Multiple sequence alignment - TraesCS7A01G568300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G568300 chr7A 100.000 4286 0 0 1 4286 736341213 736345498 0.000000e+00 7915.0
1 TraesCS7A01G568300 chr7A 77.973 740 137 15 2742 3462 736259137 736259869 1.410000e-119 440.0
2 TraesCS7A01G568300 chr7A 84.320 338 37 9 3179 3507 735814119 735814449 2.490000e-82 316.0
3 TraesCS7A01G568300 chr7A 84.328 268 33 6 3533 3799 735814724 735814983 1.980000e-63 254.0
4 TraesCS7A01G568300 chr7A 88.172 93 9 2 4103 4195 736319448 736319538 4.530000e-20 110.0
5 TraesCS7A01G568300 chr7A 87.640 89 7 2 3809 3893 735624557 735624645 2.730000e-17 100.0
6 TraesCS7A01G568300 chr7B 83.294 3406 499 33 4 3361 744260303 744256920 0.000000e+00 3073.0
7 TraesCS7A01G568300 chr7B 82.102 3520 541 42 4 3462 743738703 743742194 0.000000e+00 2928.0
8 TraesCS7A01G568300 chr7B 83.538 2691 393 36 747 3403 743816242 743818916 0.000000e+00 2470.0
9 TraesCS7A01G568300 chr7B 77.778 3285 570 103 279 3465 746528366 746525144 0.000000e+00 1875.0
10 TraesCS7A01G568300 chr7B 85.408 1727 218 20 747 2454 744109325 744107614 0.000000e+00 1762.0
11 TraesCS7A01G568300 chr7B 80.741 2295 369 35 502 2749 746738699 746740967 0.000000e+00 1722.0
12 TraesCS7A01G568300 chr7B 89.706 748 74 2 6 753 743815475 743816219 0.000000e+00 952.0
13 TraesCS7A01G568300 chr7B 89.101 734 74 6 14 746 744348053 744348781 0.000000e+00 907.0
14 TraesCS7A01G568300 chr7B 88.306 744 81 4 4 746 744110093 744109355 0.000000e+00 887.0
15 TraesCS7A01G568300 chr7B 81.855 981 164 9 2493 3462 744107617 744106640 0.000000e+00 813.0
16 TraesCS7A01G568300 chr7B 77.846 1133 197 38 2209 3307 744312251 744313363 0.000000e+00 652.0
17 TraesCS7A01G568300 chr7B 85.593 236 23 7 4059 4286 743702538 743702306 1.990000e-58 237.0
18 TraesCS7A01G568300 chr7B 85.593 236 23 7 4059 4286 744104941 744104709 1.990000e-58 237.0
19 TraesCS7A01G568300 chr7B 82.796 93 4 6 4114 4195 744284032 744284123 5.940000e-09 73.1
20 TraesCS7A01G568300 chr7B 97.436 39 1 0 4115 4153 743991675 743991713 2.770000e-07 67.6
21 TraesCS7A01G568300 chr5B 94.053 1177 58 4 1520 2685 604164978 604166153 0.000000e+00 1775.0
22 TraesCS7A01G568300 chr3D 74.679 1868 426 34 1477 3314 428247484 428249334 0.000000e+00 785.0
23 TraesCS7A01G568300 chr3D 73.896 1812 441 24 1477 3266 428253438 428255239 0.000000e+00 697.0
24 TraesCS7A01G568300 chr3D 75.913 739 157 19 19 748 428251922 428252648 4.070000e-95 359.0
25 TraesCS7A01G568300 chr4A 72.724 2559 616 66 749 3266 735021587 735024104 0.000000e+00 784.0
26 TraesCS7A01G568300 chr4A 72.127 2576 607 79 747 3266 736121025 736123545 0.000000e+00 676.0
27 TraesCS7A01G568300 chr4A 72.042 2586 616 71 747 3266 736148581 736151125 0.000000e+00 671.0
28 TraesCS7A01G568300 chr4A 72.527 1820 443 43 1477 3266 736886029 736887821 4.880000e-149 538.0
29 TraesCS7A01G568300 chr4A 76.596 705 145 17 4 701 736884488 736885179 1.880000e-98 370.0
30 TraesCS7A01G568300 chr4A 74.183 949 207 29 747 1673 734877512 734878444 1.130000e-95 361.0
31 TraesCS7A01G568300 chr4A 76.579 649 135 14 755 1393 736412002 736411361 1.480000e-89 340.0
32 TraesCS7A01G568300 chr4A 74.693 652 152 11 747 1393 735561402 735560759 1.170000e-70 278.0
33 TraesCS7A01G568300 chr4A 74.294 708 159 12 747 1447 735690356 735691047 1.170000e-70 278.0
34 TraesCS7A01G568300 chr4A 75.929 565 119 14 1478 2029 735769176 735769736 1.520000e-69 274.0
35 TraesCS7A01G568300 chr4A 74.924 654 129 26 747 1393 734586442 734587067 2.540000e-67 267.0
36 TraesCS7A01G568300 chr4A 87.075 147 19 0 3903 4049 729479238 729479092 2.650000e-37 167.0
37 TraesCS7A01G568300 chr3A 74.646 1838 426 31 1477 3288 557417057 557415234 0.000000e+00 776.0
38 TraesCS7A01G568300 chr3B 74.322 1807 428 28 1484 3266 559890706 559892500 0.000000e+00 734.0
39 TraesCS7A01G568300 chr3B 75.984 737 160 16 19 748 559887342 559888068 8.760000e-97 364.0
40 TraesCS7A01G568300 chrUn 73.561 1842 444 25 1477 3295 62077788 62075967 0.000000e+00 664.0
41 TraesCS7A01G568300 chr6D 73.499 1849 433 42 1477 3295 469802193 469804014 0.000000e+00 647.0
42 TraesCS7A01G568300 chr7D 71.727 2582 628 68 747 3269 5665544 5663006 7.820000e-177 630.0
43 TraesCS7A01G568300 chr7D 74.893 701 145 23 755 1447 5648073 5647396 1.510000e-74 291.0
44 TraesCS7A01G568300 chr7D 80.531 113 20 2 2663 2774 632041309 632041198 7.640000e-13 86.1
45 TraesCS7A01G568300 chr1A 78.138 709 146 9 19 724 551463129 551462427 3.930000e-120 442.0
46 TraesCS7A01G568300 chr1B 76.000 725 144 20 748 1463 631220656 631219953 8.820000e-92 348.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G568300 chr7A 736341213 736345498 4285 False 7915.000000 7915 100.000000 1 4286 1 chr7A.!!$F4 4285
1 TraesCS7A01G568300 chr7A 736259137 736259869 732 False 440.000000 440 77.973000 2742 3462 1 chr7A.!!$F2 720
2 TraesCS7A01G568300 chr7A 735814119 735814983 864 False 285.000000 316 84.324000 3179 3799 2 chr7A.!!$F5 620
3 TraesCS7A01G568300 chr7B 744256920 744260303 3383 True 3073.000000 3073 83.294000 4 3361 1 chr7B.!!$R2 3357
4 TraesCS7A01G568300 chr7B 743738703 743742194 3491 False 2928.000000 2928 82.102000 4 3462 1 chr7B.!!$F1 3458
5 TraesCS7A01G568300 chr7B 746525144 746528366 3222 True 1875.000000 1875 77.778000 279 3465 1 chr7B.!!$R3 3186
6 TraesCS7A01G568300 chr7B 746738699 746740967 2268 False 1722.000000 1722 80.741000 502 2749 1 chr7B.!!$F6 2247
7 TraesCS7A01G568300 chr7B 743815475 743818916 3441 False 1711.000000 2470 86.622000 6 3403 2 chr7B.!!$F7 3397
8 TraesCS7A01G568300 chr7B 744104709 744110093 5384 True 924.750000 1762 85.290500 4 4286 4 chr7B.!!$R4 4282
9 TraesCS7A01G568300 chr7B 744348053 744348781 728 False 907.000000 907 89.101000 14 746 1 chr7B.!!$F5 732
