AutoCloner

Multiple sequence alignment - TraesCS7A01G566900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7A01G566900	chr7A	100.000	2612	0	0	1	2612	735959638	735962249	0.000000e+00	4824.0
1	TraesCS7A01G566900	chr7A	91.538	1489	88	20	676	2132	735786255	735784773	0.000000e+00	2017.0
2	TraesCS7A01G566900	chr7A	85.019	1315	145	19	719	2015	736096703	736095423	0.000000e+00	1290.0
3	TraesCS7A01G566900	chr7A	88.563	341	15	15	2158	2496	736002125	736001807	2.440000e-105	392.0
4	TraesCS7A01G566900	chr7A	79.464	560	61	31	1	527	735787035	735786497	5.350000e-92	348.0
5	TraesCS7A01G566900	chr7A	86.792	212	13	8	469	671	736097046	736096841	3.380000e-54	222.0
6	TraesCS7A01G566900	chr7A	90.984	122	4	4	461	578	193933151	193933269	9.680000e-35	158.0
7	TraesCS7A01G566900	chr7A	100.000	54	0	0	2509	2562	735962022	735962075	1.650000e-17	100.0
8	TraesCS7A01G566900	chr7A	100.000	54	0	0	2385	2438	735962146	735962199	1.650000e-17	100.0
9	TraesCS7A01G566900	chr7A	96.667	60	1	1	459	518	736097963	736097905	5.950000e-17	99.0
10	TraesCS7A01G566900	chr7A	98.148	54	1	0	2509	2562	736001918	736001865	7.700000e-16	95.3
11	TraesCS7A01G566900	chr7A	96.078	51	2	0	2562	2612	736001637	736001587	1.670000e-12	84.2
12	TraesCS7A01G566900	chr7A	94.872	39	2	0	231	269	736097893	736097855	7.810000e-06	62.1
13	TraesCS7A01G566900	chr7A	100.000	28	0	0	431	458	736098124	736098097	5.000000e-03	52.8
14	TraesCS7A01G566900	chr7B	92.434	1705	80	20	468	2152	745229683	745231358	0.000000e+00	2388.0
15	TraesCS7A01G566900	chr7B	92.720	1250	82	6	909	2152	744176567	744177813	0.000000e+00	1796.0
16	TraesCS7A01G566900	chr7B	88.658	1490	135	25	538	2010	743650182	743651654	0.000000e+00	1784.0
17	TraesCS7A01G566900	chr7B	90.116	1123	101	7	1037	2152	743999177	743998058	0.000000e+00	1450.0
18	TraesCS7A01G566900	chr7B	88.474	1206	126	5	957	2152	744239563	744240765	0.000000e+00	1445.0
19	TraesCS7A01G566900	chr7B	87.396	1198	129	11	957	2147	744248065	744249247	0.000000e+00	1356.0
20	TraesCS7A01G566900	chr7B	87.333	1200	133	11	957	2152	744295080	744293896	0.000000e+00	1356.0
21	TraesCS7A01G566900	chr7B	92.012	964	64	3	1056	2019	744143224	744144174	0.000000e+00	1341.0
22	TraesCS7A01G566900	chr7B	87.812	361	26	6	2154	2496	744177907	744178267	8.700000e-110	407.0
23	TraesCS7A01G566900	chr7B	88.218	348	23	6	2165	2496	744240838	744241183	1.460000e-107	399.0
24	TraesCS7A01G566900	chr7B	87.500	344	32	5	2154	2496	745231411	745231744	1.130000e-103	387.0
25	TraesCS7A01G566900	chr7B	84.848	330	24	10	2154	2466	744293852	744293532	2.520000e-80	309.0
26	TraesCS7A01G566900	chr7B	82.471	348	47	12	2154	2496	743997989	743997651	2.540000e-75	292.0
27	TraesCS7A01G566900	chr7B	85.600	250	18	10	2263	2496	744147098	744147345	2.010000e-61	246.0
