Multiple sequence alignment - TraesCS7A01G568500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G568500 chr7A 100.000 2807 0 0 1 2807 736405752 736402946 0.000000e+00 5184.0
1 TraesCS7A01G568500 chr7D 98.768 2353 27 1 455 2807 23561318 23563668 0.000000e+00 4183.0
2 TraesCS7A01G568500 chr7D 98.683 2353 29 1 455 2807 135767329 135769679 0.000000e+00 4172.0
3 TraesCS7A01G568500 chr7D 98.683 2353 28 2 455 2807 14172774 14170425 0.000000e+00 4170.0
4 TraesCS7A01G568500 chr7D 98.389 2359 33 4 449 2807 8079027 8081380 0.000000e+00 4141.0
5 TraesCS7A01G568500 chr7D 98.343 2353 36 2 455 2807 400293439 400291090 0.000000e+00 4126.0
6 TraesCS7A01G568500 chr2D 98.683 2353 29 1 455 2807 35063256 35060906 0.000000e+00 4172.0
7 TraesCS7A01G568500 chr2D 98.511 2351 30 3 457 2807 70661127 70658782 0.000000e+00 4143.0
8 TraesCS7A01G568500 chrUn 98.514 2356 31 3 453 2807 95716946 95719298 0.000000e+00 4154.0
9 TraesCS7A01G568500 chr5D 98.510 2349 33 1 456 2804 460676228 460678574 0.000000e+00 4143.0
10 TraesCS7A01G568500 chr5D 74.074 189 41 4 140 320 447633100 447633288 1.390000e-08 71.3
11 TraesCS7A01G568500 chr7B 98.310 355 5 1 104 458 744194465 744194818 3.070000e-174 621.0
12 TraesCS7A01G568500 chr5B 71.622 296 67 14 162 449 546567042 546567328 6.490000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G568500 chr7A 736402946 736405752 2806 True 5184 5184 100.000 1 2807 1 chr7A.!!$R1 2806
1 TraesCS7A01G568500 chr7D 23561318 23563668 2350 False 4183 4183 98.768 455 2807 1 chr7D.!!$F2 2352
2 TraesCS7A01G568500 chr7D 135767329 135769679 2350 False 4172 4172 98.683 455 2807 1 chr7D.!!$F3 2352
3 TraesCS7A01G568500 chr7D 14170425 14172774 2349 True 4170 4170 98.683 455 2807 1 chr7D.!!$R1 2352
4 TraesCS7A01G568500 chr7D 8079027 8081380 2353 False 4141 4141 98.389 449 2807 1 chr7D.!!$F1 2358
5 TraesCS7A01G568500 chr7D 400291090 400293439 2349 True 4126 4126 98.343 455 2807 1 chr7D.!!$R2 2352
6 TraesCS7A01G568500 chr2D 35060906 35063256 2350 True 4172 4172 98.683 455 2807 1 chr2D.!!$R1 2352
7 TraesCS7A01G568500 chr2D 70658782 70661127 2345 True 4143 4143 98.511 457 2807 1 chr2D.!!$R2 2350
8 TraesCS7A01G568500 chrUn 95716946 95719298 2352 False 4154 4154 98.514 453 2807 1 chrUn.!!$F1 2354
9 TraesCS7A01G568500 chr5D 460676228 460678574 2346 False 4143 4143 98.510 456 2804 1 chr5D.!!$F2 2348

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
227 228 0.029567 CCTCACCTGCGATCGACTAC 59.970 60.0 21.57 0.68 0.0 2.73 F
344 345 0.038166 TCATCCAACTCCAAGCCACC 59.962 55.0 0.00 0.00 0.0 4.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1108 1110 2.161855 TGAATTTGTAGCAGCACCAGG 58.838 47.619 0.0 0.0 0.0 4.45 R
2281 2283 2.921834 AGTCTGCTCTGTACCCCTTA 57.078 50.000 0.0 0.0 0.0 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 2.502142 TGCTCTGGCATTGATCTGTT 57.498 45.000 0.00 0.00 44.28 3.16
31 32 2.362736 TGCTCTGGCATTGATCTGTTC 58.637 47.619 0.00 0.00 44.28 3.18
32 33 2.290450 TGCTCTGGCATTGATCTGTTCA 60.290 45.455 0.00 0.00 44.28 3.18
33 34 2.950309 GCTCTGGCATTGATCTGTTCAT 59.050 45.455 0.00 0.00 38.54 2.57
34 35 3.380637 GCTCTGGCATTGATCTGTTCATT 59.619 43.478 0.00 0.00 38.54 2.57
35 36 4.733815 GCTCTGGCATTGATCTGTTCATTG 60.734 45.833 0.00 6.35 38.28 2.82
36 37 4.338012 TCTGGCATTGATCTGTTCATTGT 58.662 39.130 10.55 0.00 37.79 2.71
37 38 5.499313 TCTGGCATTGATCTGTTCATTGTA 58.501 37.500 10.55 3.03 37.79 2.41
38 39 6.124340 TCTGGCATTGATCTGTTCATTGTAT 58.876 36.000 10.55 0.00 37.79 2.29
39 40 6.261603 TCTGGCATTGATCTGTTCATTGTATC 59.738 38.462 10.55 0.00 37.79 2.24
40 41 5.007921 TGGCATTGATCTGTTCATTGTATCG 59.992 40.000 10.55 0.00 37.79 2.92
41 42 4.908156 GCATTGATCTGTTCATTGTATCGC 59.092 41.667 10.55 0.00 37.79 4.58
42 43 5.504501 GCATTGATCTGTTCATTGTATCGCA 60.505 40.000 10.55 0.00 37.79 5.10
43 44 5.723492 TTGATCTGTTCATTGTATCGCAG 57.277 39.130 0.00 0.00 33.34 5.18
44 45 4.122046 TGATCTGTTCATTGTATCGCAGG 58.878 43.478 0.00 0.00 0.00 4.85
45 46 3.885724 TCTGTTCATTGTATCGCAGGA 57.114 42.857 0.00 0.00 0.00 3.86
46 47 3.521560 TCTGTTCATTGTATCGCAGGAC 58.478 45.455 0.00 0.00 0.00 3.85
47 48 3.056179 TCTGTTCATTGTATCGCAGGACA 60.056 43.478 0.00 0.00 0.00 4.02
48 49 3.000041 TGTTCATTGTATCGCAGGACAC 59.000 45.455 0.00 0.00 0.00 3.67
49 50 3.000041 GTTCATTGTATCGCAGGACACA 59.000 45.455 0.00 0.00 0.00 3.72
50 51 2.892374 TCATTGTATCGCAGGACACAG 58.108 47.619 0.00 0.00 0.00 3.66
51 52 1.328680 CATTGTATCGCAGGACACAGC 59.671 52.381 0.00 0.00 0.00 4.40
52 53 0.320050 TTGTATCGCAGGACACAGCA 59.680 50.000 0.00 0.00 0.00 4.41
53 54 0.536724 TGTATCGCAGGACACAGCAT 59.463 50.000 0.00 0.00 0.00 3.79
54 55 1.066215 TGTATCGCAGGACACAGCATT 60.066 47.619 0.00 0.00 0.00 3.56
55 56 1.594862 GTATCGCAGGACACAGCATTC 59.405 52.381 0.00 0.00 0.00 2.67
56 57 0.036105 ATCGCAGGACACAGCATTCA 60.036 50.000 0.00 0.00 0.00 2.57
57 58 0.036105 TCGCAGGACACAGCATTCAT 60.036 50.000 0.00 0.00 0.00 2.57
58 59 0.806868 CGCAGGACACAGCATTCATT 59.193 50.000 0.00 0.00 0.00 2.57
59 60 1.202110 CGCAGGACACAGCATTCATTC 60.202 52.381 0.00 0.00 0.00 2.67
60 61 1.814394 GCAGGACACAGCATTCATTCA 59.186 47.619 0.00 0.00 0.00 2.57
61 62 2.415090 GCAGGACACAGCATTCATTCAC 60.415 50.000 0.00 0.00 0.00 3.18
62 63 3.079578 CAGGACACAGCATTCATTCACT 58.920 45.455 0.00 0.00 0.00 3.41
63 64 4.256110 CAGGACACAGCATTCATTCACTA 58.744 43.478 0.00 0.00 0.00 2.74
64 65 4.880120 CAGGACACAGCATTCATTCACTAT 59.120 41.667 0.00 0.00 0.00 2.12
65 66 6.051074 CAGGACACAGCATTCATTCACTATA 58.949 40.000 0.00 0.00 0.00 1.31
66 67 6.539826 CAGGACACAGCATTCATTCACTATAA 59.460 38.462 0.00 0.00 0.00 0.98
67 68 6.765036 AGGACACAGCATTCATTCACTATAAG 59.235 38.462 0.00 0.00 0.00 1.73
