Multiple sequence alignment - TraesCS7A01G568800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G568800 chr7A 100.000 3790 0 0 1 3790 736434528 736430739 0.000000e+00 6999.0
1 TraesCS7A01G568800 chr7A 88.175 389 24 10 3398 3782 682819557 682819187 9.660000e-121 444.0
2 TraesCS7A01G568800 chr7A 87.179 78 10 0 2610 2687 735867252 735867175 5.210000e-14 89.8
3 TraesCS7A01G568800 chr7D 91.704 1989 57 35 1845 3790 632007958 632009881 0.000000e+00 2660.0
4 TraesCS7A01G568800 chr7D 89.794 970 49 23 657 1617 632006717 632007645 0.000000e+00 1197.0
5 TraesCS7A01G568800 chr7D 85.041 488 48 16 2071 2550 632025258 632025728 1.230000e-129 473.0
6 TraesCS7A01G568800 chr7D 99.324 148 1 0 1676 1823 632007745 632007892 6.240000e-68 268.0
7 TraesCS7A01G568800 chr7D 79.091 220 23 14 3165 3376 632031814 632032018 3.070000e-26 130.0
8 TraesCS7A01G568800 chr7D 84.328 134 14 5 2557 2689 632089816 632089943 1.430000e-24 124.0
9 TraesCS7A01G568800 chr7B 79.608 1378 130 70 1894 3225 743705447 743706719 0.000000e+00 848.0
10 TraesCS7A01G568800 chr7B 84.565 758 37 34 612 1352 743620688 743621382 0.000000e+00 678.0
11 TraesCS7A01G568800 chr7B 84.169 638 61 24 2072 2697 743622495 743623104 1.960000e-162 582.0
12 TraesCS7A01G568800 chr7B 85.027 561 54 15 1274 1822 743704688 743705230 9.260000e-151 544.0
13 TraesCS7A01G568800 chr7B 79.636 825 78 33 2583 3376 17502638 17501873 9.390000e-141 510.0
14 TraesCS7A01G568800 chr7B 87.918 389 25 11 3398 3782 726416171 726416541 4.490000e-119 438.0
15 TraesCS7A01G568800 chr7B 79.906 637 70 26 2759 3376 744236815 744237412 7.570000e-112 414.0
16 TraesCS7A01G568800 chr7B 79.074 583 61 34 2821 3376 744332604 744332056 1.010000e-90 344.0
17 TraesCS7A01G568800 chr7B 93.304 224 15 0 1352 1575 743621472 743621695 7.850000e-87 331.0
18 TraesCS7A01G568800 chr7B 95.890 146 6 0 1677 1822 743621864 743622009 1.760000e-58 237.0
19 TraesCS7A01G568800 chr7B 85.393 89 10 1 166 251 743620284 743620372 5.210000e-14 89.8
20 TraesCS7A01G568800 chr1D 89.203 389 20 10 3398 3782 11506651 11506281 2.060000e-127 466.0
21 TraesCS7A01G568800 chr6A 88.175 389 24 11 3398 3782 96082509 96082139 9.660000e-121 444.0
22 TraesCS7A01G568800 chr2A 88.175 389 24 10 3398 3782 660989066 660989436 9.660000e-121 444.0
23 TraesCS7A01G568800 chr2A 87.918 389 25 10 3398 3782 605512180 605512550 4.490000e-119 438.0
24 TraesCS7A01G568800 chr4A 87.661 389 26 10 3398 3782 187593668 187594038 2.090000e-117 433.0
25 TraesCS7A01G568800 chr4A 87.692 390 24 15 3398 3782 690440574 690440204 2.090000e-117 433.0
26 TraesCS7A01G568800 chr4D 87.404 389 29 10 3397 3782 505945162 505945533 2.710000e-116 429.0
27 TraesCS7A01G568800 chr6B 80.376 479 71 15 2071 2540 694654604 694655068 3.630000e-90 342.0
28 TraesCS7A01G568800 chr6B 92.857 210 15 0 1366 1575 694653544 694653753 4.760000e-79 305.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G568800 chr7A 736430739 736434528 3789 True 6999.00 6999 100.000000 1 3790 1 chr7A.!!$R3 3789
1 TraesCS7A01G568800 chr7D 632006717 632009881 3164 False 1375.00 2660 93.607333 657 3790 3 chr7D.!!$F4 3133
2 TraesCS7A01G568800 chr7B 743704688 743706719 2031 False 696.00 848 82.317500 1274 3225 2 chr7B.!!$F4 1951
3 TraesCS7A01G568800 chr7B 17501873 17502638 765 True 510.00 510 79.636000 2583 3376 1 chr7B.!!$R1 793
4 TraesCS7A01G568800 chr7B 744236815 744237412 597 False 414.00 414 79.906000 2759 3376 1 chr7B.!!$F2 617
5 TraesCS7A01G568800 chr7B 743620284 743623104 2820 False 383.56 678 88.664200 166 2697 5 chr7B.!!$F3 2531
6 TraesCS7A01G568800 chr7B 744332056 744332604 548 True 344.00 344 79.074000 2821 3376 1 chr7B.!!$R2 555
7 TraesCS7A01G568800 chr6B 694653544 694655068 1524 False 323.50 342 86.616500 1366 2540 2 chr6B.!!$F1 1174

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
519 557 0.033920 CAGCTAGATGTATGCCGGCA 59.966 55.0 34.8 34.8 0.0 5.69 F
566 605 0.040157 CTGTTGGTGTTGATGCCGTG 60.040 55.0 0.0 0.0 0.0 4.94 F
2233 3183 0.178068 CTACCGCTGCCAACCTATGT 59.822 55.0 0.0 0.0 0.0 2.29 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2456 3421 0.039074 TAACCCAAAACGGCATTGCG 60.039 50.00 1.91 0.85 0.0 4.85 R
2461 3426 3.637229 TCAAGATTTAACCCAAAACGGCA 59.363 39.13 0.00 0.00 0.0 5.69 R
3525 4567 0.037590 TCATGCGCCTGGGTTTAACT 59.962 50.00 12.90 0.00 0.0 2.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.400928 AGCCTCCTCCTGCTGCTG 61.401 66.667 0.00 0.00 36.23 4.41
19 20 3.400928 CCTCCTCCTGCTGCTGCT 61.401 66.667 17.00 0.00 40.48 4.24
20 21 2.125065 CTCCTCCTGCTGCTGCTG 60.125 66.667 17.00 15.58 40.48 4.41
21 22 4.405671 TCCTCCTGCTGCTGCTGC 62.406 66.667 22.51 22.51 40.48 5.25
22 23 4.411981 CCTCCTGCTGCTGCTGCT 62.412 66.667 27.67 0.00 40.48 4.24
23 24 3.128188 CTCCTGCTGCTGCTGCTG 61.128 66.667 27.67 25.97 40.48 4.41
29 30 3.826754 CTGCTGCTGCTGCCCATG 61.827 66.667 25.44 11.45 40.48 3.66
30 31 4.354162 TGCTGCTGCTGCCCATGA 62.354 61.111 25.44 6.71 40.48 3.07
31 32 2.833582 GCTGCTGCTGCCCATGAT 60.834 61.111 19.30 0.00 38.71 2.45
32 33 1.527611 GCTGCTGCTGCCCATGATA 60.528 57.895 19.30 0.00 38.71 2.15
33 34 1.105167 GCTGCTGCTGCCCATGATAA 61.105 55.000 19.30 0.00 38.71 1.75
34 35 1.617322 CTGCTGCTGCCCATGATAAT 58.383 50.000 13.47 0.00 38.71 1.28
35 36 1.269723 CTGCTGCTGCCCATGATAATG 59.730 52.381 13.47 0.00 38.71 1.90
36 37 1.133730 TGCTGCTGCCCATGATAATGA 60.134 47.619 13.47 0.00 38.71 2.57
37 38 1.540267 GCTGCTGCCCATGATAATGAG 59.460 52.381 3.85 0.00 0.00 2.90
38 39 2.160205 CTGCTGCCCATGATAATGAGG 58.840 52.381 0.00 0.00 0.00 3.86
39 40 1.776063 TGCTGCCCATGATAATGAGGA 59.224 47.619 0.00 0.00 0.00 3.71
40 41 2.377531 TGCTGCCCATGATAATGAGGAT 59.622 45.455 0.00 0.00 0.00 3.24
41 42 2.753452 GCTGCCCATGATAATGAGGATG 59.247 50.000 0.00 0.00 0.00 3.51
42 43 3.560668 GCTGCCCATGATAATGAGGATGA 60.561 47.826 0.00 0.00 0.00 2.92
43 44 4.856509 CTGCCCATGATAATGAGGATGAT 58.143 43.478 0.00 0.00 0.00 2.45
44 45 4.595986 TGCCCATGATAATGAGGATGATG 58.404 43.478 0.00 0.00 0.00 3.07
45 46 4.290196 TGCCCATGATAATGAGGATGATGA 59.710 41.667 0.00 0.00 0.00 2.92
46 47 4.882427 GCCCATGATAATGAGGATGATGAG 59.118 45.833 0.00 0.00 0.00 2.90
47 48 5.437946 CCCATGATAATGAGGATGATGAGG 58.562 45.833 0.00 0.00 0.00 3.86
48 49 5.191124 CCCATGATAATGAGGATGATGAGGA 59.809 44.000 0.00 0.00 0.00 3.71
49 50 6.126449 CCCATGATAATGAGGATGATGAGGAT 60.126 42.308 0.00 0.00 0.00 3.24
50 51 6.768381 CCATGATAATGAGGATGATGAGGATG 59.232 42.308 0.00 0.00 0.00 3.51
51 52 7.365652 CCATGATAATGAGGATGATGAGGATGA 60.366 40.741 0.00 0.00 0.00 2.92
52 53 6.944096 TGATAATGAGGATGATGAGGATGAC 58.056 40.000 0.00 0.00 0.00 3.06
53 54 4.637387 AATGAGGATGATGAGGATGACC 57.363 45.455 0.00 0.00 0.00 4.02
54 55 3.050523 TGAGGATGATGAGGATGACCA 57.949 47.619 0.00 0.00 38.94 4.02
55 56 3.595021 TGAGGATGATGAGGATGACCAT 58.405 45.455 0.00 0.00 38.94 3.55
56 57 3.326880 TGAGGATGATGAGGATGACCATG 59.673 47.826 0.00 0.00 38.94 3.66
57 58 3.581770 GAGGATGATGAGGATGACCATGA 59.418 47.826 0.00 0.00 38.94 3.07
58 59 3.583526 AGGATGATGAGGATGACCATGAG 59.416 47.826 0.00 0.00 38.94 2.90
59 60 3.307550 GGATGATGAGGATGACCATGAGG 60.308 52.174 0.00 0.00 42.21 3.86
60 61 3.050523 TGATGAGGATGACCATGAGGA 57.949 47.619 0.00 0.00 38.69 3.71
61 62 2.970640 TGATGAGGATGACCATGAGGAG 59.029 50.000 0.00 0.00 38.69 3.69
62 63 1.798626 TGAGGATGACCATGAGGAGG 58.201 55.000 0.00 0.00 38.69 4.30
63 64 1.291939 TGAGGATGACCATGAGGAGGA 59.708 52.381 0.00 0.00 38.69 3.71
64 65 1.969923 GAGGATGACCATGAGGAGGAG 59.030 57.143 0.00 0.00 38.69 3.69
65 66 1.055040 GGATGACCATGAGGAGGAGG 58.945 60.000 0.00 0.00 38.69 4.30
66 67 1.055040 GATGACCATGAGGAGGAGGG 58.945 60.000 0.00 0.00 38.69 4.30
67 68 1.059006 ATGACCATGAGGAGGAGGGC 61.059 60.000 0.00 0.00 38.69 5.19
68 69 1.690633 GACCATGAGGAGGAGGGCA 60.691 63.158 0.00 0.00 38.69 5.36
69 70 1.229951 ACCATGAGGAGGAGGGCAA 60.230 57.895 0.00 0.00 38.69 4.52
70 71 1.277580 ACCATGAGGAGGAGGGCAAG 61.278 60.000 0.00 0.00 38.69 4.01
71 72 0.984961 CCATGAGGAGGAGGGCAAGA 60.985 60.000 0.00 0.00 36.89 3.02