28	TraesCS7A01G566900	chr7B	86.441	177	10	6	472	637	745202426	745202253	5.740000e-42	182.0
29	TraesCS7A01G566900	chr7B	86.335	161	8	6	284	430	745229391	745229551	2.080000e-36	163.0
30	TraesCS7A01G566900	chr7B	89.189	111	10	1	325	433	745202687	745202577	1.260000e-28	137.0
31	TraesCS7A01G566900	chr7B	79.618	157	22	8	49	200	743649568	743649719	1.280000e-18	104.0
32	TraesCS7A01G566900	chr7B	96.610	59	2	0	120	178	745229247	745229305	5.950000e-17	99.0
33	TraesCS7A01G566900	chr7B	98.148	54	1	0	2509	2562	744241072	744241125	7.700000e-16	95.3
34	TraesCS7A01G566900	chr7B	94.737	57	3	0	2556	2612	744147511	744147567	3.580000e-14	89.8
35	TraesCS7A01G566900	chr7B	98.039	51	1	0	2562	2612	744178437	744178487	3.580000e-14	89.8
36	TraesCS7A01G566900	chr7B	96.078	51	2	0	2562	2612	744293372	744293322	1.670000e-12	84.2
37	TraesCS7A01G566900	chr7B	83.516	91	9	1	284	368	743649848	743649938	2.150000e-11	80.5
38	TraesCS7A01G566900	chr7B	97.561	41	1	0	2113	2153	744144217	744144257	1.300000e-08	71.3
39	TraesCS7A01G566900	chr7B	93.478	46	3	0	2567	2612	743997478	743997433	4.660000e-08	69.4
40	TraesCS7A01G566900	chr7B	92.857	42	3	0	427	468	745202562	745202521	7.810000e-06	62.1
41	TraesCS7A01G566900	chr7D	86.090	1977	165	48	461	2374	632140722	632142651	0.000000e+00	2026.0
42	TraesCS7A01G566900	chr7D	84.530	181	12	6	49	214	632139769	632139948	5.780000e-37	165.0
43	TraesCS7A01G566900	chr7D	91.837	49	3	1	2261	2309	632142709	632142756	1.680000e-07	67.6
44	TraesCS7A01G566900	chr7D	100.000	33	0	0	427	459	632140583	632140615	7.810000e-06	62.1
45	TraesCS7A01G566900	chr5A	90.984	122	4	2	461	578	574016136	574016018	9.680000e-35	158.0
46	TraesCS7A01G566900	chr1A	90.164	122	5	4	461	578	582060351	582060233	4.500000e-33	152.0
47	TraesCS7A01G566900	chr4B	79.208	202	21	8	274	459	569526468	569526664	1.270000e-23	121.0
48	TraesCS7A01G566900	chr6B	95.556	45	0	2	225	267	718779393	718779437	1.300000e-08	71.3
49	TraesCS7A01G566900	chr6B	91.667	48	1	2	347	391	718779559	718779606	2.170000e-06	63.9

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7A01G566900	chr7A	735959638	735962249	2611	False	1674.666667	4824	100.000000	1	2612	3	chr7A.!!$F2	2611
1	TraesCS7A01G566900	chr7A	735784773	735787035	2262	True	1182.500000	2017	85.501000	1	2132	2	chr7A.!!$R1	2131
2	TraesCS7A01G566900	chr7A	736095423	736098124	2701	True	345.180000	1290	92.670000	231	2015	5	chr7A.!!$R3	1784
3	TraesCS7A01G566900	chr7B	744248065	744249247	1182	False	1356.000000	1356	87.396000	957	2147	1	chr7B.!!$F1	1190
4	TraesCS7A01G566900	chr7B	744176567	744178487	1920	False	764.266667	1796	92.857000	909	2612	3	chr7B.!!$F4	1703
5	TraesCS7A01G566900	chr7B	745229247	745231744	2497	False	759.250000	2388	90.719750	120	2496	4	chr7B.!!$F6	2376