68 69 6.369059 ACACAGCATTCATTCACTATAAGC 57.631 37.500 0.00 0.00 0.00 3.09
69 70 6.118170 ACACAGCATTCATTCACTATAAGCT 58.882 36.000 0.00 0.00 0.00 3.74
70 71 7.275183 ACACAGCATTCATTCACTATAAGCTA 58.725 34.615 0.00 0.00 0.00 3.32
71 72 7.440556 ACACAGCATTCATTCACTATAAGCTAG 59.559 37.037 0.00 0.00 0.00 3.42
72 73 6.426328 ACAGCATTCATTCACTATAAGCTAGC 59.574 38.462 6.62 6.62 0.00 3.42
73 74 6.649973 CAGCATTCATTCACTATAAGCTAGCT 59.350 38.462 12.68 12.68 0.00 3.32
74 75 6.649973 AGCATTCATTCACTATAAGCTAGCTG 59.350 38.462 20.16 8.23 0.00 4.24
75 76 6.620303 GCATTCATTCACTATAAGCTAGCTGC 60.620 42.308 20.16 8.35 43.29 5.25
76 77 5.535753 TCATTCACTATAAGCTAGCTGCA 57.464 39.130 20.16 10.06 45.94 4.41
77 78 5.292765 TCATTCACTATAAGCTAGCTGCAC 58.707 41.667 20.16 0.00 45.94 4.57
78 79 5.069648 TCATTCACTATAAGCTAGCTGCACT 59.930 40.000 20.16 4.74 45.94 4.40
79 80 5.344743 TTCACTATAAGCTAGCTGCACTT 57.655 39.130 20.16 4.30 45.94 3.16
80 81 6.465439 TTCACTATAAGCTAGCTGCACTTA 57.535 37.500 20.16 6.79 45.94 2.24
81 82 6.078202 TCACTATAAGCTAGCTGCACTTAG 57.922 41.667 20.16 15.90 45.94 2.18
82 83 4.683781 CACTATAAGCTAGCTGCACTTAGC 59.316 45.833 20.16 14.13 45.94 3.09
105 106 6.963796 GCATATATATGATGCTAACCTTGGC 58.036 40.000 24.06 2.12 45.14 4.52
106 107 6.293081 GCATATATATGATGCTAACCTTGGCG 60.293 42.308 24.06 0.00 45.14 5.69
107 108 1.593196 TATGATGCTAACCTTGGCGC 58.407 50.000 0.00 0.00 37.49 6.53
108 109 1.103398 ATGATGCTAACCTTGGCGCC 61.103 55.000 22.73 22.73 37.49 6.53
109 110 2.440247 ATGCTAACCTTGGCGCCC 60.440 61.111 26.77 5.97 37.49 6.13
110 111 3.280938 ATGCTAACCTTGGCGCCCA 62.281 57.895 26.77 13.22 37.49 5.36
111 112 2.675075 GCTAACCTTGGCGCCCAA 60.675 61.111 26.77 17.05 41.69 4.12
125 126 3.846180 CCAAGATTGGGATGCCGG 58.154 61.111 0.00 0.00 44.70 6.13
126 127 1.227102 CCAAGATTGGGATGCCGGA 59.773 57.895 5.05 0.00 44.70 5.14
127 128 1.103398 CCAAGATTGGGATGCCGGAC 61.103 60.000 5.05 0.00 44.70 4.79
128 129 0.107017 CAAGATTGGGATGCCGGACT 60.107 55.000 5.05 0.00 0.00 3.85
129 130 0.107017 AAGATTGGGATGCCGGACTG 60.107 55.000 5.05 0.00 0.00 3.51
130 131 2.124151 ATTGGGATGCCGGACTGC 60.124 61.111 5.05 0.00 0.00 4.40
131 132 4.776322 TTGGGATGCCGGACTGCG 62.776 66.667 5.05 0.00 0.00 5.18
134 135 4.451150 GGATGCCGGACTGCGACA 62.451 66.667 5.05 0.00 0.00 4.35
135 136 3.188786 GATGCCGGACTGCGACAC 61.189 66.667 5.05 0.00 0.00 3.67
136 137 3.932580 GATGCCGGACTGCGACACA 62.933 63.158 5.05 0.00 0.00 3.72
137 138 3.529341 ATGCCGGACTGCGACACAA 62.529 57.895 5.05 0.00 0.00 3.33
138 139 3.414700 GCCGGACTGCGACACAAG 61.415 66.667 5.05 0.00 0.00 3.16
139 140 3.414700 CCGGACTGCGACACAAGC 61.415 66.667 0.00 0.00 0.00 4.01
140 141 2.356313 CGGACTGCGACACAAGCT 60.356 61.111 0.00 0.00 35.28 3.74
141 142 2.661566 CGGACTGCGACACAAGCTG 61.662 63.158 0.00 0.00 39.09 4.24
142 143 2.553268 GACTGCGACACAAGCTGC 59.447 61.111 0.00 0.00 37.11 5.25
143 144 3.287121 GACTGCGACACAAGCTGCG 62.287 63.158 0.00 0.00 37.11 5.18
144 145 4.081030 CTGCGACACAAGCTGCGG 62.081 66.667 0.00 0.00 35.28 5.69
147 148 3.648982 CGACACAAGCTGCGGCAA 61.649 61.111 21.93 0.00 41.70 4.52
148 149 2.050985 GACACAAGCTGCGGCAAC 60.051 61.111 21.93 0.00 41.70 4.17
165 166 4.173971 CGTAAGTGTGCCGTACCC 57.826 61.111 0.00 0.00 0.00 3.69
166 167 1.446618 CGTAAGTGTGCCGTACCCC 60.447 63.158 0.00 0.00 0.00 4.95
167 168 1.880819 CGTAAGTGTGCCGTACCCCT 61.881 60.000 0.00 0.00 0.00 4.79
168 169 0.322648 GTAAGTGTGCCGTACCCCTT 59.677 55.000 0.00 0.00 0.00 3.95
169 170 0.322322 TAAGTGTGCCGTACCCCTTG 59.678 55.000 0.00 0.00 0.00 3.61
170 171 2.359478 GTGTGCCGTACCCCTTGG 60.359 66.667 0.00 0.00 37.80 3.61
204 205 4.101448 CTGCTACCGGCCAGGCTT 62.101 66.667 12.43 0.00 46.52 4.35
205 206 4.096003 TGCTACCGGCCAGGCTTC 62.096 66.667 12.43 0.00 46.52 3.86
206 207 4.096003 GCTACCGGCCAGGCTTCA 62.096 66.667 12.43 0.00 46.52 3.02
207 208 2.668632 CTACCGGCCAGGCTTCAA 59.331 61.111 12.43 0.00 46.52 2.69
208 209 1.745489 CTACCGGCCAGGCTTCAAC 60.745 63.158 12.43 0.00 46.52 3.18
209 210 3.262448 TACCGGCCAGGCTTCAACC 62.262 63.158 12.43 0.00 46.52 3.77
210 211 4.351054 CCGGCCAGGCTTCAACCT 62.351 66.667 12.43 0.00 42.30 3.50
211 212 2.747855 CGGCCAGGCTTCAACCTC 60.748 66.667 12.43 0.00 38.26 3.85
212 213 2.436109 GGCCAGGCTTCAACCTCA 59.564 61.111 12.43 0.00 38.26 3.86
213 214 1.973812 GGCCAGGCTTCAACCTCAC 60.974 63.158 12.43 0.00 38.26 3.51
214 215 1.973812 GCCAGGCTTCAACCTCACC 60.974 63.158 3.29 0.00 38.26 4.02
215 216 1.763770 CCAGGCTTCAACCTCACCT 59.236 57.895 0.00 0.00 38.26 4.00
216 217 0.607489 CCAGGCTTCAACCTCACCTG 60.607 60.000 0.00 0.00 46.10 4.00
217 218 1.073897 AGGCTTCAACCTCACCTGC 59.926 57.895 0.00 0.00 33.62 4.85
218 219 2.328099 GGCTTCAACCTCACCTGCG 61.328 63.158 0.00 0.00 0.00 5.18
219 220 1.301716 GCTTCAACCTCACCTGCGA 60.302 57.895 0.00 0.00 0.00 5.10
220 221 0.674895 GCTTCAACCTCACCTGCGAT 60.675 55.000 0.00 0.00 0.00 4.58
221 222 1.363744 CTTCAACCTCACCTGCGATC 58.636 55.000 0.00 0.00 0.00 3.69
222 223 0.389817 TTCAACCTCACCTGCGATCG 60.390 55.000 11.69 11.69 0.00 3.69
223 224 1.215382 CAACCTCACCTGCGATCGA 59.785 57.895 21.57 3.01 0.00 3.59
224 225 1.078759 CAACCTCACCTGCGATCGAC 61.079 60.000 21.57 10.98 0.00 4.20
225 226 1.251527 AACCTCACCTGCGATCGACT 61.252 55.000 21.57 0.00 0.00 4.18
226 227 0.393944 ACCTCACCTGCGATCGACTA 60.394 55.000 21.57 2.95 0.00 2.59
227 228 0.029567 CCTCACCTGCGATCGACTAC 59.970 60.000 21.57 0.68 0.00 2.73
228 229 0.316278 CTCACCTGCGATCGACTACG 60.316 60.000 21.57 3.49 41.26 3.51
229 230 1.298413 CACCTGCGATCGACTACGG 60.298 63.158 21.57 12.56 40.21 4.02
230 231 2.353607 CCTGCGATCGACTACGGC 60.354 66.667 21.57 0.00 40.21 5.68
