Multiple sequence alignment - TraesCS7A01G568200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G568200 chr7A 100.000 3362 0 0 1 3362 736339694 736343055 0.000000e+00 6209.0
1 TraesCS7A01G568200 chr7B 84.666 2452 303 25 952 3361 744260859 744258439 0.000000e+00 2377.0
2 TraesCS7A01G568200 chr7B 83.970 2408 314 31 997 3361 743738189 743740567 0.000000e+00 2242.0
3 TraesCS7A01G568200 chr7B 89.895 1336 126 6 943 2272 743814887 743816219 0.000000e+00 1711.0
4 TraesCS7A01G568200 chr7B 87.709 1318 150 8 950 2265 744110662 744109355 0.000000e+00 1526.0
5 TraesCS7A01G568200 chr7B 83.993 1112 155 13 2266 3361 743816242 743817346 0.000000e+00 1046.0
6 TraesCS7A01G568200 chr7B 80.477 1383 206 27 2021 3361 746738699 746740059 0.000000e+00 1000.0
7 TraesCS7A01G568200 chr7B 87.176 850 103 6 954 1800 746531337 746530491 0.000000e+00 961.0
8 TraesCS7A01G568200 chr7B 89.101 734 74 6 1533 2265 744348053 744348781 0.000000e+00 907.0
9 TraesCS7A01G568200 chr7B 85.865 474 58 6 1798 2268 746528366 746527899 2.330000e-136 496.0
10 TraesCS7A01G568200 chr7B 81.938 609 67 21 3 573 744262257 744261654 3.040000e-130 475.0
11 TraesCS7A01G568200 chr7B 82.114 615 53 26 1 573 744111674 744111075 1.090000e-129 473.0
12 TraesCS7A01G568200 chr7B 83.258 442 56 4 987 1428 744347627 744348050 1.130000e-104 390.0
13 TraesCS7A01G568200 chr7B 81.818 429 49 14 157 570 743813832 743814246 1.930000e-87 333.0
14 TraesCS7A01G568200 chr7B 80.155 388 59 14 569 952 743737743 743738116 1.190000e-69 274.0
15 TraesCS7A01G568200 chr7B 89.655 87 2 4 3 86 743805822 743805904 1.650000e-18 104.0
16 TraesCS7A01G568200 chr7B 91.489 47 4 0 747 793 744347377 744347423 7.790000e-07 65.8
17 TraesCS7A01G568200 chr1A 76.030 1214 276 15 1036 2243 551463631 551462427 1.710000e-172 616.0
18 TraesCS7A01G568200 chr4A 75.701 1177 254 28 1057 2220 736884022 736885179 8.150000e-156 560.0
19 TraesCS7A01G568200 chr4A 74.664 1117 246 28 2268 3361 735021587 735022689 8.500000e-126 460.0
20 TraesCS7A01G568200 chr4A 73.801 1126 246 31 2266 3360 736121025 736122132 1.880000e-107 399.0
21 TraesCS7A01G568200 chr4A 74.183 949 207 29 2266 3192 734877512 734878444 8.870000e-96 361.0
22 TraesCS7A01G568200 chr4A 76.579 649 135 14 2274 2912 736412002 736411361 1.160000e-89 340.0
23 TraesCS7A01G568200 chr4A 72.632 1140 243 38 2266 3361 736148581 736149695 2.520000e-81 313.0
24 TraesCS7A01G568200 chr4A 74.693 652 152 11 2266 2912 735561402 735560759 9.190000e-71 278.0
25 TraesCS7A01G568200 chr4A 74.294 708 159 12 2266 2966 735690356 735691047 9.190000e-71 278.0
26 TraesCS7A01G568200 chr4A 74.924 654 129 26 2266 2912 734586442 734587067 1.990000e-67 267.0
27 TraesCS7A01G568200 chr4A 76.139 373 78 8 2997 3359 735769176 735769547 5.730000e-43 185.0
28 TraesCS7A01G568200 chr4A 75.603 373 82 4 2996 3359 736886029 736886401 3.450000e-40 176.0
29 TraesCS7A01G568200 chr3B 74.336 1243 279 33 1036 2267 559886855 559888068 3.010000e-135 492.0
30 TraesCS7A01G568200 chr5B 93.114 334 13 2 3039 3362 604164978 604165311 6.520000e-132 481.0
31 TraesCS7A01G568200 chr1B 76.000 725 144 20 2267 2982 631220656 631219953 6.900000e-92 348.0
32 TraesCS7A01G568200 chr7D 72.679 1131 244 37 2266 3359 5665544 5664442 1.950000e-82 316.0
33 TraesCS7A01G568200 chr7D 74.893 701 145 23 2274 2966 5648073 5647396 1.180000e-74 291.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G568200 chr7A 736339694 736343055 3361 False 6209.000000 6209 100.000000 1 3362 1 chr7A.!!$F1 3361
1 TraesCS7A01G568200 chr7B 744258439 744262257 3818 True 1426.000000 2377 83.302000 3 3361 2 chr7B.!!$R2 3358
2 TraesCS7A01G568200 chr7B 743737743 743740567 2824 False 1258.000000 2242 82.062500 569 3361 2 chr7B.!!$F3 2792
3 TraesCS7A01G568200 chr7B 743813832 743817346 3514 False 1030.000000 1711 85.235333 157 3361 3 chr7B.!!$F4 3204