72 73 0.914644 CATGAGGAGGAGGGCAAGAA 59.085 55.000 0.00 0.00 0.00 2.52
73 74 0.915364 ATGAGGAGGAGGGCAAGAAC 59.085 55.000 0.00 0.00 0.00 3.01
74 75 0.473694 TGAGGAGGAGGGCAAGAACA 60.474 55.000 0.00 0.00 0.00 3.18
75 76 0.035915 GAGGAGGAGGGCAAGAACAC 60.036 60.000 0.00 0.00 0.00 3.32
76 77 0.768221 AGGAGGAGGGCAAGAACACA 60.768 55.000 0.00 0.00 0.00 3.72
77 78 0.606673 GGAGGAGGGCAAGAACACAC 60.607 60.000 0.00 0.00 0.00 3.82
78 79 0.606673 GAGGAGGGCAAGAACACACC 60.607 60.000 0.00 0.00 0.00 4.16
79 80 1.150536 GGAGGGCAAGAACACACCA 59.849 57.895 0.00 0.00 0.00 4.17
80 81 0.251341 GGAGGGCAAGAACACACCAT 60.251 55.000 0.00 0.00 0.00 3.55
81 82 1.168714 GAGGGCAAGAACACACCATC 58.831 55.000 0.00 0.00 0.00 3.51
82 83 0.478072 AGGGCAAGAACACACCATCA 59.522 50.000 0.00 0.00 0.00 3.07
83 84 1.076024 AGGGCAAGAACACACCATCAT 59.924 47.619 0.00 0.00 0.00 2.45
84 85 1.474077 GGGCAAGAACACACCATCATC 59.526 52.381 0.00 0.00 0.00 2.92
85 86 1.131126 GGCAAGAACACACCATCATCG 59.869 52.381 0.00 0.00 0.00 3.84
86 87 1.806542 GCAAGAACACACCATCATCGT 59.193 47.619 0.00 0.00 0.00 3.73
87 88 2.159653 GCAAGAACACACCATCATCGTC 60.160 50.000 0.00 0.00 0.00 4.20
88 89 3.329386 CAAGAACACACCATCATCGTCT 58.671 45.455 0.00 0.00 0.00 4.18
89 90 3.685139 AGAACACACCATCATCGTCTT 57.315 42.857 0.00 0.00 0.00 3.01
90 91 3.329386 AGAACACACCATCATCGTCTTG 58.671 45.455 0.00 0.00 0.00 3.02
91 92 2.839486 ACACACCATCATCGTCTTGT 57.161 45.000 0.00 0.00 0.00 3.16
92 93 3.126001 ACACACCATCATCGTCTTGTT 57.874 42.857 0.00 0.00 0.00 2.83
93 94 4.265904 ACACACCATCATCGTCTTGTTA 57.734 40.909 0.00 0.00 0.00 2.41
94 95 4.245660 ACACACCATCATCGTCTTGTTAG 58.754 43.478 0.00 0.00 0.00 2.34
95 96 4.021456 ACACACCATCATCGTCTTGTTAGA 60.021 41.667 0.00 0.00 0.00 2.10
96 97 4.327357 CACACCATCATCGTCTTGTTAGAC 59.673 45.833 0.00 0.00 46.01 2.59
106 107 3.917329 TCTTGTTAGACAGACAGACGG 57.083 47.619 0.00 0.00 0.00 4.79
107 108 2.557056 TCTTGTTAGACAGACAGACGGG 59.443 50.000 0.00 0.00 0.00 5.28
108 109 0.601558 TGTTAGACAGACAGACGGGC 59.398 55.000 0.00 0.00 0.00 6.13
109 110 0.456312 GTTAGACAGACAGACGGGCG 60.456 60.000 0.00 0.00 0.00 6.13
110 111 2.209064 TTAGACAGACAGACGGGCGC 62.209 60.000 0.00 0.00 0.00 6.53
113 114 4.379243 CAGACAGACGGGCGCCTT 62.379 66.667 28.56 14.32 0.00 4.35
114 115 4.070552 AGACAGACGGGCGCCTTC 62.071 66.667 28.56 22.37 0.00 3.46
115 116 4.373116 GACAGACGGGCGCCTTCA 62.373 66.667 28.56 0.00 0.00 3.02
116 117 3.665675 GACAGACGGGCGCCTTCAT 62.666 63.158 28.56 14.80 0.00 2.57
117 118 3.197790 CAGACGGGCGCCTTCATG 61.198 66.667 28.56 16.50 0.00 3.07
118 119 3.706373 AGACGGGCGCCTTCATGT 61.706 61.111 28.56 16.81 0.00 3.21
119 120 3.499737 GACGGGCGCCTTCATGTG 61.500 66.667 28.56 9.94 0.00 3.21
122 123 3.443045 GGGCGCCTTCATGTGGTG 61.443 66.667 28.56 13.86 38.07 4.17
123 124 3.443045 GGCGCCTTCATGTGGTGG 61.443 66.667 22.15 7.22 35.76 4.61
124 125 4.120331 GCGCCTTCATGTGGTGGC 62.120 66.667 17.77 13.82 41.76 5.01
125 126 2.360350 CGCCTTCATGTGGTGGCT 60.360 61.111 14.93 0.00 42.90 4.75
126 127 1.973281 CGCCTTCATGTGGTGGCTT 60.973 57.895 14.93 0.00 42.90 4.35
127 128 1.588082 GCCTTCATGTGGTGGCTTG 59.412 57.895 11.57 0.00 41.92 4.01
128 129 1.880819 GCCTTCATGTGGTGGCTTGG 61.881 60.000 11.57 0.00 41.92 3.61
129 130 1.588082 CTTCATGTGGTGGCTTGGC 59.412 57.895 0.00 0.00 0.00 4.52
130 131 0.896940 CTTCATGTGGTGGCTTGGCT 60.897 55.000 0.00 0.00 0.00 4.75
131 132 0.469705 TTCATGTGGTGGCTTGGCTT 60.470 50.000 0.00 0.00 0.00 4.35
132 133 1.180456 TCATGTGGTGGCTTGGCTTG 61.180 55.000 0.00 0.00 0.00 4.01
133 134 1.909781 ATGTGGTGGCTTGGCTTGG 60.910 57.895 0.00 0.00 0.00 3.61
134 135 3.994853 GTGGTGGCTTGGCTTGGC 61.995 66.667 0.00 0.00 0.00 4.52
135 136 4.223125 TGGTGGCTTGGCTTGGCT 62.223 61.111 5.64 0.00 0.00 4.75
136 137 2.035626 GGTGGCTTGGCTTGGCTA 59.964 61.111 5.64 0.00 0.00 3.93
137 138 2.343426 GGTGGCTTGGCTTGGCTAC 61.343 63.158 5.64 0.00 38.82 3.58
138 139 1.303643 GTGGCTTGGCTTGGCTACT 60.304 57.895 0.00 0.00 37.06 2.57
139 140 1.303561 TGGCTTGGCTTGGCTACTG 60.304 57.895 5.64 0.00 0.00 2.74
140 141 1.303643 GGCTTGGCTTGGCTACTGT 60.304 57.895 0.00 0.00 0.00 3.55
141 142 1.589716 GGCTTGGCTTGGCTACTGTG 61.590 60.000 0.00 0.00 0.00 3.66
142 143 0.890996 GCTTGGCTTGGCTACTGTGT 60.891 55.000 0.00 0.00 0.00 3.72
143 144 0.877071 CTTGGCTTGGCTACTGTGTG 59.123 55.000 0.00 0.00 0.00 3.82
144 145 0.472044 TTGGCTTGGCTACTGTGTGA 59.528 50.000 0.00 0.00 0.00 3.58
145 146 0.250295 TGGCTTGGCTACTGTGTGAC 60.250 55.000 0.00 0.00 0.00 3.67
146 147 1.291877 GGCTTGGCTACTGTGTGACG 61.292 60.000 0.00 0.00 0.00 4.35
147 148 0.319555 GCTTGGCTACTGTGTGACGA 60.320 55.000 0.00 0.00 0.00 4.20
148 149 1.673033 GCTTGGCTACTGTGTGACGAT 60.673 52.381 0.00 0.00 0.00 3.73
149 150 1.995484 CTTGGCTACTGTGTGACGATG 59.005 52.381 0.00 0.00 0.00 3.84
150 151 0.246360 TGGCTACTGTGTGACGATGG 59.754 55.000 0.00 0.00 0.00 3.51
151 152 0.246635 GGCTACTGTGTGACGATGGT 59.753 55.000 0.00 0.00 0.00 3.55
152 153 1.350193 GCTACTGTGTGACGATGGTG 58.650 55.000 0.00 0.00 0.00 4.17
153 154 1.067846 GCTACTGTGTGACGATGGTGA 60.068 52.381 0.00 0.00 0.00 4.02
154 155 2.596452 CTACTGTGTGACGATGGTGAC 58.404 52.381 0.00 0.00 0.00 3.67
155 156 1.040646 ACTGTGTGACGATGGTGACT 58.959 50.000 0.00 0.00 30.95 3.41
156 157 1.269778 ACTGTGTGACGATGGTGACTG 60.270 52.381 0.00 0.00 30.95 3.51
157 158 0.599991 TGTGTGACGATGGTGACTGC 60.600 55.000 0.00 0.00 30.95 4.40
158 159 0.599991 GTGTGACGATGGTGACTGCA 60.600 55.000 0.00 0.00 30.95 4.41
159 160 0.599991 TGTGACGATGGTGACTGCAC 60.600 55.000 0.00 0.00 44.39 4.57
160 161 0.319900 GTGACGATGGTGACTGCACT 60.320 55.000 0.00 0.00 44.52 4.40
161 162 0.038251 TGACGATGGTGACTGCACTC 60.038 55.000 0.00 0.00 44.52 3.51
162 163 0.244994 GACGATGGTGACTGCACTCT 59.755 55.000 0.00 0.00 44.52 3.24
163 164 0.037882 ACGATGGTGACTGCACTCTG 60.038 55.000 0.00 0.00 44.52 3.35
164 165 0.037882 CGATGGTGACTGCACTCTGT 60.038 55.000 0.00 0.00 44.52 3.41
196 197 6.851965 AGGAAGGAAGGAGATAGTAGTAGT 57.148 41.667 0.00 0.00 0.00 2.73
197 198 6.607019 AGGAAGGAAGGAGATAGTAGTAGTG 58.393 44.000 0.00 0.00 0.00 2.74
198 199 5.242171 GGAAGGAAGGAGATAGTAGTAGTGC 59.758 48.000 0.00 0.00 0.00 4.40
200 201 3.502979 GGAAGGAGATAGTAGTAGTGCCG 59.497 52.174 0.00 0.00 0.00 5.69
206 207 4.581868 AGATAGTAGTAGTGCCGGATCTC 58.418 47.826 5.05 0.00 0.00 2.75
223 227 2.282407 TCTCGGTCGTCGTAATCATCA 58.718 47.619 0.00 0.00 40.32 3.07
232 236 5.798934 GTCGTCGTAATCATCAGTAACTTGT 59.201 40.000 0.00 0.00 0.00 3.16
255 259 8.696410 TGTATGTATGTATGTATGTATTGCCG 57.304 34.615 0.00 0.00 0.00 5.69
256 260 6.662414 ATGTATGTATGTATGTATTGCCGC 57.338 37.500 0.00 0.00 0.00 6.53
258 262 3.762407 TGTATGTATGTATTGCCGCCT 57.238 42.857 0.00 0.00 0.00 5.52
259 263 3.659786 TGTATGTATGTATTGCCGCCTC 58.340 45.455 0.00 0.00 0.00 4.70
260 264 2.185004 ATGTATGTATTGCCGCCTCC 57.815 50.000 0.00 0.00 0.00 4.30
264 268 4.547367 GTATTGCCGCCTCCGCCT 62.547 66.667 0.00 0.00 0.00 5.52
265 269 4.235762 TATTGCCGCCTCCGCCTC 62.236 66.667 0.00 0.00 0.00 4.70
290 294 4.329545 GCCTCCGCCTGTGGTTCA 62.330 66.667 0.00 0.00 0.00 3.18
291 295 2.429930 CCTCCGCCTGTGGTTCAA 59.570 61.111 0.00 0.00 0.00 2.69
292 296 1.672356 CCTCCGCCTGTGGTTCAAG 60.672 63.158 0.00 0.00 0.00 3.02
293 297 1.672356 CTCCGCCTGTGGTTCAAGG 60.672 63.158 0.00 0.00 0.00 3.61
312 316 8.678199 GTTCAAGGGGTAAATAATGAAGAGAAG 58.322 37.037 0.00 0.00 0.00 2.85
326 330 4.070552 GAAGGGACGCGCCTCACT 62.071 66.667 5.73 5.25 36.66 3.41
332 370 0.739813 GGACGCGCCTCACTTGTAAT 60.740 55.000 5.73 0.00 0.00 1.89
345 383 9.104965 GCCTCACTTGTAATGTAATGTAATGTA 57.895 33.333 0.00 0.00 0.00 2.29
358 396 8.279800 TGTAATGTAATGTAATGCAATACGAGC 58.720 33.333 7.41 0.00 36.51 5.03
361 399 7.078011 TGTAATGTAATGCAATACGAGCAAA 57.922 32.000 7.41 0.00 46.27 3.68
362 400 7.186128 TGTAATGTAATGCAATACGAGCAAAG 58.814 34.615 7.41 0.00 46.27 2.77
363 401 6.435430 AATGTAATGCAATACGAGCAAAGA 57.565 33.333 7.41 0.00 46.27 2.52
364 402 5.871465 TGTAATGCAATACGAGCAAAGAA 57.129 34.783 7.41 0.00 46.27 2.52
366 404 5.641636 TGTAATGCAATACGAGCAAAGAAGA 59.358 36.000 7.41 0.00 46.27 2.87
