Multiple sequence alignment - TraesCS7A01G563800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G563800 chr7A 100.000 3435 0 0 1 3435 733609212 733612646 0.000000e+00 6344.0
1 TraesCS7A01G563800 chr7A 86.245 1345 156 7 1050 2388 733622398 733623719 0.000000e+00 1432.0
2 TraesCS7A01G563800 chr7A 97.447 235 6 0 3196 3430 733624725 733624959 5.340000e-108 401.0
3 TraesCS7A01G563800 chr7A 90.775 271 21 3 313 580 564274267 564273998 3.260000e-95 359.0
4 TraesCS7A01G563800 chr7A 76.494 251 40 13 2054 2289 733782024 733782270 6.020000e-23 119.0
5 TraesCS7A01G563800 chr7B 93.337 2041 113 12 771 2808 749536407 749534387 0.000000e+00 2994.0
6 TraesCS7A01G563800 chr7B 92.746 386 28 0 2807 3192 749534314 749533929 2.990000e-155 558.0
7 TraesCS7A01G563800 chr7B 89.669 242 22 3 3196 3435 749533859 749533619 4.310000e-79 305.0
8 TraesCS7A01G563800 chr7B 81.164 292 35 12 2871 3158 749534728 749534453 2.080000e-52 217.0
9 TraesCS7A01G563800 chr7B 94.326 141 4 3 635 772 749536704 749536565 2.690000e-51 213.0
10 TraesCS7A01G563800 chr7B 92.754 69 3 2 568 634 749536799 749536731 7.850000e-17 99.0
11 TraesCS7A01G563800 chr7B 79.562 137 25 3 2137 2273 714316306 714316173 1.010000e-15 95.3
12 TraesCS7A01G563800 chr7B 97.778 45 1 0 2229 2273 714466938 714466894 1.020000e-10 78.7
13 TraesCS7A01G563800 chr7D 95.284 1463 56 4 938 2388 633510734 633509273 0.000000e+00 2307.0
14 TraesCS7A01G563800 chr7D 92.746 386 28 0 2807 3192 633507735 633507350 2.990000e-155 558.0
15 TraesCS7A01G563800 chr7D 86.111 324 40 4 2871 3192 633509150 633508830 9.130000e-91 344.0
16 TraesCS7A01G563800 chr7D 90.612 245 17 5 3196 3435 633507281 633507038 1.540000e-83 320.0
17 TraesCS7A01G563800 chr7D 95.050 202 10 0 3230 3431 633508730 633508529 5.530000e-83 318.0
18 TraesCS7A01G563800 chr7D 88.496 113 12 1 3200 3311 633507782 633507670 5.980000e-28 135.0
19 TraesCS7A01G563800 chr7D 77.119 236 38 12 2054 2278 633393593 633393363 4.660000e-24 122.0
20 TraesCS7A01G563800 chr3D 78.026 851 152 19 1554 2388 48697241 48698072 1.420000e-138 503.0
21 TraesCS7A01G563800 chr1A 95.420 262 9 2 313 571 491425625 491425364 6.860000e-112 414.0
22 TraesCS7A01G563800 chr1A 94.048 252 13 2 312 561 531015145 531014894 6.960000e-102 381.0
23 TraesCS7A01G563800 chr4A 93.208 265 15 2 313 574 244008505 244008241 1.500000e-103 387.0
24 TraesCS7A01G563800 chr2D 92.748 262 16 2 313 571 535240031 535240292 3.240000e-100 375.0
25 TraesCS7A01G563800 chr2D 92.015 263 18 2 313 572 395940456 395940194 1.950000e-97 366.0
26 TraesCS7A01G563800 chr6D 92.337 261 16 4 314 571 444471233 444470974 5.420000e-98 368.0
27 TraesCS7A01G563800 chrUn 91.450 269 19 4 314 579 29715035 29714768 1.950000e-97 366.0
28 TraesCS7A01G563800 chr2A 92.337 261 15 5 314 571 72944090 72944348 1.950000e-97 366.0
29 TraesCS7A01G563800 chr2B 87.500 48 6 0 215 262 14965343 14965296 4.790000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G563800 chr7A 733609212 733612646 3434 False 6344.000000 6344 100.000000 1 3435 1 chr7A.!!$F1 3434
1 TraesCS7A01G563800 chr7A 733622398 733624959 2561 False 916.500000 1432 91.846000 1050 3430 2 chr7A.!!$F3 2380
2 TraesCS7A01G563800 chr7B 749533619 749536799 3180 True 731.000000 2994 90.666000 568 3435 6 chr7B.!!$R3 2867