231 232 2.407616 CTGCGATCGACTACGGCA 59.592 61.111 21.57 4.00 40.21 5.69
232 233 1.939785 CTGCGATCGACTACGGCAC 60.940 63.158 21.57 0.00 40.21 5.01
251 252 4.395583 GCACGGCTGCTGCTTGAC 62.396 66.667 15.64 6.11 40.63 3.18
252 253 2.974148 CACGGCTGCTGCTTGACA 60.974 61.111 15.64 0.00 39.59 3.58
260 261 3.052082 CTGCTTGACAGCCACGGG 61.052 66.667 0.00 0.00 46.74 5.28
261 262 4.641645 TGCTTGACAGCCACGGGG 62.642 66.667 0.00 0.00 46.74 5.73
271 272 3.966543 CCACGGGGCCTTCCAAGT 61.967 66.667 0.84 0.00 37.22 3.16
272 273 2.359975 CACGGGGCCTTCCAAGTC 60.360 66.667 0.84 0.00 37.22 3.01
273 274 3.647771 ACGGGGCCTTCCAAGTCC 61.648 66.667 0.84 0.00 37.22 3.85
274 275 3.330720 CGGGGCCTTCCAAGTCCT 61.331 66.667 0.84 0.00 37.22 3.85
275 276 2.677848 GGGGCCTTCCAAGTCCTC 59.322 66.667 0.84 0.00 37.22 3.71
276 277 2.269241 GGGCCTTCCAAGTCCTCG 59.731 66.667 0.84 0.00 35.00 4.63
277 278 2.291043 GGGCCTTCCAAGTCCTCGA 61.291 63.158 0.84 0.00 35.00 4.04
278 279 1.079057 GGCCTTCCAAGTCCTCGAC 60.079 63.158 0.00 0.00 0.00 4.20
279 280 1.671742 GCCTTCCAAGTCCTCGACA 59.328 57.895 0.00 0.00 34.60 4.35
280 281 0.250513 GCCTTCCAAGTCCTCGACAT 59.749 55.000 0.00 0.00 34.60 3.06
281 282 1.740718 GCCTTCCAAGTCCTCGACATC 60.741 57.143 0.00 0.00 34.60 3.06
282 283 1.827969 CCTTCCAAGTCCTCGACATCT 59.172 52.381 0.00 0.00 34.60 2.90
283 284 2.159170 CCTTCCAAGTCCTCGACATCTC 60.159 54.545 0.00 0.00 34.60 2.75
284 285 1.475403 TCCAAGTCCTCGACATCTCC 58.525 55.000 0.00 0.00 34.60 3.71
285 286 0.461961 CCAAGTCCTCGACATCTCCC 59.538 60.000 0.00 0.00 34.60 4.30
286 287 1.479709 CAAGTCCTCGACATCTCCCT 58.520 55.000 0.00 0.00 34.60 4.20
287 288 1.407258 CAAGTCCTCGACATCTCCCTC 59.593 57.143 0.00 0.00 34.60 4.30
288 289 0.106419 AGTCCTCGACATCTCCCTCC 60.106 60.000 0.00 0.00 34.60 4.30
289 290 0.395862 GTCCTCGACATCTCCCTCCA 60.396 60.000 0.00 0.00 32.09 3.86
290 291 0.106469 TCCTCGACATCTCCCTCCAG 60.106 60.000 0.00 0.00 0.00 3.86
291 292 1.112315 CCTCGACATCTCCCTCCAGG 61.112 65.000 0.00 0.00 0.00 4.45
292 293 0.106469 CTCGACATCTCCCTCCAGGA 60.106 60.000 0.00 0.00 44.91 3.86
293 294 0.395862 TCGACATCTCCCTCCAGGAC 60.396 60.000 0.00 0.00 40.93 3.85
294 295 0.684479 CGACATCTCCCTCCAGGACA 60.684 60.000 0.00 0.00 40.93 4.02
295 296 0.827368 GACATCTCCCTCCAGGACAC 59.173 60.000 0.00 0.00 40.93 3.67
296 297 0.618968 ACATCTCCCTCCAGGACACC 60.619 60.000 0.00 0.00 40.93 4.16
297 298 0.618680 CATCTCCCTCCAGGACACCA 60.619 60.000 0.00 0.00 40.93 4.17
298 299 0.618968 ATCTCCCTCCAGGACACCAC 60.619 60.000 0.00 0.00 40.93 4.16
299 300 1.536418 CTCCCTCCAGGACACCACA 60.536 63.158 0.00 0.00 40.93 4.17
300 301 1.831652 CTCCCTCCAGGACACCACAC 61.832 65.000 0.00 0.00 40.93 3.82
301 302 1.843376 CCCTCCAGGACACCACACT 60.843 63.158 0.00 0.00 38.24 3.55
302 303 1.372683 CCTCCAGGACACCACACTG 59.627 63.158 0.00 0.00 37.39 3.66
303 304 1.302033 CTCCAGGACACCACACTGC 60.302 63.158 0.00 0.00 0.00 4.40
304 305 2.666190 CCAGGACACCACACTGCG 60.666 66.667 0.00 0.00 0.00 5.18
305 306 3.349006 CAGGACACCACACTGCGC 61.349 66.667 0.00 0.00 0.00 6.09
306 307 4.969196 AGGACACCACACTGCGCG 62.969 66.667 0.00 0.00 0.00 6.86
308 309 2.355363 GACACCACACTGCGCGTA 60.355 61.111 8.43 0.71 0.00 4.42
309 310 1.952133 GACACCACACTGCGCGTAA 60.952 57.895 8.43 0.00 0.00 3.18
310 311 2.154427 GACACCACACTGCGCGTAAC 62.154 60.000 8.43 0.00 0.00 2.50
311 312 2.663852 ACCACACTGCGCGTAACC 60.664 61.111 8.43 0.00 0.00 2.85
312 313 2.663520 CCACACTGCGCGTAACCA 60.664 61.111 8.43 0.00 0.00 3.67
313 314 2.667318 CCACACTGCGCGTAACCAG 61.667 63.158 8.43 9.08 35.26 4.00
314 315 3.041940 ACACTGCGCGTAACCAGC 61.042 61.111 8.43 0.00 32.37 4.85
315 316 2.738521 CACTGCGCGTAACCAGCT 60.739 61.111 8.43 0.00 32.37 4.24
316 317 2.432628 ACTGCGCGTAACCAGCTC 60.433 61.111 8.43 0.00 32.37 4.09
317 318 3.188786 CTGCGCGTAACCAGCTCC 61.189 66.667 8.43 0.00 0.00 4.70
320 321 2.431942 CGCGTAACCAGCTCCGTT 60.432 61.111 0.00 1.56 0.00 4.44
321 322 2.025418 CGCGTAACCAGCTCCGTTT 61.025 57.895 0.00 0.00 0.00 3.60
322 323 1.785951 GCGTAACCAGCTCCGTTTC 59.214 57.895 1.21 0.00 0.00 2.78
323 324 0.669625 GCGTAACCAGCTCCGTTTCT 60.670 55.000 1.21 0.00 0.00 2.52
324 325 1.068474 CGTAACCAGCTCCGTTTCTG 58.932 55.000 1.21 0.00 0.00 3.02
325 326 1.604693 CGTAACCAGCTCCGTTTCTGT 60.605 52.381 1.21 0.00 0.00 3.41
326 327 2.067013 GTAACCAGCTCCGTTTCTGTC 58.933 52.381 1.21 0.00 0.00 3.51
327 328 0.468226 AACCAGCTCCGTTTCTGTCA 59.532 50.000 0.00 0.00 0.00 3.58
328 329 0.687354 ACCAGCTCCGTTTCTGTCAT 59.313 50.000 0.00 0.00 0.00 3.06
329 330 1.338200 ACCAGCTCCGTTTCTGTCATC 60.338 52.381 0.00 0.00 0.00 2.92
330 331 1.363744 CAGCTCCGTTTCTGTCATCC 58.636 55.000 0.00 0.00 0.00 3.51
331 332 0.976641 AGCTCCGTTTCTGTCATCCA 59.023 50.000 0.00 0.00 0.00 3.41
332 333 1.347707 AGCTCCGTTTCTGTCATCCAA 59.652 47.619 0.00 0.00 0.00 3.53
333 334 1.464997 GCTCCGTTTCTGTCATCCAAC 59.535 52.381 0.00 0.00 0.00 3.77
334 335 2.872038 GCTCCGTTTCTGTCATCCAACT 60.872 50.000 0.00 0.00 0.00 3.16
335 336 2.996621 CTCCGTTTCTGTCATCCAACTC 59.003 50.000 0.00 0.00 0.00 3.01
336 337 2.076863 CCGTTTCTGTCATCCAACTCC 58.923 52.381 0.00 0.00 0.00 3.85
337 338 2.549992 CCGTTTCTGTCATCCAACTCCA 60.550 50.000 0.00 0.00 0.00 3.86
338 339 3.138304 CGTTTCTGTCATCCAACTCCAA 58.862 45.455 0.00 0.00 0.00 3.53
339 340 3.187227 CGTTTCTGTCATCCAACTCCAAG 59.813 47.826 0.00 0.00 0.00 3.61
340 341 2.479566 TCTGTCATCCAACTCCAAGC 57.520 50.000 0.00 0.00 0.00 4.01
341 342 1.003580 TCTGTCATCCAACTCCAAGCC 59.996 52.381 0.00 0.00 0.00 4.35
342 343 0.770499 TGTCATCCAACTCCAAGCCA 59.230 50.000 0.00 0.00 0.00 4.75
343 344 1.168714 GTCATCCAACTCCAAGCCAC 58.831 55.000 0.00 0.00 0.00 5.01