4 TraesCS7A01G568200 chr7B 746738699 746740059 1360 False 1000.000000 1000 80.477000 2021 3361 1 chr7B.!!$F2 1340
5 TraesCS7A01G568200 chr7B 744109355 744111674 2319 True 999.500000 1526 84.911500 1 2265 2 chr7B.!!$R1 2264
6 TraesCS7A01G568200 chr7B 746527899 746531337 3438 True 728.500000 961 86.520500 954 2268 2 chr7B.!!$R3 1314
7 TraesCS7A01G568200 chr7B 744347377 744348781 1404 False 454.266667 907 87.949333 747 2265 3 chr7B.!!$F5 1518
8 TraesCS7A01G568200 chr1A 551462427 551463631 1204 True 616.000000 616 76.030000 1036 2243 1 chr1A.!!$R1 1207
9 TraesCS7A01G568200 chr4A 735021587 735022689 1102 False 460.000000 460 74.664000 2268 3361 1 chr4A.!!$F3 1093
10 TraesCS7A01G568200 chr4A 736121025 736122132 1107 False 399.000000 399 73.801000 2266 3360 1 chr4A.!!$F6 1094
11 TraesCS7A01G568200 chr4A 736884022 736886401 2379 False 368.000000 560 75.652000 1057 3359 2 chr4A.!!$F8 2302
12 TraesCS7A01G568200 chr4A 734877512 734878444 932 False 361.000000 361 74.183000 2266 3192 1 chr4A.!!$F2 926
13 TraesCS7A01G568200 chr4A 736411361 736412002 641 True 340.000000 340 76.579000 2274 2912 1 chr4A.!!$R2 638
14 TraesCS7A01G568200 chr4A 736148581 736149695 1114 False 313.000000 313 72.632000 2266 3361 1 chr4A.!!$F7 1095
15 TraesCS7A01G568200 chr4A 735560759 735561402 643 True 278.000000 278 74.693000 2266 2912 1 chr4A.!!$R1 646
16 TraesCS7A01G568200 chr4A 735690356 735691047 691 False 278.000000 278 74.294000 2266 2966 1 chr4A.!!$F4 700
17 TraesCS7A01G568200 chr4A 734586442 734587067 625 False 267.000000 267 74.924000 2266 2912 1 chr4A.!!$F1 646
18 TraesCS7A01G568200 chr3B 559886855 559888068 1213 False 492.000000 492 74.336000 1036 2267 1 chr3B.!!$F1 1231
19 TraesCS7A01G568200 chr1B 631219953 631220656 703 True 348.000000 348 76.000000 2267 2982 1 chr1B.!!$R1 715
20 TraesCS7A01G568200 chr7D 5664442 5665544 1102 True 316.000000 316 72.679000 2266 3359 1 chr7D.!!$R2 1093
21 TraesCS7A01G568200 chr7D 5647396 5648073 677 True 291.000000 291 74.893000 2274 2966 1 chr7D.!!$R1 692

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
658 738 0.034767 CTCCTGCAGGCTTTCCATCA 60.035 55.0 28.91 6.34 34.44 3.07 F
855 1324 0.104120 GACCCAACAACTGCCCAAAC 59.896 55.0 0.00 0.00 0.00 2.93 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1771 2334 0.036388 AACCGTGTATGGCCACTGAG 60.036 55.0 8.16 0.00 33.07 3.35 R
2737 5523 0.808125 TCAAACTTTGCAGCACGTGT 59.192 45.0 18.38 0.68 0.00 4.49 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.882557 TTAATGCACATCATATTACCCATCAT 57.117 30.769 0.00 0.00 34.33 2.45
26 27 9.972106 TTAATGCACATCATATTACCCATCATA 57.028 29.630 0.00 0.00 34.33 2.15
28 29 9.483489 AATGCACATCATATTACCCATCATATT 57.517 29.630 0.00 0.00 34.33 1.28
29 30 8.283699 TGCACATCATATTACCCATCATATTG 57.716 34.615 0.00 0.00 0.00 1.90
31 32 8.742777 GCACATCATATTACCCATCATATTGTT 58.257 33.333 0.00 0.00 0.00 2.83
42 43 4.741185 CCATCATATTGTTCACAATTGCCG 59.259 41.667 10.38 0.00 43.48 5.69
113 118 4.593206 TGTCATACCTTTCAGAACTGGAGT 59.407 41.667 8.07 0.00 0.00 3.85
134 141 3.128242 GTGATGCTTCCTGGAAATCACAG 59.872 47.826 31.06 14.93 44.15 3.66
139 147 1.289160 TCCTGGAAATCACAGAGGGG 58.711 55.000 0.00 0.00 38.20 4.79
146 154 0.326264 AATCACAGAGGGGCAGTGAC 59.674 55.000 0.00 0.00 44.37 3.67
163 179 5.689819 CAGTGACGGTAATGGAAAAGAAAG 58.310 41.667 0.00 0.00 0.00 2.62
167 183 6.856426 GTGACGGTAATGGAAAAGAAAGAAAG 59.144 38.462 0.00 0.00 0.00 2.62
181 197 4.518590 AGAAAGAAAGAAAGAGAAGCAGGC 59.481 41.667 0.00 0.00 0.00 4.85
183 199 3.145286 AGAAAGAAAGAGAAGCAGGCAC 58.855 45.455 0.00 0.00 0.00 5.01
215 231 9.218440 CCTACCATTTCATTGTTAAAAAGCATT 57.782 29.630 0.00 0.00 0.00 3.56
243 259 5.450550 GGATGGGCACTTGCTTCTTATTAAC 60.451 44.000 0.38 0.00 41.70 2.01
280 296 7.132213 CGTCCGCTTCATGTATTTTAATCATT 58.868 34.615 0.00 0.00 0.00 2.57
391 418 1.566231 GGATCATCTTGTTGACCCCCT 59.434 52.381 0.00 0.00 0.00 4.79