10 TraesCS7A01G568300 chr7B 744312251 744313363 1112 False 652.000000 652 77.846000 2209 3307 1 chr7B.!!$F4 1098
11 TraesCS7A01G568300 chr5B 604164978 604166153 1175 False 1775.000000 1775 94.053000 1520 2685 1 chr5B.!!$F1 1165
12 TraesCS7A01G568300 chr3D 428247484 428255239 7755 False 613.666667 785 74.829333 19 3314 3 chr3D.!!$F1 3295
13 TraesCS7A01G568300 chr4A 735021587 735024104 2517 False 784.000000 784 72.724000 749 3266 1 chr4A.!!$F3 2517
14 TraesCS7A01G568300 chr4A 736121025 736123545 2520 False 676.000000 676 72.127000 747 3266 1 chr4A.!!$F6 2519
15 TraesCS7A01G568300 chr4A 736148581 736151125 2544 False 671.000000 671 72.042000 747 3266 1 chr4A.!!$F7 2519
16 TraesCS7A01G568300 chr4A 736884488 736887821 3333 False 454.000000 538 74.561500 4 3266 2 chr4A.!!$F8 3262
17 TraesCS7A01G568300 chr4A 734877512 734878444 932 False 361.000000 361 74.183000 747 1673 1 chr4A.!!$F2 926
18 TraesCS7A01G568300 chr4A 736411361 736412002 641 True 340.000000 340 76.579000 755 1393 1 chr4A.!!$R3 638
19 TraesCS7A01G568300 chr4A 735560759 735561402 643 True 278.000000 278 74.693000 747 1393 1 chr4A.!!$R2 646
20 TraesCS7A01G568300 chr4A 735690356 735691047 691 False 278.000000 278 74.294000 747 1447 1 chr4A.!!$F4 700
21 TraesCS7A01G568300 chr4A 735769176 735769736 560 False 274.000000 274 75.929000 1478 2029 1 chr4A.!!$F5 551
22 TraesCS7A01G568300 chr4A 734586442 734587067 625 False 267.000000 267 74.924000 747 1393 1 chr4A.!!$F1 646
23 TraesCS7A01G568300 chr3A 557415234 557417057 1823 True 776.000000 776 74.646000 1477 3288 1 chr3A.!!$R1 1811
24 TraesCS7A01G568300 chr3B 559887342 559892500 5158 False 549.000000 734 75.153000 19 3266 2 chr3B.!!$F1 3247
25 TraesCS7A01G568300 chrUn 62075967 62077788 1821 True 664.000000 664 73.561000 1477 3295 1 chrUn.!!$R1 1818
26 TraesCS7A01G568300 chr6D 469802193 469804014 1821 False 647.000000 647 73.499000 1477 3295 1 chr6D.!!$F1 1818
27 TraesCS7A01G568300 chr7D 5663006 5665544 2538 True 630.000000 630 71.727000 747 3269 1 chr7D.!!$R2 2522
28 TraesCS7A01G568300 chr7D 5647396 5648073 677 True 291.000000 291 74.893000 755 1447 1 chr7D.!!$R1 692
29 TraesCS7A01G568300 chr1A 551462427 551463129 702 True 442.000000 442 78.138000 19 724 1 chr1A.!!$R1 705
30 TraesCS7A01G568300 chr1B 631219953 631220656 703 True 348.000000 348 76.000000 748 1463 1 chr1B.!!$R1 715

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
176 4600 1.273327 GGAAAATCCACCTTGGCACAG 59.727 52.381 0.00 0.00 36.45 3.66 F
1232 5791 0.100325 TTCCAACACGTGCTGCAAAG 59.900 50.000 17.22 4.18 0.00 2.77 F
1896 8351 0.752743 TGCTACCATCCAATGCTGGC 60.753 55.000 0.73 0.00 43.17 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1747 8200 0.034477 CCCCTAATTTGAGGCGGTGT 60.034 55.000 0.0 0.0 35.00 4.16 R
2042 8498 1.075374 TCATGGTGTTCTCCCTTTGGG 59.925 52.381 0.0 0.0 46.11 4.12 R
3820 11868 0.179140 AAACACAGCCGCAACAACAG 60.179 50.000 0.0 0.0 0.00 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
86 4507 7.564988 GGGACGATATTTTTGATCTTCTTACG 58.435 38.462 0.00 0.00 0.00 3.18
176 4600 1.273327 GGAAAATCCACCTTGGCACAG 59.727 52.381 0.00 0.00 36.45 3.66
252 4676 1.853646 GCATCTCGCGCAAACTTGATC 60.854 52.381 8.75 0.00 0.00 2.92
387 4811 3.926616 AGATACCTTCTTGTGTTGGACG 58.073 45.455 0.00 0.00 0.00 4.79
388 4812 3.576982 AGATACCTTCTTGTGTTGGACGA 59.423 43.478 0.00 0.00 0.00 4.20
389 4813 1.949465 ACCTTCTTGTGTTGGACGAC 58.051 50.000 0.00 0.00 0.00 4.34
564 4988 5.923733 AGACATGGAAGATACCGATATCC 57.076 43.478 0.00 0.00 38.43 2.59
582 5006 2.889512 TCCTAGCACTCTTCAAGGACA 58.110 47.619 0.00 0.00 31.41 4.02
601 5025 1.342174 CAATGCCTTTTCTGGTGCAGT 59.658 47.619 0.00 0.00 37.12 4.40
658 5082 4.440880 ACTATTGCAGAGAAGCTTGCTAG 58.559 43.478 2.10 3.34 34.99 3.42
742 5172 1.648116 AAGGCTGCATGGGAAAATGT 58.352 45.000 0.50 0.00 0.00 2.71
836 5308 6.715347 ATATCCAAAAGGCCACTTGTATTC 57.285 37.500 5.01 0.00 36.93 1.75
857 5329 6.385649 TTCAATTAAGGAGTTGGTTCACAC 57.614 37.500 0.00 0.00 0.00 3.82
904 5376 2.034053 TCGCCCAATGTGAACAAGAAAC 59.966 45.455 0.00 0.00 0.00 2.78
923 5402 2.422746 ACTGGAAGATATTGGGAGGGG 58.577 52.381 0.00 0.00 37.43 4.79
926 5405 3.205282 CTGGAAGATATTGGGAGGGGTTT 59.795 47.826 0.00 0.00 34.07 3.27
980 5504 7.499321 TTCAACCAGTTTACGTAAATGACAT 57.501 32.000 22.65 8.12 0.00 3.06
981 5505 8.604640 TTCAACCAGTTTACGTAAATGACATA 57.395 30.769 22.65 5.86 0.00 2.29
982 5506 8.246908 TCAACCAGTTTACGTAAATGACATAG 57.753 34.615 22.65 11.17 0.00 2.23
983 5507 7.874016 TCAACCAGTTTACGTAAATGACATAGT 59.126 33.333 22.65 11.17 0.00 2.12
985 5509 8.025243 ACCAGTTTACGTAAATGACATAGTTG 57.975 34.615 22.65 6.06 0.00 3.16
986 5510 7.118680 ACCAGTTTACGTAAATGACATAGTTGG 59.881 37.037 22.65 15.23 0.00 3.77
987 5511 7.413657 CCAGTTTACGTAAATGACATAGTTGGG 60.414 40.741 22.65 7.93 0.00 4.12
988 5512 6.596497 AGTTTACGTAAATGACATAGTTGGGG 59.404 38.462 22.65 0.00 0.00 4.96
989 5513 4.829872 ACGTAAATGACATAGTTGGGGA 57.170 40.909 0.00 0.00 0.00 4.81
1035 5589 5.573282 CGTTCATGATTTCGTAGAGTCACTT 59.427 40.000 0.00 0.00 38.43 3.16
1144 5698 7.387948 AGAGTTTGAAGCAACATAAATACTCGT 59.612 33.333 0.00 0.00 0.00 4.18
1147 5701 6.089920 TGAAGCAACATAAATACTCGTTCG 57.910 37.500 0.00 0.00 0.00 3.95
1152 5706 2.864343 ACATAAATACTCGTTCGGCAGC 59.136 45.455 0.00 0.00 0.00 5.25
1218 5777 7.558807 ACAGATGATGCAAGAGATATTTTCCAA 59.441 33.333 0.00 0.00 0.00 3.53
1221 5780 6.855836 TGATGCAAGAGATATTTTCCAACAC 58.144 36.000 0.00 0.00 0.00 3.32
1232 5791 0.100325 TTCCAACACGTGCTGCAAAG 59.900 50.000 17.22 4.18 0.00 2.77
1257 5816 2.656560 AGAAGCTGCGTGTACTTAGG 57.343 50.000 0.00 0.00 0.00 2.69
1326 5885 1.053424 AGCACCTTCGGTACTTGGAA 58.947 50.000 0.00 0.00 32.11 3.53
1341 5900 4.484912 ACTTGGAACTCAGAGGTACTTCT 58.515 43.478 0.82 0.82 41.55 2.85