344 345 0.038166 TCATCCAACTCCAAGCCACC 59.962 55.000 0.00 0.00 0.00 4.61
345 346 0.038744 CATCCAACTCCAAGCCACCT 59.961 55.000 0.00 0.00 0.00 4.00
346 347 0.329596 ATCCAACTCCAAGCCACCTC 59.670 55.000 0.00 0.00 0.00 3.85
347 348 1.303643 CCAACTCCAAGCCACCTCC 60.304 63.158 0.00 0.00 0.00 4.30
348 349 1.455849 CAACTCCAAGCCACCTCCA 59.544 57.895 0.00 0.00 0.00 3.86
349 350 0.607489 CAACTCCAAGCCACCTCCAG 60.607 60.000 0.00 0.00 0.00 3.86
350 351 0.768221 AACTCCAAGCCACCTCCAGA 60.768 55.000 0.00 0.00 0.00 3.86
351 352 1.197430 ACTCCAAGCCACCTCCAGAG 61.197 60.000 0.00 0.00 0.00 3.35
352 353 0.906756 CTCCAAGCCACCTCCAGAGA 60.907 60.000 0.00 0.00 0.00 3.10
353 354 0.252881 TCCAAGCCACCTCCAGAGAT 60.253 55.000 0.00 0.00 0.00 2.75
354 355 0.179936 CCAAGCCACCTCCAGAGATC 59.820 60.000 0.00 0.00 0.00 2.75
355 356 1.202330 CAAGCCACCTCCAGAGATCT 58.798 55.000 0.00 0.00 0.00 2.75
356 357 1.558756 CAAGCCACCTCCAGAGATCTT 59.441 52.381 0.00 0.00 0.00 2.40
357 358 1.494960 AGCCACCTCCAGAGATCTTC 58.505 55.000 0.00 0.00 0.00 2.87
358 359 1.008206 AGCCACCTCCAGAGATCTTCT 59.992 52.381 0.00 0.00 36.25 2.85
359 360 1.412343 GCCACCTCCAGAGATCTTCTC 59.588 57.143 0.00 0.00 43.70 2.87
370 371 4.729227 GAGATCTTCTCTCCTTCCGTTT 57.271 45.455 0.00 0.00 44.06 3.60
371 372 5.079689 GAGATCTTCTCTCCTTCCGTTTT 57.920 43.478 0.00 0.00 44.06 2.43
372 373 6.210287 GAGATCTTCTCTCCTTCCGTTTTA 57.790 41.667 0.00 0.00 44.06 1.52
373 374 6.215495 AGATCTTCTCTCCTTCCGTTTTAG 57.785 41.667 0.00 0.00 0.00 1.85
374 375 5.717654 AGATCTTCTCTCCTTCCGTTTTAGT 59.282 40.000 0.00 0.00 0.00 2.24
375 376 5.135508 TCTTCTCTCCTTCCGTTTTAGTG 57.864 43.478 0.00 0.00 0.00 2.74
376 377 4.831155 TCTTCTCTCCTTCCGTTTTAGTGA 59.169 41.667 0.00 0.00 0.00 3.41
377 378 5.480772 TCTTCTCTCCTTCCGTTTTAGTGAT 59.519 40.000 0.00 0.00 0.00 3.06
378 379 5.740290 TCTCTCCTTCCGTTTTAGTGATT 57.260 39.130 0.00 0.00 0.00 2.57
379 380 6.845758 TCTCTCCTTCCGTTTTAGTGATTA 57.154 37.500 0.00 0.00 0.00 1.75
380 381 7.419711 TCTCTCCTTCCGTTTTAGTGATTAT 57.580 36.000 0.00 0.00 0.00 1.28
381 382 7.848128 TCTCTCCTTCCGTTTTAGTGATTATT 58.152 34.615 0.00 0.00 0.00 1.40
382 383 8.319146 TCTCTCCTTCCGTTTTAGTGATTATTT 58.681 33.333 0.00 0.00 0.00 1.40
383 384 8.488651 TCTCCTTCCGTTTTAGTGATTATTTC 57.511 34.615 0.00 0.00 0.00 2.17
384 385 8.098286 TCTCCTTCCGTTTTAGTGATTATTTCA 58.902 33.333 0.00 0.00 0.00 2.69
394 395 1.740585 TGATTATTTCACCAACCGCGG 59.259 47.619 26.86 26.86 0.00 6.46
395 396 1.064952 GATTATTTCACCAACCGCGGG 59.935 52.381 31.76 14.78 0.00 6.13
396 397 0.961358 TTATTTCACCAACCGCGGGG 60.961 55.000 31.76 24.22 40.11 5.73
397 398 1.839148 TATTTCACCAACCGCGGGGA 61.839 55.000 31.76 15.42 36.38 4.81
398 399 3.981609 TATTTCACCAACCGCGGGGAC 62.982 57.143 31.76 0.00 38.54 4.46
413 414 2.618053 GGGGACGTGTTCTACTCATTG 58.382 52.381 0.00 0.00 0.00 2.82
414 415 2.028385 GGGGACGTGTTCTACTCATTGT 60.028 50.000 0.00 0.00 0.00 2.71
415 416 3.251571 GGGACGTGTTCTACTCATTGTC 58.748 50.000 0.00 0.00 0.00 3.18
416 417 3.305813 GGGACGTGTTCTACTCATTGTCA 60.306 47.826 0.00 0.00 0.00 3.58
417 418 3.921021 GGACGTGTTCTACTCATTGTCAG 59.079 47.826 0.00 0.00 0.00 3.51
418 419 3.318017 ACGTGTTCTACTCATTGTCAGC 58.682 45.455 0.00 0.00 0.00 4.26
419 420 2.668457 CGTGTTCTACTCATTGTCAGCC 59.332 50.000 0.00 0.00 0.00 4.85
420 421 3.003480 GTGTTCTACTCATTGTCAGCCC 58.997 50.000 0.00 0.00 0.00 5.19
421 422 2.271800 GTTCTACTCATTGTCAGCCCG 58.728 52.381 0.00 0.00 0.00 6.13
422 423 0.175760 TCTACTCATTGTCAGCCCGC 59.824 55.000 0.00 0.00 0.00 6.13
423 424 0.108186 CTACTCATTGTCAGCCCGCA 60.108 55.000 0.00 0.00 0.00 5.69
424 425 0.323302 TACTCATTGTCAGCCCGCAA 59.677 50.000 0.00 0.00 0.00 4.85
425 426 1.237285 ACTCATTGTCAGCCCGCAAC 61.237 55.000 0.00 0.00 0.00 4.17
426 427 2.176546 CATTGTCAGCCCGCAACG 59.823 61.111 0.00 0.00 0.00 4.10
427 428 2.031919 ATTGTCAGCCCGCAACGA 59.968 55.556 0.00 0.00 0.00 3.85
428 429 2.034879 ATTGTCAGCCCGCAACGAG 61.035 57.895 0.00 0.00 0.00 4.18
431 432 4.742201 TCAGCCCGCAACGAGCTC 62.742 66.667 2.73 2.73 42.61 4.09
433 434 4.087892 AGCCCGCAACGAGCTCAT 62.088 61.111 15.40 0.00 42.61 2.90
434 435 3.567797 GCCCGCAACGAGCTCATC 61.568 66.667 15.40 0.00 42.61 2.92
435 436 2.892425 CCCGCAACGAGCTCATCC 60.892 66.667 15.40 0.00 42.61 3.51
436 437 2.185350 CCGCAACGAGCTCATCCT 59.815 61.111 15.40 0.00 42.61 3.24
437 438 1.880340 CCGCAACGAGCTCATCCTC 60.880 63.158 15.40 0.00 42.61 3.71
438 439 1.153765 CGCAACGAGCTCATCCTCA 60.154 57.895 15.40 0.00 42.61 3.86
439 440 0.529337 CGCAACGAGCTCATCCTCAT 60.529 55.000 15.40 0.00 42.61 2.90
440 441 1.269257 CGCAACGAGCTCATCCTCATA 60.269 52.381 15.40 0.00 42.61 2.15
441 442 2.402305 GCAACGAGCTCATCCTCATAG 58.598 52.381 15.40 0.00 41.15 2.23
442 443 2.865670 GCAACGAGCTCATCCTCATAGG 60.866 54.545 15.40 0.00 41.15 2.57
443 444 1.626686 ACGAGCTCATCCTCATAGGG 58.373 55.000 15.40 0.00 35.59 3.53
444 445 1.133325 ACGAGCTCATCCTCATAGGGT 60.133 52.381 15.40 0.00 35.59 4.34
446 447 2.324541 GAGCTCATCCTCATAGGGTGT 58.675 52.381 9.40 0.00 46.65 4.16
447 448 3.501349 GAGCTCATCCTCATAGGGTGTA 58.499 50.000 9.40 0.00 46.65 2.90
448 449 3.898123 GAGCTCATCCTCATAGGGTGTAA 59.102 47.826 9.40 0.00 46.65 2.41
449 450 3.643792 AGCTCATCCTCATAGGGTGTAAC 59.356 47.826 6.13 0.00 46.65 2.50
450 451 3.553096 GCTCATCCTCATAGGGTGTAACG 60.553 52.174 6.13 0.00 46.65 3.18
451 452 3.637229 CTCATCCTCATAGGGTGTAACGT 59.363 47.826 6.13 0.00 46.65 3.99
657 658 2.284112 CTGCCCAACCAAGCCCAT 60.284 61.111 0.00 0.00 0.00 4.00
663 664 1.747145 CAACCAAGCCCATGCAACA 59.253 52.632 0.00 0.00 41.13 3.33
1108 1110 5.049129 GCTATGGATATGTTTGTCTTGAGGC 60.049 44.000 0.00 0.00 0.00 4.70