6	TraesCS7A01G566900	chr7B	743649568	743651654	2086	False	656.166667	1784	83.930667	49	2010	3	chr7B.!!$F2	1961
7	TraesCS7A01G566900	chr7B	744239563	744241183	1620	False	646.433333	1445	91.613333	957	2562	3	chr7B.!!$F5	1605
8	TraesCS7A01G566900	chr7B	743997433	743999177	1744	True	603.800000	1450	88.688333	1037	2612	3	chr7B.!!$R1	1575
9	TraesCS7A01G566900	chr7B	744293322	744295080	1758	True	583.066667	1356	89.419667	957	2612	3	chr7B.!!$R2	1655
10	TraesCS7A01G566900	chr7B	744143224	744147567	4343	False	437.025000	1341	92.477500	1056	2612	4	chr7B.!!$F3	1556
11	TraesCS7A01G566900	chr7D	632139769	632142756	2987	False	580.175000	2026	90.614250	49	2374	4	chr7D.!!$F1	2325

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
949	1940	0.606401	ACTATTGCAGCAACAGCCGT	60.606	50.0	13.59	2.47	0.0	5.68	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2539	6414	0.039035	TGTATTGGCAGGGGTTCACC	59.961	55.0	0.0	0.0	39.11	4.02	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
200	216	6.699575	TTCTTTCTTTCTTGTTCCTCCTTG	57.300	37.500	0.00	0.00	0.00	3.61
201	217	6.001449	TCTTTCTTTCTTGTTCCTCCTTGA	57.999	37.500	0.00	0.00	0.00	3.02
277	339	4.797349	GCTAACTGCTGAAAATCTGATTGC	59.203	41.667	3.22	3.73	38.95	3.56
280	342	3.825014	ACTGCTGAAAATCTGATTGCTGT	59.175	39.130	13.46	13.46	0.00	4.40
282	344	5.651139	ACTGCTGAAAATCTGATTGCTGTAT	59.349	36.000	16.04	0.00	31.41	2.29
297	374	2.928334	CTGTATGCCATCAGAAGCCTT	58.072	47.619	0.00	0.00	34.02	4.35
459	1100	0.954452	GTTGGTGAGGCAGTTCAAGG	59.046	55.000	0.00	0.00	0.00	3.61
521	1293	2.420687	CCAGCCATCTCAAGGGTTAGTC	60.421	54.545	0.00	0.00	33.93	2.59
653	1514	3.504134	TGTTGTATTGTTATTGGTGCGCT	59.496	39.130	9.73	0.00	0.00	5.92
767	1727	8.886719	AGTAGATAAGGTTAAACCGTTAAATGC	58.113	33.333	0.00	0.00	44.90	3.56
773	1733	6.384224	AGGTTAAACCGTTAAATGCTAAAGC	58.616	36.000	0.00	0.00	44.90	3.51
852	1829	4.216257	TGAGGCAGTTCAAGATTAGTTTGC	59.784	41.667	0.00	0.00	0.00	3.68
853	1830	4.144297	AGGCAGTTCAAGATTAGTTTGCA	58.856	39.130	0.00	0.00	32.24	4.08
854	1831	4.584325	AGGCAGTTCAAGATTAGTTTGCAA	59.416	37.500	0.00	0.00	32.24	4.08
855	1832	5.244626	AGGCAGTTCAAGATTAGTTTGCAAT	59.755	36.000	0.00	0.00	32.24	3.56
856	1833	6.434028	AGGCAGTTCAAGATTAGTTTGCAATA	59.566	34.615	0.00	0.00	32.24	1.90
857	1834	7.039784	AGGCAGTTCAAGATTAGTTTGCAATAA	60.040	33.333	0.00	0.00	32.24	1.40
858	1835	7.598493	GGCAGTTCAAGATTAGTTTGCAATAAA	59.402	33.333	0.00	0.00	32.24	1.40
860	1837	9.683069	CAGTTCAAGATTAGTTTGCAATAAACT	57.317	29.630	0.00	3.44	42.53	2.66
861	1838	9.683069	AGTTCAAGATTAGTTTGCAATAAACTG	57.317	29.630	11.67	3.69	40.38	3.16
863	1840	7.885297	TCAAGATTAGTTTGCAATAAACTGCT	58.115	30.769	11.67	4.74	43.07	4.24
949	1940	0.606401	ACTATTGCAGCAACAGCCGT	60.606	50.000	13.59	2.47	0.00	5.68