368 406 3.925379 TGCAATACGAGCAAAGAAGAGA 58.075 40.909 0.00 0.00 39.39 3.10
369 407 3.928992 TGCAATACGAGCAAAGAAGAGAG 59.071 43.478 0.00 0.00 39.39 3.20
370 408 3.242252 GCAATACGAGCAAAGAAGAGAGC 60.242 47.826 0.00 0.00 0.00 4.09
371 409 3.876274 ATACGAGCAAAGAAGAGAGCA 57.124 42.857 0.00 0.00 0.00 4.26
372 410 2.077413 ACGAGCAAAGAAGAGAGCAG 57.923 50.000 0.00 0.00 0.00 4.24
373 411 1.615883 ACGAGCAAAGAAGAGAGCAGA 59.384 47.619 0.00 0.00 0.00 4.26
374 412 1.991965 CGAGCAAAGAAGAGAGCAGAC 59.008 52.381 0.00 0.00 0.00 3.51
375 413 1.991965 GAGCAAAGAAGAGAGCAGACG 59.008 52.381 0.00 0.00 0.00 4.18
376 414 1.342819 AGCAAAGAAGAGAGCAGACGT 59.657 47.619 0.00 0.00 0.00 4.34
377 415 1.458827 GCAAAGAAGAGAGCAGACGTG 59.541 52.381 0.00 0.00 0.00 4.49
378 416 2.864097 GCAAAGAAGAGAGCAGACGTGA 60.864 50.000 0.00 0.00 0.00 4.35
379 417 3.384668 CAAAGAAGAGAGCAGACGTGAA 58.615 45.455 0.00 0.00 0.00 3.18
380 418 3.296322 AAGAAGAGAGCAGACGTGAAG 57.704 47.619 0.00 0.00 0.00 3.02
381 419 1.543802 AGAAGAGAGCAGACGTGAAGG 59.456 52.381 0.00 0.00 0.00 3.46
382 420 0.037790 AAGAGAGCAGACGTGAAGGC 60.038 55.000 0.00 0.00 0.00 4.35
383 421 1.181741 AGAGAGCAGACGTGAAGGCA 61.182 55.000 0.00 0.00 0.00 4.75
384 422 0.735632 GAGAGCAGACGTGAAGGCAG 60.736 60.000 0.00 0.00 0.00 4.85
385 423 2.358003 AGCAGACGTGAAGGCAGC 60.358 61.111 0.00 0.00 41.23 5.25
386 424 2.358003 GCAGACGTGAAGGCAGCT 60.358 61.111 0.00 0.00 37.41 4.24
387 425 1.079819 GCAGACGTGAAGGCAGCTA 60.080 57.895 0.00 0.00 37.41 3.32
388 426 0.460987 GCAGACGTGAAGGCAGCTAT 60.461 55.000 0.00 0.00 37.41 2.97
389 427 1.284657 CAGACGTGAAGGCAGCTATG 58.715 55.000 0.00 0.00 0.00 2.23
390 428 0.898320 AGACGTGAAGGCAGCTATGT 59.102 50.000 0.00 0.00 0.00 2.29
391 429 1.002366 GACGTGAAGGCAGCTATGTG 58.998 55.000 0.00 0.00 0.00 3.21
392 430 0.321671 ACGTGAAGGCAGCTATGTGT 59.678 50.000 0.00 0.00 0.00 3.72
393 431 1.270839 ACGTGAAGGCAGCTATGTGTT 60.271 47.619 0.00 0.00 0.00 3.32
394 432 1.129251 CGTGAAGGCAGCTATGTGTTG 59.871 52.381 0.00 0.00 0.00 3.33
395 433 2.426522 GTGAAGGCAGCTATGTGTTGA 58.573 47.619 0.00 0.00 0.00 3.18
396 434 2.160417 GTGAAGGCAGCTATGTGTTGAC 59.840 50.000 0.00 0.00 34.88 3.18
397 435 2.224499 TGAAGGCAGCTATGTGTTGACA 60.224 45.455 0.00 0.00 37.37 3.58
398 436 2.566833 AGGCAGCTATGTGTTGACAA 57.433 45.000 0.00 0.00 37.37 3.18
399 437 2.862541 AGGCAGCTATGTGTTGACAAA 58.137 42.857 0.00 0.00 37.37 2.83
400 438 3.221771 AGGCAGCTATGTGTTGACAAAA 58.778 40.909 0.00 0.00 37.37 2.44
401 439 3.636300 AGGCAGCTATGTGTTGACAAAAA 59.364 39.130 0.00 0.00 37.37 1.94
417 455 1.612676 AAAAAGGCGTCCTACCCAAC 58.387 50.000 0.00 0.00 31.13 3.77
418 456 0.769247 AAAAGGCGTCCTACCCAACT 59.231 50.000 0.00 0.00 31.13 3.16
419 457 0.769247 AAAGGCGTCCTACCCAACTT 59.231 50.000 0.00 0.00 31.13 2.66
420 458 0.769247 AAGGCGTCCTACCCAACTTT 59.231 50.000 0.00 0.00 31.13 2.66
421 459 0.036306 AGGCGTCCTACCCAACTTTG 59.964 55.000 0.00 0.00 28.47 2.77
422 460 3.333519 AGGCGTCCTACCCAACTTTGG 62.334 57.143 0.52 0.52 39.15 3.28
437 475 6.589830 CAACTTTGGAACCGATGTATAGAG 57.410 41.667 0.00 0.00 0.00 2.43
438 476 4.694339 ACTTTGGAACCGATGTATAGAGC 58.306 43.478 0.00 0.00 0.00 4.09
439 477 4.406003 ACTTTGGAACCGATGTATAGAGCT 59.594 41.667 0.00 0.00 0.00 4.09
440 478 4.322080 TTGGAACCGATGTATAGAGCTG 57.678 45.455 0.00 0.00 0.00 4.24
441 479 2.035961 TGGAACCGATGTATAGAGCTGC 59.964 50.000 0.00 0.00 0.00 5.25
442 480 2.035961 GGAACCGATGTATAGAGCTGCA 59.964 50.000 1.02 0.00 0.00 4.41
443 481 3.306364 GGAACCGATGTATAGAGCTGCAT 60.306 47.826 1.02 0.00 0.00 3.96
444 482 4.082190 GGAACCGATGTATAGAGCTGCATA 60.082 45.833 1.02 0.00 0.00 3.14
445 483 4.710423 ACCGATGTATAGAGCTGCATAG 57.290 45.455 1.02 0.00 0.00 2.23
446 484 4.336280 ACCGATGTATAGAGCTGCATAGA 58.664 43.478 1.02 0.00 0.00 1.98
447 485 4.156922 ACCGATGTATAGAGCTGCATAGAC 59.843 45.833 1.02 2.64 0.00 2.59
448 486 4.156739 CCGATGTATAGAGCTGCATAGACA 59.843 45.833 12.59 12.59 0.00 3.41
449 487 5.335976 CCGATGTATAGAGCTGCATAGACAA 60.336 44.000 13.73 2.24 27.98 3.18
450 488 6.328714 CGATGTATAGAGCTGCATAGACAAT 58.671 40.000 13.73 5.79 27.98 2.71
451 489 6.810676 CGATGTATAGAGCTGCATAGACAATT 59.189 38.462 13.73 2.39 27.98 2.32
452 490 7.970614 CGATGTATAGAGCTGCATAGACAATTA 59.029 37.037 13.73 0.00 27.98 1.40
453 491 9.645059 GATGTATAGAGCTGCATAGACAATTAA 57.355 33.333 13.73 0.00 27.98 1.40
455 493 9.830975 TGTATAGAGCTGCATAGACAATTAAAA 57.169 29.630 1.02 0.00 0.00 1.52
459 497 8.284945 AGAGCTGCATAGACAATTAAAAATCA 57.715 30.769 1.02 0.00 0.00 2.57
460 498 8.742777 AGAGCTGCATAGACAATTAAAAATCAA 58.257 29.630 1.02 0.00 0.00 2.57
461 499 9.525409 GAGCTGCATAGACAATTAAAAATCAAT 57.475 29.630 1.02 0.00 0.00 2.57
462 500 9.880157 AGCTGCATAGACAATTAAAAATCAATT 57.120 25.926 1.02 0.00 0.00 2.32
487 525 9.896263 TTACAAAATTTTCCAATTACTCGTACC 57.104 29.630 0.00 0.00 31.89 3.34
488 526 7.942990 ACAAAATTTTCCAATTACTCGTACCA 58.057 30.769 0.00 0.00 31.89 3.25
489 527 8.414778 ACAAAATTTTCCAATTACTCGTACCAA 58.585 29.630 0.00 0.00 31.89 3.67
490 528 9.418045 CAAAATTTTCCAATTACTCGTACCAAT 57.582 29.630 0.00 0.00 31.89 3.16
516 554 4.710423 ATACTCAGCTAGATGTATGCCG 57.290 45.455 8.04 0.00 0.00 5.69
517 555 1.615883 ACTCAGCTAGATGTATGCCGG 59.384 52.381 8.04 0.00 0.00 6.13
518 556 0.318441 TCAGCTAGATGTATGCCGGC 59.682 55.000 22.73 22.73 0.00 6.13
519 557 0.033920 CAGCTAGATGTATGCCGGCA 59.966 55.000 34.80 34.80 0.00 5.69
520 558 0.758734 AGCTAGATGTATGCCGGCAA 59.241 50.000 36.33 19.01 0.00 4.52
521 559 0.868406 GCTAGATGTATGCCGGCAAC 59.132 55.000 36.33 29.53 0.00 4.17
522 560 1.512926 CTAGATGTATGCCGGCAACC 58.487 55.000 36.33 26.23 0.00 3.77
523 561 0.107831 TAGATGTATGCCGGCAACCC 59.892 55.000 36.33 23.56 0.00 4.11
524 562 2.123897 ATGTATGCCGGCAACCCC 60.124 61.111 36.33 20.94 0.00 4.95
525 563 3.731766 ATGTATGCCGGCAACCCCC 62.732 63.158 36.33 19.09 0.00 5.40
526 564 4.123545 GTATGCCGGCAACCCCCT 62.124 66.667 36.33 19.01 0.00 4.79
527 565 2.367107 TATGCCGGCAACCCCCTA 60.367 61.111 36.33 17.78 0.00 3.53
528 566 2.448582 TATGCCGGCAACCCCCTAG 61.449 63.158 36.33 0.00 0.00 3.02
529 567 2.900269 TATGCCGGCAACCCCCTAGA 62.900 60.000 36.33 5.54 0.00 2.43
530 568 4.484872 GCCGGCAACCCCCTAGAC 62.485 72.222 24.80 0.00 0.00 2.59
531 569 2.687566 CCGGCAACCCCCTAGACT 60.688 66.667 0.00 0.00 0.00 3.24
532 570 2.298661 CCGGCAACCCCCTAGACTT 61.299 63.158 0.00 0.00 0.00 3.01
533 571 1.683441 CGGCAACCCCCTAGACTTT 59.317 57.895 0.00 0.00 0.00 2.66
534 572 0.676782 CGGCAACCCCCTAGACTTTG 60.677 60.000 0.00 0.00 0.00 2.77
535 573 0.965866 GGCAACCCCCTAGACTTTGC 60.966 60.000 8.83 8.83 41.50 3.68
536 574 0.965866 GCAACCCCCTAGACTTTGCC 60.966 60.000 0.00 0.00 37.24 4.52
547 585 1.177401 GACTTTGCCCCTGATCCAAC 58.823 55.000 0.00 0.00 0.00 3.77
563 602 1.269726 CCAACTGTTGGTGTTGATGCC 60.270 52.381 27.51 0.00 45.27 4.40
564 603 0.667993 AACTGTTGGTGTTGATGCCG 59.332 50.000 0.00 0.00 0.00 5.69
565 604 0.465460 ACTGTTGGTGTTGATGCCGT 60.465 50.000 0.00 0.00 0.00 5.68
566 605 0.040157 CTGTTGGTGTTGATGCCGTG 60.040 55.000 0.00 0.00 0.00 4.94
569 608 1.794151 TTGGTGTTGATGCCGTGCAG 61.794 55.000 4.90 0.00 43.65 4.41
586 626 1.990799 CAGCACGGACGTAAATCAGA 58.009 50.000 0.00 0.00 0.00 3.27
596 636 5.088739 GGACGTAAATCAGATGTTGCAAAG 58.911 41.667 0.00 0.00 0.00 2.77
597 637 4.475944 ACGTAAATCAGATGTTGCAAAGC 58.524 39.130 0.00 0.00 0.00 3.51
598 638 4.023279 ACGTAAATCAGATGTTGCAAAGCA 60.023 37.500 0.00 0.00 36.47 3.91
608 648 1.777101 TTGCAAAGCAAATACGGTGC 58.223 45.000 0.00 0.00 45.96 5.01
609 649 0.386605 TGCAAAGCAAATACGGTGCG 60.387 50.000 0.00 0.00 46.86 5.34
610 650 1.070471 GCAAAGCAAATACGGTGCGG 61.070 55.000 0.00 0.00 46.86 5.69
611 651 0.239879 CAAAGCAAATACGGTGCGGT 59.760 50.000 0.00 0.00 46.86 5.68
613 653 0.239879 AAGCAAATACGGTGCGGTTG 59.760 50.000 0.00 0.00 46.86 3.77
621 776 1.154488 CGGTGCGGTTGAAATCACG 60.154 57.895 0.00 0.00 0.00 4.35
628 783 3.163594 GCGGTTGAAATCACGATTCTTG 58.836 45.455 0.00 0.00 0.00 3.02
635 790 5.003160 TGAAATCACGATTCTTGTCCATGT 58.997 37.500 0.00 0.00 0.00 3.21