3 TraesCS7A01G563800 chr7D 633507038 633510734 3696 True 663.666667 2307 91.383167 938 3435 6 chr7D.!!$R2 2497
4 TraesCS7A01G563800 chr3D 48697241 48698072 831 False 503.000000 503 78.026000 1554 2388 1 chr3D.!!$F1 834

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
323 324 0.031721 GTTACGGCATACTCCCTCCG 59.968 60.000 0.00 0.0 46.61 4.63 F
602 603 0.036732 TGACATGGTGGTGCTCCTTC 59.963 55.000 6.34 0.0 34.23 3.46 F
1375 1577 1.519719 CTGCTCTTTCCTCCCCTCG 59.480 63.158 0.00 0.0 0.00 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1603 1809 1.450312 CATGACCCTGAAGCCCGAC 60.450 63.158 0.00 0.00 0.0 4.79 R
2149 2364 3.367992 AGCTTCATAGTCTGCAGATCG 57.632 47.619 21.47 8.88 0.0 3.69 R
3018 4364 0.472734 ATCCCCATCCTCTTCCTCGG 60.473 60.000 0.00 0.00 0.0 4.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.705604 GTGTTGGTGTTCCACTCAAATG 58.294 45.455 0.00 0.00 44.22 2.32
22 23 3.130340 GTGTTGGTGTTCCACTCAAATGT 59.870 43.478 0.00 0.00 44.22 2.71
23 24 3.380004 TGTTGGTGTTCCACTCAAATGTC 59.620 43.478 0.00 0.00 44.22 3.06
24 25 2.217750 TGGTGTTCCACTCAAATGTCG 58.782 47.619 0.00 0.00 39.03 4.35
25 26 2.158885 TGGTGTTCCACTCAAATGTCGA 60.159 45.455 0.00 0.00 39.03 4.20
26 27 3.074412 GGTGTTCCACTCAAATGTCGAT 58.926 45.455 0.00 0.00 34.40 3.59
27 28 3.502211 GGTGTTCCACTCAAATGTCGATT 59.498 43.478 0.00 0.00 34.40 3.34
28 29 4.023193 GGTGTTCCACTCAAATGTCGATTT 60.023 41.667 0.00 0.00 34.40 2.17
29 30 5.147162 GTGTTCCACTCAAATGTCGATTTC 58.853 41.667 0.00 0.00 28.65 2.17
30 31 4.215399 TGTTCCACTCAAATGTCGATTTCC 59.785 41.667 0.00 0.00 28.65 3.13
31 32 4.286297 TCCACTCAAATGTCGATTTCCT 57.714 40.909 0.00 0.00 28.65 3.36
32 33 4.651778 TCCACTCAAATGTCGATTTCCTT 58.348 39.130 0.00 0.00 28.65 3.36
33 34 4.455533 TCCACTCAAATGTCGATTTCCTTG 59.544 41.667 0.00 0.00 28.65 3.61
34 35 4.161333 CACTCAAATGTCGATTTCCTTGC 58.839 43.478 0.00 0.00 28.65 4.01
35 36 3.120199 ACTCAAATGTCGATTTCCTTGCG 60.120 43.478 0.00 0.00 28.65 4.85
36 37 2.161410 TCAAATGTCGATTTCCTTGCGG 59.839 45.455 0.00 0.00 28.65 5.69
37 38 1.094785 AATGTCGATTTCCTTGCGGG 58.905 50.000 0.00 0.00 0.00 6.13
38 39 0.748005 ATGTCGATTTCCTTGCGGGG 60.748 55.000 0.00 0.00 35.33 5.73
39 40 2.437716 TCGATTTCCTTGCGGGGC 60.438 61.111 0.00 0.00 35.33 5.80
40 41 3.876198 CGATTTCCTTGCGGGGCG 61.876 66.667 0.00 0.00 35.33 6.13
41 42 3.518068 GATTTCCTTGCGGGGCGG 61.518 66.667 0.00 0.00 35.33 6.13
76 77 4.257654 TGCTCCCGTGGGCGAAAA 62.258 61.111 0.00 0.00 41.33 2.29
77 78 3.431725 GCTCCCGTGGGCGAAAAG 61.432 66.667 0.00 0.00 41.33 2.27
78 79 2.746277 CTCCCGTGGGCGAAAAGG 60.746 66.667 0.00 0.00 41.33 3.11
79 80 4.338710 TCCCGTGGGCGAAAAGGG 62.339 66.667 0.00 0.53 43.32 3.95
81 82 4.653888 CCGTGGGCGAAAAGGGGT 62.654 66.667 0.00 0.00 41.33 4.95
82 83 3.361977 CGTGGGCGAAAAGGGGTG 61.362 66.667 0.00 0.00 41.33 4.61
83 84 2.114411 GTGGGCGAAAAGGGGTGA 59.886 61.111 0.00 0.00 0.00 4.02
84 85 1.971695 GTGGGCGAAAAGGGGTGAG 60.972 63.158 0.00 0.00 0.00 3.51
85 86 2.150719 TGGGCGAAAAGGGGTGAGA 61.151 57.895 0.00 0.00 0.00 3.27
86 87 1.377333 GGGCGAAAAGGGGTGAGAG 60.377 63.158 0.00 0.00 0.00 3.20
87 88 1.377333 GGCGAAAAGGGGTGAGAGG 60.377 63.158 0.00 0.00 0.00 3.69
88 89 2.041115 GCGAAAAGGGGTGAGAGGC 61.041 63.158 0.00 0.00 0.00 4.70
89 90 1.679898 CGAAAAGGGGTGAGAGGCT 59.320 57.895 0.00 0.00 0.00 4.58
90 91 0.674895 CGAAAAGGGGTGAGAGGCTG 60.675 60.000 0.00 0.00 0.00 4.85