1461 6020 9.998106 AGTTTAAGTAAGCTGAGATACTTTGAA 57.002 29.630 12.53 6.99 41.35 2.69
1582 8017 6.361114 CAGCAGCTAAAAGATATGAATGACG 58.639 40.000 0.00 0.00 0.00 4.35
1628 8063 3.969287 TCTTGAGAATGTCACTGGGAG 57.031 47.619 0.00 0.00 33.71 4.30
1747 8200 3.261897 GGAAACTCTGGAAGGTCTGATGA 59.738 47.826 0.00 0.00 0.00 2.92
1878 8333 7.144722 TGTTGATTGTAGTGCCTTAGAAATG 57.855 36.000 0.00 0.00 0.00 2.32
1896 8351 0.752743 TGCTACCATCCAATGCTGGC 60.753 55.000 0.73 0.00 43.17 4.85
2042 8498 2.932614 ACGATGAGCTAGAACAACATGC 59.067 45.455 0.00 0.00 0.00 4.06
2160 8616 5.089970 TGTCGGAACATTCATCTCTCATT 57.910 39.130 0.00 0.00 0.00 2.57
2195 8660 7.232188 ACATTGATGGATGCTGATATTTCTCT 58.768 34.615 0.00 0.00 0.00 3.10
2240 8717 2.408565 ACAAAGAGAGGGTGGTGAAGA 58.591 47.619 0.00 0.00 0.00 2.87
2245 8722 2.982488 AGAGAGGGTGGTGAAGAATTGT 59.018 45.455 0.00 0.00 0.00 2.71
2247 8724 4.141158 AGAGAGGGTGGTGAAGAATTGTTT 60.141 41.667 0.00 0.00 0.00 2.83
2327 8808 1.463674 AAAAGGAACATAGGCCTGCG 58.536 50.000 17.99 8.82 34.00 5.18
2703 9186 5.504665 CGATTTCATCAGTATTGACTTGCCC 60.505 44.000 0.00 0.00 35.83 5.36
2740 9223 0.172803 CATGGCTTTCTGCAGAAGCC 59.827 55.000 37.10 37.10 45.15 4.35
2829 9312 0.884514 GCTTCCTTGAAGGCTTGTCC 59.115 55.000 3.46 0.00 39.76 4.02
2853 9339 2.813179 GCAACTATCCAGCGCACGG 61.813 63.158 11.47 10.32 0.00 4.94
2994 9486 4.826274 TCCAGAATTTCTCGGTCTTGAT 57.174 40.909 11.96 0.00 0.00 2.57
3000 9492 3.981071 TTTCTCGGTCTTGATGGATGT 57.019 42.857 0.00 0.00 0.00 3.06
3027 9522 6.017933 CGAGTCCTTTTCATTTGAAGAATCG 58.982 40.000 12.90 12.90 37.69 3.34
3051 9546 5.469421 GGCAGATTTCTCATCTATCAAGTGG 59.531 44.000 0.00 0.00 0.00 4.00
3074 9569 6.036953 TGGCTGTCATTTTTGAATTGTGAAAC 59.963 34.615 0.00 0.00 37.35 2.78
3177 9679 2.043526 ACCTGATTTGCCATCTTCCCTT 59.956 45.455 0.00 0.00 0.00 3.95
3266 9771 3.225104 GGCCAAAGATTGAGCATATCCA 58.775 45.455 0.00 0.00 0.00 3.41
3324 9829 7.553881 TGCAACTATATAGAAACAGAAAGGC 57.446 36.000 16.79 5.24 0.00 4.35
3355 9863 3.799420 CACCTGCTCGCTCTAAAATAGAC 59.201 47.826 0.00 0.00 0.00 2.59
3361 9869 4.551603 GCTCGCTCTAAAATAGACGACGTA 60.552 45.833 0.00 0.00 35.25 3.57
3363 9871 5.438117 TCGCTCTAAAATAGACGACGTATG 58.562 41.667 5.18 0.00 35.25 2.39
3364 9872 5.007039 TCGCTCTAAAATAGACGACGTATGT 59.993 40.000 5.18 0.00 35.25 2.29
3417 9938 9.628500 ATCTTATGTATTGAAAAGTTACCCTCC 57.372 33.333 0.00 0.00 0.00 4.30
3418 9939 8.607713 TCTTATGTATTGAAAAGTTACCCTCCA 58.392 33.333 0.00 0.00 0.00 3.86
3420 9941 9.762381 TTATGTATTGAAAAGTTACCCTCCATT 57.238 29.630 0.00 0.00 0.00 3.16
3422 9943 9.762381 ATGTATTGAAAAGTTACCCTCCATTAA 57.238 29.630 0.00 0.00 0.00 1.40
3462 9984 6.783892 TTCATTTATTTTCAAACAGCAGGC 57.216 33.333 0.00 0.00 0.00 4.85
3468 9990 2.128771 TTCAAACAGCAGGCCTATCC 57.871 50.000 3.98 0.00 0.00 2.59
3507 10039 0.250234 CTGAGGTGGAGCGGATTTCA 59.750 55.000 0.00 0.00 0.00 2.69
3508 10040 0.690192 TGAGGTGGAGCGGATTTCAA 59.310 50.000 0.00 0.00 0.00 2.69
3509 10041 1.073125 TGAGGTGGAGCGGATTTCAAA 59.927 47.619 0.00 0.00 0.00 2.69
3510 10042 1.468914 GAGGTGGAGCGGATTTCAAAC 59.531 52.381 0.00 0.00 0.00 2.93
3511 10043 1.202879 AGGTGGAGCGGATTTCAAACA 60.203 47.619 0.00 0.00 0.00 2.83
3515 10057 1.401539 GGAGCGGATTTCAAACAGCAC 60.402 52.381 0.00 0.00 0.00 4.40
3521 10063 3.003689 CGGATTTCAAACAGCACTTCAGT 59.996 43.478 0.00 0.00 0.00 3.41
3556 10337 7.173218 GTGTCTTGTTTTGTTATCCTCATCTCA 59.827 37.037 0.00 0.00 0.00 3.27
3588 10369 6.153627 CCTTTTGGTTGGTACTGGTTGTACT 61.154 44.000 6.02 0.00 41.81 2.73
3589 10370 8.119736 CCTTTTGGTTGGTACTGGTTGTACTG 62.120 46.154 6.02 0.00 41.81 2.74
3602 10383 2.370281 TGTACTGCTAGCTTCTGTGC 57.630 50.000 17.23 12.73 0.00 4.57
3604 10385 2.094494 TGTACTGCTAGCTTCTGTGCTC 60.094 50.000 17.23 6.06 42.97 4.26
3606 10387 1.067000 ACTGCTAGCTTCTGTGCTCTG 60.067 52.381 17.23 0.00 42.97 3.35
3624 10405 4.615949 CTCTGTATGCTGTGATGTACTCC 58.384 47.826 0.00 0.00 0.00 3.85
3653 10434 7.659186 AGAGTTAATAATCTCCATGTACCGTC 58.341 38.462 0.00 0.00 0.00 4.79
3654 10435 7.287005 AGAGTTAATAATCTCCATGTACCGTCA 59.713 37.037 0.00 0.00 0.00 4.35
3687 10485 8.871686 ACTTGTGAAGTTCATTTTTGGATTAC 57.128 30.769 9.18 0.00 39.04 1.89
3688 10486 7.926018 ACTTGTGAAGTTCATTTTTGGATTACC 59.074 33.333 9.18 0.00 39.04 2.85
3818 11866 3.557228 GGAGATTGTCCATTCTCAGCT 57.443 47.619 16.65 0.00 46.10 4.24
3819 11867 3.204526 GGAGATTGTCCATTCTCAGCTG 58.795 50.000 7.63 7.63 46.10 4.24
3820 11868 2.613133 GAGATTGTCCATTCTCAGCTGC 59.387 50.000 9.47 0.00 37.61 5.25
3821 11869 2.239150 AGATTGTCCATTCTCAGCTGCT 59.761 45.455 9.47 0.00 0.00 4.24
3822 11870 1.817357 TTGTCCATTCTCAGCTGCTG 58.183 50.000 23.31 23.31 0.00 4.41
3823 11871 0.689055 TGTCCATTCTCAGCTGCTGT 59.311 50.000 27.24 7.11 32.61 4.40
3824 11872 1.072806 TGTCCATTCTCAGCTGCTGTT 59.927 47.619 27.24 9.89 32.61 3.16
3825 11873 1.467734 GTCCATTCTCAGCTGCTGTTG 59.532 52.381 27.24 20.57 32.61 3.33
3826 11874 1.072806 TCCATTCTCAGCTGCTGTTGT 59.927 47.619 27.24 10.89 32.61 3.32
3827 11875 1.884579 CCATTCTCAGCTGCTGTTGTT 59.115 47.619 27.24 10.22 32.61 2.83
3828 11876 2.351447 CCATTCTCAGCTGCTGTTGTTG 60.351 50.000 27.24 19.50 32.61 3.33
3829 11877 0.664761 TTCTCAGCTGCTGTTGTTGC 59.335 50.000 27.24 0.00 32.61 4.17
3830 11878 1.082300 CTCAGCTGCTGTTGTTGCG 60.082 57.895 27.24 1.19 32.61 4.85
3831 11879 2.050714 CAGCTGCTGTTGTTGCGG 60.051 61.111 21.21 0.00 39.61 5.69
3834 11882 2.050714 CTGCTGTTGTTGCGGCTG 60.051 61.111 0.00 0.00 41.12 4.85
3835 11883 2.828095 TGCTGTTGTTGCGGCTGT 60.828 55.556 0.00 0.00 41.12 4.40
3836 11884 2.353839 GCTGTTGTTGCGGCTGTG 60.354 61.111 0.00 0.00 37.74 3.66
3837 11885 3.110139 CTGTTGTTGCGGCTGTGT 58.890 55.556 0.00 0.00 0.00 3.72
3838 11886 1.433064 CTGTTGTTGCGGCTGTGTT 59.567 52.632 0.00 0.00 0.00 3.32