636 791 6.169800 TGAAATCACGATTCTTGTCCATGTA 58.830 36.000 0.00 0.00 0.00 2.29
652 807 5.183904 GTCCATGTAGGGAATAATTGATGCC 59.816 44.000 0.00 0.00 39.05 4.40
655 810 4.385825 TGTAGGGAATAATTGATGCCGAC 58.614 43.478 8.39 8.39 33.09 4.79
661 816 4.142902 GGAATAATTGATGCCGACCATACG 60.143 45.833 0.00 0.00 33.29 3.06
692 852 1.286501 TCGTATTTCAGCGCATGGTC 58.713 50.000 11.47 0.00 0.00 4.02
706 866 3.019564 GCATGGTCTTGAAGCCTGTAAT 58.980 45.455 0.00 0.00 0.00 1.89
773 937 6.072397 GGTAAAGAGAAAAGGGAAAGAAGAGC 60.072 42.308 0.00 0.00 0.00 4.09
791 955 5.028549 AGAGCACAAGAAAGAACAGAAGA 57.971 39.130 0.00 0.00 0.00 2.87
792 956 5.431765 AGAGCACAAGAAAGAACAGAAGAA 58.568 37.500 0.00 0.00 0.00 2.52
889 1058 2.368875 ACCACAAACTGGACTGTCTAGG 59.631 50.000 22.68 9.24 43.95 3.02
904 1073 3.198872 GTCTAGGCTTATCCACTGCAAC 58.801 50.000 0.00 0.00 37.29 4.17
906 1075 0.392998 AGGCTTATCCACTGCAACCG 60.393 55.000 0.00 0.00 37.29 4.44
908 1077 0.392461 GCTTATCCACTGCAACCGGA 60.392 55.000 9.46 1.21 0.00 5.14
924 1093 1.749334 CGGAAGGCCCAGCTAGGTAG 61.749 65.000 0.00 0.00 34.66 3.18
945 1115 2.385013 ATTATCTATCATGCGCCGCA 57.615 45.000 16.69 16.69 44.86 5.69
967 1137 1.685765 CCCACCTCATCCTCGTCCA 60.686 63.158 0.00 0.00 0.00 4.02
975 1145 1.753463 ATCCTCGTCCAGTCGACCC 60.753 63.158 13.01 0.00 38.36 4.46
976 1146 3.812019 CCTCGTCCAGTCGACCCG 61.812 72.222 13.01 9.90 38.36 5.28
977 1147 2.745100 CTCGTCCAGTCGACCCGA 60.745 66.667 13.01 13.61 38.36 5.14
1057 1231 3.511595 CCGTCACGCCGCTACCTA 61.512 66.667 0.00 0.00 0.00 3.08
1058 1232 2.277756 CGTCACGCCGCTACCTAC 60.278 66.667 0.00 0.00 0.00 3.18
1059 1233 2.758089 CGTCACGCCGCTACCTACT 61.758 63.158 0.00 0.00 0.00 2.57
1067 1241 2.020694 GCCGCTACCTACTACACTCCA 61.021 57.143 0.00 0.00 0.00 3.86
1099 1273 3.791749 CCCCCTCCTCCTACTCCT 58.208 66.667 0.00 0.00 0.00 3.69
1100 1274 1.544703 CCCCCTCCTCCTACTCCTC 59.455 68.421 0.00 0.00 0.00 3.71
1101 1275 1.544703 CCCCTCCTCCTACTCCTCC 59.455 68.421 0.00 0.00 0.00 4.30
1102 1276 1.002242 CCCCTCCTCCTACTCCTCCT 61.002 65.000 0.00 0.00 0.00 3.69
1103 1277 0.481128 CCCTCCTCCTACTCCTCCTC 59.519 65.000 0.00 0.00 0.00 3.71
1105 1279 1.227249 CTCCTCCTACTCCTCCTCCA 58.773 60.000 0.00 0.00 0.00 3.86
1106 1280 1.144913 CTCCTCCTACTCCTCCTCCAG 59.855 61.905 0.00 0.00 0.00 3.86
1107 1281 0.187361 CCTCCTACTCCTCCTCCAGG 59.813 65.000 0.00 0.00 45.15 4.45
1588 1855 4.694339 CTGCAAGGTAGGTCCATAGTTAC 58.306 47.826 0.00 0.00 39.02 2.50
1618 1924 7.330208 CCACTGGATTTTCATTTCAGCTTAAAG 59.670 37.037 0.00 0.00 0.00 1.85
1626 1933 9.520204 TTTTCATTTCAGCTTAAAGAAGTTCTG 57.480 29.630 6.06 0.00 34.90 3.02
1627 1934 7.807977 TCATTTCAGCTTAAAGAAGTTCTGT 57.192 32.000 6.06 2.98 34.90 3.41
1628 1935 7.865707 TCATTTCAGCTTAAAGAAGTTCTGTC 58.134 34.615 6.06 0.00 34.90 3.51
1629 1936 7.716998 TCATTTCAGCTTAAAGAAGTTCTGTCT 59.283 33.333 6.06 0.00 34.90 3.41
1631 1938 8.958119 TTTCAGCTTAAAGAAGTTCTGTCTTA 57.042 30.769 6.06 0.00 34.19 2.10
1632 1939 7.948278 TCAGCTTAAAGAAGTTCTGTCTTAC 57.052 36.000 6.06 0.00 34.19 2.34
1635 1948 8.917655 CAGCTTAAAGAAGTTCTGTCTTACTAC 58.082 37.037 6.06 0.00 34.19 2.73
1887 2763 4.822350 GGGCACAGGTTTTTAGATATCTCC 59.178 45.833 8.95 3.81 0.00 3.71
1889 2765 5.116882 GCACAGGTTTTTAGATATCTCCGT 58.883 41.667 8.95 4.19 0.00 4.69
1890 2766 5.585047 GCACAGGTTTTTAGATATCTCCGTT 59.415 40.000 8.95 0.00 0.00 4.44
1891 2767 6.759827 GCACAGGTTTTTAGATATCTCCGTTA 59.240 38.462 8.95 0.00 0.00 3.18
1892 2768 7.279313 GCACAGGTTTTTAGATATCTCCGTTAA 59.721 37.037 8.95 0.00 0.00 2.01
1951 2827 3.650139 TCCTTCAGTTTACTTCAGCGAC 58.350 45.455 0.00 0.00 0.00 5.19
1969 2881 7.186128 TCAGCGACTAAATTTCGTACGTATTA 58.814 34.615 16.05 9.32 38.77 0.98
1970 2882 7.696035 TCAGCGACTAAATTTCGTACGTATTAA 59.304 33.333 16.05 6.28 38.77 1.40
1971 2883 8.313227 CAGCGACTAAATTTCGTACGTATTAAA 58.687 33.333 16.05 8.70 38.77 1.52
1972 2884 9.023967 AGCGACTAAATTTCGTACGTATTAAAT 57.976 29.630 16.05 10.69 38.77 1.40
2031 2943 4.900635 ATCTGTCCAAGAACAACAACAC 57.099 40.909 0.00 0.00 38.79 3.32
2035 2947 5.527214 TCTGTCCAAGAACAACAACACATAG 59.473 40.000 0.00 0.00 29.54 2.23
2037 2949 6.350103 TGTCCAAGAACAACAACACATAGTA 58.650 36.000 0.00 0.00 0.00 1.82
2038 2950 6.824196 TGTCCAAGAACAACAACACATAGTAA 59.176 34.615 0.00 0.00 0.00 2.24
2040 2952 8.015658 GTCCAAGAACAACAACACATAGTAATC 58.984 37.037 0.00 0.00 0.00 1.75
2043 2976 9.599322 CAAGAACAACAACACATAGTAATCTTC 57.401 33.333 0.00 0.00 0.00 2.87
2066 3014 5.033589 TGTCCATGTTTTTCCTTTTGCAT 57.966 34.783 0.00 0.00 0.00 3.96
2067 3015 4.815308 TGTCCATGTTTTTCCTTTTGCATG 59.185 37.500 0.00 0.00 35.02 4.06
2068 3016 3.814283 TCCATGTTTTTCCTTTTGCATGC 59.186 39.130 11.82 11.82 34.22 4.06
2069 3017 3.564644 CCATGTTTTTCCTTTTGCATGCA 59.435 39.130 18.46 18.46 34.22 3.96
2140 3088 1.296755 GGGGGCTTTCTTTCGACGAC 61.297 60.000 0.00 0.00 0.00 4.34
2227 3177 3.920093 AAGCCCTACCGCTGCCAAC 62.920 63.158 0.00 0.00 39.64 3.77
2233 3183 0.178068 CTACCGCTGCCAACCTATGT 59.822 55.000 0.00 0.00 0.00 2.29
2238 3188 2.288666 CGCTGCCAACCTATGTAATGT 58.711 47.619 0.00 0.00 0.00 2.71
2241 3191 4.515191 CGCTGCCAACCTATGTAATGTAAT 59.485 41.667 0.00 0.00 0.00 1.89
2242 3192 5.560760 CGCTGCCAACCTATGTAATGTAATG 60.561 44.000 0.00 0.00 0.00 1.90
2243 3193 5.278463 GCTGCCAACCTATGTAATGTAATGG 60.278 44.000 0.00 0.00 0.00 3.16
2244 3194 6.007485 TGCCAACCTATGTAATGTAATGGA 57.993 37.500 0.00 0.00 0.00 3.41
2248 3198 7.523709 GCCAACCTATGTAATGTAATGGAATGG 60.524 40.741 0.00 0.00 0.00 3.16
2278 3228 3.367932 CCTGCACTTGTACTACATTGTCG 59.632 47.826 0.00 0.00 0.00 4.35
2280 3230 3.985279 TGCACTTGTACTACATTGTCGTC 59.015 43.478 0.00 0.00 0.00 4.20
2298 3262 7.892778 TGTCGTCTAACATGTAAGCATTTTA 57.107 32.000 0.00 0.00 31.99 1.52
2299 3263 7.735500 TGTCGTCTAACATGTAAGCATTTTAC 58.264 34.615 0.00 0.00 31.99 2.01
2303 3267 8.227791 CGTCTAACATGTAAGCATTTTACTGTT 58.772 33.333 0.00 13.77 34.24 3.16
2456 3421 1.554392 TCATGTGCAAACAACGCAAC 58.446 45.000 0.00 0.00 41.97 4.17
2459 3424 2.155194 GTGCAAACAACGCAACGCA 61.155 52.632 0.00 0.00 41.97 5.24
2460 3425 1.444383 TGCAAACAACGCAACGCAA 60.444 47.368 0.00 0.00 36.17 4.85
2461 3426 0.803768 TGCAAACAACGCAACGCAAT 60.804 45.000 0.00 0.00 36.17 3.56
2462 3427 0.381668 GCAAACAACGCAACGCAATG 60.382 50.000 0.00 0.00 0.00 2.82
2463 3428 0.381668 CAAACAACGCAACGCAATGC 60.382 50.000 0.00 0.00 42.94 3.56
2464 3429 1.486644 AAACAACGCAACGCAATGCC 61.487 50.000 0.00 0.00 43.47 4.40
2494 3461 6.983890 TGGGTTAAATCTTGAAGCAGTTTTTC 59.016 34.615 0.00 0.00 0.00 2.29
2507 3475 6.031751 AGCAGTTTTTCAAGTGTTTAACCA 57.968 33.333 0.00 0.00 35.92 3.67
2508 3476 6.639563 AGCAGTTTTTCAAGTGTTTAACCAT 58.360 32.000 0.00 0.00 35.92 3.55
2509 3477 7.102993 AGCAGTTTTTCAAGTGTTTAACCATT 58.897 30.769 0.00 0.00 35.92 3.16
2510 3478 7.064490 AGCAGTTTTTCAAGTGTTTAACCATTG 59.936 33.333 0.00 0.00 35.92 2.82
2511 3479 7.064016 GCAGTTTTTCAAGTGTTTAACCATTGA 59.936 33.333 7.64 7.64 35.92 2.57
2572 3541 4.115516 CTGCGCATATATCCTCCATGTAC 58.884 47.826 12.24 0.00 0.00 2.90
2577 3546 4.341235 GCATATATCCTCCATGTACGCCTA 59.659 45.833 0.00 0.00 0.00 3.93
2578 3547 5.011125 GCATATATCCTCCATGTACGCCTAT 59.989 44.000 0.00 0.00 0.00 2.57
2579 3548 6.682746 CATATATCCTCCATGTACGCCTATC 58.317 44.000 0.00 0.00 0.00 2.08
2580 3549 1.244816 TCCTCCATGTACGCCTATCG 58.755 55.000 0.00 0.00 45.38 2.92
2801 3778 2.037121 TCAGTTGTAGCAGCTGTTAGCA 59.963 45.455 16.64 11.46 45.56 3.49
2905 3885 5.237344 GCATCTAGAGTGTTTGTGACAGTTT 59.763 40.000 0.00 0.00 41.98 2.66
2915 3895 8.131100 AGTGTTTGTGACAGTTTAAATGATCAG 58.869 33.333 0.09 0.00 38.82 2.90
2962 3945 0.035630 ATTGACAGTGAGGAGCAGGC 60.036 55.000 0.00 0.00 0.00 4.85
2963 3946 2.116983 TTGACAGTGAGGAGCAGGCC 62.117 60.000 0.00 0.00 0.00 5.19
2964 3947 3.655810 GACAGTGAGGAGCAGGCCG 62.656 68.421 0.00 0.00 0.00 6.13
2965 3948 4.463879 CAGTGAGGAGCAGGCCGG 62.464 72.222 0.00 0.00 0.00 6.13
3243 4282 4.879545 ACTACATTTTCAGTTTCACCGTGT 59.120 37.500 0.00 0.00 0.00 4.49
3244 4283 4.287238 ACATTTTCAGTTTCACCGTGTC 57.713 40.909 0.00 0.00 0.00 3.67