91 92 0.962855 GAAAAGGGGTGAGAGGCTGC 60.963 60.000 0.00 0.00 0.00 5.25
92 93 2.432174 AAAAGGGGTGAGAGGCTGCC 62.432 60.000 11.65 11.65 0.00 4.85
93 94 4.664267 AGGGGTGAGAGGCTGCCA 62.664 66.667 22.65 0.00 0.00 4.92
94 95 4.416738 GGGGTGAGAGGCTGCCAC 62.417 72.222 22.65 15.46 0.00 5.01
96 97 4.767255 GGTGAGAGGCTGCCACCG 62.767 72.222 22.65 0.00 40.61 4.94
97 98 4.008933 GTGAGAGGCTGCCACCGT 62.009 66.667 22.65 0.00 33.69 4.83
98 99 3.695606 TGAGAGGCTGCCACCGTC 61.696 66.667 22.65 9.59 33.69 4.79
99 100 3.386237 GAGAGGCTGCCACCGTCT 61.386 66.667 22.65 14.69 33.69 4.18
100 101 3.363844 GAGAGGCTGCCACCGTCTC 62.364 68.421 22.65 19.22 33.69 3.36
101 102 3.386237 GAGGCTGCCACCGTCTCT 61.386 66.667 22.65 0.00 33.69 3.10
102 103 2.037367 AGGCTGCCACCGTCTCTA 59.963 61.111 22.65 0.00 33.69 2.43
103 104 1.381872 AGGCTGCCACCGTCTCTAT 60.382 57.895 22.65 0.00 33.69 1.98
104 105 0.978146 AGGCTGCCACCGTCTCTATT 60.978 55.000 22.65 0.00 33.69 1.73
105 106 0.530870 GGCTGCCACCGTCTCTATTC 60.531 60.000 15.17 0.00 0.00 1.75
106 107 0.461961 GCTGCCACCGTCTCTATTCT 59.538 55.000 0.00 0.00 0.00 2.40
107 108 1.681793 GCTGCCACCGTCTCTATTCTA 59.318 52.381 0.00 0.00 0.00 2.10
108 109 2.544069 GCTGCCACCGTCTCTATTCTAC 60.544 54.545 0.00 0.00 0.00 2.59
109 110 2.952978 CTGCCACCGTCTCTATTCTACT 59.047 50.000 0.00 0.00 0.00 2.57
110 111 2.688446 TGCCACCGTCTCTATTCTACTG 59.312 50.000 0.00 0.00 0.00 2.74
111 112 2.544069 GCCACCGTCTCTATTCTACTGC 60.544 54.545 0.00 0.00 0.00 4.40
112 113 2.952978 CCACCGTCTCTATTCTACTGCT 59.047 50.000 0.00 0.00 0.00 4.24
113 114 4.135306 CCACCGTCTCTATTCTACTGCTA 58.865 47.826 0.00 0.00 0.00 3.49
114 115 4.023878 CCACCGTCTCTATTCTACTGCTAC 60.024 50.000 0.00 0.00 0.00 3.58
115 116 3.808726 ACCGTCTCTATTCTACTGCTACG 59.191 47.826 0.00 0.00 0.00 3.51
116 117 4.056740 CCGTCTCTATTCTACTGCTACGA 58.943 47.826 0.00 0.00 0.00 3.43
117 118 4.691685 CCGTCTCTATTCTACTGCTACGAT 59.308 45.833 0.00 0.00 0.00 3.73
118 119 5.868258 CCGTCTCTATTCTACTGCTACGATA 59.132 44.000 0.00 0.00 0.00 2.92
119 120 6.535865 CCGTCTCTATTCTACTGCTACGATAT 59.464 42.308 0.00 0.00 0.00 1.63
120 121 7.395645 CGTCTCTATTCTACTGCTACGATATG 58.604 42.308 0.00 0.00 0.00 1.78
121 122 7.275999 CGTCTCTATTCTACTGCTACGATATGA 59.724 40.741 0.00 0.00 0.00 2.15
122 123 8.937884 GTCTCTATTCTACTGCTACGATATGAA 58.062 37.037 0.00 0.00 0.00 2.57
123 124 9.503399 TCTCTATTCTACTGCTACGATATGAAA 57.497 33.333 0.00 0.00 0.00 2.69
128 129 8.803201 TTCTACTGCTACGATATGAAATGAAG 57.197 34.615 0.00 0.00 0.00 3.02
129 130 7.371159 TCTACTGCTACGATATGAAATGAAGG 58.629 38.462 0.00 0.00 0.00 3.46
130 131 6.161855 ACTGCTACGATATGAAATGAAGGA 57.838 37.500 0.00 0.00 0.00 3.36
131 132 6.763355 ACTGCTACGATATGAAATGAAGGAT 58.237 36.000 0.00 0.00 0.00 3.24
132 133 7.220030 ACTGCTACGATATGAAATGAAGGATT 58.780 34.615 0.00 0.00 0.00 3.01
133 134 7.172190 ACTGCTACGATATGAAATGAAGGATTG 59.828 37.037 0.00 0.00 0.00 2.67
134 135 6.992123 TGCTACGATATGAAATGAAGGATTGT 59.008 34.615 0.00 0.00 0.00 2.71
135 136 7.041848 TGCTACGATATGAAATGAAGGATTGTG 60.042 37.037 0.00 0.00 0.00 3.33
136 137 7.041780 GCTACGATATGAAATGAAGGATTGTGT 60.042 37.037 0.00 0.00 0.00 3.72
137 138 9.476202 CTACGATATGAAATGAAGGATTGTGTA 57.524 33.333 0.00 0.00 0.00 2.90
138 139 8.370493 ACGATATGAAATGAAGGATTGTGTAG 57.630 34.615 0.00 0.00 0.00 2.74
139 140 7.041780 ACGATATGAAATGAAGGATTGTGTAGC 60.042 37.037 0.00 0.00 0.00 3.58