393 420 2.584835 TCATCTTGTTGACCCCCTTG 57.415 50.000 0.00 0.00 0.00 3.61
395 422 1.075374 CATCTTGTTGACCCCCTTGGA 59.925 52.381 0.00 0.00 38.00 3.53
396 423 1.455822 TCTTGTTGACCCCCTTGGAT 58.544 50.000 0.00 0.00 38.00 3.41
401 430 1.913419 GTTGACCCCCTTGGATAGTCA 59.087 52.381 0.00 0.00 38.00 3.41
403 432 2.858644 TGACCCCCTTGGATAGTCATT 58.141 47.619 0.00 0.00 38.00 2.57
420 449 9.615295 GATAGTCATTCGTCCTATTTCTCTTAC 57.385 37.037 0.00 0.00 0.00 2.34
451 480 1.830408 CCTCCGATTCGCCTCTCCT 60.830 63.158 0.00 0.00 0.00 3.69
459 488 1.485124 TTCGCCTCTCCTGCAATCTA 58.515 50.000 0.00 0.00 0.00 1.98
474 503 4.218312 GCAATCTACCATTCCCCTTCATT 58.782 43.478 0.00 0.00 0.00 2.57
478 507 0.684153 ACCATTCCCCTTCATTGCCG 60.684 55.000 0.00 0.00 0.00 5.69
481 510 0.614415 ATTCCCCTTCATTGCCGCAA 60.614 50.000 8.55 8.55 0.00 4.85
482 511 0.614415 TTCCCCTTCATTGCCGCAAT 60.614 50.000 13.00 13.00 34.04 3.56
487 516 1.673626 CCTTCATTGCCGCAATTGCTT 60.674 47.619 26.86 5.04 39.32 3.91
509 550 3.106827 TCTACCTTCATCATCCTGCACA 58.893 45.455 0.00 0.00 0.00 4.57
529 570 5.417811 CACATCTTCATCTGTGTAAGCTCT 58.582 41.667 0.00 0.00 38.33 4.09
532 573 5.574891 TCTTCATCTGTGTAAGCTCTCTC 57.425 43.478 0.00 0.00 0.00 3.20
539 580 2.028876 GTGTAAGCTCTCTCCCCTCTC 58.971 57.143 0.00 0.00 0.00 3.20
554 595 4.412199 TCCCCTCTCTTTTCTTTCTTGTCA 59.588 41.667 0.00 0.00 0.00 3.58
555 596 4.759183 CCCCTCTCTTTTCTTTCTTGTCAG 59.241 45.833 0.00 0.00 0.00 3.51
570 611 6.465439 TCTTGTCAGTGTTAGTCTTCTTCA 57.535 37.500 0.00 0.00 0.00 3.02
577 657 6.040955 TCAGTGTTAGTCTTCTTCATCTGTGT 59.959 38.462 0.00 0.00 0.00 3.72
581 661 6.209589 TGTTAGTCTTCTTCATCTGTGTAGCT 59.790 38.462 0.00 0.00 0.00 3.32
591 671 3.944055 TCTGTGTAGCTCCTCTGTTTC 57.056 47.619 0.00 0.00 0.00 2.78
593 673 2.564947 CTGTGTAGCTCCTCTGTTTCCT 59.435 50.000 0.00 0.00 0.00 3.36
596 676 4.402793 TGTGTAGCTCCTCTGTTTCCTATC 59.597 45.833 0.00 0.00 0.00 2.08
601 681 4.534103 AGCTCCTCTGTTTCCTATCTGTTT 59.466 41.667 0.00 0.00 0.00 2.83
603 683 5.707764 GCTCCTCTGTTTCCTATCTGTTTTT 59.292 40.000 0.00 0.00 0.00 1.94
623 703 4.389890 TTTGCTGCAGTTCACTGATTTT 57.610 36.364 16.64 0.00 46.59 1.82
635 715 6.039829 AGTTCACTGATTTTTCTCCCTGTTTC 59.960 38.462 0.00 0.00 0.00 2.78
637 717 3.821033 ACTGATTTTTCTCCCTGTTTCCG 59.179 43.478 0.00 0.00 0.00 4.30
658 738 0.034767 CTCCTGCAGGCTTTCCATCA 60.035 55.000 28.91 6.34 34.44 3.07
659 739 0.322816 TCCTGCAGGCTTTCCATCAC 60.323 55.000 28.91 0.00 34.44 3.06
660 740 0.323178 CCTGCAGGCTTTCCATCACT 60.323 55.000 22.33 0.00 33.74 3.41
661 741 0.809385 CTGCAGGCTTTCCATCACTG 59.191 55.000 5.57 0.00 33.74 3.66
662 742 0.401356 TGCAGGCTTTCCATCACTGA 59.599 50.000 0.00 0.00 33.74 3.41
663 743 1.005097 TGCAGGCTTTCCATCACTGAT 59.995 47.619 0.00 0.00 33.74 2.90
667 747 3.094572 AGGCTTTCCATCACTGATTTGG 58.905 45.455 0.00 0.00 33.74 3.28
693 792 2.968574 CCAGAGGCCATCTTTAGAGCTA 59.031 50.000 5.01 0.00 35.47 3.32
695 794 3.006752 CAGAGGCCATCTTTAGAGCTAGG 59.993 52.174 5.01 0.00 35.47 3.02
707 1176 2.125106 GCTAGGTGGCTCCCGTTG 60.125 66.667 1.14 0.00 36.75 4.10
708 1177 2.656069 GCTAGGTGGCTCCCGTTGA 61.656 63.158 1.14 0.00 36.75 3.18
719 1188 3.270877 GCTCCCGTTGACTATTGTTCAT 58.729 45.455 0.00 0.00 0.00 2.57
724 1193 6.703319 TCCCGTTGACTATTGTTCATTTCTA 58.297 36.000 0.00 0.00 0.00 2.10
737 1206 5.637810 TGTTCATTTCTACGTGTTCATCCTC 59.362 40.000 0.00 0.00 0.00 3.71
783 1252 4.897076 CCATCCATTCCATCTCATTTTCCA 59.103 41.667 0.00 0.00 0.00 3.53
788 1257 4.934797 TTCCATCTCATTTTCCACTCCT 57.065 40.909 0.00 0.00 0.00 3.69
800 1269 8.424918 TCATTTTCCACTCCTGATATACTTCTC 58.575 37.037 0.00 0.00 0.00 2.87
803 1272 3.508012 CCACTCCTGATATACTTCTCCGG 59.492 52.174 0.00 0.00 0.00 5.14
819 1288 7.792032 ACTTCTCCGGATCATTTTTCATACTA 58.208 34.615 3.57 0.00 0.00 1.82
820 1289 7.928706 ACTTCTCCGGATCATTTTTCATACTAG 59.071 37.037 3.57 0.00 0.00 2.57