3260 4299 1.467342 GTGTCGGGAATTGTTACTGCC 59.533 52.381 0.00 0.00 0.00 4.85
3330 4369 4.159135 AGCATGTCAAAGTTCATTCCATCC 59.841 41.667 0.00 0.00 0.00 3.51
3457 4499 3.068165 CGATGCATCCACTAGACCACTAA 59.932 47.826 20.87 0.00 0.00 2.24
3514 4556 7.946207 TGTGCTGTATAAATGGAAAGTGAAAA 58.054 30.769 0.00 0.00 0.00 2.29
3515 4557 8.417106 TGTGCTGTATAAATGGAAAGTGAAAAA 58.583 29.630 0.00 0.00 0.00 1.94
3570 4612 9.851686 ATTGTATACCTGATCTGAATGCTTTTA 57.148 29.630 0.00 0.00 0.00 1.52
3584 4626 4.173290 TGCTTTTAAACTGTACCTGGGT 57.827 40.909 0.00 0.00 0.00 4.51
3585 4627 5.307544 TGCTTTTAAACTGTACCTGGGTA 57.692 39.130 0.00 0.00 0.00 3.69
3586 4628 5.310451 TGCTTTTAAACTGTACCTGGGTAG 58.690 41.667 0.00 0.00 0.00 3.18
3607 4649 7.154656 GGTAGGTACCAAATTAAGTATACCCG 58.845 42.308 15.94 0.00 45.73 5.28
3675 4718 4.825085 TCATGTTTTGTTCCTGTACCCTTC 59.175 41.667 0.00 0.00 0.00 3.46
3737 4780 8.260114 AGCAGAATATGTTTAAATTTTCTGGGG 58.740 33.333 21.17 8.05 41.80 4.96
3738 4781 7.495606 GCAGAATATGTTTAAATTTTCTGGGGG 59.504 37.037 21.17 7.84 41.80 5.40
3782 4827 6.727824 ATATGCAACAGAAGTACTCAACAC 57.272 37.500 0.00 0.00 0.00 3.32
3784 4829 2.221055 GCAACAGAAGTACTCAACACGG 59.779 50.000 0.00 0.00 0.00 4.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.400928 CAGCAGCAGGAGGAGGCT 61.401 66.667 0.00 0.00 42.06 4.58
2 3 3.400928 AGCAGCAGCAGGAGGAGG 61.401 66.667 3.17 0.00 45.49 4.30
3 4 2.125065 CAGCAGCAGCAGGAGGAG 60.125 66.667 3.17 0.00 45.49 3.69
4 5 4.405671 GCAGCAGCAGCAGGAGGA 62.406 66.667 4.63 0.00 45.49 3.71
5 6 4.411981 AGCAGCAGCAGCAGGAGG 62.412 66.667 12.92 0.00 45.49 4.30
6 7 3.128188 CAGCAGCAGCAGCAGGAG 61.128 66.667 12.92 0.00 45.49 3.69
12 13 3.826754 CATGGGCAGCAGCAGCAG 61.827 66.667 12.41 0.00 45.49 4.24
13 14 2.273588 TATCATGGGCAGCAGCAGCA 62.274 55.000 12.41 0.00 45.49 4.41
14 15 1.105167 TTATCATGGGCAGCAGCAGC 61.105 55.000 2.65 0.00 44.61 5.25
15 16 1.269723 CATTATCATGGGCAGCAGCAG 59.730 52.381 2.65 0.00 44.61 4.24
16 17 1.133730 TCATTATCATGGGCAGCAGCA 60.134 47.619 2.65 0.00 44.61 4.41
17 18 1.540267 CTCATTATCATGGGCAGCAGC 59.460 52.381 0.00 0.00 41.10 5.25
18 19 2.160205 CCTCATTATCATGGGCAGCAG 58.840 52.381 0.00 0.00 27.87 4.24
19 20 1.776063 TCCTCATTATCATGGGCAGCA 59.224 47.619 0.00 0.00 27.87 4.41
20 21 2.574006 TCCTCATTATCATGGGCAGC 57.426 50.000 0.00 0.00 27.87 5.25
21 22 4.296621 TCATCCTCATTATCATGGGCAG 57.703 45.455 0.00 0.00 27.87 4.85
22 23 4.290196 TCATCATCCTCATTATCATGGGCA 59.710 41.667 0.00 0.00 27.87 5.36
23 24 4.851843 TCATCATCCTCATTATCATGGGC 58.148 43.478 0.00 0.00 27.87 5.36
24 25 5.191124 TCCTCATCATCCTCATTATCATGGG 59.809 44.000 0.00 0.00 0.00 4.00
25 26 6.309389 TCCTCATCATCCTCATTATCATGG 57.691 41.667 0.00 0.00 0.00 3.66
26 27 7.496263 GTCATCCTCATCATCCTCATTATCATG 59.504 40.741 0.00 0.00 0.00 3.07
27 28 7.365742 GGTCATCCTCATCATCCTCATTATCAT 60.366 40.741 0.00 0.00 0.00 2.45
28 29 6.070366 GGTCATCCTCATCATCCTCATTATCA 60.070 42.308 0.00 0.00 0.00 2.15
29 30 6.070366 TGGTCATCCTCATCATCCTCATTATC 60.070 42.308 0.00 0.00 34.23 1.75
30 31 5.789054 TGGTCATCCTCATCATCCTCATTAT 59.211 40.000 0.00 0.00 34.23 1.28
31 32 5.157395 TGGTCATCCTCATCATCCTCATTA 58.843 41.667 0.00 0.00 34.23 1.90
32 33 3.978672 TGGTCATCCTCATCATCCTCATT 59.021 43.478 0.00 0.00 34.23 2.57
33 34 3.595021 TGGTCATCCTCATCATCCTCAT 58.405 45.455 0.00 0.00 34.23 2.90
34 35 3.050523 TGGTCATCCTCATCATCCTCA 57.949 47.619 0.00 0.00 34.23 3.86
35 36 3.581770 TCATGGTCATCCTCATCATCCTC 59.418 47.826 0.00 0.00 34.23 3.71
36 37 3.583526 CTCATGGTCATCCTCATCATCCT 59.416 47.826 0.00 0.00 34.23 3.24
37 38 3.307550 CCTCATGGTCATCCTCATCATCC 60.308 52.174 0.00 0.00 34.23 3.51
38 39 3.581770 TCCTCATGGTCATCCTCATCATC 59.418 47.826 0.00 0.00 34.23 2.92
39 40 3.583526 CTCCTCATGGTCATCCTCATCAT 59.416 47.826 0.00 0.00 34.23 2.45
40 41 2.970640 CTCCTCATGGTCATCCTCATCA 59.029 50.000 0.00 0.00 34.23 3.07
41 42 2.302445 CCTCCTCATGGTCATCCTCATC 59.698 54.545 0.00 0.00 34.23 2.92
42 43 2.090324 TCCTCCTCATGGTCATCCTCAT 60.090 50.000 0.00 0.00 34.23 2.90
43 44 1.291939 TCCTCCTCATGGTCATCCTCA 59.708 52.381 0.00 0.00 34.23 3.86
44 45 1.969923 CTCCTCCTCATGGTCATCCTC 59.030 57.143 0.00 0.00 34.23 3.71
45 46 1.414245 CCTCCTCCTCATGGTCATCCT 60.414 57.143 0.00 0.00 34.23 3.24
46 47 1.055040 CCTCCTCCTCATGGTCATCC 58.945 60.000 0.00 0.00 34.23 3.51
47 48 1.055040 CCCTCCTCCTCATGGTCATC 58.945 60.000 0.00 0.00 34.23 2.92
48 49 1.059006 GCCCTCCTCCTCATGGTCAT 61.059 60.000 0.00 0.00 34.23 3.06
49 50 1.690633 GCCCTCCTCCTCATGGTCA 60.691 63.158 0.00 0.00 34.23 4.02
50 51 1.274703 TTGCCCTCCTCCTCATGGTC 61.275 60.000 0.00 0.00 34.23 4.02
51 52 1.229951 TTGCCCTCCTCCTCATGGT 60.230 57.895 0.00 0.00 34.23 3.55
52 53 0.984961 TCTTGCCCTCCTCCTCATGG 60.985 60.000 0.00 0.00 0.00 3.66
53 54 0.914644 TTCTTGCCCTCCTCCTCATG 59.085 55.000 0.00 0.00 0.00 3.07
54 55 0.915364 GTTCTTGCCCTCCTCCTCAT 59.085 55.000 0.00 0.00 0.00 2.90
55 56 0.473694 TGTTCTTGCCCTCCTCCTCA 60.474 55.000 0.00 0.00 0.00 3.86
56 57 0.035915 GTGTTCTTGCCCTCCTCCTC 60.036 60.000 0.00 0.00 0.00 3.71
57 58 0.768221 TGTGTTCTTGCCCTCCTCCT 60.768 55.000 0.00 0.00 0.00 3.69
58 59 0.606673 GTGTGTTCTTGCCCTCCTCC 60.607 60.000 0.00 0.00 0.00 4.30
59 60 0.606673 GGTGTGTTCTTGCCCTCCTC 60.607 60.000 0.00 0.00 0.00 3.71
60 61 1.352622 TGGTGTGTTCTTGCCCTCCT 61.353 55.000 0.00 0.00 0.00 3.69
61 62 0.251341 ATGGTGTGTTCTTGCCCTCC 60.251 55.000 0.00 0.00 0.00 4.30
62 63 1.168714 GATGGTGTGTTCTTGCCCTC 58.831 55.000 0.00 0.00 0.00 4.30
63 64 0.478072 TGATGGTGTGTTCTTGCCCT 59.522 50.000 0.00 0.00 0.00 5.19
64 65 1.474077 GATGATGGTGTGTTCTTGCCC 59.526 52.381 0.00 0.00 0.00 5.36
65 66 1.131126 CGATGATGGTGTGTTCTTGCC 59.869 52.381 0.00 0.00 0.00 4.52
66 67 1.806542 ACGATGATGGTGTGTTCTTGC 59.193 47.619 0.00 0.00 0.00 4.01
67 68 3.329386 AGACGATGATGGTGTGTTCTTG 58.671 45.455 0.00 0.00 0.00 3.02
68 69 3.685139 AGACGATGATGGTGTGTTCTT 57.315 42.857 0.00 0.00 0.00 2.52
69 70 3.244215 ACAAGACGATGATGGTGTGTTCT 60.244 43.478 0.00 0.00 0.00 3.01
70 71 3.067106 ACAAGACGATGATGGTGTGTTC 58.933 45.455 0.00 0.00 0.00 3.18
71 72 3.126001 ACAAGACGATGATGGTGTGTT 57.874 42.857 0.00 0.00 0.00 3.32
72 73 2.839486 ACAAGACGATGATGGTGTGT 57.161 45.000 0.00 0.00 0.00 3.72
73 74 4.327357 GTCTAACAAGACGATGATGGTGTG 59.673 45.833 0.00 0.00 0.00 3.82
74 75 4.021456 TGTCTAACAAGACGATGATGGTGT 60.021 41.667 0.00 0.00 41.43 4.16
75 76 4.494484 TGTCTAACAAGACGATGATGGTG 58.506 43.478 0.00 0.00 41.43 4.17
76 77 4.462834 TCTGTCTAACAAGACGATGATGGT 59.537 41.667 0.00 0.00 41.43 3.55
77 78 4.800993 GTCTGTCTAACAAGACGATGATGG 59.199 45.833 0.00 0.00 41.43 3.51
78 79 5.402398 TGTCTGTCTAACAAGACGATGATG 58.598 41.667 0.00 0.00 41.43 3.07
79 80 5.416013 TCTGTCTGTCTAACAAGACGATGAT 59.584 40.000 0.00 0.00 41.43 2.45
80 81 4.760204 TCTGTCTGTCTAACAAGACGATGA 59.240 41.667 0.00 0.00 41.43 2.92
81 82 4.854291 GTCTGTCTGTCTAACAAGACGATG 59.146 45.833 0.00 0.00 41.43 3.84
82 83 4.378563 CGTCTGTCTGTCTAACAAGACGAT 60.379 45.833 20.10 0.00 43.21 3.73
83 84 3.059120 CGTCTGTCTGTCTAACAAGACGA 60.059 47.826 20.10 8.13 43.21 4.20
84 85 3.227147 CGTCTGTCTGTCTAACAAGACG 58.773 50.000 14.61 14.61 41.43 4.18
85 86 3.566523 CCGTCTGTCTGTCTAACAAGAC 58.433 50.000 0.00 0.00 39.15 3.01
86 87 2.557056 CCCGTCTGTCTGTCTAACAAGA 59.443 50.000 0.00 0.00 0.00 3.02
87 88 2.927014 GCCCGTCTGTCTGTCTAACAAG 60.927 54.545 0.00 0.00 0.00 3.16
88 89 1.000506 GCCCGTCTGTCTGTCTAACAA 59.999 52.381 0.00 0.00 0.00 2.83
89 90 0.601558 GCCCGTCTGTCTGTCTAACA 59.398 55.000 0.00 0.00 0.00 2.41
90 91 0.456312 CGCCCGTCTGTCTGTCTAAC 60.456 60.000 0.00 0.00 0.00 2.34
91 92 1.880894 CGCCCGTCTGTCTGTCTAA 59.119 57.895 0.00 0.00 0.00 2.10
92 93 2.697761 GCGCCCGTCTGTCTGTCTA 61.698 63.158 0.00 0.00 0.00 2.59
93 94 4.057428 GCGCCCGTCTGTCTGTCT 62.057 66.667 0.00 0.00 0.00 3.41
96 97 4.379243 AAGGCGCCCGTCTGTCTG 62.379 66.667 26.15 0.00 0.00 3.51
97 98 4.070552 GAAGGCGCCCGTCTGTCT 62.071 66.667 26.15 0.00 0.00 3.41
98 99 3.665675 ATGAAGGCGCCCGTCTGTC 62.666 63.158 26.15 11.65 33.31 3.51
99 100 3.706373 ATGAAGGCGCCCGTCTGT 61.706 61.111 26.15 11.23 33.31 3.41
