 1776 0.750546 CCTCATGATGGGCCACACAG 60.751 60.000 9.28 8.83 0.00 3.66
577 1779 2.276409 GCCTCATGATGGGCCACA 59.724 61.111 9.28 10.07 42.30 4.17
607 1809 1.465777 GAAACACGTTTGGTATCCCGG 59.534 52.381 0.00 0.00 32.11 5.73
617 1819 5.221303 TGCTACTACTACAGGAAACACGTTT 60.221 40.000 0.00 0.00 35.14 3.60
619 1821 3.822735 TGCTACTACTACAGGAAACACGT 59.177 43.478 0.00 0.00 0.00 4.49
620 1822 4.413087 CTGCTACTACTACAGGAAACACG 58.587 47.826 0.00 0.00 0.00 4.49
621 1823 4.082136 AGCTGCTACTACTACAGGAAACAC 60.082 45.833 0.00 0.00 31.94 3.32
622 1824 4.082190 CAGCTGCTACTACTACAGGAAACA 60.082 45.833 0.00 0.00 31.94 2.83
623 1825 4.425520 CAGCTGCTACTACTACAGGAAAC 58.574 47.826 0.00 0.00 31.94 2.78
635 2247 3.942829 TGTTCTTATTGCAGCTGCTACT 58.057 40.909 36.61 23.28 42.66 2.57
644 2256 6.862209 AGTTGTTGTTCTTGTTCTTATTGCA 58.138 32.000 0.00 0.00 0.00 4.08
658 2270 6.477688 TGCTGTTGTAGTACTAGTTGTTGTTC 59.522 38.462 1.87 0.00 0.00 3.18
670 2282 3.251571 GCTGGTAGTGCTGTTGTAGTAC 58.748 50.000 0.00 0.00 41.74 2.73
681 2293 2.343101 TGTTATTGTCGCTGGTAGTGC 58.657 47.619 0.00 0.00 0.00 4.40
685 2297 4.106909 CGTACATGTTATTGTCGCTGGTA 58.893 43.478 2.30 0.00 0.00 3.25
690 2302 3.000925 CCTTCCGTACATGTTATTGTCGC 59.999 47.826 2.30 0.00 0.00 5.19
694 2306 9.537192 TTATTACTCCTTCCGTACATGTTATTG 57.463 33.333 2.30 0.00 0.00 1.90
703 2315 8.996271 CCCAAATTATTATTACTCCTTCCGTAC 58.004 37.037 0.00 0.00 0.00 3.67
732 2431 4.454504 TCAAGGACGCAAGGAATAAGTTTC 59.545 41.667 0.00 0.00 46.39 2.78
743 2442 1.737363 GCTACCTCTCAAGGACGCAAG 60.737 57.143 0.00 0.00 46.67 4.01
808 2621 0.099436 GTCCAAAGCATGCATCGGTC 59.901 55.000 21.98 10.31 0.00 4.79
810 2623 0.742505 ATGTCCAAAGCATGCATCGG 59.257 50.000 21.98 16.17 0.00 4.18
848 2661 0.604073 TTCGATGTGTTAGCCCGTCA 59.396 50.000 0.00 0.00 0.00 4.35
869 2682 0.458260 TCATCATGCAATGCAGGTGC 59.542 50.000 19.49 16.30 46.21 5.01
870 2683 3.057526 CCTATCATCATGCAATGCAGGTG 60.058 47.826 19.49 15.92 46.21 4.00
871 2684 3.154710 CCTATCATCATGCAATGCAGGT 58.845 45.455 19.49 4.55 46.21 4.00
873 2686 3.818773 TCACCTATCATCATGCAATGCAG 59.181 43.478 14.98 6.21 46.21 4.41
874 2687 3.822940 TCACCTATCATCATGCAATGCA 58.177 40.909 11.44 11.44 46.21 3.96
875 2688 4.841443 TTCACCTATCATCATGCAATGC 57.159 40.909 0.00 0.00 46.21 3.56
877 2690 7.649533 TTTCTTTCACCTATCATCATGCAAT 57.350 32.000 0.00 0.00 0.00 3.56
898 2711 3.417645 GCGTTCGATTTGTGTGACTTTTC 59.582 43.478 0.00 0.00 0.00 2.29
903 2716 1.658968 GTGCGTTCGATTTGTGTGAC 58.341 50.000 0.00 0.00 0.00 3.67
918 2731 1.000274 TGTATGATGGATCGAGGTGCG 60.000 52.381 0.00 0.00 42.69 5.34