822 1291 7.210174 TCTCCGGATCATTTTTCATACTAGTG 58.790 38.462 3.57 0.00 0.00 2.74
825 1294 7.872993 TCCGGATCATTTTTCATACTAGTGATC 59.127 37.037 0.00 5.71 39.60 2.92
844 1313 6.329986 AGTGATCCATAATCTATGACCCAACA 59.670 38.462 0.00 0.00 38.45 3.33
847 1316 6.575244 TCCATAATCTATGACCCAACAACT 57.425 37.500 0.00 0.00 38.45 3.16
848 1317 6.356556 TCCATAATCTATGACCCAACAACTG 58.643 40.000 0.00 0.00 38.45 3.16
855 1324 0.104120 GACCCAACAACTGCCCAAAC 59.896 55.000 0.00 0.00 0.00 2.93
860 1329 2.102925 CCAACAACTGCCCAAACAGAAT 59.897 45.455 0.00 0.00 40.25 2.40
897 1373 6.770785 ACACACAAATCTGCCTTTAGAGTAAA 59.229 34.615 0.00 0.00 0.00 2.01
923 1399 3.760684 ACACATTTCCCATCTTTGCTCTC 59.239 43.478 0.00 0.00 0.00 3.20
932 1408 7.379059 TCCCATCTTTGCTCTCTTATATTCA 57.621 36.000 0.00 0.00 0.00 2.57
1135 1677 2.028658 GTGAGTGAGCTCCATGAACTGA 60.029 50.000 12.15 0.00 40.95 3.41
1206 1748 3.355077 CCCACACAGGCCAATGTTA 57.645 52.632 5.01 0.00 35.39 2.41
1234 1776 0.250467 GGTCCAGCAGCTCAAAGACA 60.250 55.000 11.58 0.00 0.00 3.41
1239 1781 1.952296 CAGCAGCTCAAAGACACCTTT 59.048 47.619 0.00 0.00 42.98 3.11
1289 1831 4.256110 CATGAGTACAACATCCTCAAGCA 58.744 43.478 0.00 0.00 38.61 3.91
1328 1870 7.056635 GGGAAGGATTCTTTGATAGAACATGA 58.943 38.462 0.00 0.00 45.33 3.07
1392 1937 1.376424 CAGGCTGTCCAATCTGCGT 60.376 57.895 6.28 0.00 34.02 5.24
1428 1973 2.028130 CTACTCGACCAGCTGAAGGAT 58.972 52.381 17.39 0.00 0.00 3.24
1458 2003 0.114954 TCCTGGCAAAAGCCAAGGAT 59.885 50.000 17.76 0.00 39.60 3.24
1489 2034 0.898320 TCTCTGCTTACCTGCTGGTC 59.102 55.000 19.71 5.77 44.78 4.02
1490 2035 0.459237 CTCTGCTTACCTGCTGGTCG 60.459 60.000 19.71 12.49 44.78 4.79
1521 2066 2.202690 TTCGCAGTACCGGCATCG 60.203 61.111 0.00 0.00 0.00 3.84
1771 2334 1.853646 GCATCTCGCGCAAACTTGATC 60.854 52.381 8.75 0.00 0.00 2.92
1906 4596 3.926616 AGATACCTTCTTGTGTTGGACG 58.073 45.455 0.00 0.00 0.00 4.79
1907 4597 3.576982 AGATACCTTCTTGTGTTGGACGA 59.423 43.478 0.00 0.00 0.00 4.20
1908 4598 1.949465 ACCTTCTTGTGTTGGACGAC 58.051 50.000 0.00 0.00 0.00 4.34
2083 4776 5.923733 AGACATGGAAGATACCGATATCC 57.076 43.478 0.00 0.00 38.43 2.59
2101 4794 2.889512 TCCTAGCACTCTTCAAGGACA 58.110 47.619 0.00 0.00 31.41 4.02
2120 4813 1.342174 CAATGCCTTTTCTGGTGCAGT 59.658 47.619 0.00 0.00 37.12 4.40
2177 4870 4.440880 ACTATTGCAGAGAAGCTTGCTAG 58.559 43.478 2.10 3.34 34.99 3.42
2261 4954 1.648116 AAGGCTGCATGGGAAAATGT 58.352 45.000 0.50 0.00 0.00 2.71
2355 5084 6.715347 ATATCCAAAAGGCCACTTGTATTC 57.285 37.500 5.01 0.00 36.93 1.75
2356 5085 3.838565 TCCAAAAGGCCACTTGTATTCA 58.161 40.909 5.01 0.00 36.93 2.57
2376 5105 6.385649 TTCAATTAAGGAGTTGGTTCACAC 57.614 37.500 0.00 0.00 0.00 3.82
2421 5150 1.974265 TCGCCCAATGTGAACAAGAA 58.026 45.000 0.00 0.00 0.00 2.52
2423 5152 2.034053 TCGCCCAATGTGAACAAGAAAC 59.966 45.455 0.00 0.00 0.00 2.78
2442 5178 2.422746 ACTGGAAGATATTGGGAGGGG 58.577 52.381 0.00 0.00 37.43 4.79
2445 5181 3.205282 CTGGAAGATATTGGGAGGGGTTT 59.795 47.826 0.00 0.00 34.07 3.27
2489 5225 6.140108 CGTTTCATTCTTTCAACCAGTTTACG 59.860 38.462 0.00 0.00 0.00 3.18
2490 5226 6.687081 TTCATTCTTTCAACCAGTTTACGT 57.313 33.333 0.00 0.00 0.00 3.57
2492 5228 7.789273 TCATTCTTTCAACCAGTTTACGTAA 57.211 32.000 3.29 3.29 0.00 3.18
2493 5229 8.211116 TCATTCTTTCAACCAGTTTACGTAAA 57.789 30.769 16.59 16.59 0.00 2.01
2494 5230 8.842280 TCATTCTTTCAACCAGTTTACGTAAAT 58.158 29.630 22.65 9.96 0.00 1.40
2497 5233 7.632721 TCTTTCAACCAGTTTACGTAAATGAC 58.367 34.615 22.65 11.73 0.00 3.06
2498 5234 6.922247 TTCAACCAGTTTACGTAAATGACA 57.078 33.333 22.65 10.29 0.00 3.58
2499 5235 7.499321 TTCAACCAGTTTACGTAAATGACAT 57.501 32.000 22.65 8.12 0.00 3.06
2500 5236 8.604640 TTCAACCAGTTTACGTAAATGACATA 57.395 30.769 22.65 5.86 0.00 2.29
2502 5238 7.874016 TCAACCAGTTTACGTAAATGACATAGT 59.126 33.333 22.65 11.17 0.00 2.12