100 101 3.197790 CATGAAGGCGCCCGTCTG 61.198 66.667 26.15 15.99 33.31 3.51
101 102 3.706373 ACATGAAGGCGCCCGTCT 61.706 61.111 26.15 4.98 33.31 4.18
102 103 3.499737 CACATGAAGGCGCCCGTC 61.500 66.667 26.15 21.71 32.76 4.79
105 106 3.443045 CACCACATGAAGGCGCCC 61.443 66.667 26.15 9.73 0.00 6.13
106 107 3.443045 CCACCACATGAAGGCGCC 61.443 66.667 21.89 21.89 0.00 6.53
107 108 4.120331 GCCACCACATGAAGGCGC 62.120 66.667 0.00 0.00 37.41 6.53
110 111 1.880819 GCCAAGCCACCACATGAAGG 61.881 60.000 0.00 3.24 0.00 3.46
111 112 0.896940 AGCCAAGCCACCACATGAAG 60.897 55.000 0.00 0.00 0.00 3.02
112 113 0.469705 AAGCCAAGCCACCACATGAA 60.470 50.000 0.00 0.00 0.00 2.57
113 114 1.153524 AAGCCAAGCCACCACATGA 59.846 52.632 0.00 0.00 0.00 3.07
114 115 1.290955 CAAGCCAAGCCACCACATG 59.709 57.895 0.00 0.00 0.00 3.21
115 116 1.909781 CCAAGCCAAGCCACCACAT 60.910 57.895 0.00 0.00 0.00 3.21
116 117 2.521465 CCAAGCCAAGCCACCACA 60.521 61.111 0.00 0.00 0.00 4.17
117 118 3.994853 GCCAAGCCAAGCCACCAC 61.995 66.667 0.00 0.00 0.00 4.16
118 119 2.839609 TAGCCAAGCCAAGCCACCA 61.840 57.895 0.00 0.00 0.00 4.17
119 120 2.035626 TAGCCAAGCCAAGCCACC 59.964 61.111 0.00 0.00 0.00 4.61
120 121 1.303643 AGTAGCCAAGCCAAGCCAC 60.304 57.895 0.00 0.00 0.00 5.01
121 122 1.303561 CAGTAGCCAAGCCAAGCCA 60.304 57.895 0.00 0.00 0.00 4.75
122 123 1.303643 ACAGTAGCCAAGCCAAGCC 60.304 57.895 0.00 0.00 0.00 4.35
123 124 0.890996 ACACAGTAGCCAAGCCAAGC 60.891 55.000 0.00 0.00 0.00 4.01
124 125 0.877071 CACACAGTAGCCAAGCCAAG 59.123 55.000 0.00 0.00 0.00 3.61
125 126 0.472044 TCACACAGTAGCCAAGCCAA 59.528 50.000 0.00 0.00 0.00 4.52
126 127 0.250295 GTCACACAGTAGCCAAGCCA 60.250 55.000 0.00 0.00 0.00 4.75
127 128 1.291877 CGTCACACAGTAGCCAAGCC 61.292 60.000 0.00 0.00 0.00 4.35
128 129 0.319555 TCGTCACACAGTAGCCAAGC 60.320 55.000 0.00 0.00 0.00 4.01
129 130 1.995484 CATCGTCACACAGTAGCCAAG 59.005 52.381 0.00 0.00 0.00 3.61
130 131 1.337728 CCATCGTCACACAGTAGCCAA 60.338 52.381 0.00 0.00 0.00 4.52
131 132 0.246360 CCATCGTCACACAGTAGCCA 59.754 55.000 0.00 0.00 0.00 4.75
132 133 0.246635 ACCATCGTCACACAGTAGCC 59.753 55.000 0.00 0.00 0.00 3.93
133 134 1.067846 TCACCATCGTCACACAGTAGC 60.068 52.381 0.00 0.00 0.00 3.58
134 135 2.229062 AGTCACCATCGTCACACAGTAG 59.771 50.000 0.00 0.00 0.00 2.57
135 136 2.030274 CAGTCACCATCGTCACACAGTA 60.030 50.000 0.00 0.00 0.00 2.74
136 137 1.040646 AGTCACCATCGTCACACAGT 58.959 50.000 0.00 0.00 0.00 3.55
137 138 1.422388 CAGTCACCATCGTCACACAG 58.578 55.000 0.00 0.00 0.00 3.66
138 139 0.599991 GCAGTCACCATCGTCACACA 60.600 55.000 0.00 0.00 0.00 3.72
139 140 0.599991 TGCAGTCACCATCGTCACAC 60.600 55.000 0.00 0.00 0.00 3.82
140 141 0.599991 GTGCAGTCACCATCGTCACA 60.600 55.000 0.00 0.00 37.24 3.58
141 142 0.319900 AGTGCAGTCACCATCGTCAC 60.320 55.000 0.00 0.00 44.16 3.67
142 143 0.038251 GAGTGCAGTCACCATCGTCA 60.038 55.000 16.85 0.00 44.16 4.35
143 144 0.244994 AGAGTGCAGTCACCATCGTC 59.755 55.000 23.21 0.00 44.16 4.20
144 145 0.037882 CAGAGTGCAGTCACCATCGT 60.038 55.000 23.21 0.00 44.16 3.73
145 146 0.037882 ACAGAGTGCAGTCACCATCG 60.038 55.000 23.21 6.88 44.16 3.84
146 147 2.417924 CCTACAGAGTGCAGTCACCATC 60.418 54.545 23.21 0.00 44.16 3.51
147 148 1.552337 CCTACAGAGTGCAGTCACCAT 59.448 52.381 23.21 8.01 44.16 3.55
148 149 0.969149 CCTACAGAGTGCAGTCACCA 59.031 55.000 23.21 6.57 44.16 4.17
149 150 1.257743 TCCTACAGAGTGCAGTCACC 58.742 55.000 23.21 0.00 44.16 4.02
150 151 2.353208 CCTTCCTACAGAGTGCAGTCAC 60.353 54.545 23.21 0.00 43.44 3.67
151 152 1.895798 CCTTCCTACAGAGTGCAGTCA 59.104 52.381 23.21 2.08 0.00 3.41
152 153 2.171840 TCCTTCCTACAGAGTGCAGTC 58.828 52.381 13.97 13.97 0.00 3.51
153 154 2.310779 TCCTTCCTACAGAGTGCAGT 57.689 50.000 0.00 0.00 0.00 4.40
154 155 2.093764 CCTTCCTTCCTACAGAGTGCAG 60.094 54.545 0.00 0.00 0.00 4.41
155 156 1.902508 CCTTCCTTCCTACAGAGTGCA 59.097 52.381 0.00 0.00 0.00 4.57
156 157 2.180276 TCCTTCCTTCCTACAGAGTGC 58.820 52.381 0.00 0.00 0.00 4.40
157 158 3.196685 CCTTCCTTCCTTCCTACAGAGTG 59.803 52.174 0.00 0.00 0.00 3.51
158 159 3.077695 TCCTTCCTTCCTTCCTACAGAGT 59.922 47.826 0.00 0.00 0.00 3.24
159 160 3.714144 TCCTTCCTTCCTTCCTACAGAG 58.286 50.000 0.00 0.00 0.00 3.35
160 161 3.847042 TCCTTCCTTCCTTCCTACAGA 57.153 47.619 0.00 0.00 0.00 3.41
161 162 3.198853 CCTTCCTTCCTTCCTTCCTACAG 59.801 52.174 0.00 0.00 0.00 2.74
162 163 3.181399 TCCTTCCTTCCTTCCTTCCTACA 60.181 47.826 0.00 0.00 0.00 2.74
163 164 3.451890 TCCTTCCTTCCTTCCTTCCTAC 58.548 50.000 0.00 0.00 0.00 3.18
164 165 3.340049 TCTCCTTCCTTCCTTCCTTCCTA 59.660 47.826 0.00 0.00 0.00 2.94
200 201 1.600957 TGATTACGACGACCGAGATCC 59.399 52.381 0.00 0.00 41.76 3.36
206 207 2.470196 ACTGATGATTACGACGACCG 57.530 50.000 0.00 0.00 45.44 4.79
208 209 5.798934 ACAAGTTACTGATGATTACGACGAC 59.201 40.000 0.00 0.00 0.00 4.34
209 210 5.946298 ACAAGTTACTGATGATTACGACGA 58.054 37.500 0.00 0.00 0.00 4.20
210 211 7.431376 ACATACAAGTTACTGATGATTACGACG 59.569 37.037 8.53 0.00 0.00 5.12
232 236 6.759356 GGCGGCAATACATACATACATACATA 59.241 38.462 3.07 0.00 0.00 2.29
274 278 1.672356 CTTGAACCACAGGCGGAGG 60.672 63.158 0.00 0.00 0.00 4.30
275 279 1.672356 CCTTGAACCACAGGCGGAG 60.672 63.158 0.00 0.00 0.00 4.63
276 280 2.429930 CCTTGAACCACAGGCGGA 59.570 61.111 0.00 0.00 0.00 5.54
277 281 2.672996 CCCTTGAACCACAGGCGG 60.673 66.667 0.00 0.00 0.00 6.13
278 282 2.119484 TACCCCTTGAACCACAGGCG 62.119 60.000 0.00 0.00 0.00 5.52
279 283 0.111639 TTACCCCTTGAACCACAGGC 59.888 55.000 0.00 0.00 0.00 4.85
280 284 2.668144 TTTACCCCTTGAACCACAGG 57.332 50.000 0.00 0.00 0.00 4.00
281 285 5.949354 TCATTATTTACCCCTTGAACCACAG 59.051 40.000 0.00 0.00 0.00 3.66
282 286 5.893500 TCATTATTTACCCCTTGAACCACA 58.106 37.500 0.00 0.00 0.00 4.17
283 287 6.661805 TCTTCATTATTTACCCCTTGAACCAC 59.338 38.462 0.00 0.00 0.00 4.16
284 288 6.795590 TCTTCATTATTTACCCCTTGAACCA 58.204 36.000 0.00 0.00 0.00 3.67
285 289 7.116736 TCTCTTCATTATTTACCCCTTGAACC 58.883 38.462 0.00 0.00 0.00 3.62
286 290 8.575649 TTCTCTTCATTATTTACCCCTTGAAC 57.424 34.615 0.00 0.00 0.00 3.18
287 291 7.834181 CCTTCTCTTCATTATTTACCCCTTGAA 59.166 37.037 0.00 0.00 0.00 2.69
288 292 7.346471 CCTTCTCTTCATTATTTACCCCTTGA 58.654 38.462 0.00 0.00 0.00 3.02
289 293 6.547510 CCCTTCTCTTCATTATTTACCCCTTG 59.452 42.308 0.00 0.00 0.00 3.61
290 294 6.450352 TCCCTTCTCTTCATTATTTACCCCTT 59.550 38.462 0.00 0.00 0.00 3.95
291 295 5.976870 TCCCTTCTCTTCATTATTTACCCCT 59.023 40.000 0.00 0.00 0.00 4.79
292 296 6.062749 GTCCCTTCTCTTCATTATTTACCCC 58.937 44.000 0.00 0.00 0.00 4.95
293 297 5.758784 CGTCCCTTCTCTTCATTATTTACCC 59.241 44.000 0.00 0.00 0.00 3.69
312 316 2.775032 TTACAAGTGAGGCGCGTCCC 62.775 60.000 25.78 15.92 34.51 4.46
332 370 8.279800 GCTCGTATTGCATTACATTACATTACA 58.720 33.333 16.64 0.00 35.68 2.41
345 383 4.937620 TCTCTTCTTTGCTCGTATTGCATT 59.062 37.500 0.00 0.00 40.34 3.56
346 384 4.507710 TCTCTTCTTTGCTCGTATTGCAT 58.492 39.130 0.00 0.00 40.34 3.96
347 385 3.925379 TCTCTTCTTTGCTCGTATTGCA 58.075 40.909 0.00 0.00 38.80 4.08
348 386 3.242252 GCTCTCTTCTTTGCTCGTATTGC 60.242 47.826 0.00 0.00 0.00 3.56
349 387 3.928992 TGCTCTCTTCTTTGCTCGTATTG 59.071 43.478 0.00 0.00 0.00 1.90
351 389 3.445450 TCTGCTCTCTTCTTTGCTCGTAT 59.555 43.478 0.00 0.00 0.00 3.06
352 390 2.820197 TCTGCTCTCTTCTTTGCTCGTA 59.180 45.455 0.00 0.00 0.00 3.43
353 391 1.615883 TCTGCTCTCTTCTTTGCTCGT 59.384 47.619 0.00 0.00 0.00 4.18
354 392 1.991965 GTCTGCTCTCTTCTTTGCTCG 59.008 52.381 0.00 0.00 0.00 5.03
355 393 1.991965 CGTCTGCTCTCTTCTTTGCTC 59.008 52.381 0.00 0.00 0.00 4.26
356 394 1.342819 ACGTCTGCTCTCTTCTTTGCT 59.657 47.619 0.00 0.00 0.00 3.91
357 395 1.458827 CACGTCTGCTCTCTTCTTTGC 59.541 52.381 0.00 0.00 0.00 3.68
358 396 3.018598 TCACGTCTGCTCTCTTCTTTG 57.981 47.619 0.00 0.00 0.00 2.77
361 399 1.543802 CCTTCACGTCTGCTCTCTTCT 59.456 52.381 0.00 0.00 0.00 2.85
362 400 1.989430 CCTTCACGTCTGCTCTCTTC 58.011 55.000 0.00 0.00 0.00 2.87
363 401 0.037790 GCCTTCACGTCTGCTCTCTT 60.038 55.000 0.00 0.00 0.00 2.85
364 402 1.181741 TGCCTTCACGTCTGCTCTCT 61.182 55.000 0.00 0.00 0.00 3.10