950 2763 4.023450 ACGTATATATGGCCATATCGACCG 60.023 45.833 34.40 30.89 35.71 4.79
955 2768 9.031360 CAACAAGTACGTATATATGGCCATATC 57.969 37.037 36.10 22.97 35.71 1.63
972 2804 3.062639 CGATGGATCAGTGCAACAAGTAC 59.937 47.826 0.00 0.00 41.43 2.73
994 2826 0.527600 TGTGATGCGATAGTGCGACC 60.528 55.000 0.00 0.00 37.81 4.79
995 2827 1.256376 CTTGTGATGCGATAGTGCGAC 59.744 52.381 0.00 0.00 37.81 5.19
996 2828 1.559831 CTTGTGATGCGATAGTGCGA 58.440 50.000 0.00 0.00 37.81 5.10
997 2829 0.042708 GCTTGTGATGCGATAGTGCG 60.043 55.000 0.00 0.00 37.81 5.34
998 2830 1.009078 TGCTTGTGATGCGATAGTGC 58.991 50.000 0.00 0.00 39.35 4.40
999 2831 2.416202 TGTTGCTTGTGATGCGATAGTG 59.584 45.455 0.00 0.00 39.35 2.74
1000 2832 2.674852 CTGTTGCTTGTGATGCGATAGT 59.325 45.455 0.00 0.00 39.35 2.12
1001 2833 2.538333 GCTGTTGCTTGTGATGCGATAG 60.538 50.000 0.00 0.00 36.52 2.08
1002 2834 1.398041 GCTGTTGCTTGTGATGCGATA 59.602 47.619 0.00 0.00 36.03 2.92
1003 2835 0.169672 GCTGTTGCTTGTGATGCGAT 59.830 50.000 0.00 0.00 36.03 4.58
1020 2852 1.675552 GTGTGGTGTGGTTTAGTGCT 58.324 50.000 0.00 0.00 0.00 4.40
1066 2898 1.751351 TCTCACCTCTAGACGCCATTG 59.249 52.381 0.00 0.00 0.00 2.82
1144 2976 7.880195 GGTGATGGAGTAACTAATGCAGAATAT 59.120 37.037 0.00 0.00 0.00 1.28
1145 2977 7.071196 AGGTGATGGAGTAACTAATGCAGAATA 59.929 37.037 0.00 0.00 0.00 1.75
1146 2978 6.058183 GGTGATGGAGTAACTAATGCAGAAT 58.942 40.000 0.00 0.00 0.00 2.40
1147 2979 5.189736 AGGTGATGGAGTAACTAATGCAGAA 59.810 40.000 0.00 0.00 0.00 3.02
1157 2989 6.043854 AGAAGAAGAAGGTGATGGAGTAAC 57.956 41.667 0.00 0.00 0.00 2.50
1168 3000 6.262049 GCAAAGAAGAAGAAGAAGAAGAAGGT 59.738 38.462 0.00 0.00 0.00 3.50
1205 3037 5.403766 GCCAAGATTGATCATCAGTACGTAG 59.596 44.000 0.00 0.00 33.75 3.51
1242 3075 8.595362 ATCCGTGAGATCAACATCCTATATAA 57.405 34.615 0.00 0.00 0.00 0.98
1364 3197 2.032071 GAGTTGTGTCCCGTGGGG 59.968 66.667 4.81 0.00 46.11 4.96
1377 3210 0.244178 GACCTCGGCGAAGAAGAGTT 59.756 55.000 13.21 0.00 32.28 3.01
1449 3282 6.134754 AGGAACTAGGATTACGTACTGGATT 58.865 40.000 0.00 0.00 36.02 3.01
1472 3305 2.165167 TGGGCATGCAAAGAGAGAAAG 58.835 47.619 21.36 0.00 0.00 2.62
1486 3319 5.704354 TGGATACTCAAAATGTATGGGCAT 58.296 37.500 0.00 0.00 31.55 4.40
1487 3320 5.122707 TGGATACTCAAAATGTATGGGCA 57.877 39.130 0.00 0.00 31.55 5.36
1520 3353 6.481644 TCCAAAATTGCAAATAACCAAGTGTC 59.518 34.615 1.71 0.00 0.00 3.67
1523 3356 6.072563 GCATCCAAAATTGCAAATAACCAAGT 60.073 34.615 1.71 0.00 38.72 3.16
1539 3372 1.702182 TGACCAAGCTGCATCCAAAA 58.298 45.000 1.02 0.00 0.00 2.44
1544 3377 2.223782 TGTTTGTTGACCAAGCTGCATC 60.224 45.455 1.02 0.00 35.49 3.91