2507 5255 6.596497 AGTTTACGTAAATGACATAGTTGGGG 59.404 38.462 22.65 0.00 0.00 4.96
2554 5338 5.573282 CGTTCATGATTTCGTAGAGTCACTT 59.427 40.000 0.00 0.00 38.43 3.16
2663 5447 7.387948 AGAGTTTGAAGCAACATAAATACTCGT 59.612 33.333 0.00 0.00 0.00 4.18
2666 5450 6.089920 TGAAGCAACATAAATACTCGTTCG 57.910 37.500 0.00 0.00 0.00 3.95
2671 5455 2.864343 ACATAAATACTCGTTCGGCAGC 59.136 45.455 0.00 0.00 0.00 5.25
2737 5523 7.558807 ACAGATGATGCAAGAGATATTTTCCAA 59.441 33.333 0.00 0.00 0.00 3.53
2740 5526 6.855836 TGATGCAAGAGATATTTTCCAACAC 58.144 36.000 0.00 0.00 0.00 3.32
2751 5537 0.100325 TTCCAACACGTGCTGCAAAG 59.900 50.000 17.22 4.18 0.00 2.77
2776 5562 2.656560 AGAAGCTGCGTGTACTTAGG 57.343 50.000 0.00 0.00 0.00 2.69
2791 5577 6.653740 GTGTACTTAGGCTGAGGTTTTACAAT 59.346 38.462 11.31 0.00 0.00 2.71
2796 5582 4.662278 AGGCTGAGGTTTTACAATAGCAA 58.338 39.130 0.00 0.00 0.00 3.91
2845 5631 1.053424 AGCACCTTCGGTACTTGGAA 58.947 50.000 0.00 0.00 32.11 3.53
2860 5646 4.484912 ACTTGGAACTCAGAGGTACTTCT 58.515 43.478 0.82 0.82 41.55 2.85
2982 5768 9.998106 TTTAAGTAAGCTGAGATACTTTGAAGT 57.002 29.630 12.53 1.60 41.35 3.01
2984 5770 7.897575 AGTAAGCTGAGATACTTTGAAGTTG 57.102 36.000 1.20 0.00 40.37 3.16
2989 5775 5.123027 GCTGAGATACTTTGAAGTTGAAGGG 59.877 44.000 1.20 0.00 40.37 3.95
2990 5776 6.187727 TGAGATACTTTGAAGTTGAAGGGT 57.812 37.500 1.20 0.00 40.37 4.34
2991 5777 5.997746 TGAGATACTTTGAAGTTGAAGGGTG 59.002 40.000 1.20 0.00 40.37 4.61
3085 5901 0.105593 GCTATGAGGTGCAGCAGCTA 59.894 55.000 26.87 15.19 42.53 3.32
3091 5907 2.290514 TGAGGTGCAGCAGCTAAAAGAT 60.291 45.455 26.87 3.30 42.53 2.40
3101 5917 6.361114 CAGCAGCTAAAAGATATGAATGACG 58.639 40.000 0.00 0.00 0.00 4.35
3147 5963 3.969287 TCTTGAGAATGTCACTGGGAG 57.031 47.619 0.00 0.00 33.71 4.30
3176 5992 3.944015 AGCCTTAGAAGCAAAGCTACATG 59.056 43.478 0.00 0.00 38.25 3.21
3184 6000 5.182760 AGAAGCAAAGCTACATGAGAAAAGG 59.817 40.000 0.00 0.00 38.25 3.11
3266 6091 3.261897 GGAAACTCTGGAAGGTCTGATGA 59.738 47.826 0.00 0.00 0.00 2.92
3295 6120 5.013808 GCCTCAAATTAGGGGCCTTACTATA 59.986 44.000 0.84 0.00 38.77 1.31
3305 6130 6.849151 AGGGGCCTTACTATAAAAGGTTATG 58.151 40.000 0.84 0.00 44.56 1.90
3337 6162 0.400594 ACCCAGGCTGGTTACTTGAC 59.599 55.000 30.68 0.00 33.91 3.18
3338 6163 0.400213 CCCAGGCTGGTTACTTGACA 59.600 55.000 30.68 0.00 35.17 3.58
3352 6177 8.573035 TGGTTACTTGACAATTCTTATTTCCAC 58.427 33.333 0.00 0.00 0.00 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.117911 TCTACGGCAATTGTGAACAATATG 57.882 37.500 9.01 10.26 45.06 1.78
24 25 6.942532 ATCTACGGCAATTGTGAACAATAT 57.057 33.333 9.01 0.00 45.06 1.28
25 26 7.172532 GGATATCTACGGCAATTGTGAACAATA 59.827 37.037 9.01 0.52 45.06 1.90
28 29 4.814234 GGATATCTACGGCAATTGTGAACA 59.186 41.667 7.40 0.00 0.00 3.18
29 30 5.050091 CAGGATATCTACGGCAATTGTGAAC 60.050 44.000 7.40 0.00 0.00 3.18
31 32 4.100963 ACAGGATATCTACGGCAATTGTGA 59.899 41.667 7.40 0.00 0.00 3.58
32 33 4.380531 ACAGGATATCTACGGCAATTGTG 58.619 43.478 7.40 2.80 0.00 3.33
33 34 4.689612 ACAGGATATCTACGGCAATTGT 57.310 40.909 7.40 0.00 0.00 2.71
42 43 8.854614 ATGCCTTCAATTTACAGGATATCTAC 57.145 34.615 2.05 0.00 0.00 2.59
113 118 3.009363 TCTGTGATTTCCAGGAAGCATCA 59.991 43.478 11.27 11.27 0.00 3.07
134 141 0.462047 CATTACCGTCACTGCCCCTC 60.462 60.000 0.00 0.00 0.00 4.30
139 147 3.071479 TCTTTTCCATTACCGTCACTGC 58.929 45.455 0.00 0.00 0.00 4.40
146 154 8.349983 TCTTTCTTTCTTTCTTTTCCATTACCG 58.650 33.333 0.00 0.00 0.00 4.02
163 179 2.096019 CGTGCCTGCTTCTCTTTCTTTC 60.096 50.000 0.00 0.00 0.00 2.62
167 183 1.396301 CATCGTGCCTGCTTCTCTTTC 59.604 52.381 0.00 0.00 0.00 2.62
181 197 4.635765 ACAATGAAATGGTAGGTCATCGTG 59.364 41.667 0.00 0.00 30.76 4.35
183 199 5.818136 AACAATGAAATGGTAGGTCATCG 57.182 39.130 0.00 0.00 30.76 3.84
215 231 0.037590 AAGCAAGTGCCCATCCGTTA 59.962 50.000 0.00 0.00 43.38 3.18
217 233 1.675641 GAAGCAAGTGCCCATCCGT 60.676 57.895 0.00 0.00 43.38 4.69