3839 11887 0.179140 CTGTTGTTGCGGCTGTGTTT 60.179 50.000 0.00 0.00 0.00 2.83
3840 11888 0.457509 TGTTGTTGCGGCTGTGTTTG 60.458 50.000 0.00 0.00 0.00 2.93
3841 11889 1.518133 TTGTTGCGGCTGTGTTTGC 60.518 52.632 0.00 0.00 0.00 3.68
3842 11890 2.103934 GTTGCGGCTGTGTTTGCA 59.896 55.556 0.00 0.00 35.15 4.08
3843 11891 1.945662 GTTGCGGCTGTGTTTGCAG 60.946 57.895 0.00 0.00 38.75 4.41
3844 11892 2.117779 TTGCGGCTGTGTTTGCAGA 61.118 52.632 0.00 0.00 38.75 4.26
3845 11893 1.454572 TTGCGGCTGTGTTTGCAGAT 61.455 50.000 0.00 0.00 38.75 2.90
3846 11894 1.443194 GCGGCTGTGTTTGCAGATG 60.443 57.895 0.00 0.00 38.70 2.90
3847 11895 1.951510 CGGCTGTGTTTGCAGATGT 59.048 52.632 0.00 0.00 38.70 3.06
3848 11896 0.311790 CGGCTGTGTTTGCAGATGTT 59.688 50.000 0.00 0.00 38.70 2.71
3849 11897 1.664016 CGGCTGTGTTTGCAGATGTTC 60.664 52.381 0.00 0.00 38.70 3.18
3850 11898 1.610522 GGCTGTGTTTGCAGATGTTCT 59.389 47.619 0.00 0.00 38.70 3.01
3851 11899 2.351157 GGCTGTGTTTGCAGATGTTCTC 60.351 50.000 0.00 0.00 38.70 2.87
3855 11903 3.947196 TGTGTTTGCAGATGTTCTCAGTT 59.053 39.130 0.00 0.00 0.00 3.16
3859 11907 3.708403 TGCAGATGTTCTCAGTTGGAT 57.292 42.857 0.00 0.00 0.00 3.41
3860 11908 4.824479 TGCAGATGTTCTCAGTTGGATA 57.176 40.909 0.00 0.00 0.00 2.59
3913 11961 6.702716 AAAAGAAATAACGGAAAGGTGTGA 57.297 33.333 0.00 0.00 0.00 3.58
3914 11962 5.684550 AAGAAATAACGGAAAGGTGTGAC 57.315 39.130 0.00 0.00 0.00 3.67
3915 11963 4.969484 AGAAATAACGGAAAGGTGTGACT 58.031 39.130 0.00 0.00 0.00 3.41
3916 11964 6.105397 AGAAATAACGGAAAGGTGTGACTA 57.895 37.500 0.00 0.00 0.00 2.59
3917 11965 6.708285 AGAAATAACGGAAAGGTGTGACTAT 58.292 36.000 0.00 0.00 0.00 2.12
3918 11966 7.166167 AGAAATAACGGAAAGGTGTGACTATT 58.834 34.615 0.00 0.00 0.00 1.73
3919 11967 6.980051 AATAACGGAAAGGTGTGACTATTC 57.020 37.500 0.00 0.00 0.00 1.75
3920 11968 4.618920 AACGGAAAGGTGTGACTATTCT 57.381 40.909 0.00 0.00 0.00 2.40
3921 11969 4.189639 ACGGAAAGGTGTGACTATTCTC 57.810 45.455 0.00 0.00 0.00 2.87
3922 11970 3.833070 ACGGAAAGGTGTGACTATTCTCT 59.167 43.478 0.00 0.00 0.00 3.10
3923 11971 4.177026 CGGAAAGGTGTGACTATTCTCTG 58.823 47.826 0.00 0.00 0.00 3.35
3924 11972 4.508662 GGAAAGGTGTGACTATTCTCTGG 58.491 47.826 0.00 0.00 0.00 3.86
3925 11973 4.020128 GGAAAGGTGTGACTATTCTCTGGT 60.020 45.833 0.00 0.00 0.00 4.00
3926 11974 4.543590 AAGGTGTGACTATTCTCTGGTG 57.456 45.455 0.00 0.00 0.00 4.17
3927 11975 3.511477 AGGTGTGACTATTCTCTGGTGT 58.489 45.455 0.00 0.00 0.00 4.16
3928 11976 4.673968 AGGTGTGACTATTCTCTGGTGTA 58.326 43.478 0.00 0.00 0.00 2.90
3929 11977 4.707448 AGGTGTGACTATTCTCTGGTGTAG 59.293 45.833 0.00 0.00 0.00 2.74
3930 11978 4.463186 GGTGTGACTATTCTCTGGTGTAGT 59.537 45.833 0.00 0.00 0.00 2.73
3931 11979 5.651139 GGTGTGACTATTCTCTGGTGTAGTA 59.349 44.000 0.00 0.00 0.00 1.82
3932 11980 6.404513 GGTGTGACTATTCTCTGGTGTAGTAC 60.405 46.154 0.00 0.00 0.00 2.73
3933 11981 6.150641 GTGTGACTATTCTCTGGTGTAGTACA 59.849 42.308 0.00 0.00 0.00 2.90
3944 11992 2.064014 GTGTAGTACACCCGAGTTTGC 58.936 52.381 20.77 0.00 43.05 3.68
3945 11993 1.687660 TGTAGTACACCCGAGTTTGCA 59.312 47.619 0.00 0.00 0.00 4.08
3946 11994 2.102757 TGTAGTACACCCGAGTTTGCAA 59.897 45.455 0.00 0.00 0.00 4.08
3947 11995 2.335316 AGTACACCCGAGTTTGCAAA 57.665 45.000 8.05 8.05 0.00 3.68
3948 11996 2.645802 AGTACACCCGAGTTTGCAAAA 58.354 42.857 14.67 0.00 0.00 2.44
3949 11997 3.018149 AGTACACCCGAGTTTGCAAAAA 58.982 40.909 14.67 0.00 0.00 1.94
4007 12055 9.768662 AAATCTGAAATTTTGTGATAGCAAACT 57.231 25.926 0.00 0.00 37.98 2.66
4008 12056 9.768662 AATCTGAAATTTTGTGATAGCAAACTT 57.231 25.926 0.00 0.00 37.98 2.66
4009 12057 9.768662 ATCTGAAATTTTGTGATAGCAAACTTT 57.231 25.926 6.59 6.59 41.00 2.66
4018 12066 9.979578 TTTGTGATAGCAAACTTTATCAAATGT 57.020 25.926 0.00 0.00 37.86 2.71
4019 12067 9.979578 TTGTGATAGCAAACTTTATCAAATGTT 57.020 25.926 0.00 0.00 37.86 2.71
4020 12068 9.979578 TGTGATAGCAAACTTTATCAAATGTTT 57.020 25.926 0.00 0.00 41.23 2.83
4026 12074 7.495135 CAAACTTTATCAAATGTTTGGGCTT 57.505 32.000 16.06 0.00 46.59 4.35
4027 12075 7.575365 CAAACTTTATCAAATGTTTGGGCTTC 58.425 34.615 16.06 0.00 46.59 3.86
4028 12076 6.670695 ACTTTATCAAATGTTTGGGCTTCT 57.329 33.333 5.71 0.00 38.66 2.85
4029 12077 7.066307 ACTTTATCAAATGTTTGGGCTTCTT 57.934 32.000 5.71 0.00 38.66 2.52
4030 12078 6.930722 ACTTTATCAAATGTTTGGGCTTCTTG 59.069 34.615 5.71 0.00 38.66 3.02
4031 12079 3.110447 TCAAATGTTTGGGCTTCTTGC 57.890 42.857 5.71 0.00 38.66 4.01
4032 12080 2.433604 TCAAATGTTTGGGCTTCTTGCA 59.566 40.909 5.71 0.00 39.04 4.08
4033 12081 3.118482 TCAAATGTTTGGGCTTCTTGCAA 60.118 39.130 0.00 0.00 39.04 4.08
4034 12082 3.557228 AATGTTTGGGCTTCTTGCAAA 57.443 38.095 0.00 0.00 45.15 3.68
4035 12083 3.557228 ATGTTTGGGCTTCTTGCAAAA 57.443 38.095 0.00 0.00 45.15 2.44
4036 12084 3.557228 TGTTTGGGCTTCTTGCAAAAT 57.443 38.095 0.00 0.00 45.15 1.82
4037 12085 3.883669 TGTTTGGGCTTCTTGCAAAATT 58.116 36.364 0.00 0.00 45.15 1.82
4038 12086 4.268359 TGTTTGGGCTTCTTGCAAAATTT 58.732 34.783 0.00 0.00 45.15 1.82
4039 12087 4.335037 TGTTTGGGCTTCTTGCAAAATTTC 59.665 37.500 0.00 0.00 45.15 2.17
4040 12088 3.834489 TGGGCTTCTTGCAAAATTTCA 57.166 38.095 0.00 0.00 45.15 2.69
4041 12089 3.731089 TGGGCTTCTTGCAAAATTTCAG 58.269 40.909 0.00 0.00 45.15 3.02
4042 12090 2.481568 GGGCTTCTTGCAAAATTTCAGC 59.518 45.455 0.00 8.24 45.15 4.26
4043 12091 2.481568 GGCTTCTTGCAAAATTTCAGCC 59.518 45.455 0.00 7.45 45.15 4.85
4044 12092 3.132925 GCTTCTTGCAAAATTTCAGCCA 58.867 40.909 0.00 2.25 42.31 4.75
4045 12093 3.560896 GCTTCTTGCAAAATTTCAGCCAA 59.439 39.130 0.00 6.67 42.31 4.52
4046 12094 4.035441 GCTTCTTGCAAAATTTCAGCCAAA 59.965 37.500 0.00 2.17 42.31 3.28
4047 12095 5.448904 GCTTCTTGCAAAATTTCAGCCAAAA 60.449 36.000 0.00 4.32 42.31 2.44