1573 3406 0.733150 GGCAGATACCGGAGCAAAAC 59.267 55.000 9.46 0.00 0.00 2.43
1591 3424 2.700773 GCCGCTTGCTTTAGGGTGG 61.701 63.158 0.00 0.00 36.87 4.61
1597 3430 0.313672 CAAAGGTGCCGCTTGCTTTA 59.686 50.000 0.00 0.00 42.00 1.85
1628 3461 1.133513 TGGTGGGTGCTTCATTCACTT 60.134 47.619 0.00 0.00 34.97 3.16
1644 3477 2.185004 ATTCGGAGTGGAAGTTGGTG 57.815 50.000 0.00 0.00 0.00 4.17
1775 3646 2.106511 TGAGCCAACAAGCCTACTCTTT 59.893 45.455 0.00 0.00 0.00 2.52
1777 3648 1.352083 TGAGCCAACAAGCCTACTCT 58.648 50.000 0.00 0.00 0.00 3.24
1778 3649 2.185004 TTGAGCCAACAAGCCTACTC 57.815 50.000 0.00 0.00 0.00 2.59
1817 3688 4.760878 CCAGGAAGGCTACTCTTTCTAAC 58.239 47.826 0.00 0.00 31.16 2.34
1855 3726 8.180267 CAGCCATCAAGTCTAGTCTTATTTTTG 58.820 37.037 1.78 0.00 0.00 2.44
1931 3804 5.885449 AATAAGTGAGGCTCTGCTCTTAT 57.115 39.130 16.72 18.10 32.02 1.73
1998 3871 1.203112 AGAGGAAGAGAGTGCAGGACA 60.203 52.381 0.00 0.00 0.00 4.02
2002 3875 3.511146 AGAGAAAGAGGAAGAGAGTGCAG 59.489 47.826 0.00 0.00 0.00 4.41
2003 3876 3.505386 AGAGAAAGAGGAAGAGAGTGCA 58.495 45.455 0.00 0.00 0.00 4.57
2013 3886 4.536090 AGAGAGTGAGAGAGAGAAAGAGGA 59.464 45.833 0.00 0.00 0.00 3.71
2014 3887 4.848357 AGAGAGTGAGAGAGAGAAAGAGG 58.152 47.826 0.00 0.00 0.00 3.69
2015 3888 5.738909 AGAGAGAGTGAGAGAGAGAAAGAG 58.261 45.833 0.00 0.00 0.00 2.85
2016 3889 5.485353 AGAGAGAGAGTGAGAGAGAGAAAGA 59.515 44.000 0.00 0.00 0.00 2.52
2017 3890 5.738909 AGAGAGAGAGTGAGAGAGAGAAAG 58.261 45.833 0.00 0.00 0.00 2.62
2018 3891 5.762179 AGAGAGAGAGTGAGAGAGAGAAA 57.238 43.478 0.00 0.00 0.00 2.52
2019 3892 5.762179 AAGAGAGAGAGTGAGAGAGAGAA 57.238 43.478 0.00 0.00 0.00 2.87
2020 3893 5.958380 ACTAAGAGAGAGAGTGAGAGAGAGA 59.042 44.000 0.00 0.00 0.00 3.10
2021 3894 6.227298 ACTAAGAGAGAGAGTGAGAGAGAG 57.773 45.833 0.00 0.00 0.00 3.20
2040 3913 2.499197 TCGCCACTGCATTTCAACTAA 58.501 42.857 0.00 0.00 37.32 2.24
2058 3931 5.636837 ACCAATTTTGTAATTCGTCCATCG 58.363 37.500 0.00 0.00 41.41 3.84
2142 4016 7.985634 TCAAAAATTCAAAGTGCTTGACTAC 57.014 32.000 0.00 0.00 43.90 2.73
2241 4116 3.186613 GCGTCTTTCTAACTGAAACTGGG 59.813 47.826 0.00 0.00 39.50 4.45
2244 4119 4.691216 GGATGCGTCTTTCTAACTGAAACT 59.309 41.667 5.77 0.00 39.50 2.66
2262 4137 1.599518 TGACACACGGGTTGGATGC 60.600 57.895 0.00 0.00 0.00 3.91
2282 4157 5.428253 TGAGCACTAAATCCTTGGTATCAC 58.572 41.667 0.00 0.00 0.00 3.06
2306 4181 6.211584 AGAGCACTATGTTAACTTGAAGAGGA 59.788 38.462 7.22 0.00 0.00 3.71
2412 4287 4.390603 TGCTCAACATTTGTGTCGGTATAC 59.609 41.667 0.00 0.00 0.00 1.47
2600 4475 8.197988 ACCTATAACTCTTGCGATAAAAACAG 57.802 34.615 0.00 0.00 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.