366 404 1.291588 CTGCCTTCACGTCTGCTCT 59.708 57.895 0.00 0.00 0.00 4.09
368 406 1.536073 TAGCTGCCTTCACGTCTGCT 61.536 55.000 9.82 9.82 38.33 4.24
369 407 0.460987 ATAGCTGCCTTCACGTCTGC 60.461 55.000 0.00 0.00 0.00 4.26
370 408 1.284657 CATAGCTGCCTTCACGTCTG 58.715 55.000 0.00 0.00 0.00 3.51
371 409 0.898320 ACATAGCTGCCTTCACGTCT 59.102 50.000 0.00 0.00 0.00 4.18
372 410 1.002366 CACATAGCTGCCTTCACGTC 58.998 55.000 0.00 0.00 0.00 4.34
373 411 0.321671 ACACATAGCTGCCTTCACGT 59.678 50.000 0.00 0.00 0.00 4.49
374 412 1.129251 CAACACATAGCTGCCTTCACG 59.871 52.381 0.00 0.00 0.00 4.35
375 413 2.160417 GTCAACACATAGCTGCCTTCAC 59.840 50.000 0.00 0.00 0.00 3.18
376 414 2.224499 TGTCAACACATAGCTGCCTTCA 60.224 45.455 0.00 0.00 0.00 3.02
377 415 2.426522 TGTCAACACATAGCTGCCTTC 58.573 47.619 0.00 0.00 0.00 3.46
378 416 2.566833 TGTCAACACATAGCTGCCTT 57.433 45.000 0.00 0.00 0.00 4.35
379 417 2.566833 TTGTCAACACATAGCTGCCT 57.433 45.000 0.00 0.00 30.55 4.75
380 418 3.641437 TTTTGTCAACACATAGCTGCC 57.359 42.857 0.00 0.00 30.55 4.85
398 436 1.144298 AGTTGGGTAGGACGCCTTTTT 59.856 47.619 3.71 0.00 34.61 1.94
399 437 0.769247 AGTTGGGTAGGACGCCTTTT 59.231 50.000 3.71 0.00 34.61 2.27
400 438 0.769247 AAGTTGGGTAGGACGCCTTT 59.231 50.000 3.71 0.00 34.61 3.11
401 439 0.769247 AAAGTTGGGTAGGACGCCTT 59.231 50.000 3.71 0.00 34.61 4.35
402 440 0.036306 CAAAGTTGGGTAGGACGCCT 59.964 55.000 3.87 3.87 37.71 5.52
403 441 0.958876 CCAAAGTTGGGTAGGACGCC 60.959 60.000 1.83 0.00 44.70 5.68
404 442 2.551644 CCAAAGTTGGGTAGGACGC 58.448 57.895 1.83 0.00 44.70 5.19
414 452 5.006746 GCTCTATACATCGGTTCCAAAGTTG 59.993 44.000 0.00 0.00 0.00 3.16
415 453 5.104900 AGCTCTATACATCGGTTCCAAAGTT 60.105 40.000 0.00 0.00 0.00 2.66
416 454 4.406003 AGCTCTATACATCGGTTCCAAAGT 59.594 41.667 0.00 0.00 0.00 2.66
417 455 4.747108 CAGCTCTATACATCGGTTCCAAAG 59.253 45.833 0.00 0.00 0.00 2.77
418 456 4.693283 CAGCTCTATACATCGGTTCCAAA 58.307 43.478 0.00 0.00 0.00 3.28
419 457 3.492656 GCAGCTCTATACATCGGTTCCAA 60.493 47.826 0.00 0.00 0.00 3.53
420 458 2.035961 GCAGCTCTATACATCGGTTCCA 59.964 50.000 0.00 0.00 0.00 3.53
421 459 2.035961 TGCAGCTCTATACATCGGTTCC 59.964 50.000 0.00 0.00 0.00 3.62
422 460 3.371102 TGCAGCTCTATACATCGGTTC 57.629 47.619 0.00 0.00 0.00 3.62
423 461 4.767409 TCTATGCAGCTCTATACATCGGTT 59.233 41.667 0.00 0.00 0.00 4.44
424 462 4.156922 GTCTATGCAGCTCTATACATCGGT 59.843 45.833 0.00 0.00 0.00 4.69
425 463 4.156739 TGTCTATGCAGCTCTATACATCGG 59.843 45.833 0.00 0.00 0.00 4.18
426 464 5.302357 TGTCTATGCAGCTCTATACATCG 57.698 43.478 0.00 0.00 0.00 3.84
427 465 9.645059 TTAATTGTCTATGCAGCTCTATACATC 57.355 33.333 0.00 0.00 0.00 3.06
429 467 9.830975 TTTTAATTGTCTATGCAGCTCTATACA 57.169 29.630 0.00 0.00 0.00 2.29
433 471 9.394767 TGATTTTTAATTGTCTATGCAGCTCTA 57.605 29.630 0.00 0.00 0.00 2.43
434 472 8.284945 TGATTTTTAATTGTCTATGCAGCTCT 57.715 30.769 0.00 0.00 0.00 4.09
435 473 8.915871 TTGATTTTTAATTGTCTATGCAGCTC 57.084 30.769 0.00 0.00 0.00 4.09
436 474 9.880157 AATTGATTTTTAATTGTCTATGCAGCT 57.120 25.926 0.00 0.00 0.00 4.24
461 499 9.896263 GGTACGAGTAATTGGAAAATTTTGTAA 57.104 29.630 8.47 3.67 0.00 2.41
462 500 9.064706 TGGTACGAGTAATTGGAAAATTTTGTA 57.935 29.630 8.47 0.00 0.00 2.41
463 501 7.942990 TGGTACGAGTAATTGGAAAATTTTGT 58.057 30.769 8.47 0.00 0.00 2.83
464 502 8.804688 TTGGTACGAGTAATTGGAAAATTTTG 57.195 30.769 8.47 0.00 0.00 2.44
490 528 9.220767 CGGCATACATCTAGCTGAGTATATATA 57.779 37.037 0.00 0.00 36.79 0.86
491 529 7.175816 CCGGCATACATCTAGCTGAGTATATAT 59.824 40.741 0.00 0.00 36.79 0.86
492 530 6.486993 CCGGCATACATCTAGCTGAGTATATA 59.513 42.308 0.00 0.00 36.79 0.86
493 531 5.300539 CCGGCATACATCTAGCTGAGTATAT 59.699 44.000 0.00 0.00 36.79 0.86
494 532 4.640647 CCGGCATACATCTAGCTGAGTATA 59.359 45.833 0.00 0.00 36.79 1.47
495 533 3.445450 CCGGCATACATCTAGCTGAGTAT 59.555 47.826 0.00 0.00 36.79 2.12
496 534 2.820197 CCGGCATACATCTAGCTGAGTA 59.180 50.000 0.00 0.00 36.79 2.59
497 535 1.615883 CCGGCATACATCTAGCTGAGT 59.384 52.381 0.00 0.00 36.79 3.41
498 536 1.671261 GCCGGCATACATCTAGCTGAG 60.671 57.143 24.80 0.00 36.79 3.35
499 537 0.318441 GCCGGCATACATCTAGCTGA 59.682 55.000 24.80 0.00 36.79 4.26
500 538 0.033920 TGCCGGCATACATCTAGCTG 59.966 55.000 29.03 0.00 0.00 4.24
501 539 0.758734 TTGCCGGCATACATCTAGCT 59.241 50.000 33.25 0.00 0.00 3.32
502 540 0.868406 GTTGCCGGCATACATCTAGC 59.132 55.000 33.25 3.09 0.00 3.42
503 541 1.512926 GGTTGCCGGCATACATCTAG 58.487 55.000 33.25 0.00 0.00 2.43
504 542 0.107831 GGGTTGCCGGCATACATCTA 59.892 55.000 33.25 10.98 0.00 1.98
505 543 1.152963 GGGTTGCCGGCATACATCT 60.153 57.895 33.25 0.00 0.00 2.90
506 544 2.193536 GGGGTTGCCGGCATACATC 61.194 63.158 33.25 22.57 0.00 3.06
507 545 2.123897 GGGGTTGCCGGCATACAT 60.124 61.111 33.25 0.00 0.00 2.29
508 546 4.434354 GGGGGTTGCCGGCATACA 62.434 66.667 33.25 13.76 0.00 2.29
509 547 2.676163 CTAGGGGGTTGCCGGCATAC 62.676 65.000 33.25 27.89 0.00 2.39
510 548 2.367107 TAGGGGGTTGCCGGCATA 60.367 61.111 33.25 18.58 0.00 3.14
511 549 3.809013 CTAGGGGGTTGCCGGCAT 61.809 66.667 33.25 17.38 0.00 4.40
513 551 4.484872 GTCTAGGGGGTTGCCGGC 62.485 72.222 22.73 22.73 0.00 6.13
514 552 1.848886 AAAGTCTAGGGGGTTGCCGG 61.849 60.000 0.00 0.00 0.00 6.13
515 553 0.676782 CAAAGTCTAGGGGGTTGCCG 60.677 60.000 0.00 0.00 0.00 5.69
516 554 0.965866 GCAAAGTCTAGGGGGTTGCC 60.966 60.000 9.03 0.00 38.88 4.52
517 555 0.965866 GGCAAAGTCTAGGGGGTTGC 60.966 60.000 10.84 10.84 42.99 4.17
518 556 0.323451 GGGCAAAGTCTAGGGGGTTG 60.323 60.000 0.00 0.00 0.00 3.77
519 557 1.506907 GGGGCAAAGTCTAGGGGGTT 61.507 60.000 0.00 0.00 0.00 4.11
520 558 1.929088 GGGGCAAAGTCTAGGGGGT 60.929 63.158 0.00 0.00 0.00 4.95
521 559 1.619669 AGGGGCAAAGTCTAGGGGG 60.620 63.158 0.00 0.00 0.00 5.40
522 560 0.914417 TCAGGGGCAAAGTCTAGGGG 60.914 60.000 0.00 0.00 0.00 4.79
523 561 1.141858 GATCAGGGGCAAAGTCTAGGG 59.858 57.143 0.00 0.00 0.00 3.53
524 562 1.141858 GGATCAGGGGCAAAGTCTAGG 59.858 57.143 0.00 0.00 0.00 3.02
525 563 1.839994 TGGATCAGGGGCAAAGTCTAG 59.160 52.381 0.00 0.00 0.00 2.43
526 564 1.965414 TGGATCAGGGGCAAAGTCTA 58.035 50.000 0.00 0.00 0.00 2.59
527 565 1.075601 TTGGATCAGGGGCAAAGTCT 58.924 50.000 0.00 0.00 0.00 3.24
528 566 1.177401 GTTGGATCAGGGGCAAAGTC 58.823 55.000 0.00 0.00 0.00 3.01
529 567 0.779997 AGTTGGATCAGGGGCAAAGT 59.220 50.000 0.00 0.00 0.00 2.66
530 568 1.180029 CAGTTGGATCAGGGGCAAAG 58.820 55.000 0.00 0.00 0.00 2.77
531 569 0.482446 ACAGTTGGATCAGGGGCAAA 59.518 50.000 0.00 0.00 0.00 3.68
532 570 0.482446 AACAGTTGGATCAGGGGCAA 59.518 50.000 0.00 0.00 0.00 4.52
533 571 0.251297 CAACAGTTGGATCAGGGGCA 60.251 55.000 5.25 0.00 0.00 5.36
534 572 2.571548 CAACAGTTGGATCAGGGGC 58.428 57.895 5.25 0.00 0.00 5.80
547 585 0.040157 CACGGCATCAACACCAACAG 60.040 55.000 0.00 0.00 0.00 3.16
564 603 0.094730 GATTTACGTCCGTGCTGCAC 59.905 55.000 22.38 22.38 0.00 4.57
565 604 0.319986 TGATTTACGTCCGTGCTGCA 60.320 50.000 0.00 0.00 0.00 4.41
566 605 0.370273 CTGATTTACGTCCGTGCTGC 59.630 55.000 1.98 0.00 0.00 5.25
569 608 2.268298 ACATCTGATTTACGTCCGTGC 58.732 47.619 1.98 0.00 0.00 5.34
572 612 2.670905 TGCAACATCTGATTTACGTCCG 59.329 45.455 0.00 0.00 0.00 4.79
596 636 0.238817 TTCAACCGCACCGTATTTGC 59.761 50.000 0.00 0.00 36.57 3.68
597 637 2.690173 TTTCAACCGCACCGTATTTG 57.310 45.000 0.00 0.00 0.00 2.32
598 638 2.814919 TGATTTCAACCGCACCGTATTT 59.185 40.909 0.00 0.00 0.00 1.40
600 640 1.735571 GTGATTTCAACCGCACCGTAT 59.264 47.619 0.00 0.00 0.00 3.06
601 641 1.149987 GTGATTTCAACCGCACCGTA 58.850 50.000 0.00 0.00 0.00 4.02
602 642 1.837538 CGTGATTTCAACCGCACCGT 61.838 55.000 0.00 0.00 0.00 4.83
603 643 1.154488 CGTGATTTCAACCGCACCG 60.154 57.895 0.00 0.00 0.00 4.94
604 644 0.802494 ATCGTGATTTCAACCGCACC 59.198 50.000 0.00 0.00 0.00 5.01
605 645 2.159627 AGAATCGTGATTTCAACCGCAC 59.840 45.455 0.00 0.00 0.00 5.34
606 646 2.422597 AGAATCGTGATTTCAACCGCA 58.577 42.857 0.00 0.00 0.00 5.69
607 647 3.163594 CAAGAATCGTGATTTCAACCGC 58.836 45.455 0.00 0.00 0.00 5.68
608 648 4.394795 GACAAGAATCGTGATTTCAACCG 58.605 43.478 2.68 0.00 0.00 4.44