4048 12096 6.506500 TTCTTGCAAAATTTCAGCCAAAAA 57.493 29.167 0.00 1.34 0.00 1.94
4049 12097 6.121613 TCTTGCAAAATTTCAGCCAAAAAG 57.878 33.333 0.00 8.99 0.00 2.27
4050 12098 5.647225 TCTTGCAAAATTTCAGCCAAAAAGT 59.353 32.000 0.00 0.00 0.00 2.66
4051 12099 6.820656 TCTTGCAAAATTTCAGCCAAAAAGTA 59.179 30.769 0.00 0.53 0.00 2.24
4052 12100 6.356757 TGCAAAATTTCAGCCAAAAAGTAC 57.643 33.333 11.62 0.00 0.00 2.73
4053 12101 5.877012 TGCAAAATTTCAGCCAAAAAGTACA 59.123 32.000 11.62 0.00 0.00 2.90
4054 12102 6.183360 TGCAAAATTTCAGCCAAAAAGTACAC 60.183 34.615 11.62 0.00 0.00 2.90
4055 12103 6.037062 GCAAAATTTCAGCCAAAAAGTACACT 59.963 34.615 0.00 0.00 0.00 3.55
4056 12104 7.413988 GCAAAATTTCAGCCAAAAAGTACACTT 60.414 33.333 0.00 0.00 37.91 3.16
4057 12105 7.770801 AAATTTCAGCCAAAAAGTACACTTC 57.229 32.000 0.00 0.00 34.61 3.01
4058 12106 5.906113 TTTCAGCCAAAAAGTACACTTCA 57.094 34.783 0.00 0.00 34.61 3.02
4059 12107 5.499139 TTCAGCCAAAAAGTACACTTCAG 57.501 39.130 0.00 0.00 34.61 3.02
4089 12137 1.266178 TCACGGGATCTTGAGCAGAA 58.734 50.000 0.00 0.00 34.16 3.02
4096 12144 3.055530 GGGATCTTGAGCAGAAGTTCAGA 60.056 47.826 5.50 0.00 36.32 3.27
4100 12148 4.738124 TCTTGAGCAGAAGTTCAGATACG 58.262 43.478 5.50 0.00 36.32 3.06
4103 12151 3.182967 GAGCAGAAGTTCAGATACGGTG 58.817 50.000 5.50 0.00 0.00 4.94
4107 12155 2.563179 AGAAGTTCAGATACGGTGCAGT 59.437 45.455 5.50 0.00 0.00 4.40
4113 12161 3.086282 TCAGATACGGTGCAGTACTGAA 58.914 45.455 27.08 14.25 39.08 3.02
4140 12188 5.405571 TCGACTGCTTTCTGAATAAGTTGAC 59.594 40.000 10.92 0.00 0.00 3.18
4156 12204 9.814899 AATAAGTTGACAGTATGATTCTCTCTG 57.185 33.333 0.00 0.00 39.69 3.35
4161 12209 6.183347 TGACAGTATGATTCTCTCTGAGTGA 58.817 40.000 4.32 4.89 39.69 3.41
4182 12230 5.120830 GTGACATCAGATTAGCACGAACTTT 59.879 40.000 0.00 0.00 0.00 2.66
4183 12231 5.348724 TGACATCAGATTAGCACGAACTTTC 59.651 40.000 0.00 0.00 0.00 2.62
4184 12232 5.237815 ACATCAGATTAGCACGAACTTTCA 58.762 37.500 0.00 0.00 0.00 2.69
4188 12236 7.202016 TCAGATTAGCACGAACTTTCATTTT 57.798 32.000 0.00 0.00 0.00 1.82
4195 12243 5.973565 AGCACGAACTTTCATTTTCAAGAAG 59.026 36.000 0.00 0.00 0.00 2.85
4196 12244 5.331830 GCACGAACTTTCATTTTCAAGAAGC 60.332 40.000 0.00 0.00 0.00 3.86
4197 12245 5.973565 CACGAACTTTCATTTTCAAGAAGCT 59.026 36.000 0.00 0.00 0.00 3.74
4198 12246 5.973565 ACGAACTTTCATTTTCAAGAAGCTG 59.026 36.000 0.00 0.00 0.00 4.24
4199 12247 5.108103 CGAACTTTCATTTTCAAGAAGCTGC 60.108 40.000 0.00 0.00 0.00 5.25
4200 12248 4.625028 ACTTTCATTTTCAAGAAGCTGCC 58.375 39.130 0.00 0.00 0.00 4.85
4202 12250 4.877378 TTCATTTTCAAGAAGCTGCCAT 57.123 36.364 0.00 0.00 0.00 4.40
4203 12251 4.445452 TCATTTTCAAGAAGCTGCCATC 57.555 40.909 0.00 0.00 0.00 3.51
4204 12252 4.084287 TCATTTTCAAGAAGCTGCCATCT 58.916 39.130 0.00 0.00 0.00 2.90
4206 12254 5.124457 TCATTTTCAAGAAGCTGCCATCTAC 59.876 40.000 6.05 0.00 0.00 2.59
4207 12255 3.988976 TTCAAGAAGCTGCCATCTACT 57.011 42.857 6.05 0.00 0.00 2.57
4208 12256 3.257469 TCAAGAAGCTGCCATCTACTG 57.743 47.619 6.05 3.07 0.00 2.74
4209 12257 2.833943 TCAAGAAGCTGCCATCTACTGA 59.166 45.455 6.05 5.08 0.00 3.41
4210 12258 3.261643 TCAAGAAGCTGCCATCTACTGAA 59.738 43.478 6.05 0.00 0.00 3.02
4211 12259 3.258971 AGAAGCTGCCATCTACTGAAC 57.741 47.619 3.96 0.00 0.00 3.18
4212 12260 2.093235 AGAAGCTGCCATCTACTGAACC 60.093 50.000 3.96 0.00 0.00 3.62
4220 12273 3.686726 GCCATCTACTGAACCTGAAACTG 59.313 47.826 0.00 0.00 0.00 3.16
4233 12286 1.333308 TGAAACTGAACATGTGTGCCG 59.667 47.619 0.00 0.00 0.00 5.69
4268 12321 6.208204 AGTTGCTCATCTGCACTAAGAAAATT 59.792 34.615 0.00 0.00 43.20 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 7.649306 GCAAATGATGTATCAACTGGAATAACC 59.351 37.037 0.00 0.00 40.69 2.85
176 4600 8.556213 TTACCCTCTTGTCATTGTAAACATAC 57.444 34.615 0.00 0.00 0.00 2.39
252 4676 0.036388 AACCGTGTATGGCCACTGAG 60.036 55.000 8.16 0.00 33.07 3.35
387 4811 3.914312 TCTCTTCAAACCAGACATCGTC 58.086 45.455 0.00 0.00 0.00 4.20
388 4812 4.058817 GTTCTCTTCAAACCAGACATCGT 58.941 43.478 0.00 0.00 0.00 3.73
389 4813 4.058124 TGTTCTCTTCAAACCAGACATCG 58.942 43.478 0.00 0.00 0.00 3.84
564 4988 3.373439 GCATTGTCCTTGAAGAGTGCTAG 59.627 47.826 0.00 0.00 0.00 3.42
582 5006 1.708341 ACTGCACCAGAAAAGGCATT 58.292 45.000 0.00 0.00 35.45 3.56
601 5025 1.835494 CACCTTCTGGTCTCCGACTA 58.165 55.000 0.00 0.00 46.60 2.59
742 5172 3.281727 ACTCCACAAAAGTGCTCAGAA 57.718 42.857 0.00 0.00 0.00 3.02
836 5308 4.274950 ACGTGTGAACCAACTCCTTAATTG 59.725 41.667 0.00 0.00 0.00 2.32
857 5329 1.608717 AAGTCCCTCTGCTAGCCACG 61.609 60.000 13.29 0.49 0.00 4.94
904 5376 2.422746 ACCCCTCCCAATATCTTCCAG 58.577 52.381 0.00 0.00 0.00 3.86
926 5405 3.390135 ACGCAGAGAAACTCATCGAAAA 58.610 40.909 15.15 0.00 33.91 2.29
939 5418 4.024048 GGTTGAAAGAATGAAACGCAGAGA 60.024 41.667 0.00 0.00 0.00 3.10
944 5423 3.964909 ACTGGTTGAAAGAATGAAACGC 58.035 40.909 0.00 0.00 0.00 4.84
980 5504 6.427441 TGCATAACACAATATTCCCCAACTA 58.573 36.000 0.00 0.00 0.00 2.24
981 5505 5.268387 TGCATAACACAATATTCCCCAACT 58.732 37.500 0.00 0.00 0.00 3.16
982 5506 5.590530 TGCATAACACAATATTCCCCAAC 57.409 39.130 0.00 0.00 0.00 3.77
983 5507 5.896106 TCATGCATAACACAATATTCCCCAA 59.104 36.000 0.00 0.00 0.00 4.12
985 5509 6.435277 AGATCATGCATAACACAATATTCCCC 59.565 38.462 0.00 0.00 0.00 4.81
986 5510 7.458409 AGATCATGCATAACACAATATTCCC 57.542 36.000 0.00 0.00 0.00 3.97
987 5511 7.095060 ACGAGATCATGCATAACACAATATTCC 60.095 37.037 0.00 0.00 0.00 3.01
988 5512 7.800767 ACGAGATCATGCATAACACAATATTC 58.199 34.615 0.00 0.00 0.00 1.75
989 5513 7.734924 ACGAGATCATGCATAACACAATATT 57.265 32.000 0.00 0.00 0.00 1.28
1023 5577 5.290386 ACTTCTTTGGAAAGTGACTCTACG 58.710 41.667 0.00 0.00 37.31 3.51
1025 5579 6.516718 CAGACTTCTTTGGAAAGTGACTCTA 58.483 40.000 0.00 0.00 37.31 2.43
1144 5698 2.418368 AAATGATGTAGGCTGCCGAA 57.582 45.000 13.96 2.44 0.00 4.30