1203 1205 4.037208 GCCATTGAGGAAAATCATGTCGAT 59.963 41.667 0.00 0.00 41.22 3.59
1500 1502 6.070938 GGAGGTGGTTAGTGTACTCTAAACAT 60.071 42.308 28.64 18.70 45.35 2.71
1541 1543 9.713740 CTGCTTTTGTTGCAAATTGTTTAAATA 57.286 25.926 0.00 0.00 40.13 1.40
1804 1806 6.490040 TCTTGCTAAACATAGTCTGGCTTTTT 59.510 34.615 0.00 0.00 0.00 1.94
2001 2003 6.869695 TGGTCGCACTGTTAAATATTCTCTA 58.130 36.000 0.00 0.00 0.00 2.43
2094 2096 8.777413 CAAGAACAAATGACTCTAATTGTGAGA 58.223 33.333 14.53 0.00 36.23 3.27
2281 2283 3.815809 TCGAACATGAAGGGAAAACACT 58.184 40.909 0.00 0.00 0.00 3.55
2409 2411 5.067954 GGTAAAGCTGTTACCTTCTTTGGA 58.932 41.667 21.17 0.00 40.87 3.53
2575 2577 4.200874 TCAAGCACCCGAGTTAAGAAAAA 58.799 39.130 0.00 0.00 0.00 1.94
2594 2596 9.750125 AAGAAAAACATTACTGGAATTGAAGAC 57.250 29.630 0.00 0.00 0.00 3.01
2625 2627 2.796383 CGATGACGCCAAGACTAAGAGG 60.796 54.545 0.00 0.00 0.00 3.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 2.290450 TGAACAGATCAATGCCAGAGCA 60.290 45.455 0.00 0.00 43.32 4.26
12 13 2.362736 TGAACAGATCAATGCCAGAGC 58.637 47.619 0.00 0.00 34.30 4.09
13 14 4.398358 ACAATGAACAGATCAATGCCAGAG 59.602 41.667 0.00 0.00 41.78 3.35
14 15 4.338012 ACAATGAACAGATCAATGCCAGA 58.662 39.130 0.00 0.00 41.78 3.86
15 16 4.713824 ACAATGAACAGATCAATGCCAG 57.286 40.909 0.00 0.00 41.78 4.85
16 17 5.007921 CGATACAATGAACAGATCAATGCCA 59.992 40.000 0.00 0.00 41.78 4.92
17 18 5.446709 CGATACAATGAACAGATCAATGCC 58.553 41.667 0.00 0.00 41.78 4.40
18 19 4.908156 GCGATACAATGAACAGATCAATGC 59.092 41.667 0.00 0.00 41.78 3.56
19 20 6.051646 TGCGATACAATGAACAGATCAATG 57.948 37.500 0.00 0.00 43.35 2.82
20 21 5.237996 CCTGCGATACAATGAACAGATCAAT 59.762 40.000 0.00 0.00 42.54 2.57
21 22 4.571984 CCTGCGATACAATGAACAGATCAA 59.428 41.667 0.00 0.00 42.54 2.57
22 23 4.122046 CCTGCGATACAATGAACAGATCA 58.878 43.478 0.00 0.00 43.67 2.92
23 24 4.210120 GTCCTGCGATACAATGAACAGATC 59.790 45.833 0.00 0.00 0.00 2.75
24 25 4.122776 GTCCTGCGATACAATGAACAGAT 58.877 43.478 0.00 0.00 0.00 2.90
25 26 3.056179 TGTCCTGCGATACAATGAACAGA 60.056 43.478 0.00 0.00 0.00 3.41
26 27 3.062639 GTGTCCTGCGATACAATGAACAG 59.937 47.826 0.00 0.00 30.84 3.16
27 28 3.000041 GTGTCCTGCGATACAATGAACA 59.000 45.455 0.00 0.00 30.84 3.18
28 29 3.000041 TGTGTCCTGCGATACAATGAAC 59.000 45.455 0.00 0.00 37.20 3.18
29 30 3.261580 CTGTGTCCTGCGATACAATGAA 58.738 45.455 0.00 0.00 39.34 2.57
30 31 2.892374 CTGTGTCCTGCGATACAATGA 58.108 47.619 0.00 0.00 39.34 2.57
31 32 1.328680 GCTGTGTCCTGCGATACAATG 59.671 52.381 0.00 0.00 39.34 2.82
32 33 1.066215 TGCTGTGTCCTGCGATACAAT 60.066 47.619 0.00 0.00 39.34 2.71
33 34 0.320050 TGCTGTGTCCTGCGATACAA 59.680 50.000 0.00 0.00 39.34 2.41
34 35 0.536724 ATGCTGTGTCCTGCGATACA 59.463 50.000 0.00 0.00 37.74 2.29
35 36 1.594862 GAATGCTGTGTCCTGCGATAC 59.405 52.381 0.00 0.00 38.28 2.24
36 37 1.206849 TGAATGCTGTGTCCTGCGATA 59.793 47.619 0.00 0.00 38.28 2.92
37 38 0.036105 TGAATGCTGTGTCCTGCGAT 60.036 50.000 0.00 0.00 38.28 4.58
38 39 0.036105 ATGAATGCTGTGTCCTGCGA 60.036 50.000 0.00 0.00 38.28 5.10
39 40 0.806868 AATGAATGCTGTGTCCTGCG 59.193 50.000 0.00 0.00 38.28 5.18
40 41 1.814394 TGAATGAATGCTGTGTCCTGC 59.186 47.619 0.00 0.00 36.19 4.85
41 42 3.079578 AGTGAATGAATGCTGTGTCCTG 58.920 45.455 0.00 0.00 0.00 3.86
42 43 3.430042 AGTGAATGAATGCTGTGTCCT 57.570 42.857 0.00 0.00 0.00 3.85
43 44 6.512415 GCTTATAGTGAATGAATGCTGTGTCC 60.512 42.308 0.00 0.00 0.00 4.02
44 45 6.259608 AGCTTATAGTGAATGAATGCTGTGTC 59.740 38.462 0.00 0.00 0.00 3.67
45 46 6.118170 AGCTTATAGTGAATGAATGCTGTGT 58.882 36.000 0.00 0.00 0.00 3.72
46 47 6.615264 AGCTTATAGTGAATGAATGCTGTG 57.385 37.500 0.00 0.00 0.00 3.66
47 48 6.426328 GCTAGCTTATAGTGAATGAATGCTGT 59.574 38.462 7.70 0.00 0.00 4.40
48 49 6.649973 AGCTAGCTTATAGTGAATGAATGCTG 59.350 38.462 12.68 0.00 0.00 4.41
49 50 6.649973 CAGCTAGCTTATAGTGAATGAATGCT 59.350 38.462 16.46 0.00 0.00 3.79
50 51 6.620303 GCAGCTAGCTTATAGTGAATGAATGC 60.620 42.308 16.46 6.60 41.15 3.56
51 52 6.426025 TGCAGCTAGCTTATAGTGAATGAATG 59.574 38.462 16.46 0.00 45.94 2.67
52 53 6.426328 GTGCAGCTAGCTTATAGTGAATGAAT 59.574 38.462 16.46 0.00 45.94 2.57
53 54 5.755375 GTGCAGCTAGCTTATAGTGAATGAA 59.245 40.000 16.46 0.00 45.94 2.57
54 55 5.069648 AGTGCAGCTAGCTTATAGTGAATGA 59.930 40.000 16.46 0.00 45.94 2.57
55 56 5.295950 AGTGCAGCTAGCTTATAGTGAATG 58.704 41.667 16.46 1.31 45.94 2.67
56 57 5.543507 AGTGCAGCTAGCTTATAGTGAAT 57.456 39.130 16.46 0.00 45.94 2.57
57 58 5.344743 AAGTGCAGCTAGCTTATAGTGAA 57.655 39.130 16.46 0.00 45.94 3.18
58 59 5.508153 GCTAAGTGCAGCTAGCTTATAGTGA 60.508 44.000 16.46 0.00 45.94 3.41
59 60 4.683781 GCTAAGTGCAGCTAGCTTATAGTG 59.316 45.833 16.46 4.59 45.94 2.74
60 61 4.877282 GCTAAGTGCAGCTAGCTTATAGT 58.123 43.478 16.46 4.31 45.94 2.12
82 83 6.293081 GCGCCAAGGTTAGCATCATATATATG 60.293 42.308 15.47 15.47 35.04 1.78
83 84 5.760253 GCGCCAAGGTTAGCATCATATATAT 59.240 40.000 0.00 0.00 0.00 0.86
84 85 5.116180 GCGCCAAGGTTAGCATCATATATA 58.884 41.667 0.00 0.00 0.00 0.86
85 86 3.941483 GCGCCAAGGTTAGCATCATATAT 59.059 43.478 0.00 0.00 0.00 0.86
86 87 3.334691 GCGCCAAGGTTAGCATCATATA 58.665 45.455 0.00 0.00 0.00 0.86
87 88 2.154462 GCGCCAAGGTTAGCATCATAT 58.846 47.619 0.00 0.00 0.00 1.78
88 89 1.593196 GCGCCAAGGTTAGCATCATA 58.407 50.000 0.00 0.00 0.00 2.15
89 90 1.103398 GGCGCCAAGGTTAGCATCAT 61.103 55.000 24.80 0.00 0.00 2.45
90 91 1.748879 GGCGCCAAGGTTAGCATCA 60.749 57.895 24.80 0.00 0.00 3.07
91 92 2.481471 GGGCGCCAAGGTTAGCATC 61.481 63.158 30.85 1.22 0.00 3.91
92 93 2.440247 GGGCGCCAAGGTTAGCAT 60.440 61.111 30.85 0.00 0.00 3.79
93 94 3.499461 TTGGGCGCCAAGGTTAGCA 62.499 57.895 30.85 11.59 38.75 3.49