609 649 4.215399 TGGACAAGAATCGTGATTTCAACC 59.785 41.667 2.68 0.00 0.00 3.77
610 650 5.356882 TGGACAAGAATCGTGATTTCAAC 57.643 39.130 2.68 0.00 0.00 3.18
611 651 5.473162 ACATGGACAAGAATCGTGATTTCAA 59.527 36.000 2.68 0.00 0.00 2.69
613 653 5.551760 ACATGGACAAGAATCGTGATTTC 57.448 39.130 2.68 0.00 0.00 2.17
621 776 8.571336 CAATTATTCCCTACATGGACAAGAATC 58.429 37.037 0.00 0.00 38.35 2.52
628 783 5.183904 GGCATCAATTATTCCCTACATGGAC 59.816 44.000 0.00 0.00 38.35 4.02
635 790 3.392947 TGGTCGGCATCAATTATTCCCTA 59.607 43.478 0.00 0.00 0.00 3.53
636 791 2.174639 TGGTCGGCATCAATTATTCCCT 59.825 45.455 0.00 0.00 0.00 4.20
652 807 4.317139 CGAATCTTGCTTAACGTATGGTCG 60.317 45.833 0.00 0.00 0.00 4.79
655 810 6.764877 ATACGAATCTTGCTTAACGTATGG 57.235 37.500 0.00 0.00 42.44 2.74
661 816 5.672856 CGCTGAAATACGAATCTTGCTTAAC 59.327 40.000 0.00 0.00 0.00 2.01
714 874 1.596954 CCCGTGAGTTGCAACGAAAAG 60.597 52.381 23.21 14.28 0.00 2.27
743 904 2.635915 TCCCTTTTCTCTTTACCAGCGA 59.364 45.455 0.00 0.00 0.00 4.93
744 905 3.053831 TCCCTTTTCTCTTTACCAGCG 57.946 47.619 0.00 0.00 0.00 5.18
745 906 5.070685 TCTTTCCCTTTTCTCTTTACCAGC 58.929 41.667 0.00 0.00 0.00 4.85
889 1058 0.392461 TCCGGTTGCAGTGGATAAGC 60.392 55.000 0.00 0.00 0.00 3.09
904 1073 3.866582 CCTAGCTGGGCCTTCCGG 61.867 72.222 1.92 0.00 44.90 5.14
906 1075 0.691413 ACTACCTAGCTGGGCCTTCC 60.691 60.000 17.38 0.00 41.11 3.46
908 1077 2.797285 ATACTACCTAGCTGGGCCTT 57.203 50.000 17.38 2.43 41.11 4.35
924 1093 3.186909 TGCGGCGCATGATAGATAATAC 58.813 45.455 33.07 0.00 31.71 1.89
945 1115 2.446848 CGAGGATGAGGTGGGCCAT 61.447 63.158 10.70 0.00 37.19 4.40
1051 1225 1.674962 GCGGTGGAGTGTAGTAGGTAG 59.325 57.143 0.00 0.00 0.00 3.18
1052 1226 1.683011 GGCGGTGGAGTGTAGTAGGTA 60.683 57.143 0.00 0.00 0.00 3.08
1053 1227 0.969409 GGCGGTGGAGTGTAGTAGGT 60.969 60.000 0.00 0.00 0.00 3.08
1054 1228 0.968901 TGGCGGTGGAGTGTAGTAGG 60.969 60.000 0.00 0.00 0.00 3.18
1055 1229 0.172803 GTGGCGGTGGAGTGTAGTAG 59.827 60.000 0.00 0.00 0.00 2.57
1056 1230 1.252904 GGTGGCGGTGGAGTGTAGTA 61.253 60.000 0.00 0.00 0.00 1.82
1057 1231 2.580601 GGTGGCGGTGGAGTGTAGT 61.581 63.158 0.00 0.00 0.00 2.73
1058 1232 2.264794 GGTGGCGGTGGAGTGTAG 59.735 66.667 0.00 0.00 0.00 2.74
1059 1233 2.524640 TGGTGGCGGTGGAGTGTA 60.525 61.111 0.00 0.00 0.00 2.90
1094 1268 3.615811 TGCCCCTGGAGGAGGAGT 61.616 66.667 0.00 0.00 46.33 3.85
1129 1303 1.091771 ATGACCGCTGCTGAAATCCG 61.092 55.000 0.00 0.00 0.00 4.18
1588 1855 5.717119 CTGAAATGAAAATCCAGTGGAAGG 58.283 41.667 17.71 0.00 34.34 3.46
1618 1924 9.434420 TGAGTAGTAGTAGTAAGACAGAACTTC 57.566 37.037 0.00 0.00 0.00 3.01
1637 1950 8.444783 AGGACTATGAATGACTCTATGAGTAGT 58.555 37.037 0.00 0.00 43.53 2.73
1649 1962 7.601886 CAGATATTGGTCAGGACTATGAATGAC 59.398 40.741 0.00 0.00 41.03 3.06
1650 1963 7.510343 TCAGATATTGGTCAGGACTATGAATGA 59.490 37.037 0.00 0.00 0.00 2.57
2031 2943 9.994432 GAAAAACATGGACAGAAGATTACTATG 57.006 33.333 0.00 0.00 0.00 2.23
2035 2947 7.454260 AGGAAAAACATGGACAGAAGATTAC 57.546 36.000 0.00 0.00 0.00 1.89
2037 2949 6.983906 AAGGAAAAACATGGACAGAAGATT 57.016 33.333 0.00 0.00 0.00 2.40
2038 2950 6.983906 AAAGGAAAAACATGGACAGAAGAT 57.016 33.333 0.00 0.00 0.00 2.40
2040 2952 5.234972 GCAAAAGGAAAAACATGGACAGAAG 59.765 40.000 0.00 0.00 0.00 2.85
2043 2976 4.440880 TGCAAAAGGAAAAACATGGACAG 58.559 39.130 0.00 0.00 0.00 3.51
2066 3014 4.565360 GCTGGATACCTGCATGCA 57.435 55.556 21.29 21.29 45.75 3.96
2140 3088 1.227497 GAGCCTCTCTTCCATGCCG 60.227 63.158 0.00 0.00 0.00 5.69
2227 3177 8.742777 CCATTCCATTCCATTACATTACATAGG 58.257 37.037 0.00 0.00 0.00 2.57
2233 3183 7.287466 CAGGTTCCATTCCATTCCATTACATTA 59.713 37.037 0.00 0.00 0.00 1.90
2238 3188 3.960102 GCAGGTTCCATTCCATTCCATTA 59.040 43.478 0.00 0.00 0.00 1.90
2241 3191 1.076841 TGCAGGTTCCATTCCATTCCA 59.923 47.619 0.00 0.00 0.00 3.53
2242 3192 1.478105 GTGCAGGTTCCATTCCATTCC 59.522 52.381 0.00 0.00 0.00 3.01
2243 3193 2.450476 AGTGCAGGTTCCATTCCATTC 58.550 47.619 0.00 0.00 0.00 2.67
2244 3194 2.564062 CAAGTGCAGGTTCCATTCCATT 59.436 45.455 0.00 0.00 0.00 3.16
2248 3198 3.412386 AGTACAAGTGCAGGTTCCATTC 58.588 45.455 0.00 0.00 0.00 2.67
2278 3228 9.329913 CAACAGTAAAATGCTTACATGTTAGAC 57.670 33.333 15.80 7.54 36.78 2.59
2280 3230 7.807433 TGCAACAGTAAAATGCTTACATGTTAG 59.193 33.333 2.30 5.38 36.78 2.34
2299 3263 1.605710 CCTCCACTTGAACTGCAACAG 59.394 52.381 0.00 0.00 37.52 3.16
2303 3267 1.810031 CGTTCCTCCACTTGAACTGCA 60.810 52.381 0.00 0.00 38.93 4.41
2359 3323 1.688772 CATGGATCAGGCTTCCCTTG 58.311 55.000 2.82 1.38 40.33 3.61
2456 3421 0.039074 TAACCCAAAACGGCATTGCG 60.039 50.000 1.91 0.85 0.00 4.85
2459 3424 4.882842 AGATTTAACCCAAAACGGCATT 57.117 36.364 0.00 0.00 0.00 3.56
2460 3425 4.282195 TCAAGATTTAACCCAAAACGGCAT 59.718 37.500 0.00 0.00 0.00 4.40
2461 3426 3.637229 TCAAGATTTAACCCAAAACGGCA 59.363 39.130 0.00 0.00 0.00 5.69
2462 3427 4.245845 TCAAGATTTAACCCAAAACGGC 57.754 40.909 0.00 0.00 0.00 5.68
2463 3428 4.684242 GCTTCAAGATTTAACCCAAAACGG 59.316 41.667 0.00 0.00 0.00 4.44
2464 3429 5.285651 TGCTTCAAGATTTAACCCAAAACG 58.714 37.500 0.00 0.00 0.00 3.60
2494 3461 8.489559 CAACATCAATCAATGGTTAAACACTTG 58.510 33.333 0.00 2.48 0.00 3.16
2572 3541 4.235360 AGGTTATTTTCGATCGATAGGCG 58.765 43.478 20.18 0.00 42.69 5.52
2577 3546 9.706691 ACATACATAAGGTTATTTTCGATCGAT 57.293 29.630 20.18 6.81 0.00 3.59
2704 3681 7.781693 AGCAACTGAATGAAGGATATAAACCAT 59.218 33.333 0.00 0.00 0.00 3.55
2755 3732 1.412710 TGCAAAAACACCGGCCATTTA 59.587 42.857 0.00 0.00 0.00 1.40
2801 3778 1.296056 AACGGCAGAACGCGCTTAAT 61.296 50.000 5.73 0.00 43.84 1.40
2905 3885 7.914427 ACATCTAGTACACCCTGATCATTTA 57.086 36.000 0.00 0.00 0.00 1.40
2915 3895 5.018539 TGTATGCAACATCTAGTACACCC 57.981 43.478 0.00 0.00 31.43 4.61
2962 3945 3.599285 TTCTAACTGGCGCACCCGG 62.599 63.158 10.83 0.00 46.17 5.73
2963 3946 2.047655 TTCTAACTGGCGCACCCG 60.048 61.111 10.83 0.00 35.87 5.28
2964 3947 0.107654 ATCTTCTAACTGGCGCACCC 60.108 55.000 10.83 0.00 33.59 4.61
2965 3948 1.009829 CATCTTCTAACTGGCGCACC 58.990 55.000 10.83 0.00 0.00 5.01
3243 4282 2.799126 ATGGCAGTAACAATTCCCGA 57.201 45.000 0.00 0.00 0.00 5.14
3244 4283 3.243068 GCTAATGGCAGTAACAATTCCCG 60.243 47.826 0.00 0.00 41.35 5.14
3457 4499 5.480642 TTGATTACCCAAAACATGCATGT 57.519 34.783 26.61 26.61 44.20 3.21
3514 4556 5.245301 GCCTGGGTTTAACTTATCAAGGTTT 59.755 40.000 0.00 0.00 0.00 3.27
3515 4557 4.770531 GCCTGGGTTTAACTTATCAAGGTT 59.229 41.667 0.00 0.00 0.00 3.50
3516 4558 4.341487 GCCTGGGTTTAACTTATCAAGGT 58.659 43.478 0.00 0.00 0.00 3.50
3517 4559 3.377172 CGCCTGGGTTTAACTTATCAAGG 59.623 47.826 0.00 0.00 0.00 3.61
3518 4560 3.181500 GCGCCTGGGTTTAACTTATCAAG 60.181 47.826 0.00 0.00 0.00 3.02
3519 4561 2.750712 GCGCCTGGGTTTAACTTATCAA 59.249 45.455 0.00 0.00 0.00 2.57
3520 4562 2.290387 TGCGCCTGGGTTTAACTTATCA 60.290 45.455 4.18 0.00 0.00 2.15
3521 4563 2.361789 TGCGCCTGGGTTTAACTTATC 58.638 47.619 4.18 0.00 0.00 1.75
3522 4564 2.500392 TGCGCCTGGGTTTAACTTAT 57.500 45.000 4.18 0.00 0.00 1.73
3523 4565 2.088423 CATGCGCCTGGGTTTAACTTA 58.912 47.619 4.18 0.00 0.00 2.24
3524 4566 0.887933 CATGCGCCTGGGTTTAACTT 59.112 50.000 4.18 0.00 0.00 2.66
3525 4567 0.037590 TCATGCGCCTGGGTTTAACT 59.962 50.000 12.90 0.00 0.00 2.24
3526 4568 1.102978 ATCATGCGCCTGGGTTTAAC 58.897 50.000 12.90 0.00 0.00 2.01
3527 4569 1.476085 CAATCATGCGCCTGGGTTTAA 59.524 47.619 12.90 0.00 0.00 1.52
3528 4570 1.102154 CAATCATGCGCCTGGGTTTA 58.898 50.000 12.90 0.00 0.00 2.01
3584 4626 7.784550 ACTCGGGTATACTTAATTTGGTACCTA 59.215 37.037 14.36 1.78 33.72 3.08
3585 4627 6.612863 ACTCGGGTATACTTAATTTGGTACCT 59.387 38.462 14.36 0.00 33.72 3.08
3586 4628 6.820335 ACTCGGGTATACTTAATTTGGTACC 58.180 40.000 4.43 4.43 0.00 3.34
3587 4629 9.987272 AATACTCGGGTATACTTAATTTGGTAC 57.013 33.333 8.72 0.00 37.63 3.34
3607 4649 0.640768 GCGCACACGTGAGAATACTC 59.359 55.000 25.01 0.00 42.83 2.59
3675 4718 2.615912 GCTGAGCTACCCATTTAGCAAG 59.384 50.000 0.00 3.43 46.04 4.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.