140 141 4.944962 TGAAATGAAGGATTGTGTAGCG 57.055 40.909 0.00 0.00 0.00 4.26
141 142 3.689161 TGAAATGAAGGATTGTGTAGCGG 59.311 43.478 0.00 0.00 0.00 5.52
142 143 1.668419 ATGAAGGATTGTGTAGCGGC 58.332 50.000 0.00 0.00 0.00 6.53
143 144 0.323302 TGAAGGATTGTGTAGCGGCA 59.677 50.000 1.45 0.00 0.00 5.69
144 145 1.271108 TGAAGGATTGTGTAGCGGCAA 60.271 47.619 1.45 0.00 0.00 4.52
145 146 1.130561 GAAGGATTGTGTAGCGGCAAC 59.869 52.381 1.45 0.00 0.00 4.17
146 147 0.036164 AGGATTGTGTAGCGGCAACA 59.964 50.000 1.45 0.50 0.00 3.33
147 148 0.447801 GGATTGTGTAGCGGCAACAG 59.552 55.000 1.45 0.00 0.00 3.16
148 149 1.156736 GATTGTGTAGCGGCAACAGT 58.843 50.000 1.45 0.30 0.00 3.55
149 150 2.343101 GATTGTGTAGCGGCAACAGTA 58.657 47.619 1.45 0.00 0.00 2.74
150 151 1.790755 TTGTGTAGCGGCAACAGTAG 58.209 50.000 1.45 0.00 0.00 2.57
151 152 0.037697 TGTGTAGCGGCAACAGTAGG 60.038 55.000 1.45 0.00 0.00 3.18
152 153 0.245539 GTGTAGCGGCAACAGTAGGA 59.754 55.000 1.45 0.00 0.00 2.94
153 154 1.134788 GTGTAGCGGCAACAGTAGGAT 60.135 52.381 1.45 0.00 0.00 3.24
154 155 1.134818 TGTAGCGGCAACAGTAGGATG 60.135 52.381 1.45 0.00 0.00 3.51
155 156 1.134788 GTAGCGGCAACAGTAGGATGT 60.135 52.381 1.45 0.00 33.96 3.06
156 157 1.191535 AGCGGCAACAGTAGGATGTA 58.808 50.000 1.45 0.00 31.70 2.29
157 158 1.553248 AGCGGCAACAGTAGGATGTAA 59.447 47.619 1.45 0.00 31.70 2.41
158 159 2.027561 AGCGGCAACAGTAGGATGTAAA 60.028 45.455 1.45 0.00 31.70 2.01
159 160 2.095372 GCGGCAACAGTAGGATGTAAAC 59.905 50.000 0.00 0.00 31.70 2.01
160 161 2.676342 CGGCAACAGTAGGATGTAAACC 59.324 50.000 0.00 0.00 31.70 3.27
161 162 3.681593 GGCAACAGTAGGATGTAAACCA 58.318 45.455 0.00 0.00 31.70 3.67
162 163 3.689649 GGCAACAGTAGGATGTAAACCAG 59.310 47.826 0.00 0.00 31.70 4.00
163 164 3.689649 GCAACAGTAGGATGTAAACCAGG 59.310 47.826 0.00 0.00 31.70 4.45
164 165 4.806286 GCAACAGTAGGATGTAAACCAGGT 60.806 45.833 0.00 0.00 31.70 4.00
165 166 4.820894 ACAGTAGGATGTAAACCAGGTC 57.179 45.455 0.00 0.00 0.00 3.85
166 167 3.518303 ACAGTAGGATGTAAACCAGGTCC 59.482 47.826 0.00 0.00 0.00 4.46
167 168 3.113043 AGTAGGATGTAAACCAGGTCCC 58.887 50.000 0.00 0.00 0.00 4.46
168 169 0.909623 AGGATGTAAACCAGGTCCCG 59.090 55.000 0.00 0.00 0.00 5.14
169 170 0.616891 GGATGTAAACCAGGTCCCGT 59.383 55.000 0.00 0.00 0.00 5.28
170 171 1.003928 GGATGTAAACCAGGTCCCGTT 59.996 52.381 0.00 0.00 0.00 4.44
171 172 2.553685 GGATGTAAACCAGGTCCCGTTT 60.554 50.000 9.12 9.12 36.26 3.60
172 173 3.307621 GGATGTAAACCAGGTCCCGTTTA 60.308 47.826 0.00 7.50 34.22 2.01
173 174 3.853355 TGTAAACCAGGTCCCGTTTAA 57.147 42.857 11.62 3.35 36.49 1.52
174 175 4.162040 TGTAAACCAGGTCCCGTTTAAA 57.838 40.909 11.62 5.94 36.49 1.52
175 176 3.882288 TGTAAACCAGGTCCCGTTTAAAC 59.118 43.478 8.35 8.35 36.49 2.01
176 177 1.985473 AACCAGGTCCCGTTTAAACC 58.015 50.000 12.66 0.00 0.00 3.27
177 178 0.111061 ACCAGGTCCCGTTTAAACCC 59.889 55.000 12.66 7.87 33.33 4.11
178 179 0.110869 CCAGGTCCCGTTTAAACCCA 59.889 55.000 12.66 0.00 33.33 4.51
179 180 1.241165 CAGGTCCCGTTTAAACCCAC 58.759 55.000 12.66 6.59 33.33 4.61
180 181 1.142936 AGGTCCCGTTTAAACCCACT 58.857 50.000 12.66 1.98 33.33 4.00
181 182 2.038820 CAGGTCCCGTTTAAACCCACTA 59.961 50.000 12.66 0.00 33.33 2.74
182 183 2.303890 AGGTCCCGTTTAAACCCACTAG 59.696 50.000 12.66 0.00 33.33 2.57
183 184 2.038952 GGTCCCGTTTAAACCCACTAGT 59.961 50.000 12.66 0.00 0.00 2.57