94 95 2.675075 TTGGGCGCCAAGGTTAGC 60.675 61.111 30.85 8.62 38.75 3.09
109 110 0.107017 AGTCCGGCATCCCAATCTTG 60.107 55.000 0.00 0.00 0.00 3.02
110 111 0.107017 CAGTCCGGCATCCCAATCTT 60.107 55.000 0.00 0.00 0.00 2.40
111 112 1.528824 CAGTCCGGCATCCCAATCT 59.471 57.895 0.00 0.00 0.00 2.40
112 113 2.189499 GCAGTCCGGCATCCCAATC 61.189 63.158 0.00 0.00 0.00 2.67
113 114 2.124151 GCAGTCCGGCATCCCAAT 60.124 61.111 0.00 0.00 0.00 3.16
114 115 4.776322 CGCAGTCCGGCATCCCAA 62.776 66.667 0.00 0.00 0.00 4.12
121 122 3.414700 CTTGTGTCGCAGTCCGGC 61.415 66.667 0.00 0.00 43.18 6.13
122 123 3.414700 GCTTGTGTCGCAGTCCGG 61.415 66.667 0.00 0.00 37.59 5.14
123 124 2.356313 AGCTTGTGTCGCAGTCCG 60.356 61.111 0.00 0.00 38.61 4.79
124 125 2.959357 GCAGCTTGTGTCGCAGTCC 61.959 63.158 0.00 0.00 0.00 3.85
125 126 2.553268 GCAGCTTGTGTCGCAGTC 59.447 61.111 0.00 0.00 0.00 3.51
126 127 3.341043 CGCAGCTTGTGTCGCAGT 61.341 61.111 0.00 0.00 0.00 4.40
127 128 4.081030 CCGCAGCTTGTGTCGCAG 62.081 66.667 0.00 0.00 0.00 5.18
130 131 3.648982 TTGCCGCAGCTTGTGTCG 61.649 61.111 0.00 0.00 40.80 4.35
131 132 2.050985 GTTGCCGCAGCTTGTGTC 60.051 61.111 0.00 0.00 40.80 3.67
132 133 3.952675 CGTTGCCGCAGCTTGTGT 61.953 61.111 5.63 0.00 40.80 3.72
133 134 2.111932 TTACGTTGCCGCAGCTTGTG 62.112 55.000 5.63 0.00 40.80 3.33
134 135 1.841663 CTTACGTTGCCGCAGCTTGT 61.842 55.000 5.63 0.00 40.80 3.16
135 136 1.154413 CTTACGTTGCCGCAGCTTG 60.154 57.895 5.63 0.00 40.80 4.01
136 137 1.597027 ACTTACGTTGCCGCAGCTT 60.597 52.632 5.63 0.00 40.80 3.74
137 138 2.030562 ACTTACGTTGCCGCAGCT 59.969 55.556 5.63 0.00 40.80 4.24
138 139 2.173382 CACTTACGTTGCCGCAGC 59.827 61.111 0.00 0.00 37.70 5.25
139 140 1.204062 CACACTTACGTTGCCGCAG 59.796 57.895 0.00 0.00 37.70 5.18
140 141 2.887889 GCACACTTACGTTGCCGCA 61.888 57.895 0.00 0.00 37.70 5.69
141 142 2.127383 GCACACTTACGTTGCCGC 60.127 61.111 0.00 0.00 37.70 6.53
142 143 2.554272 GGCACACTTACGTTGCCG 59.446 61.111 12.15 0.00 35.86 5.69
143 144 0.945265 TACGGCACACTTACGTTGCC 60.945 55.000 16.58 16.58 41.53 4.52
144 145 0.162294 GTACGGCACACTTACGTTGC 59.838 55.000 0.00 0.00 41.53 4.17
145 146 0.785979 GGTACGGCACACTTACGTTG 59.214 55.000 0.00 0.00 41.53 4.10
146 147 0.319813 GGGTACGGCACACTTACGTT 60.320 55.000 0.00 0.00 41.53 3.99
147 148 1.290009 GGGTACGGCACACTTACGT 59.710 57.895 0.00 0.00 43.88 3.57
148 149 1.446618 GGGGTACGGCACACTTACG 60.447 63.158 0.00 0.00 0.00 3.18
149 150 0.322648 AAGGGGTACGGCACACTTAC 59.677 55.000 0.00 0.00 0.00 2.34
150 151 0.322322 CAAGGGGTACGGCACACTTA 59.678 55.000 0.00 0.00 0.00 2.24
151 152 1.072505 CAAGGGGTACGGCACACTT 59.927 57.895 0.00 0.00 0.00 3.16
152 153 2.747686 CAAGGGGTACGGCACACT 59.252 61.111 0.00 0.00 0.00 3.55
153 154 2.359478 CCAAGGGGTACGGCACAC 60.359 66.667 0.00 0.00 0.00 3.82
154 155 3.642503 CCCAAGGGGTACGGCACA 61.643 66.667 0.00 0.00 38.25 4.57
158 159 3.335729 AAGGCCCAAGGGGTACGG 61.336 66.667 7.36 0.00 46.51 4.02
159 160 2.045340 CAAGGCCCAAGGGGTACG 60.045 66.667 7.36 0.00 46.51 3.67
160 161 2.359011 CCAAGGCCCAAGGGGTAC 59.641 66.667 7.36 0.00 46.51 3.34
161 162 2.944390 CCCAAGGCCCAAGGGGTA 60.944 66.667 15.40 0.00 46.51 3.69
187 188 4.101448 AAGCCTGGCCGGTAGCAG 62.101 66.667 16.57 0.00 46.50 4.24
188 189 4.096003 GAAGCCTGGCCGGTAGCA 62.096 66.667 16.57 0.00 46.50 3.49
189 190 3.622060 TTGAAGCCTGGCCGGTAGC 62.622 63.158 16.57 7.85 42.60 3.58
190 191 1.745489 GTTGAAGCCTGGCCGGTAG 60.745 63.158 16.57 1.56 34.25 3.18
191 192 2.349755 GTTGAAGCCTGGCCGGTA 59.650 61.111 16.57 0.00 34.25 4.02
192 193 4.660938 GGTTGAAGCCTGGCCGGT 62.661 66.667 16.57 0.00 34.25 5.28
193 194 4.351054 AGGTTGAAGCCTGGCCGG 62.351 66.667 16.57 3.88 37.50 6.13
194 195 2.747855 GAGGTTGAAGCCTGGCCG 60.748 66.667 16.57 0.00 39.34 6.13
195 196 1.973812 GTGAGGTTGAAGCCTGGCC 60.974 63.158 16.57 0.00 39.34 5.36
196 197 1.973812 GGTGAGGTTGAAGCCTGGC 60.974 63.158 11.65 11.65 39.34 4.85
197 198 0.607489 CAGGTGAGGTTGAAGCCTGG 60.607 60.000 0.00 0.00 42.05 4.45
198 199 1.239968 GCAGGTGAGGTTGAAGCCTG 61.240 60.000 4.67 4.67 46.82 4.85
199 200 1.073897 GCAGGTGAGGTTGAAGCCT 59.926 57.895 0.00 0.00 42.53 4.58
200 201 2.328099 CGCAGGTGAGGTTGAAGCC 61.328 63.158 0.00 0.00 0.00 4.35
201 202 0.674895 ATCGCAGGTGAGGTTGAAGC 60.675 55.000 0.00 0.00 0.00 3.86
202 203 1.363744 GATCGCAGGTGAGGTTGAAG 58.636 55.000 0.00 0.00 0.00 3.02
203 204 0.389817 CGATCGCAGGTGAGGTTGAA 60.390 55.000 0.26 0.00 0.00 2.69
204 205 1.215382 CGATCGCAGGTGAGGTTGA 59.785 57.895 0.26 0.00 0.00 3.18
205 206 1.078759 GTCGATCGCAGGTGAGGTTG 61.079 60.000 11.09 0.00 0.00 3.77
206 207 1.215647 GTCGATCGCAGGTGAGGTT 59.784 57.895 11.09 0.00 0.00 3.50
207 208 0.393944 TAGTCGATCGCAGGTGAGGT 60.394 55.000 11.09 0.00 0.00 3.85
208 209 0.029567 GTAGTCGATCGCAGGTGAGG 59.970 60.000 11.09 0.00 0.00 3.86
209 210 0.316278 CGTAGTCGATCGCAGGTGAG 60.316 60.000 11.09 0.00 39.71 3.51
210 211 1.712018 CCGTAGTCGATCGCAGGTGA 61.712 60.000 11.09 0.00 39.71 4.02
211 212 1.298413 CCGTAGTCGATCGCAGGTG 60.298 63.158 11.09 0.00 39.71 4.00
212 213 3.108343 CCGTAGTCGATCGCAGGT 58.892 61.111 11.09 0.00 39.71 4.00
213 214 2.353607 GCCGTAGTCGATCGCAGG 60.354 66.667 11.09 9.70 39.71 4.85
214 215 1.939785 GTGCCGTAGTCGATCGCAG 60.940 63.158 11.09 0.00 39.71 5.18
215 216 2.101575 GTGCCGTAGTCGATCGCA 59.898 61.111 11.09 0.00 39.71 5.10
216 217 3.017314 CGTGCCGTAGTCGATCGC 61.017 66.667 11.09 5.80 39.71 4.58
217 218 2.352001 CCGTGCCGTAGTCGATCG 60.352 66.667 9.36 9.36 39.71 3.69
218 219 2.654404 GCCGTGCCGTAGTCGATC 60.654 66.667 0.00 0.00 39.71 3.69
219 220 3.445687 TGCCGTGCCGTAGTCGAT 61.446 61.111 0.00 0.00 39.71 3.59