243 259 0.882474 AGCGGACGCCTAAGCTATAG 59.118 55.000 13.63 0.00 43.17 1.31
280 296 2.766313 AGCGCACTCACTAATCAAACA 58.234 42.857 11.47 0.00 0.00 2.83
312 328 6.619801 ACTTGCTGAAAAACTAACAGGTAG 57.380 37.500 0.00 0.00 35.75 3.18
359 375 6.744175 ACAAGATGATCCAGATAGTCACAT 57.256 37.500 0.00 0.00 0.00 3.21
361 377 6.478344 GTCAACAAGATGATCCAGATAGTCAC 59.522 42.308 0.00 0.00 0.00 3.67
363 379 5.988561 GGTCAACAAGATGATCCAGATAGTC 59.011 44.000 0.00 0.00 0.00 2.59
364 380 5.923204 GGTCAACAAGATGATCCAGATAGT 58.077 41.667 0.00 0.00 0.00 2.12
372 388 3.019564 CAAGGGGGTCAACAAGATGATC 58.980 50.000 0.00 0.00 0.00 2.92
373 389 2.291800 CCAAGGGGGTCAACAAGATGAT 60.292 50.000 0.00 0.00 0.00 2.45
374 390 1.075374 CCAAGGGGGTCAACAAGATGA 59.925 52.381 0.00 0.00 0.00 2.92
375 391 1.075374 TCCAAGGGGGTCAACAAGATG 59.925 52.381 0.00 0.00 38.11 2.90
376 392 1.455822 TCCAAGGGGGTCAACAAGAT 58.544 50.000 0.00 0.00 38.11 2.40
391 418 7.287927 AGAGAAATAGGACGAATGACTATCCAA 59.712 37.037 0.00 0.00 33.33 3.53
393 420 7.222000 AGAGAAATAGGACGAATGACTATCC 57.778 40.000 0.00 0.00 0.00 2.59
395 422 8.291032 CGTAAGAGAAATAGGACGAATGACTAT 58.709 37.037 0.00 0.00 43.02 2.12
396 423 7.255035 CCGTAAGAGAAATAGGACGAATGACTA 60.255 40.741 0.00 0.00 43.02 2.59
401 430 5.593502 AGACCGTAAGAGAAATAGGACGAAT 59.406 40.000 0.00 0.00 43.02 3.34
403 432 4.521146 AGACCGTAAGAGAAATAGGACGA 58.479 43.478 0.00 0.00 43.02 4.20
420 449 2.496817 GGAGGCAGCACTAGACCG 59.503 66.667 0.00 0.00 0.00 4.79
451 480 2.580322 TGAAGGGGAATGGTAGATTGCA 59.420 45.455 0.00 0.00 0.00 4.08
459 488 0.684153 CGGCAATGAAGGGGAATGGT 60.684 55.000 0.00 0.00 0.00 3.55
478 507 5.314923 TGATGAAGGTAGAAAGCAATTGC 57.685 39.130 23.05 23.05 42.49 3.56
481 510 5.826737 CAGGATGATGAAGGTAGAAAGCAAT 59.173 40.000 0.00 0.00 39.69 3.56
482 511 5.188434 CAGGATGATGAAGGTAGAAAGCAA 58.812 41.667 0.00 0.00 39.69 3.91
487 516 3.519107 TGTGCAGGATGATGAAGGTAGAA 59.481 43.478 0.00 0.00 39.69 2.10
509 550 5.068987 GGAGAGAGCTTACACAGATGAAGAT 59.931 44.000 0.00 0.00 0.00 2.40
529 570 4.660771 ACAAGAAAGAAAAGAGAGGGGAGA 59.339 41.667 0.00 0.00 0.00 3.71
532 573 4.718961 TGACAAGAAAGAAAAGAGAGGGG 58.281 43.478 0.00 0.00 0.00 4.79
539 580 8.202745 AGACTAACACTGACAAGAAAGAAAAG 57.797 34.615 0.00 0.00 0.00 2.27
554 595 6.412362 ACACAGATGAAGAAGACTAACACT 57.588 37.500 0.00 0.00 0.00 3.55
555 596 6.309251 GCTACACAGATGAAGAAGACTAACAC 59.691 42.308 0.00 0.00 0.00 3.32
570 611 3.196685 GGAAACAGAGGAGCTACACAGAT 59.803 47.826 0.00 0.00 0.00 2.90
577 657 4.873010 ACAGATAGGAAACAGAGGAGCTA 58.127 43.478 0.00 0.00 0.00 3.32
601 681 4.389890 AAATCAGTGAACTGCAGCAAAA 57.610 36.364 15.27 0.00 43.46 2.44
603 683 4.098349 AGAAAAATCAGTGAACTGCAGCAA 59.902 37.500 15.27 0.00 43.46 3.91
606 686 4.320788 GGGAGAAAAATCAGTGAACTGCAG 60.321 45.833 13.48 13.48 43.46 4.41
612 692 5.301805 GGAAACAGGGAGAAAAATCAGTGAA 59.698 40.000 0.00 0.00 0.00 3.18
623 703 1.677552 GAGCCGGAAACAGGGAGAA 59.322 57.895 5.05 0.00 0.00 2.87
635 715 4.729918 AAAGCCTGCAGGAGCCGG 62.730 66.667 37.21 10.35 46.77 6.13
637 717 2.753446 GGAAAGCCTGCAGGAGCC 60.753 66.667 37.21 24.42 41.13 4.70
649 729 5.355350 GGAGTACCAAATCAGTGATGGAAAG 59.645 44.000 17.85 4.07 37.66 2.62
658 738 2.237392 GCCTCTGGAGTACCAAATCAGT 59.763 50.000 0.00 0.00 46.32 3.41
659 739 2.420687 GGCCTCTGGAGTACCAAATCAG 60.421 54.545 0.00 0.00 46.32 2.90
660 740 1.559682 GGCCTCTGGAGTACCAAATCA 59.440 52.381 0.00 0.00 46.32 2.57
661 741 1.559682 TGGCCTCTGGAGTACCAAATC 59.440 52.381 3.32 0.00 46.32 2.17
662 742 1.668826 TGGCCTCTGGAGTACCAAAT 58.331 50.000 3.32 0.00 46.32 2.32
663 743 1.559682 GATGGCCTCTGGAGTACCAAA 59.440 52.381 3.32 0.00 46.32 3.28
667 747 3.961408 TCTAAAGATGGCCTCTGGAGTAC 59.039 47.826 3.32 0.00 33.29 2.73
693 792 0.617820 ATAGTCAACGGGAGCCACCT 60.618 55.000 0.00 0.00 38.98 4.00
695 794 1.338769 ACAATAGTCAACGGGAGCCAC 60.339 52.381 0.00 0.00 0.00 5.01