184 185 3.069289 GTCCCGTTTAAACCCACTAGTG 58.931 50.000 16.34 16.34 0.00 2.74
185 186 2.971330 TCCCGTTTAAACCCACTAGTGA 59.029 45.455 24.68 0.18 0.00 3.41
186 187 3.583966 TCCCGTTTAAACCCACTAGTGAT 59.416 43.478 24.68 9.08 0.00 3.06
187 188 3.937079 CCCGTTTAAACCCACTAGTGATC 59.063 47.826 24.68 1.59 0.00 2.92
188 189 4.323257 CCCGTTTAAACCCACTAGTGATCT 60.323 45.833 24.68 8.03 0.00 2.75
189 190 5.105228 CCCGTTTAAACCCACTAGTGATCTA 60.105 44.000 24.68 7.08 0.00 1.98
190 191 6.400568 CCGTTTAAACCCACTAGTGATCTAA 58.599 40.000 24.68 12.25 0.00 2.10
191 192 6.875195 CCGTTTAAACCCACTAGTGATCTAAA 59.125 38.462 24.68 16.66 0.00 1.85
192 193 7.388500 CCGTTTAAACCCACTAGTGATCTAAAA 59.612 37.037 24.68 14.61 0.00 1.52
193 194 8.440833 CGTTTAAACCCACTAGTGATCTAAAAG 58.559 37.037 24.68 17.01 0.00 2.27
194 195 9.281371 GTTTAAACCCACTAGTGATCTAAAAGT 57.719 33.333 24.68 5.40 0.00 2.66
195 196 9.856162 TTTAAACCCACTAGTGATCTAAAAGTT 57.144 29.630 24.68 10.53 0.00 2.66
196 197 7.981102 AAACCCACTAGTGATCTAAAAGTTC 57.019 36.000 24.68 0.00 0.00 3.01
197 198 6.681729 ACCCACTAGTGATCTAAAAGTTCA 57.318 37.500 24.68 0.00 0.00 3.18
198 199 7.074653 ACCCACTAGTGATCTAAAAGTTCAA 57.925 36.000 24.68 0.00 0.00 2.69
199 200 7.690256 ACCCACTAGTGATCTAAAAGTTCAAT 58.310 34.615 24.68 0.00 0.00 2.57
200 201 8.822805 ACCCACTAGTGATCTAAAAGTTCAATA 58.177 33.333 24.68 0.00 0.00 1.90
201 202 9.667107 CCCACTAGTGATCTAAAAGTTCAATAA 57.333 33.333 24.68 0.00 28.20 1.40
217 218 9.810545 AAGTTCAATAATTTGTTTTTCCGAAGA 57.189 25.926 0.00 0.00 34.32 2.87
218 219 9.810545 AGTTCAATAATTTGTTTTTCCGAAGAA 57.189 25.926 0.00 0.00 34.32 2.52
231 232 7.753309 TTTTCCGAAGAAAATGAACTATGGA 57.247 32.000 0.00 0.00 44.99 3.41
232 233 6.985188 TTCCGAAGAAAATGAACTATGGAG 57.015 37.500 0.00 0.00 0.00 3.86
233 234 4.876107 TCCGAAGAAAATGAACTATGGAGC 59.124 41.667 0.00 0.00 0.00 4.70
234 235 4.878397 CCGAAGAAAATGAACTATGGAGCT 59.122 41.667 0.00 0.00 0.00 4.09
235 236 6.049149 CCGAAGAAAATGAACTATGGAGCTA 58.951 40.000 0.00 0.00 0.00 3.32
236 237 6.201806 CCGAAGAAAATGAACTATGGAGCTAG 59.798 42.308 0.00 0.00 0.00 3.42
237 238 6.292596 CGAAGAAAATGAACTATGGAGCTAGC 60.293 42.308 6.62 6.62 0.00 3.42
238 239 6.245890 AGAAAATGAACTATGGAGCTAGCT 57.754 37.500 19.45 19.45 0.00 3.32
239 240 7.366847 AGAAAATGAACTATGGAGCTAGCTA 57.633 36.000 19.38 2.78 0.00 3.32
240 241 7.796054 AGAAAATGAACTATGGAGCTAGCTAA 58.204 34.615 19.38 9.84 0.00 3.09
241 242 8.267894 AGAAAATGAACTATGGAGCTAGCTAAA 58.732 33.333 19.38 9.43 0.00 1.85
242 243 8.443953 AAAATGAACTATGGAGCTAGCTAAAG 57.556 34.615 19.38 14.43 0.00 1.85
243 244 6.739331 ATGAACTATGGAGCTAGCTAAAGT 57.261 37.500 19.38 15.07 0.00 2.66
244 245 6.546428 TGAACTATGGAGCTAGCTAAAGTT 57.454 37.500 19.38 21.83 0.00 2.66
245 246 7.655521 TGAACTATGGAGCTAGCTAAAGTTA 57.344 36.000 19.38 10.30 0.00 2.24
246 247 8.074613 TGAACTATGGAGCTAGCTAAAGTTAA 57.925 34.615 19.38 14.19 0.00 2.01
247 248 7.980099 TGAACTATGGAGCTAGCTAAAGTTAAC 59.020 37.037 19.38 12.96 0.00 2.01
248 249 7.663043 ACTATGGAGCTAGCTAAAGTTAACT 57.337 36.000 19.38 1.12 0.00 2.24
249 250 8.763984 ACTATGGAGCTAGCTAAAGTTAACTA 57.236 34.615 19.38 0.22 0.00 2.24
250 251 9.198475 ACTATGGAGCTAGCTAAAGTTAACTAA 57.802 33.333 19.38 0.00 0.00 2.24
251 252 9.685828 CTATGGAGCTAGCTAAAGTTAACTAAG 57.314 37.037 19.38 10.65 0.00 2.18