220 221 4.409218 GTGCCGTGCCGTAGTCGA 62.409 66.667 0.00 0.00 39.71 4.20
235 236 2.962827 CTGTCAAGCAGCAGCCGTG 61.963 63.158 0.00 0.00 43.56 4.94
236 237 2.667536 CTGTCAAGCAGCAGCCGT 60.668 61.111 0.00 0.00 43.56 5.68
254 255 3.920093 GACTTGGAAGGCCCCGTGG 62.920 68.421 0.00 0.00 0.00 4.94
255 256 2.359975 GACTTGGAAGGCCCCGTG 60.360 66.667 0.00 0.00 0.00 4.94
261 262 0.250513 ATGTCGAGGACTTGGAAGGC 59.749 55.000 0.00 0.00 33.15 4.35
262 263 1.827969 AGATGTCGAGGACTTGGAAGG 59.172 52.381 0.00 0.00 33.15 3.46
263 264 2.159170 GGAGATGTCGAGGACTTGGAAG 60.159 54.545 0.00 0.00 33.15 3.46
264 265 1.825474 GGAGATGTCGAGGACTTGGAA 59.175 52.381 0.00 0.00 33.15 3.53
265 266 1.475403 GGAGATGTCGAGGACTTGGA 58.525 55.000 0.00 0.00 33.15 3.53
266 267 0.461961 GGGAGATGTCGAGGACTTGG 59.538 60.000 0.00 0.00 33.15 3.61
267 268 1.407258 GAGGGAGATGTCGAGGACTTG 59.593 57.143 0.00 0.00 33.15 3.16
268 269 1.686741 GGAGGGAGATGTCGAGGACTT 60.687 57.143 0.00 0.00 33.15 3.01
269 270 0.106419 GGAGGGAGATGTCGAGGACT 60.106 60.000 0.00 0.00 33.15 3.85
270 271 0.395862 TGGAGGGAGATGTCGAGGAC 60.396 60.000 0.00 0.00 0.00 3.85
271 272 0.106469 CTGGAGGGAGATGTCGAGGA 60.106 60.000 0.00 0.00 0.00 3.71
272 273 1.112315 CCTGGAGGGAGATGTCGAGG 61.112 65.000 0.00 0.00 37.23 4.63
273 274 0.106469 TCCTGGAGGGAGATGTCGAG 60.106 60.000 0.00 0.00 39.58 4.04
274 275 0.395862 GTCCTGGAGGGAGATGTCGA 60.396 60.000 0.00 0.00 46.10 4.20
275 276 0.684479 TGTCCTGGAGGGAGATGTCG 60.684 60.000 0.00 0.00 46.10 4.35
276 277 0.827368 GTGTCCTGGAGGGAGATGTC 59.173 60.000 0.00 0.00 46.10 3.06
277 278 0.618968 GGTGTCCTGGAGGGAGATGT 60.619 60.000 0.00 0.00 46.10 3.06
278 279 0.618680 TGGTGTCCTGGAGGGAGATG 60.619 60.000 0.00 0.00 46.10 2.90
279 280 0.618968 GTGGTGTCCTGGAGGGAGAT 60.619 60.000 0.00 0.00 46.10 2.75
280 281 1.229209 GTGGTGTCCTGGAGGGAGA 60.229 63.158 0.00 0.00 46.10 3.71
281 282 1.536418 TGTGGTGTCCTGGAGGGAG 60.536 63.158 0.00 0.00 46.10 4.30
282 283 1.841556 GTGTGGTGTCCTGGAGGGA 60.842 63.158 0.00 0.00 42.77 4.20
283 284 1.843376 AGTGTGGTGTCCTGGAGGG 60.843 63.158 0.00 0.00 35.41 4.30
284 285 1.372683 CAGTGTGGTGTCCTGGAGG 59.627 63.158 0.00 0.00 0.00 4.30
285 286 1.302033 GCAGTGTGGTGTCCTGGAG 60.302 63.158 0.00 0.00 0.00 3.86
286 287 2.828868 GCAGTGTGGTGTCCTGGA 59.171 61.111 0.00 0.00 0.00 3.86
287 288 2.666190 CGCAGTGTGGTGTCCTGG 60.666 66.667 0.00 0.00 0.00 4.45
288 289 3.349006 GCGCAGTGTGGTGTCCTG 61.349 66.667 0.30 0.00 0.00 3.86
289 290 4.969196 CGCGCAGTGTGGTGTCCT 62.969 66.667 8.75 0.00 0.00 3.85
299 300 2.432628 GAGCTGGTTACGCGCAGT 60.433 61.111 5.73 9.29 0.00 4.40
300 301 3.188786 GGAGCTGGTTACGCGCAG 61.189 66.667 5.73 6.55 0.00 5.18
303 304 1.952266 GAAACGGAGCTGGTTACGCG 61.952 60.000 3.53 3.53 0.00 6.01
304 305 0.669625 AGAAACGGAGCTGGTTACGC 60.670 55.000 0.00 0.00 0.00 4.42
305 306 1.068474 CAGAAACGGAGCTGGTTACG 58.932 55.000 0.00 3.88 0.00 3.18
306 307 2.067013 GACAGAAACGGAGCTGGTTAC 58.933 52.381 0.00 0.00 36.47 2.50
307 308 1.689813 TGACAGAAACGGAGCTGGTTA 59.310 47.619 0.00 0.00 36.47 2.85
308 309 0.468226 TGACAGAAACGGAGCTGGTT 59.532 50.000 0.00 0.00 36.47 3.67
309 310 0.687354 ATGACAGAAACGGAGCTGGT 59.313 50.000 0.00 0.00 36.47 4.00
310 311 1.363744 GATGACAGAAACGGAGCTGG 58.636 55.000 0.00 0.00 36.47 4.85
311 312 1.338105 TGGATGACAGAAACGGAGCTG 60.338 52.381 0.00 0.00 38.10 4.24
312 313 0.976641 TGGATGACAGAAACGGAGCT 59.023 50.000 0.00 0.00 0.00 4.09
313 314 1.464997 GTTGGATGACAGAAACGGAGC 59.535 52.381 0.00 0.00 0.00 4.70
314 315 2.996621 GAGTTGGATGACAGAAACGGAG 59.003 50.000 0.00 0.00 0.00 4.63
315 316 2.289444 GGAGTTGGATGACAGAAACGGA 60.289 50.000 0.00 0.00 0.00 4.69
316 317 2.076863 GGAGTTGGATGACAGAAACGG 58.923 52.381 0.00 0.00 0.00 4.44
317 318 2.766313 TGGAGTTGGATGACAGAAACG 58.234 47.619 0.00 0.00 0.00 3.60
318 319 3.057946 GCTTGGAGTTGGATGACAGAAAC 60.058 47.826 0.00 0.00 0.00 2.78
319 320 3.149196 GCTTGGAGTTGGATGACAGAAA 58.851 45.455 0.00 0.00 0.00 2.52
320 321 2.553028 GGCTTGGAGTTGGATGACAGAA 60.553 50.000 0.00 0.00 0.00 3.02
321 322 1.003580 GGCTTGGAGTTGGATGACAGA 59.996 52.381 0.00 0.00 0.00 3.41
322 323 1.271543 TGGCTTGGAGTTGGATGACAG 60.272 52.381 0.00 0.00 0.00 3.51
323 324 0.770499 TGGCTTGGAGTTGGATGACA 59.230 50.000 0.00 0.00 0.00 3.58
324 325 1.168714 GTGGCTTGGAGTTGGATGAC 58.831 55.000 0.00 0.00 0.00 3.06
325 326 0.038166 GGTGGCTTGGAGTTGGATGA 59.962 55.000 0.00 0.00 0.00 2.92
326 327 0.038744 AGGTGGCTTGGAGTTGGATG 59.961 55.000 0.00 0.00 0.00 3.51
327 328 0.329596 GAGGTGGCTTGGAGTTGGAT 59.670 55.000 0.00 0.00 0.00 3.41
328 329 1.761174 GAGGTGGCTTGGAGTTGGA 59.239 57.895 0.00 0.00 0.00 3.53
329 330 1.303643 GGAGGTGGCTTGGAGTTGG 60.304 63.158 0.00 0.00 0.00 3.77
330 331 0.607489 CTGGAGGTGGCTTGGAGTTG 60.607 60.000 0.00 0.00 0.00 3.16
331 332 0.768221 TCTGGAGGTGGCTTGGAGTT 60.768 55.000 0.00 0.00 0.00 3.01
332 333 1.152030 TCTGGAGGTGGCTTGGAGT 60.152 57.895 0.00 0.00 0.00 3.85
333 334 0.906756 TCTCTGGAGGTGGCTTGGAG 60.907 60.000 0.00 0.00 0.00 3.86
334 335 0.252881 ATCTCTGGAGGTGGCTTGGA 60.253 55.000 0.00 0.00 0.00 3.53
335 336 0.179936 GATCTCTGGAGGTGGCTTGG 59.820 60.000 0.00 0.00 0.00 3.61
336 337 1.202330 AGATCTCTGGAGGTGGCTTG 58.798 55.000 0.00 0.00 0.00 4.01
337 338 1.836802 GAAGATCTCTGGAGGTGGCTT 59.163 52.381 0.00 0.00 0.00 4.35
338 339 1.008206 AGAAGATCTCTGGAGGTGGCT 59.992 52.381 0.00 0.00 31.12 4.75
339 340 1.412343 GAGAAGATCTCTGGAGGTGGC 59.588 57.143 0.00 0.00 40.30 5.01
350 351 5.717654 ACTAAAACGGAAGGAGAGAAGATCT 59.282 40.000 0.00 0.00 42.61 2.75
351 352 5.808030 CACTAAAACGGAAGGAGAGAAGATC 59.192 44.000 0.00 0.00 0.00 2.75
352 353 5.480772 TCACTAAAACGGAAGGAGAGAAGAT 59.519 40.000 0.00 0.00 0.00 2.40