1110	2101	2.712057	AAAACTTCTTGGCTGATGCG	57.288	45.000	0.00	0.00	40.82	4.73
1155	2146	1.752198	CGTTCAAGAGTGGGTGGGA	59.248	57.895	0.00	0.00	0.00	4.37
1232	2226	1.512996	GCCATGGAGCGTGGATCATG	61.513	60.000	18.40	0.00	42.73	3.07
1386	2380	3.653539	TTCAACTTCGTCAATCTCGGA	57.346	42.857	0.00	0.00	0.00	4.55
1443	2440	1.202758	CGCCATGGTAATCCTAGCCAA	60.203	52.381	14.67	0.00	35.74	4.52
1476	2473	0.175073	ACTTTGACCGGTCGGCTATC	59.825	55.000	28.70	5.10	39.32	2.08
1514	2511	0.871057	GAAGACACAAGAGCACTGGC	59.129	55.000	0.00	0.00	41.61	4.85
1609	2606	4.021925	GCAAGACCACCCTCGCCT	62.022	66.667	0.00	0.00	0.00	5.52
1625	2622	2.168521	TCGCCTAGAAGGTCTTCAATGG	59.831	50.000	12.54	11.19	41.84	3.16
1669	2666	4.766373	TCAGCAAAAAGATATGGTTGAGCA	59.234	37.500	0.00	0.00	0.00	4.26
1770	2767	1.471684	GCAAAGACCAGCCTTCATGAG	59.528	52.381	0.00	0.00	0.00	2.90
1878	2875	3.712016	TTACCCTTAGTCAATGCTGCA	57.288	42.857	4.13	4.13	0.00	4.41
1975	2972	0.930310	CCATGTCGACACATTAGCGG	59.070	55.000	22.71	8.87	40.66	5.52
2019	3016	6.900568	CTCAAGAAGCAGGTATGTTCTTAG	57.099	41.667	0.00	0.00	35.99	2.18
2156	3264	8.553459	ACATGTAATTTAGTGACTTCTTGGAG	57.447	34.615	0.00	0.00	0.00	3.86
2162	3270	8.970859	AATTTAGTGACTTCTTGGAGATATGG	57.029	34.615	0.00	0.00	0.00	2.74
2163	3271	7.496346	TTTAGTGACTTCTTGGAGATATGGT	57.504	36.000	0.00	0.00	0.00	3.55
2198	3306	4.038763	TGAGACACGTTCAAAGACACCTAT	59.961	41.667	0.00	0.00	0.00	2.57
2324	6111	8.375493	AGTAACCTTTTGTGATATCCAGTCTA	57.625	34.615	0.00	0.00	0.00	2.59
2499	6374	9.162764	TGGCAGTAATTTTACTAGAGAATGTTC	57.837	33.333	0.00	0.00	41.82	3.18
2508	6383	5.426689	ACTAGAGAATGTTCCATCTTGCA	57.573	39.130	0.00	0.00	0.00	4.08
2509	6384	5.426504	ACTAGAGAATGTTCCATCTTGCAG	58.573	41.667	0.00	0.00	0.00	4.41
2511	6386	4.660168	AGAGAATGTTCCATCTTGCAGTT	58.340	39.130	0.00	0.00	0.00	3.16
2513	6388	6.421485	AGAGAATGTTCCATCTTGCAGTTAT	58.579	36.000	0.00	0.00	0.00	1.89
2516	6391	7.899973	AGAATGTTCCATCTTGCAGTTATTTT	58.100	30.769	0.00	0.00	0.00	1.82
2517	6392	9.023962	AGAATGTTCCATCTTGCAGTTATTTTA	57.976	29.630	0.00	0.00	0.00	1.52
2518	6393	9.638239	GAATGTTCCATCTTGCAGTTATTTTAA	57.362	29.630	0.00	0.00	0.00	1.52
2519	6394	9.643693	AATGTTCCATCTTGCAGTTATTTTAAG	57.356	29.630	0.00	0.00	0.00	1.85
2521	6396	8.296713	TGTTCCATCTTGCAGTTATTTTAAGAC	58.703	33.333	0.00	0.00	31.00	3.01
2523	6398	8.044060	TCCATCTTGCAGTTATTTTAAGACAG	57.956	34.615	0.00	0.00	31.00	3.51
2524	6399	7.882791	TCCATCTTGCAGTTATTTTAAGACAGA	59.117	33.333	0.00	0.00	31.00	3.41
2542	6417	8.574196	AAGACAGAAAAATAACAATTTCGGTG	57.426	30.769	8.37	0.00	41.69	4.94
2543	6418	7.936584	AGACAGAAAAATAACAATTTCGGTGA	58.063	30.769	8.37	0.00	41.69	4.02
2544	6419	8.410141	AGACAGAAAAATAACAATTTCGGTGAA	58.590	29.630	8.37	0.00	41.69	3.18
2546	6421	7.436970	ACAGAAAAATAACAATTTCGGTGAACC	59.563	33.333	3.82	0.00	40.67	3.62