1147 5701 2.561569 ACGTAAATGATGTAGGCTGCC 58.438 47.619 11.65 11.65 0.00 4.85
1152 5706 9.193133 CAGATAAAGGTACGTAAATGATGTAGG 57.807 37.037 0.00 0.00 29.85 3.18
1218 5777 0.808125 TCAAACTTTGCAGCACGTGT 59.192 45.000 18.38 0.68 0.00 4.49
1221 5780 2.473530 TCTTCAAACTTTGCAGCACG 57.526 45.000 0.00 0.00 0.00 5.34
1232 5791 2.544267 AGTACACGCAGCTTCTTCAAAC 59.456 45.455 0.00 0.00 0.00 2.93
1257 5816 5.371115 TGTTGCTATTGTAAAACCTCAGC 57.629 39.130 0.00 0.00 0.00 4.26
1341 5900 5.837770 ATGATCCAGGCAATTCAGAGATA 57.162 39.130 0.00 0.00 0.00 1.98
1455 6014 2.689983 ACTGCACCCTTCAACTTCAAAG 59.310 45.455 0.00 0.00 0.00 2.77
1456 6015 2.687935 GACTGCACCCTTCAACTTCAAA 59.312 45.455 0.00 0.00 0.00 2.69
1457 6016 2.297701 GACTGCACCCTTCAACTTCAA 58.702 47.619 0.00 0.00 0.00 2.69
1458 6017 1.211703 TGACTGCACCCTTCAACTTCA 59.788 47.619 0.00 0.00 0.00 3.02
1459 6018 1.967319 TGACTGCACCCTTCAACTTC 58.033 50.000 0.00 0.00 0.00 3.01
1460 6019 2.435372 TTGACTGCACCCTTCAACTT 57.565 45.000 0.00 0.00 0.00 2.66
1461 6020 2.435372 TTTGACTGCACCCTTCAACT 57.565 45.000 0.00 0.00 0.00 3.16
1462 6021 2.029918 GGATTTGACTGCACCCTTCAAC 60.030 50.000 0.00 0.00 0.00 3.18
1628 8063 2.717639 TGCTTCTAAGGCTTGATCCC 57.282 50.000 10.69 0.00 0.00 3.85
1747 8200 0.034477 CCCCTAATTTGAGGCGGTGT 60.034 55.000 0.00 0.00 35.00 4.16
2042 8498 1.075374 TCATGGTGTTCTCCCTTTGGG 59.925 52.381 0.00 0.00 46.11 4.12
2160 8616 4.142116 GCATCCATCAATGTCATCAACCAA 60.142 41.667 0.00 0.00 0.00 3.67
2216 8681 3.042682 TCACCACCCTCTCTTTGTACAA 58.957 45.455 3.59 3.59 0.00 2.41
2245 8722 7.449395 CCATGCCTTGATGATATCCTCTTTAAA 59.551 37.037 9.12 0.00 0.00 1.52
2247 8724 6.273026 TCCATGCCTTGATGATATCCTCTTTA 59.727 38.462 9.12 0.00 0.00 1.85
2703 9186 4.038402 GCCATGGAAATATCTTTCAGGTGG 59.962 45.833 18.40 9.97 42.17 4.61
2740 9223 3.940852 TGACCAATCGACAATGATGAAGG 59.059 43.478 0.00 0.00 0.00 3.46
2853 9339 2.817844 GAGGTTGGGGACATGTGTAAAC 59.182 50.000 1.15 2.41 42.32 2.01
2994 9486 4.610605 TGAAAAGGACTCGTTACATCCA 57.389 40.909 0.00 0.00 34.73 3.41
3000 9492 7.795482 TTCTTCAAATGAAAAGGACTCGTTA 57.205 32.000 0.00 0.00 33.07 3.18
3027 9522 5.469421 CCACTTGATAGATGAGAAATCTGCC 59.531 44.000 0.00 0.00 0.00 4.85
3051 9546 6.036953 TGGTTTCACAATTCAAAAATGACAGC 59.963 34.615 0.00 0.00 0.00 4.40
3074 9569 4.701651 TGAGATTAACTGGCAATGAACTGG 59.298 41.667 0.00 0.00 0.00 4.00
3123 9625 2.969821 TGGGGCACTTAACAATCTGT 57.030 45.000 0.00 0.00 0.00 3.41
3324 9829 1.294659 GCGAGCAGGTGAGGTCTTTG 61.295 60.000 0.00 0.00 34.00 2.77
3411 9932 6.013725 GGGAAACTTTTGAATTAATGGAGGGT 60.014 38.462 0.00 0.00 0.00 4.34
3450 9972 0.991146 TGGATAGGCCTGCTGTTTGA 59.009 50.000 17.99 0.00 37.63 2.69
3507 10039 2.092429 TGGGAGAACTGAAGTGCTGTTT 60.092 45.455 0.00 0.00 38.57 2.83
3508 10040 1.490490 TGGGAGAACTGAAGTGCTGTT 59.510 47.619 0.00 0.00 40.78 3.16
3509 10041 1.131638 TGGGAGAACTGAAGTGCTGT 58.868 50.000 0.00 0.00 33.02 4.40
3510 10042 2.082231 CATGGGAGAACTGAAGTGCTG 58.918 52.381 0.00 0.00 33.02 4.41
3511 10043 1.701847 ACATGGGAGAACTGAAGTGCT 59.298 47.619 0.00 0.00 36.39 4.40
3515 10057 3.692257 AGACACATGGGAGAACTGAAG 57.308 47.619 0.00 0.00 0.00 3.02
3521 10063 4.277476 ACAAAACAAGACACATGGGAGAA 58.723 39.130 0.00 0.00 0.00 2.87
3556 10337 3.382083 ACCAACCAAAAGGAACACTCT 57.618 42.857 0.00 0.00 0.00 3.24
3588 10369 0.972134 ACAGAGCACAGAAGCTAGCA 59.028 50.000 18.83 0.00 46.75 3.49
3589 10370 2.949451 TACAGAGCACAGAAGCTAGC 57.051 50.000 6.62 6.62 46.75 3.42
3590 10371 3.122297 GCATACAGAGCACAGAAGCTAG 58.878 50.000 0.00 0.00 46.75 3.42
3602 10383 4.340666 AGGAGTACATCACAGCATACAGAG 59.659 45.833 0.00 0.00 0.00 3.35
3604 10385 4.366586 CAGGAGTACATCACAGCATACAG 58.633 47.826 0.00 0.00 0.00 2.74
3606 10387 3.384789 TCCAGGAGTACATCACAGCATAC 59.615 47.826 0.00 0.00 0.00 2.39
3633 10414 9.085645 AGTTATGACGGTACATGGAGATTATTA 57.914 33.333 0.00 0.00 0.00 0.98
3634 10415 7.872993 CAGTTATGACGGTACATGGAGATTATT 59.127 37.037 0.00 0.00 0.00 1.40
3635 10416 7.232737 TCAGTTATGACGGTACATGGAGATTAT 59.767 37.037 0.00 0.00 0.00 1.28
3675 10473 4.042271 ACCTCCACGGTAATCCAAAAAT 57.958 40.909 0.00 0.00 46.73 1.82
3687 10485 1.165270 GGACAAATCAACCTCCACGG 58.835 55.000 0.00 0.00 39.35 4.94
3688 10486 2.185004 AGGACAAATCAACCTCCACG 57.815 50.000 0.00 0.00 0.00 4.94
3808 11856 2.921069 GCAACAACAGCAGCTGAGAATG 60.921 50.000 29.70 21.16 35.18 2.67
3809 11857 1.268899 GCAACAACAGCAGCTGAGAAT 59.731 47.619 29.70 9.38 35.18 2.40
3810 11858 0.664761 GCAACAACAGCAGCTGAGAA 59.335 50.000 29.70 0.00 35.18 2.87
3811 11859 1.501337 CGCAACAACAGCAGCTGAGA 61.501 55.000 29.70 0.00 35.18 3.27
3812 11860 1.082300 CGCAACAACAGCAGCTGAG 60.082 57.895 29.70 21.35 35.18 3.35
3813 11861 2.545596 CCGCAACAACAGCAGCTGA 61.546 57.895 29.70 0.00 35.18 4.26
3814 11862 2.050714 CCGCAACAACAGCAGCTG 60.051 61.111 21.54 21.54 37.52 4.24
3815 11863 3.969802 GCCGCAACAACAGCAGCT 61.970 61.111 0.00 0.00 32.82 4.24
3816 11864 3.969802 AGCCGCAACAACAGCAGC 61.970 61.111 0.00 0.00 35.69 5.25
3817 11865 2.050714 CAGCCGCAACAACAGCAG 60.051 61.111 0.00 0.00 0.00 4.24
3818 11866 2.828095 ACAGCCGCAACAACAGCA 60.828 55.556 0.00 0.00 0.00 4.41
3819 11867 2.353839 CACAGCCGCAACAACAGC 60.354 61.111 0.00 0.00 0.00 4.40
3820 11868 0.179140 AAACACAGCCGCAACAACAG 60.179 50.000 0.00 0.00 0.00 3.16
3821 11869 0.457509 CAAACACAGCCGCAACAACA 60.458 50.000 0.00 0.00 0.00 3.33
3822 11870 1.751536 GCAAACACAGCCGCAACAAC 61.752 55.000 0.00 0.00 0.00 3.32
3823 11871 1.518133 GCAAACACAGCCGCAACAA 60.518 52.632 0.00 0.00 0.00 2.83
3824 11872 2.103934 GCAAACACAGCCGCAACA 59.896 55.556 0.00 0.00 0.00 3.33
3825 11873 1.945662 CTGCAAACACAGCCGCAAC 60.946 57.895 0.00 0.00 33.21 4.17
3826 11874 1.454572 ATCTGCAAACACAGCCGCAA 61.455 50.000 0.00 0.00 37.59 4.85