252 253 6.338937 TGGAGCTAGCTAAAGTTAACTAAGC 58.661 40.000 24.99 24.99 36.13 3.09
253 254 5.459434 GGAGCTAGCTAAAGTTAACTAAGCG 59.541 44.000 25.51 18.05 39.03 4.68
254 255 5.349809 AGCTAGCTAAAGTTAACTAAGCGG 58.650 41.667 25.51 22.98 39.03 5.52
255 256 4.025896 GCTAGCTAAAGTTAACTAAGCGGC 60.026 45.833 26.86 26.86 39.03 6.53
256 257 3.934068 AGCTAAAGTTAACTAAGCGGCA 58.066 40.909 25.51 3.58 39.03 5.69
257 258 3.683340 AGCTAAAGTTAACTAAGCGGCAC 59.317 43.478 25.51 9.37 39.03 5.01
258 259 3.683340 GCTAAAGTTAACTAAGCGGCACT 59.317 43.478 20.79 0.00 0.00 4.40
259 260 4.153655 GCTAAAGTTAACTAAGCGGCACTT 59.846 41.667 20.79 7.59 42.76 3.16
260 261 4.483476 AAAGTTAACTAAGCGGCACTTG 57.517 40.909 8.92 0.00 39.58 3.16
261 262 1.804748 AGTTAACTAAGCGGCACTTGC 59.195 47.619 6.26 0.00 39.58 4.01
262 263 0.793861 TTAACTAAGCGGCACTTGCG 59.206 50.000 1.45 0.00 43.26 4.85
263 264 0.038067 TAACTAAGCGGCACTTGCGA 60.038 50.000 1.45 0.00 43.26 5.10
264 265 0.882927 AACTAAGCGGCACTTGCGAA 60.883 50.000 1.45 0.00 43.26 4.70
265 266 1.132640 CTAAGCGGCACTTGCGAAC 59.867 57.895 1.45 0.00 43.26 3.95
266 267 2.240612 CTAAGCGGCACTTGCGAACC 62.241 60.000 1.45 0.00 43.26 3.62
269 270 4.025401 CGGCACTTGCGAACCCAC 62.025 66.667 0.00 0.00 43.26 4.61
270 271 2.594592 GGCACTTGCGAACCCACT 60.595 61.111 0.00 0.00 43.26 4.00
271 272 2.193536 GGCACTTGCGAACCCACTT 61.194 57.895 0.00 0.00 43.26 3.16
272 273 0.887387 GGCACTTGCGAACCCACTTA 60.887 55.000 0.00 0.00 43.26 2.24
273 274 1.165270 GCACTTGCGAACCCACTTAT 58.835 50.000 0.00 0.00 0.00 1.73
274 275 1.539827 GCACTTGCGAACCCACTTATT 59.460 47.619 0.00 0.00 0.00 1.40
275 276 2.745281 GCACTTGCGAACCCACTTATTA 59.255 45.455 0.00 0.00 0.00 0.98
276 277 3.377172 GCACTTGCGAACCCACTTATTAT 59.623 43.478 0.00 0.00 0.00 1.28
277 278 4.142469 GCACTTGCGAACCCACTTATTATT 60.142 41.667 0.00 0.00 0.00 1.40
278 279 5.621329 GCACTTGCGAACCCACTTATTATTT 60.621 40.000 0.00 0.00 0.00 1.40
279 280 5.799936 CACTTGCGAACCCACTTATTATTTG 59.200 40.000 0.00 0.00 0.00 2.32
280 281 4.364415 TGCGAACCCACTTATTATTTGC 57.636 40.909 0.00 0.00 0.00 3.68
281 282 3.129638 TGCGAACCCACTTATTATTTGCC 59.870 43.478 0.00 0.00 0.00 4.52
282 283 3.129638 GCGAACCCACTTATTATTTGCCA 59.870 43.478 0.00 0.00 0.00 4.92
283 284 4.202111 GCGAACCCACTTATTATTTGCCAT 60.202 41.667 0.00 0.00 0.00 4.40
284 285 5.681179 GCGAACCCACTTATTATTTGCCATT 60.681 40.000 0.00 0.00 0.00 3.16
285 286 6.337356 CGAACCCACTTATTATTTGCCATTT 58.663 36.000 0.00 0.00 0.00 2.32
286 287 7.484975 CGAACCCACTTATTATTTGCCATTTA 58.515 34.615 0.00 0.00 0.00 1.40
287 288 8.141268 CGAACCCACTTATTATTTGCCATTTAT 58.859 33.333 0.00 0.00 0.00 1.40
297 298 7.954666 TTATTTGCCATTTATATCCCTAGGC 57.045 36.000 2.05 0.00 40.93 3.93
298 299 3.627395 TGCCATTTATATCCCTAGGCG 57.373 47.619 2.05 0.00 43.35 5.52
299 300 2.238646 TGCCATTTATATCCCTAGGCGG 59.761 50.000 2.05 0.00 43.35 6.13
300 301 2.919228 CCATTTATATCCCTAGGCGGC 58.081 52.381 2.05 0.00 0.00 6.53
301 302 2.238646 CCATTTATATCCCTAGGCGGCA 59.761 50.000 13.08 0.00 0.00 5.69
302 303 3.308117 CCATTTATATCCCTAGGCGGCAA 60.308 47.826 13.08 0.00 0.00 4.52
303 304 3.695830 TTTATATCCCTAGGCGGCAAG 57.304 47.619 13.08 0.00 0.00 4.01
304 305 1.568504 TATATCCCTAGGCGGCAAGG 58.431 55.000 13.08 12.36 0.00 3.61
305 306 0.473886 ATATCCCTAGGCGGCAAGGT 60.474 55.000 13.08 4.92 0.00 3.50
306 307 0.693092 TATCCCTAGGCGGCAAGGTT 60.693 55.000 13.08 6.26 0.00 3.50