707 1176 8.014322 TGAACACGTAGAAATGAACAATAGTC 57.986 34.615 0.00 0.00 0.00 2.59
708 1177 7.956420 TGAACACGTAGAAATGAACAATAGT 57.044 32.000 0.00 0.00 0.00 2.12
719 1188 4.282449 TGGAAGAGGATGAACACGTAGAAA 59.718 41.667 0.00 0.00 0.00 2.52
724 1193 1.002087 GGTGGAAGAGGATGAACACGT 59.998 52.381 0.00 0.00 0.00 4.49
737 1206 5.414765 GGGTAAAGACACTAAATGGTGGAAG 59.585 44.000 1.94 0.00 41.09 3.46
783 1252 4.726035 TCCGGAGAAGTATATCAGGAGT 57.274 45.455 0.00 0.00 35.28 3.85
788 1257 8.428852 TGAAAAATGATCCGGAGAAGTATATCA 58.571 33.333 11.34 6.43 0.00 2.15
800 1269 7.118390 GGATCACTAGTATGAAAAATGATCCGG 59.882 40.741 13.07 0.00 46.63 5.14
816 1285 7.248976 TGGGTCATAGATTATGGATCACTAGT 58.751 38.462 0.00 0.00 37.22 2.57
819 1288 6.329986 TGTTGGGTCATAGATTATGGATCACT 59.670 38.462 0.00 0.00 37.22 3.41
820 1289 6.533730 TGTTGGGTCATAGATTATGGATCAC 58.466 40.000 0.00 0.00 37.22 3.06
822 1291 7.173907 CAGTTGTTGGGTCATAGATTATGGATC 59.826 40.741 0.00 0.00 36.81 3.36
825 1294 5.009010 GCAGTTGTTGGGTCATAGATTATGG 59.991 44.000 0.00 0.00 36.81 2.74
828 1297 4.523083 GGCAGTTGTTGGGTCATAGATTA 58.477 43.478 0.00 0.00 0.00 1.75
829 1298 3.356290 GGCAGTTGTTGGGTCATAGATT 58.644 45.455 0.00 0.00 0.00 2.40
830 1299 2.357154 GGGCAGTTGTTGGGTCATAGAT 60.357 50.000 0.00 0.00 0.00 1.98
833 1302 0.774276 TGGGCAGTTGTTGGGTCATA 59.226 50.000 0.00 0.00 0.00 2.15
834 1303 0.105760 TTGGGCAGTTGTTGGGTCAT 60.106 50.000 0.00 0.00 0.00 3.06
835 1304 0.324738 TTTGGGCAGTTGTTGGGTCA 60.325 50.000 0.00 0.00 0.00 4.02
836 1305 0.104120 GTTTGGGCAGTTGTTGGGTC 59.896 55.000 0.00 0.00 0.00 4.46
837 1306 0.616111 TGTTTGGGCAGTTGTTGGGT 60.616 50.000 0.00 0.00 0.00 4.51
871 1340 4.516698 ACTCTAAAGGCAGATTTGTGTGTG 59.483 41.667 0.00 0.00 0.00 3.82
897 1373 6.438425 AGAGCAAAGATGGGAAATGTGTAAAT 59.562 34.615 0.00 0.00 0.00 1.40
903 1379 4.313020 AGAGAGCAAAGATGGGAAATGT 57.687 40.909 0.00 0.00 0.00 2.71
904 1380 6.956202 ATAAGAGAGCAAAGATGGGAAATG 57.044 37.500 0.00 0.00 0.00 2.32
952 1438 7.148000 GGGGAAGGATGAATCTCTTACTTTTTG 60.148 40.741 0.00 0.00 26.27 2.44
958 1493 4.656112 TGAGGGGAAGGATGAATCTCTTAC 59.344 45.833 0.00 0.00 0.00 2.34
959 1494 4.895836 TGAGGGGAAGGATGAATCTCTTA 58.104 43.478 0.00 0.00 0.00 2.10
962 1497 3.008923 GGATGAGGGGAAGGATGAATCTC 59.991 52.174 0.00 0.00 0.00 2.75
967 1508 0.346574 TGGGATGAGGGGAAGGATGA 59.653 55.000 0.00 0.00 0.00 2.92
974 1515 2.687200 CACCGTGGGATGAGGGGA 60.687 66.667 0.00 0.00 0.00 4.81
1050 1592 1.399714 TCAAGATCGGCGATACCACT 58.600 50.000 24.05 12.73 39.03 4.00
1135 1677 2.165167 CTGTGGCATGATGTTGGTCTT 58.835 47.619 0.00 0.00 0.00 3.01
1206 1748 1.757306 CTGCTGGACCCAGTTGTCT 59.243 57.895 16.61 0.00 45.24 3.41
1234 1776 3.138468 AGGTCCTCAGCTTTACAAAAGGT 59.862 43.478 0.00 0.00 0.00 3.50
1239 1781 1.699634 AGCAGGTCCTCAGCTTTACAA 59.300 47.619 0.00 0.00 34.37 2.41
1289 1831 1.072965 CCTTCCCACTCTCTGCTTTGT 59.927 52.381 0.00 0.00 0.00 2.83
1328 1870 7.934120 GCTTCATAATAGTACCACTGGAAGATT 59.066 37.037 0.71 0.00 37.43 2.40
1392 1937 5.007332 GTCGAGTAGCTTTTTGTTCTTTGGA 59.993 40.000 0.00 0.00 0.00 3.53
1458 2003 2.910688 AGCAGAGAAGTTCACGGAAA 57.089 45.000 5.50 0.00 0.00 3.13
1489 2034 2.743928 GAAGGCCTCAGCACCACG 60.744 66.667 5.23 0.00 42.56 4.94
1490 2035 2.743928 CGAAGGCCTCAGCACCAC 60.744 66.667 5.23 0.00 42.56 4.16
1521 2066 7.649306 GCAAATGATGTATCAACTGGAATAACC 59.351 37.037 0.00 0.00 40.69 2.85
1771 2334 0.036388 AACCGTGTATGGCCACTGAG 60.036 55.000 8.16 0.00 33.07 3.35
1906 4596 3.914312 TCTCTTCAAACCAGACATCGTC 58.086 45.455 0.00 0.00 0.00 4.20
1907 4597 4.058817 GTTCTCTTCAAACCAGACATCGT 58.941 43.478 0.00 0.00 0.00 3.73
1908 4598 4.058124 TGTTCTCTTCAAACCAGACATCG 58.942 43.478 0.00 0.00 0.00 3.84
2083 4776 3.373439 GCATTGTCCTTGAAGAGTGCTAG 59.627 47.826 0.00 0.00 0.00 3.42
2101 4794 1.708341 ACTGCACCAGAAAAGGCATT 58.292 45.000 0.00 0.00 35.45 3.56