3827 11875 1.898094 ATCTGCAAACACAGCCGCA 60.898 52.632 0.00 0.00 37.59 5.69
3828 11876 1.443194 CATCTGCAAACACAGCCGC 60.443 57.895 0.00 0.00 37.59 6.53
3829 11877 0.311790 AACATCTGCAAACACAGCCG 59.688 50.000 0.00 0.00 37.59 5.52
3830 11878 1.610522 AGAACATCTGCAAACACAGCC 59.389 47.619 0.00 0.00 37.59 4.85
3831 11879 2.291465 TGAGAACATCTGCAAACACAGC 59.709 45.455 0.00 0.00 37.59 4.40
3832 11880 3.562973 ACTGAGAACATCTGCAAACACAG 59.437 43.478 0.00 0.00 39.12 3.66
3833 11881 3.544684 ACTGAGAACATCTGCAAACACA 58.455 40.909 0.00 0.00 0.00 3.72
3834 11882 4.285292 CAACTGAGAACATCTGCAAACAC 58.715 43.478 0.00 0.00 0.00 3.32
3835 11883 3.316029 CCAACTGAGAACATCTGCAAACA 59.684 43.478 0.00 0.00 0.00 2.83
3836 11884 3.565482 TCCAACTGAGAACATCTGCAAAC 59.435 43.478 0.00 0.00 0.00 2.93
3837 11885 3.819368 TCCAACTGAGAACATCTGCAAA 58.181 40.909 0.00 0.00 0.00 3.68
3838 11886 3.490439 TCCAACTGAGAACATCTGCAA 57.510 42.857 0.00 0.00 0.00 4.08
3839 11887 3.708403 ATCCAACTGAGAACATCTGCA 57.292 42.857 0.00 0.00 0.00 4.41
3840 11888 4.808364 GTCTATCCAACTGAGAACATCTGC 59.192 45.833 0.00 0.00 0.00 4.26
3841 11889 6.041511 CAGTCTATCCAACTGAGAACATCTG 58.958 44.000 0.00 0.00 45.64 2.90
3842 11890 5.954752 TCAGTCTATCCAACTGAGAACATCT 59.045 40.000 1.98 0.00 46.15 2.90
3843 11891 6.214191 TCAGTCTATCCAACTGAGAACATC 57.786 41.667 1.98 0.00 46.15 3.06
3850 11898 8.539117 TTCATAGATTCAGTCTATCCAACTGA 57.461 34.615 1.98 1.98 45.02 3.41
3851 11899 9.605275 TTTTCATAGATTCAGTCTATCCAACTG 57.395 33.333 0.00 0.00 45.02 3.16
3889 11937 6.976349 GTCACACCTTTCCGTTATTTCTTTTT 59.024 34.615 0.00 0.00 0.00 1.94
3890 11938 6.320418 AGTCACACCTTTCCGTTATTTCTTTT 59.680 34.615 0.00 0.00 0.00 2.27
3891 11939 5.826208 AGTCACACCTTTCCGTTATTTCTTT 59.174 36.000 0.00 0.00 0.00 2.52
3892 11940 5.374071 AGTCACACCTTTCCGTTATTTCTT 58.626 37.500 0.00 0.00 0.00 2.52
3893 11941 4.969484 AGTCACACCTTTCCGTTATTTCT 58.031 39.130 0.00 0.00 0.00 2.52
3894 11942 6.980051 ATAGTCACACCTTTCCGTTATTTC 57.020 37.500 0.00 0.00 0.00 2.17
3895 11943 7.166167 AGAATAGTCACACCTTTCCGTTATTT 58.834 34.615 0.00 0.00 0.00 1.40
3896 11944 6.708285 AGAATAGTCACACCTTTCCGTTATT 58.292 36.000 0.00 0.00 0.00 1.40
3897 11945 6.154706 AGAGAATAGTCACACCTTTCCGTTAT 59.845 38.462 0.00 0.00 0.00 1.89
3898 11946 5.479375 AGAGAATAGTCACACCTTTCCGTTA 59.521 40.000 0.00 0.00 0.00 3.18
3899 11947 4.283722 AGAGAATAGTCACACCTTTCCGTT 59.716 41.667 0.00 0.00 0.00 4.44
3900 11948 3.833070 AGAGAATAGTCACACCTTTCCGT 59.167 43.478 0.00 0.00 0.00 4.69
3901 11949 4.177026 CAGAGAATAGTCACACCTTTCCG 58.823 47.826 0.00 0.00 0.00 4.30
3902 11950 4.020128 ACCAGAGAATAGTCACACCTTTCC 60.020 45.833 0.00 0.00 0.00 3.13
3903 11951 4.932200 CACCAGAGAATAGTCACACCTTTC 59.068 45.833 0.00 0.00 0.00 2.62
3904 11952 4.348168 ACACCAGAGAATAGTCACACCTTT 59.652 41.667 0.00 0.00 0.00 3.11
3905 11953 3.904339 ACACCAGAGAATAGTCACACCTT 59.096 43.478 0.00 0.00 0.00 3.50
3906 11954 3.511477 ACACCAGAGAATAGTCACACCT 58.489 45.455 0.00 0.00 0.00 4.00
3907 11955 3.963428 ACACCAGAGAATAGTCACACC 57.037 47.619 0.00 0.00 0.00 4.16
3908 11956 5.646577 ACTACACCAGAGAATAGTCACAC 57.353 43.478 0.00 0.00 0.00 3.82
3909 11957 6.150641 GTGTACTACACCAGAGAATAGTCACA 59.849 42.308 7.99 0.00 43.05 3.58
3910 11958 6.553524 GTGTACTACACCAGAGAATAGTCAC 58.446 44.000 7.99 0.00 43.05 3.67
3911 11959 6.754702 GTGTACTACACCAGAGAATAGTCA 57.245 41.667 7.99 0.00 43.05 3.41
3925 11973 1.687660 TGCAAACTCGGGTGTACTACA 59.312 47.619 0.00 0.00 0.00 2.74
3926 11974 2.443887 TGCAAACTCGGGTGTACTAC 57.556 50.000 0.00 0.00 0.00 2.73
3927 11975 3.472283 TTTGCAAACTCGGGTGTACTA 57.528 42.857 8.05 0.00 0.00 1.82
3928 11976 2.335316 TTTGCAAACTCGGGTGTACT 57.665 45.000 8.05 0.00 0.00 2.73
3929 11977 3.423996 TTTTTGCAAACTCGGGTGTAC 57.576 42.857 12.39 0.00 0.00 2.90
3981 12029 9.768662 AGTTTGCTATCACAAAATTTCAGATTT 57.231 25.926 0.00 0.00 40.99 2.17
3982 12030 9.768662 AAGTTTGCTATCACAAAATTTCAGATT 57.231 25.926 0.00 0.00 43.11 2.40
3992 12040 9.979578 ACATTTGATAAAGTTTGCTATCACAAA 57.020 25.926 0.00 0.00 34.93 2.83
3993 12041 9.979578 AACATTTGATAAAGTTTGCTATCACAA 57.020 25.926 0.00 0.00 34.93 3.33
3994 12042 9.979578 AAACATTTGATAAAGTTTGCTATCACA 57.020 25.926 0.00 0.00 34.93 3.58
3996 12044 9.421806 CCAAACATTTGATAAAGTTTGCTATCA 57.578 29.630 5.91 0.00 45.65 2.15
3997 12045 8.872845 CCCAAACATTTGATAAAGTTTGCTATC 58.127 33.333 5.91 0.00 45.65 2.08
3998 12046 7.334171 GCCCAAACATTTGATAAAGTTTGCTAT 59.666 33.333 5.91 0.00 45.65 2.97
3999 12047 6.648725 GCCCAAACATTTGATAAAGTTTGCTA 59.351 34.615 5.91 0.00 45.65 3.49
4000 12048 5.469760 GCCCAAACATTTGATAAAGTTTGCT 59.530 36.000 5.91 0.00 45.65 3.91
4001 12049 5.469760 AGCCCAAACATTTGATAAAGTTTGC 59.530 36.000 5.91 2.30 45.65 3.68
4002 12050 7.442062 AGAAGCCCAAACATTTGATAAAGTTTG 59.558 33.333 5.91 9.27 46.23 2.93
4003 12051 7.508687 AGAAGCCCAAACATTTGATAAAGTTT 58.491 30.769 5.91 0.00 40.55 2.66
4004 12052 7.066307 AGAAGCCCAAACATTTGATAAAGTT 57.934 32.000 5.91 0.00 40.55 2.66
4005 12053 6.670695 AGAAGCCCAAACATTTGATAAAGT 57.329 33.333 5.91 0.00 40.55 2.66
4006 12054 6.128472 GCAAGAAGCCCAAACATTTGATAAAG 60.128 38.462 5.91 0.00 37.56 1.85
4007 12055 5.700373 GCAAGAAGCCCAAACATTTGATAAA 59.300 36.000 5.91 0.00 37.56 1.40
4008 12056 5.221601 TGCAAGAAGCCCAAACATTTGATAA 60.222 36.000 5.91 0.00 44.83 1.75
4009 12057 4.282957 TGCAAGAAGCCCAAACATTTGATA 59.717 37.500 5.91 0.00 44.83 2.15
4010 12058 3.071312 TGCAAGAAGCCCAAACATTTGAT 59.929 39.130 5.91 0.00 44.83 2.57
4011 12059 2.433604 TGCAAGAAGCCCAAACATTTGA 59.566 40.909 5.91 0.00 44.83 2.69
4012 12060 2.836262 TGCAAGAAGCCCAAACATTTG 58.164 42.857 0.00 0.00 44.83 2.32
4013 12061 3.557228 TTGCAAGAAGCCCAAACATTT 57.443 38.095 0.00 0.00 44.83 2.32
4014 12062 3.557228 TTTGCAAGAAGCCCAAACATT 57.443 38.095 0.00 0.00 44.83 2.71