2547	6422	6.926826	AGAAAAATAACAATTTCGGTGAACCC	59.073	34.615	0.00	0.00	39.83	4.11
2550	6425	1.616159	ACAATTTCGGTGAACCCCTG	58.384	50.000	0.00	0.00	0.00	4.45
2551	6426	0.243636	CAATTTCGGTGAACCCCTGC	59.756	55.000	0.00	0.00	0.00	4.85
2552	6427	0.898326	AATTTCGGTGAACCCCTGCC	60.898	55.000	0.00	0.00	0.00	4.85
2553	6428	2.075355	ATTTCGGTGAACCCCTGCCA	62.075	55.000	0.00	0.00	0.00	4.92
2554	6429	2.285889	TTTCGGTGAACCCCTGCCAA	62.286	55.000	0.00	0.00	0.00	4.52
2558	6469	0.039035	GGTGAACCCCTGCCAATACA	59.961	55.000	0.00	0.00	0.00	2.29
2560	6471	1.544246	GTGAACCCCTGCCAATACAAC	59.456	52.381	0.00	0.00	0.00	3.32

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
102	108	0.813821	GAACCCCTGCTCAATCTTGC	59.186	55.000	0.00	0.00	0.00	4.01
200	216	5.293079	CAGCTAGCAGACTTTCCAATTACTC	59.707	44.000	18.83	0.00	0.00	2.59
201	217	5.046304	TCAGCTAGCAGACTTTCCAATTACT	60.046	40.000	18.83	0.00	0.00	2.24
277	339	2.634815	AGGCTTCTGATGGCATACAG	57.365	50.000	17.34	16.14	35.72	2.74
280	342	4.088634	ACAAAAAGGCTTCTGATGGCATA	58.911	39.130	17.34	0.00	0.00	3.14
282	344	2.318908	ACAAAAAGGCTTCTGATGGCA	58.681	42.857	17.34	0.00	0.00	4.92
391	1008	2.842457	GTTGGAAACTTACCCTGACGT	58.158	47.619	0.00	0.00	45.32	4.34
459	1100	0.894141	TGGAGAGAGAGCAGCTGAAC	59.106	55.000	20.43	10.27	0.00	3.18
653	1514	7.696992	ATAGCTTAAGAATTTCAAACGGGAA	57.303	32.000	6.67	0.00	0.00	3.97
726	1637	2.569059	TCTACTGAATACGGACCCTCG	58.431	52.381	0.00	0.00	0.00	4.63
765	1725	6.398234	TTTTACAATTGGACAGCTTTAGCA	57.602	33.333	10.83	0.00	45.16	3.49
766	1726	7.889589	AATTTTACAATTGGACAGCTTTAGC	57.110	32.000	10.83	0.00	34.60	3.09
769	1729	9.830975	AGTTAAATTTTACAATTGGACAGCTTT	57.169	25.926	10.83	5.15	32.57	3.51
771	1731	8.421002	ACAGTTAAATTTTACAATTGGACAGCT	58.579	29.630	10.83	0.00	32.57	4.24
949	1940	0.608856	ACCATCGCCATTGCACTTGA	60.609	50.000	0.00	0.00	37.32	3.02
990	1981	3.127533	GCGAGCATGTGTCCCACC	61.128	66.667	0.00	0.00	32.73	4.61
1051	2042	1.543941	GCCATCTTGTCGATCTCGCG	61.544	60.000	0.00	0.00	39.60	5.87
1110	2101	2.317040	TCGGTGATGTTCCTCCTATCC	58.683	52.381	0.00	0.00	0.00	2.59
1155	2146	2.033141	ATGGCACGCTTGAGCTGT	59.967	55.556	0.00	0.00	39.32	4.40
1232	2226	2.613133	CACCCTGCGTCTAGAGTAGTAC	59.387	54.545	0.00	0.00	0.00	2.73
1386	2380	8.055181	ACATTGTTGTTATGATCCTTGTAGGAT	58.945	33.333	7.93	7.93	45.42	3.24
1443	2440	1.076677	TCAAAGTCCCCTACCGTCTCT	59.923	52.381	0.00	0.00	0.00	3.10
1476	2473	4.991056	TCTTCTTCAATCTTGTCTCCAACG	59.009	41.667	0.00	0.00	0.00	4.10
1514	2511	1.434696	GTCTGCATGATTTGGGCCG	59.565	57.895	0.00	0.00	0.00	6.13
1557	2554	1.340248	CCTACGATAGCGACCACCATT	59.660	52.381	7.69	0.00	41.64	3.16
1609	2606	2.168521	CCTCGCCATTGAAGACCTTCTA	59.831	50.000	10.67	4.14	40.14	2.10
1625	2622	0.960364	TTCACCTTGGATTGCCTCGC	60.960	55.000	0.00	0.00	34.31	5.03