2120 4813 1.835494 CACCTTCTGGTCTCCGACTA 58.165 55.000 0.00 0.00 46.60 2.59
2261 4954 3.281727 ACTCCACAAAAGTGCTCAGAA 57.718 42.857 0.00 0.00 0.00 3.02
2355 5084 4.274950 ACGTGTGAACCAACTCCTTAATTG 59.725 41.667 0.00 0.00 0.00 2.32
2356 5085 4.274950 CACGTGTGAACCAACTCCTTAATT 59.725 41.667 7.58 0.00 0.00 1.40
2376 5105 1.608717 AAGTCCCTCTGCTAGCCACG 61.609 60.000 13.29 0.49 0.00 4.94
2421 5150 2.785857 CCCCTCCCAATATCTTCCAGTT 59.214 50.000 0.00 0.00 0.00 3.16
2423 5152 2.422746 ACCCCTCCCAATATCTTCCAG 58.577 52.381 0.00 0.00 0.00 3.86
2445 5181 3.390135 ACGCAGAGAAACTCATCGAAAA 58.610 40.909 15.15 0.00 33.91 2.29
2458 5194 4.024048 GGTTGAAAGAATGAAACGCAGAGA 60.024 41.667 0.00 0.00 0.00 3.10
2463 5199 3.964909 ACTGGTTGAAAGAATGAAACGC 58.035 40.909 0.00 0.00 0.00 4.84
2489 5225 9.131791 ACAATATTCCCCAACTATGTCATTTAC 57.868 33.333 0.00 0.00 0.00 2.01
2490 5226 9.130661 CACAATATTCCCCAACTATGTCATTTA 57.869 33.333 0.00 0.00 0.00 1.40
2492 5228 7.125391 ACACAATATTCCCCAACTATGTCATT 58.875 34.615 0.00 0.00 0.00 2.57
2493 5229 6.672593 ACACAATATTCCCCAACTATGTCAT 58.327 36.000 0.00 0.00 0.00 3.06
2494 5230 6.073447 ACACAATATTCCCCAACTATGTCA 57.927 37.500 0.00 0.00 0.00 3.58
2497 5233 7.014134 TGCATAACACAATATTCCCCAACTATG 59.986 37.037 0.00 0.00 0.00 2.23
2498 5234 7.066142 TGCATAACACAATATTCCCCAACTAT 58.934 34.615 0.00 0.00 0.00 2.12
2499 5235 6.427441 TGCATAACACAATATTCCCCAACTA 58.573 36.000 0.00 0.00 0.00 2.24
2500 5236 5.268387 TGCATAACACAATATTCCCCAACT 58.732 37.500 0.00 0.00 0.00 3.16
2502 5238 5.896106 TCATGCATAACACAATATTCCCCAA 59.104 36.000 0.00 0.00 0.00 4.12
2507 5255 7.800767 ACGAGATCATGCATAACACAATATTC 58.199 34.615 0.00 0.00 0.00 1.75
2542 5326 5.290386 ACTTCTTTGGAAAGTGACTCTACG 58.710 41.667 0.00 0.00 37.31 3.51
2544 5328 6.516718 CAGACTTCTTTGGAAAGTGACTCTA 58.483 40.000 0.00 0.00 37.31 2.43
2607 5391 3.775202 ACAGATAGATGTCGAACAGTGC 58.225 45.455 0.00 0.00 0.00 4.40
2663 5447 2.418368 AAATGATGTAGGCTGCCGAA 57.582 45.000 13.96 2.44 0.00 4.30
2666 5450 2.561569 ACGTAAATGATGTAGGCTGCC 58.438 47.619 11.65 11.65 0.00 4.85
2671 5455 9.193133 CAGATAAAGGTACGTAAATGATGTAGG 57.807 37.037 0.00 0.00 29.85 3.18
2737 5523 0.808125 TCAAACTTTGCAGCACGTGT 59.192 45.000 18.38 0.68 0.00 4.49
2740 5526 2.473530 TCTTCAAACTTTGCAGCACG 57.526 45.000 0.00 0.00 0.00 5.34
2751 5537 2.544267 AGTACACGCAGCTTCTTCAAAC 59.456 45.455 0.00 0.00 0.00 2.93
2776 5562 5.371115 TGTTGCTATTGTAAAACCTCAGC 57.629 39.130 0.00 0.00 0.00 4.26
2796 5582 3.073062 ACCAACAGATTCAGGTAGCTTGT 59.927 43.478 0.00 0.00 31.32 3.16
2860 5646 5.837770 ATGATCCAGGCAATTCAGAGATA 57.162 39.130 0.00 0.00 0.00 1.98
2974 5760 2.689983 ACTGCACCCTTCAACTTCAAAG 59.310 45.455 0.00 0.00 0.00 2.77
2975 5761 2.687935 GACTGCACCCTTCAACTTCAAA 59.312 45.455 0.00 0.00 0.00 2.69
2982 5768 2.238521 GGATTTGACTGCACCCTTCAA 58.761 47.619 0.00 0.00 0.00 2.69
2984 5770 1.177401 GGGATTTGACTGCACCCTTC 58.823 55.000 0.00 0.00 37.75 3.46
2989 5775 4.576463 CCTATGTAAGGGATTTGACTGCAC 59.424 45.833 0.00 0.00 42.32 4.57
2990 5776 4.780815 CCTATGTAAGGGATTTGACTGCA 58.219 43.478 0.00 0.00 42.32 4.41
2991 5777 3.565902 GCCTATGTAAGGGATTTGACTGC 59.434 47.826 0.00 0.00 46.65 4.40
3085 5901 5.066505 GCCTCCAACGTCATTCATATCTTTT 59.933 40.000 0.00 0.00 0.00 2.27
3091 5907 2.236146 ACTGCCTCCAACGTCATTCATA 59.764 45.455 0.00 0.00 0.00 2.15
3147 5963 2.717639 TGCTTCTAAGGCTTGATCCC 57.282 50.000 10.69 0.00 0.00 3.85
3176 5992 5.697826 CAAGTTCTCAAGATGCCTTTTCTC 58.302 41.667 0.00 0.00 0.00 2.87
3184 6000 2.157738 AGGTGCAAGTTCTCAAGATGC 58.842 47.619 0.00 0.00 37.52 3.91
3266 6091 0.034477 CCCCTAATTTGAGGCGGTGT 60.034 55.000 0.00 0.00 35.00 4.16
3295 6120 8.428852 GGGTATTTTGCATATCCATAACCTTTT 58.571 33.333 0.00 0.00 0.00 2.27
3305 6130 3.256631 CAGCCTGGGTATTTTGCATATCC 59.743 47.826 0.00 0.00 0.00 2.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.