307 308 0.693092 ATCCCTAGGCGGCAAGGTTA 60.693 55.000 13.08 7.36 0.00 2.85
308 309 1.153229 CCCTAGGCGGCAAGGTTAC 60.153 63.158 13.08 0.00 0.00 2.50
309 310 1.520787 CCTAGGCGGCAAGGTTACG 60.521 63.158 13.08 0.00 0.00 3.18
310 311 1.520787 CTAGGCGGCAAGGTTACGG 60.521 63.158 13.08 0.00 0.00 4.02
313 314 3.131478 GCGGCAAGGTTACGGCAT 61.131 61.111 0.00 0.00 32.85 4.40
314 315 1.816259 GCGGCAAGGTTACGGCATA 60.816 57.895 0.00 0.00 32.85 3.14
315 316 2.011453 CGGCAAGGTTACGGCATAC 58.989 57.895 0.00 0.00 0.00 2.39
316 317 0.461339 CGGCAAGGTTACGGCATACT 60.461 55.000 0.00 0.00 0.00 2.12
317 318 1.296727 GGCAAGGTTACGGCATACTC 58.703 55.000 0.00 0.00 0.00 2.59
318 319 1.296727 GCAAGGTTACGGCATACTCC 58.703 55.000 0.00 0.00 0.00 3.85
319 320 1.949465 CAAGGTTACGGCATACTCCC 58.051 55.000 0.00 0.00 0.00 4.30
320 321 1.485066 CAAGGTTACGGCATACTCCCT 59.515 52.381 0.00 0.00 0.00 4.20
321 322 1.411041 AGGTTACGGCATACTCCCTC 58.589 55.000 0.00 0.00 0.00 4.30
322 323 0.391966 GGTTACGGCATACTCCCTCC 59.608 60.000 0.00 0.00 0.00 4.30
323 324 0.031721 GTTACGGCATACTCCCTCCG 59.968 60.000 0.00 0.00 46.61 4.63
325 326 3.217231 CGGCATACTCCCTCCGTT 58.783 61.111 0.00 0.00 37.33 4.44
326 327 1.520666 CGGCATACTCCCTCCGTTT 59.479 57.895 0.00 0.00 37.33 3.60
327 328 0.107848 CGGCATACTCCCTCCGTTTT 60.108 55.000 0.00 0.00 37.33 2.43
328 329 1.677820 CGGCATACTCCCTCCGTTTTT 60.678 52.381 0.00 0.00 37.33 1.94
350 351 6.371809 TTTTACTCCGCATATTAGCTTTGG 57.628 37.500 0.00 0.00 0.00 3.28
351 352 3.560636 ACTCCGCATATTAGCTTTGGT 57.439 42.857 0.00 0.00 0.00 3.67
352 353 3.467803 ACTCCGCATATTAGCTTTGGTC 58.532 45.455 0.00 0.00 0.00 4.02
353 354 3.118408 ACTCCGCATATTAGCTTTGGTCA 60.118 43.478 0.00 0.00 0.00 4.02
354 355 3.876914 CTCCGCATATTAGCTTTGGTCAA 59.123 43.478 0.00 0.00 0.00 3.18
355 356 4.265893 TCCGCATATTAGCTTTGGTCAAA 58.734 39.130 0.00 0.00 0.00 2.69
377 378 7.812309 AAAGTCAAGCTTTGTAAACTTTGAC 57.188 32.000 14.76 14.88 45.00 3.18
378 379 5.569413 AGTCAAGCTTTGTAAACTTTGACG 58.431 37.500 0.00 0.00 32.07 4.35
379 380 5.353123 AGTCAAGCTTTGTAAACTTTGACGA 59.647 36.000 0.00 0.00 32.07 4.20
380 381 6.025280 GTCAAGCTTTGTAAACTTTGACGAA 58.975 36.000 0.00 0.00 0.00 3.85
381 382 6.525280 GTCAAGCTTTGTAAACTTTGACGAAA 59.475 34.615 0.00 0.00 0.00 3.46
382 383 7.220108 GTCAAGCTTTGTAAACTTTGACGAAAT 59.780 33.333 0.00 0.00 0.00 2.17
383 384 7.757624 TCAAGCTTTGTAAACTTTGACGAAATT 59.242 29.630 0.00 0.00 0.00 1.82
384 385 8.379902 CAAGCTTTGTAAACTTTGACGAAATTT 58.620 29.630 0.00 0.00 0.00 1.82
385 386 9.575783 AAGCTTTGTAAACTTTGACGAAATTTA 57.424 25.926 0.00 0.00 0.00 1.40
386 387 9.744468 AGCTTTGTAAACTTTGACGAAATTTAT 57.256 25.926 0.00 0.00 0.00 1.40
463 464 8.669946 TTAAACATACTTTCGCATCATATGGA 57.330 30.769 2.13 0.00 0.00 3.41
464 465 7.750229 AAACATACTTTCGCATCATATGGAT 57.250 32.000 2.13 0.00 36.39 3.41
465 466 7.750229 AACATACTTTCGCATCATATGGATT 57.250 32.000 2.13 0.00 32.57 3.01
466 467 7.750229 ACATACTTTCGCATCATATGGATTT 57.250 32.000 2.13 0.00 32.57 2.17
467 468 7.587629 ACATACTTTCGCATCATATGGATTTG 58.412 34.615 2.13 0.00 32.57 2.32
468 469 7.229306 ACATACTTTCGCATCATATGGATTTGT 59.771 33.333 2.13 0.00 32.57 2.83
469 470 6.455360 ACTTTCGCATCATATGGATTTGTT 57.545 33.333 2.13 0.00 32.57 2.83
470 471 7.566760 ACTTTCGCATCATATGGATTTGTTA 57.433 32.000 2.13 0.00 32.57 2.41