1669	2666	6.096705	TCAACATCACTGAAGTTTTGGTTGAT	59.903	34.615	0.00	0.00	0.00	2.57
1770	2767	4.761739	TCAATCAATGTGTTCTTGAGGGTC	59.238	41.667	0.00	0.00	36.16	4.46
1878	2875	3.308014	GACTCGGCTGCCTGAAGCT	62.308	63.158	17.92	2.89	43.06	3.74
1975	2972	1.404391	CAATGACCAGGCATCTTCAGC	59.596	52.381	0.00	0.00	0.00	4.26
2156	3264	8.818057	GTGTCTCAATTAGTGTTGTACCATATC	58.182	37.037	0.00	0.00	0.00	1.63
2162	3270	6.199531	TGAACGTGTCTCAATTAGTGTTGTAC	59.800	38.462	0.00	0.00	0.00	2.90
2163	3271	6.274579	TGAACGTGTCTCAATTAGTGTTGTA	58.725	36.000	0.00	0.00	0.00	2.41
2486	6290	5.046014	ACTGCAAGATGGAACATTCTCTAGT	60.046	40.000	0.00	0.00	40.39	2.57
2499	6374	8.044060	TCTGTCTTAAAATAACTGCAAGATGG	57.956	34.615	0.00	0.00	37.43	3.51
2516	6391	9.672086	CACCGAAATTGTTATTTTTCTGTCTTA	57.328	29.630	0.00	0.00	34.16	2.10
2517	6392	8.410141	TCACCGAAATTGTTATTTTTCTGTCTT	58.590	29.630	0.00	0.00	34.16	3.01
2518	6393	7.936584	TCACCGAAATTGTTATTTTTCTGTCT	58.063	30.769	0.00	0.00	34.16	3.41
2519	6394	8.476925	GTTCACCGAAATTGTTATTTTTCTGTC	58.523	33.333	0.00	0.00	34.16	3.51
2521	6396	7.095816	GGGTTCACCGAAATTGTTATTTTTCTG	60.096	37.037	0.00	0.00	34.16	3.02
2523	6398	6.146510	GGGGTTCACCGAAATTGTTATTTTTC	59.853	38.462	0.00	0.00	41.60	2.29
2524	6399	5.992829	GGGGTTCACCGAAATTGTTATTTTT	59.007	36.000	0.00	0.00	41.60	1.94
2527	6402	4.219725	CAGGGGTTCACCGAAATTGTTATT	59.780	41.667	0.00	0.00	41.60	1.40
2529	6404	3.150767	CAGGGGTTCACCGAAATTGTTA	58.849	45.455	0.00	0.00	41.60	2.41
2536	6411	2.075355	ATTGGCAGGGGTTCACCGAA	62.075	55.000	0.00	0.00	41.60	4.30
2538	6413	1.029947	GTATTGGCAGGGGTTCACCG	61.030	60.000	0.00	0.00	41.60	4.94
2539	6414	0.039035	TGTATTGGCAGGGGTTCACC	59.961	55.000	0.00	0.00	39.11	4.02
2541	6416	1.145945	TGTTGTATTGGCAGGGGTTCA	59.854	47.619	0.00	0.00	0.00	3.18
2542	6417	1.818674	CTGTTGTATTGGCAGGGGTTC	59.181	52.381	0.00	0.00	0.00	3.62
2543	6418	1.146982	ACTGTTGTATTGGCAGGGGTT	59.853	47.619	0.00	0.00	34.79	4.11
2544	6419	0.777446	ACTGTTGTATTGGCAGGGGT	59.223	50.000	0.00	0.00	34.79	4.95
2546	6421	6.299141	AGAATATACTGTTGTATTGGCAGGG	58.701	40.000	0.00	0.00	39.77	4.45
2547	6422	7.716998	AGAAGAATATACTGTTGTATTGGCAGG	59.283	37.037	0.00	0.00	39.77	4.85
2550	6425	7.857885	GCAAGAAGAATATACTGTTGTATTGGC	59.142	37.037	3.75	0.00	39.77	4.52
2551	6426	8.892723	TGCAAGAAGAATATACTGTTGTATTGG	58.107	33.333	0.00	0.00	39.77	3.16
2552	6427	9.926751	CTGCAAGAAGAATATACTGTTGTATTG	57.073	33.333	0.00	0.00	37.02	1.90
2553	6428	9.672673	ACTGCAAGAAGAATATACTGTTGTATT	57.327	29.630	0.00	0.00	37.72	1.89
2558	6469	9.672673	AACATACTGCAAGAAGAATATACTGTT	57.327	29.630	0.00	0.00	37.43	3.16
2560	6471	8.768955	GGAACATACTGCAAGAAGAATATACTG	58.231	37.037	0.00	0.00	37.43	2.74

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.