353 354 4.831155 TCACTAAAACGGAAGGAGAGAAGA 59.169 41.667 0.00 0.00 0.00 2.87
354 355 5.135508 TCACTAAAACGGAAGGAGAGAAG 57.864 43.478 0.00 0.00 0.00 2.85
355 356 5.740290 ATCACTAAAACGGAAGGAGAGAA 57.260 39.130 0.00 0.00 0.00 2.87
356 357 5.740290 AATCACTAAAACGGAAGGAGAGA 57.260 39.130 0.00 0.00 0.00 3.10
357 358 8.494016 AAATAATCACTAAAACGGAAGGAGAG 57.506 34.615 0.00 0.00 0.00 3.20
358 359 8.098286 TGAAATAATCACTAAAACGGAAGGAGA 58.902 33.333 0.00 0.00 31.50 3.71
359 360 8.263940 TGAAATAATCACTAAAACGGAAGGAG 57.736 34.615 0.00 0.00 31.50 3.69
374 375 1.740585 CCGCGGTTGGTGAAATAATCA 59.259 47.619 19.50 0.00 35.05 2.57
375 376 1.064952 CCCGCGGTTGGTGAAATAATC 59.935 52.381 26.12 0.00 0.00 1.75
376 377 1.099689 CCCGCGGTTGGTGAAATAAT 58.900 50.000 26.12 0.00 0.00 1.28
377 378 0.961358 CCCCGCGGTTGGTGAAATAA 60.961 55.000 26.12 0.00 0.00 1.40
378 379 1.377463 CCCCGCGGTTGGTGAAATA 60.377 57.895 26.12 0.00 0.00 1.40
379 380 2.675075 CCCCGCGGTTGGTGAAAT 60.675 61.111 26.12 0.00 0.00 2.17
380 381 3.875023 TCCCCGCGGTTGGTGAAA 61.875 61.111 26.12 0.00 0.00 2.69
381 382 4.629523 GTCCCCGCGGTTGGTGAA 62.630 66.667 26.12 0.00 0.00 3.18
387 388 4.974989 GAACACGTCCCCGCGGTT 62.975 66.667 26.12 9.82 37.53 4.44
389 390 3.751246 TAGAACACGTCCCCGCGG 61.751 66.667 21.04 21.04 37.70 6.46
390 391 2.505557 GTAGAACACGTCCCCGCG 60.506 66.667 0.00 0.00 37.70 6.46
391 392 1.153881 GAGTAGAACACGTCCCCGC 60.154 63.158 0.00 0.00 37.70 6.13
392 393 0.815734 ATGAGTAGAACACGTCCCCG 59.184 55.000 0.00 0.00 40.83 5.73
393 394 2.028385 ACAATGAGTAGAACACGTCCCC 60.028 50.000 0.00 0.00 0.00 4.81
394 395 3.251571 GACAATGAGTAGAACACGTCCC 58.748 50.000 0.00 0.00 0.00 4.46
395 396 3.909430 TGACAATGAGTAGAACACGTCC 58.091 45.455 0.00 0.00 0.00 4.79
396 397 3.365220 GCTGACAATGAGTAGAACACGTC 59.635 47.826 0.00 0.00 0.00 4.34
397 398 3.318017 GCTGACAATGAGTAGAACACGT 58.682 45.455 0.00 0.00 0.00 4.49
398 399 2.668457 GGCTGACAATGAGTAGAACACG 59.332 50.000 0.00 0.00 0.00 4.49
399 400 3.003480 GGGCTGACAATGAGTAGAACAC 58.997 50.000 0.00 0.00 0.00 3.32
400 401 2.353704 CGGGCTGACAATGAGTAGAACA 60.354 50.000 0.00 0.00 0.00 3.18
401 402 2.271800 CGGGCTGACAATGAGTAGAAC 58.728 52.381 0.00 0.00 0.00 3.01
402 403 1.405526 GCGGGCTGACAATGAGTAGAA 60.406 52.381 0.00 0.00 0.00 2.10
403 404 0.175760 GCGGGCTGACAATGAGTAGA 59.824 55.000 0.00 0.00 0.00 2.59
404 405 0.108186 TGCGGGCTGACAATGAGTAG 60.108 55.000 0.00 0.00 0.00 2.57
405 406 0.323302 TTGCGGGCTGACAATGAGTA 59.677 50.000 0.00 0.00 0.00 2.59
406 407 1.073025 TTGCGGGCTGACAATGAGT 59.927 52.632 0.00 0.00 0.00 3.41
407 408 1.503542 GTTGCGGGCTGACAATGAG 59.496 57.895 0.00 0.00 0.00 2.90
408 409 2.324330 CGTTGCGGGCTGACAATGA 61.324 57.895 13.88 0.00 35.27 2.57
409 410 2.176546 CGTTGCGGGCTGACAATG 59.823 61.111 0.00 2.93 0.00 2.82
410 411 2.031919 TCGTTGCGGGCTGACAAT 59.968 55.556 0.00 0.00 0.00 2.71
411 412 2.664851 CTCGTTGCGGGCTGACAA 60.665 61.111 0.00 0.00 0.00 3.18
421 422 2.402305 CTATGAGGATGAGCTCGTTGC 58.598 52.381 10.42 4.84 43.29 4.17
422 423 2.288702 CCCTATGAGGATGAGCTCGTTG 60.289 54.545 10.42 0.00 37.67 4.10
423 424 1.967066 CCCTATGAGGATGAGCTCGTT 59.033 52.381 10.42 0.00 37.67 3.85
424 425 1.133325 ACCCTATGAGGATGAGCTCGT 60.133 52.381 8.55 8.55 37.67 4.18
425 426 1.271934 CACCCTATGAGGATGAGCTCG 59.728 57.143 9.64 0.00 37.67 5.03
426 427 2.324541 ACACCCTATGAGGATGAGCTC 58.675 52.381 6.82 6.82 37.67 4.09
427 428 2.485966 ACACCCTATGAGGATGAGCT 57.514 50.000 0.00 0.00 37.67 4.09
428 429 3.553096 CGTTACACCCTATGAGGATGAGC 60.553 52.174 0.00 0.00 37.67 4.26
429 430 3.637229 ACGTTACACCCTATGAGGATGAG 59.363 47.826 0.00 0.00 37.67 2.90
430 431 3.635373 GACGTTACACCCTATGAGGATGA 59.365 47.826 0.00 0.00 37.67 2.92
431 432 3.243771 GGACGTTACACCCTATGAGGATG 60.244 52.174 0.00 0.00 37.67 3.51
432 433 2.963782 GGACGTTACACCCTATGAGGAT 59.036 50.000 0.00 0.00 37.67 3.24
433 434 2.381911 GGACGTTACACCCTATGAGGA 58.618 52.381 0.00 0.00 37.67 3.71
434 435 1.411612 GGGACGTTACACCCTATGAGG 59.588 57.143 2.80 0.00 42.56 3.86
435 436 2.100916 CTGGGACGTTACACCCTATGAG 59.899 54.545 11.08 0.00 45.74 2.90
436 437 2.104967 CTGGGACGTTACACCCTATGA 58.895 52.381 11.08 0.00 45.74 2.15
437 438 1.138266 CCTGGGACGTTACACCCTATG 59.862 57.143 11.08 2.49 45.74 2.23
438 439 1.492764 CCTGGGACGTTACACCCTAT 58.507 55.000 11.08 0.00 45.74 2.57
439 440 0.615544 CCCTGGGACGTTACACCCTA 60.616 60.000 7.01 0.00 45.74 3.53
440 441 1.916777 CCCTGGGACGTTACACCCT 60.917 63.158 7.01 0.00 45.74 4.34
441 442 2.666812 CCCTGGGACGTTACACCC 59.333 66.667 7.01 3.07 45.74 4.61
442 443 2.046604 GCCCTGGGACGTTACACC 60.047 66.667 19.27 0.00 0.00 4.16
443 444 2.046604 GGCCCTGGGACGTTACAC 60.047 66.667 19.27 0.00 0.00 2.90
497 498 1.506907 GGCCCCCTTTTAGTCTGGGT 61.507 60.000 0.00 0.00 39.31 4.51
1108 1110 2.161855 TGAATTTGTAGCAGCACCAGG 58.838 47.619 0.00 0.00 0.00 4.45
1203 1205 7.254387 GCATCATTTTCCGCAGCATTATTTTTA 60.254 33.333 0.00 0.00 0.00 1.52
1500 1502 7.801716 ACAAAAGCAGTAGACTTTATTCACA 57.198 32.000 0.00 0.00 36.35 3.58
2001 2003 7.300658 ACCTTGCATCCTTAATTATCCTCAAT 58.699 34.615 0.00 0.00 0.00 2.57
2094 2096 6.395629 AGTAGTACTTGACATGTTTACGCAT 58.604 36.000 0.00 0.00 0.00 4.73
2219 2221 3.930229 TCCACGAACATCTTTAACATCCG 59.070 43.478 0.00 0.00 0.00 4.18
2281 2283 2.921834 AGTCTGCTCTGTACCCCTTA 57.078 50.000 0.00 0.00 0.00 2.69
2575 2577 7.823745 AAGTTGTCTTCAATTCCAGTAATGT 57.176 32.000 0.00 0.00 35.92 2.71
2594 2596 1.278238 GGCGTCATCGGTAGAAGTTG 58.722 55.000 0.00 0.00 37.56 3.16
2625 2627 2.732282 GCTAGCCAAAGATTTTGCGTCC 60.732 50.000 2.29 0.00 34.37 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.