4015 12063 3.557228 TTTTGCAAGAAGCCCAAACAT 57.443 38.095 0.00 0.00 44.83 2.71
4016 12064 3.557228 ATTTTGCAAGAAGCCCAAACA 57.443 38.095 0.00 0.00 44.83 2.83
4017 12065 4.335037 TGAAATTTTGCAAGAAGCCCAAAC 59.665 37.500 0.00 0.00 44.83 2.93
4018 12066 4.521146 TGAAATTTTGCAAGAAGCCCAAA 58.479 34.783 0.00 0.00 44.83 3.28
4019 12067 4.128643 CTGAAATTTTGCAAGAAGCCCAA 58.871 39.130 0.00 0.00 44.83 4.12
4020 12068 3.731089 CTGAAATTTTGCAAGAAGCCCA 58.269 40.909 0.00 0.00 44.83 5.36
4021 12069 2.481568 GCTGAAATTTTGCAAGAAGCCC 59.518 45.455 0.00 0.00 44.83 5.19
4022 12070 2.481568 GGCTGAAATTTTGCAAGAAGCC 59.518 45.455 12.98 12.98 44.83 4.35
4023 12071 3.132925 TGGCTGAAATTTTGCAAGAAGC 58.867 40.909 15.61 0.79 45.96 3.86
4024 12072 5.738118 TTTGGCTGAAATTTTGCAAGAAG 57.262 34.783 15.61 0.00 0.00 2.85
4025 12073 6.150809 ACTTTTTGGCTGAAATTTTGCAAGAA 59.849 30.769 15.61 0.00 0.00 2.52
4026 12074 5.647225 ACTTTTTGGCTGAAATTTTGCAAGA 59.353 32.000 15.61 0.00 0.00 3.02
4027 12075 5.882553 ACTTTTTGGCTGAAATTTTGCAAG 58.117 33.333 15.61 12.78 0.00 4.01
4028 12076 5.893897 ACTTTTTGGCTGAAATTTTGCAA 57.106 30.435 15.61 0.00 0.00 4.08
4029 12077 5.877012 TGTACTTTTTGGCTGAAATTTTGCA 59.123 32.000 15.61 0.00 0.00 4.08
4030 12078 6.037062 AGTGTACTTTTTGGCTGAAATTTTGC 59.963 34.615 8.13 8.13 0.00 3.68
4031 12079 7.538303 AGTGTACTTTTTGGCTGAAATTTTG 57.462 32.000 0.00 0.00 0.00 2.44
4032 12080 7.821846 TGAAGTGTACTTTTTGGCTGAAATTTT 59.178 29.630 0.00 0.00 36.11 1.82
4033 12081 7.327214 TGAAGTGTACTTTTTGGCTGAAATTT 58.673 30.769 0.00 0.00 36.11 1.82
4034 12082 6.872920 TGAAGTGTACTTTTTGGCTGAAATT 58.127 32.000 0.00 0.00 36.11 1.82
4035 12083 6.321181 TCTGAAGTGTACTTTTTGGCTGAAAT 59.679 34.615 0.00 0.00 36.11 2.17
4036 12084 5.650266 TCTGAAGTGTACTTTTTGGCTGAAA 59.350 36.000 0.00 0.00 36.11 2.69
4037 12085 5.189928 TCTGAAGTGTACTTTTTGGCTGAA 58.810 37.500 0.00 0.00 36.11 3.02
4038 12086 4.776349 TCTGAAGTGTACTTTTTGGCTGA 58.224 39.130 0.00 0.00 36.11 4.26
4039 12087 5.499139 TTCTGAAGTGTACTTTTTGGCTG 57.501 39.130 0.00 0.00 36.11 4.85
4040 12088 6.715347 ATTTCTGAAGTGTACTTTTTGGCT 57.285 33.333 0.00 0.00 36.11 4.75
4041 12089 7.770801 AAATTTCTGAAGTGTACTTTTTGGC 57.229 32.000 0.00 0.00 36.11 4.52
4048 12096 8.926710 CGTGAAGATAAATTTCTGAAGTGTACT 58.073 33.333 0.00 0.00 0.00 2.73
4049 12097 8.169268 CCGTGAAGATAAATTTCTGAAGTGTAC 58.831 37.037 0.00 0.00 0.00 2.90
4050 12098 7.333423 CCCGTGAAGATAAATTTCTGAAGTGTA 59.667 37.037 0.00 0.00 0.00 2.90
4051 12099 6.149474 CCCGTGAAGATAAATTTCTGAAGTGT 59.851 38.462 0.00 0.00 0.00 3.55
4052 12100 6.371548 TCCCGTGAAGATAAATTTCTGAAGTG 59.628 38.462 0.00 0.00 0.00 3.16
4053 12101 6.472887 TCCCGTGAAGATAAATTTCTGAAGT 58.527 36.000 0.00 0.00 0.00 3.01
4054 12102 6.985188 TCCCGTGAAGATAAATTTCTGAAG 57.015 37.500 0.00 0.00 0.00 3.02
4055 12103 7.338710 AGATCCCGTGAAGATAAATTTCTGAA 58.661 34.615 0.00 0.00 0.00 3.02
4056 12104 6.889198 AGATCCCGTGAAGATAAATTTCTGA 58.111 36.000 0.00 0.00 0.00 3.27
4057 12105 7.280876 TCAAGATCCCGTGAAGATAAATTTCTG 59.719 37.037 0.00 0.00 0.00 3.02
4058 12106 7.338710 TCAAGATCCCGTGAAGATAAATTTCT 58.661 34.615 0.00 0.00 0.00 2.52
4059 12107 7.553881 TCAAGATCCCGTGAAGATAAATTTC 57.446 36.000 0.00 0.00 0.00 2.17
4072 12120 1.270907 ACTTCTGCTCAAGATCCCGT 58.729 50.000 2.61 0.00 33.93 5.28
4089 12137 3.090037 AGTACTGCACCGTATCTGAACT 58.910 45.455 0.00 0.00 0.00 3.01
4096 12144 1.825474 AGCTTCAGTACTGCACCGTAT 59.175 47.619 18.45 0.00 0.00 3.06
4100 12148 0.243907 TCGAGCTTCAGTACTGCACC 59.756 55.000 18.45 8.03 0.00 5.01
4103 12151 1.623359 CAGTCGAGCTTCAGTACTGC 58.377 55.000 18.45 6.79 32.02 4.40
4140 12188 6.448207 TGTCACTCAGAGAGAATCATACTG 57.552 41.667 3.79 0.00 37.82 2.74
4156 12204 4.033990 TCGTGCTAATCTGATGTCACTC 57.966 45.455 12.26 0.00 0.00 3.51
4161 12209 5.237815 TGAAAGTTCGTGCTAATCTGATGT 58.762 37.500 0.00 0.00 0.00 3.06
4168 12216 7.648142 TCTTGAAAATGAAAGTTCGTGCTAAT 58.352 30.769 0.00 0.00 0.00 1.73
4175 12223 5.108103 GCAGCTTCTTGAAAATGAAAGTTCG 60.108 40.000 0.00 0.00 0.00 3.95
4182 12230 4.084287 AGATGGCAGCTTCTTGAAAATGA 58.916 39.130 0.00 0.00 0.00 2.57
4183 12231 4.451629 AGATGGCAGCTTCTTGAAAATG 57.548 40.909 0.00 0.00 0.00 2.32
4184 12232 5.125097 CAGTAGATGGCAGCTTCTTGAAAAT 59.875 40.000 11.89 0.00 0.00 1.82
4188 12236 2.833943 TCAGTAGATGGCAGCTTCTTGA 59.166 45.455 11.89 9.87 0.00 3.02
4195 12243 1.208052 TCAGGTTCAGTAGATGGCAGC 59.792 52.381 0.00 0.00 0.00 5.25
4196 12244 3.616956 TTCAGGTTCAGTAGATGGCAG 57.383 47.619 0.00 0.00 0.00 4.85
4197 12245 3.327757 AGTTTCAGGTTCAGTAGATGGCA 59.672 43.478 0.00 0.00 0.00 4.92
4198 12246 3.686726 CAGTTTCAGGTTCAGTAGATGGC 59.313 47.826 0.00 0.00 0.00 4.40
4199 12247 5.152623 TCAGTTTCAGGTTCAGTAGATGG 57.847 43.478 0.00 0.00 0.00 3.51
4200 12248 5.991606 TGTTCAGTTTCAGGTTCAGTAGATG 59.008 40.000 0.00 0.00 0.00 2.90
4202 12250 5.607939 TGTTCAGTTTCAGGTTCAGTAGA 57.392 39.130 0.00 0.00 0.00 2.59
4203 12251 5.760253 ACATGTTCAGTTTCAGGTTCAGTAG 59.240 40.000 0.00 0.00 0.00 2.57
4204 12252 5.527214 CACATGTTCAGTTTCAGGTTCAGTA 59.473 40.000 0.00 0.00 0.00 2.74
4206 12254 4.336433 ACACATGTTCAGTTTCAGGTTCAG 59.664 41.667 0.00 0.00 0.00 3.02
4207 12255 4.096231 CACACATGTTCAGTTTCAGGTTCA 59.904 41.667 0.00 0.00 0.00 3.18
4208 12256 4.601019 CACACATGTTCAGTTTCAGGTTC 58.399 43.478 0.00 0.00 0.00 3.62
4209 12257 3.181487 GCACACATGTTCAGTTTCAGGTT 60.181 43.478 0.00 0.00 0.00 3.50
4210 12258 2.358898 GCACACATGTTCAGTTTCAGGT 59.641 45.455 0.00 0.00 0.00 4.00
4211 12259 2.287788 GGCACACATGTTCAGTTTCAGG 60.288 50.000 0.00 0.00 0.00 3.86
4212 12260 2.602933 CGGCACACATGTTCAGTTTCAG 60.603 50.000 0.00 0.00 0.00 3.02
4220 12273 2.412847 GCTTTCTACGGCACACATGTTC 60.413 50.000 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.