471 472 8.169977 ACTTTCGCATCATATGGATTTGTTAT 57.830 30.769 2.13 0.00 32.57 1.89
472 473 8.077991 ACTTTCGCATCATATGGATTTGTTATG 58.922 33.333 2.13 0.00 32.57 1.90
473 474 6.499234 TCGCATCATATGGATTTGTTATGG 57.501 37.500 2.13 0.00 32.57 2.74
474 475 6.003326 TCGCATCATATGGATTTGTTATGGT 58.997 36.000 2.13 0.00 32.57 3.55
475 476 7.164803 TCGCATCATATGGATTTGTTATGGTA 58.835 34.615 2.13 0.00 32.57 3.25
476 477 7.663493 TCGCATCATATGGATTTGTTATGGTAA 59.337 33.333 2.13 0.00 32.57 2.85
477 478 8.296000 CGCATCATATGGATTTGTTATGGTAAA 58.704 33.333 2.13 0.00 32.57 2.01
533 534 7.639113 ACTTTATGAAGTTTGACTTTGGTCA 57.361 32.000 0.00 0.00 45.01 4.02
534 535 8.062065 ACTTTATGAAGTTTGACTTTGGTCAA 57.938 30.769 7.38 7.38 44.64 3.18
535 536 7.973944 ACTTTATGAAGTTTGACTTTGGTCAAC 59.026 33.333 10.52 7.06 44.64 3.18
546 547 6.985188 GACTTTGGTCAACTCTATTATGCA 57.015 37.500 0.00 0.00 41.75 3.96
547 548 6.992063 ACTTTGGTCAACTCTATTATGCAG 57.008 37.500 0.00 0.00 0.00 4.41
548 549 6.711277 ACTTTGGTCAACTCTATTATGCAGA 58.289 36.000 0.00 0.00 0.00 4.26
549 550 6.820656 ACTTTGGTCAACTCTATTATGCAGAG 59.179 38.462 0.00 0.00 44.28 3.35
566 567 6.249035 TGCAGAGTAAATAAAAACGAAGGG 57.751 37.500 0.00 0.00 0.00 3.95
567 568 5.998981 TGCAGAGTAAATAAAAACGAAGGGA 59.001 36.000 0.00 0.00 0.00 4.20
568 569 6.148811 TGCAGAGTAAATAAAAACGAAGGGAG 59.851 38.462 0.00 0.00 0.00 4.30
569 570 6.148976 GCAGAGTAAATAAAAACGAAGGGAGT 59.851 38.462 0.00 0.00 0.00 3.85
570 571 7.332678 GCAGAGTAAATAAAAACGAAGGGAGTA 59.667 37.037 0.00 0.00 0.00 2.59
571 572 9.379791 CAGAGTAAATAAAAACGAAGGGAGTAT 57.620 33.333 0.00 0.00 0.00 2.12
580 581 8.713737 AAAAACGAAGGGAGTATATAGTGTTC 57.286 34.615 0.00 0.00 0.00 3.18
581 582 7.657023 AAACGAAGGGAGTATATAGTGTTCT 57.343 36.000 0.00 0.00 0.00 3.01
582 583 7.657023 AACGAAGGGAGTATATAGTGTTCTT 57.343 36.000 0.00 0.00 0.00 2.52
583 584 7.657023 ACGAAGGGAGTATATAGTGTTCTTT 57.343 36.000 0.00 0.00 0.00 2.52
584 585 7.490000 ACGAAGGGAGTATATAGTGTTCTTTG 58.510 38.462 0.00 3.24 0.00 2.77
585 586 7.341256 ACGAAGGGAGTATATAGTGTTCTTTGA 59.659 37.037 13.20 0.00 0.00 2.69
586 587 7.648510 CGAAGGGAGTATATAGTGTTCTTTGAC 59.351 40.741 0.00 0.00 0.00 3.18
587 588 7.973048 AGGGAGTATATAGTGTTCTTTGACA 57.027 36.000 0.00 0.00 0.00 3.58
602 603 0.036732 TGACATGGTGGTGCTCCTTC 59.963 55.000 6.34 0.00 34.23 3.46
840 1029 2.990066 ACTAGCAGTCAGGGTATTGC 57.010 50.000 0.00 0.00 36.83 3.56
848 1037 4.511826 GCAGTCAGGGTATTGCTGTAATAC 59.488 45.833 17.10 17.10 46.78 1.89
1210 1412 3.316573 CTCCTTCCTCCGCCGCTTT 62.317 63.158 0.00 0.00 0.00 3.51
1363 1565 2.355193 GGCCGACTTCTCCTGCTCT 61.355 63.158 0.00 0.00 0.00 4.09
1375 1577 1.519719 CTGCTCTTTCCTCCCCTCG 59.480 63.158 0.00 0.00 0.00 4.63
1474 1676 2.669569 GTGTGCGACCCACTGCAT 60.670 61.111 0.00 0.00 44.92 3.96
1540 1742 2.366916 CCTAACCAGGGAGCTAGATGTG 59.633 54.545 0.00 0.00 38.41 3.21
1566 1772 2.451493 TCACCCCTTCCTTGCCCA 60.451 61.111 0.00 0.00 0.00 5.36
1603 1809 3.554692 GACAATGCCGACGCTCCG 61.555 66.667 0.00 0.00 35.36 4.63
1666 1872 3.552684 CGCTGATCCTCTTCATCTTCTCC 60.553 52.174 0.00 0.00 0.00 3.71
1744 1950 3.296709 GATGGCAGGACACGTCGGT 62.297 63.158 0.00 0.00 0.00 4.69
2149 2364 7.913674 ATTCCACTTCAACTCTTATTCACTC 57.086 36.000 0.00 0.00 0.00 3.51
2214 2429 0.320374 TTGTACTTCTCCCCGCACAG 59.680 55.000 0.00 0.00 0.00 3.66
2241 2456 2.306847 GTATGATGGTTTCCCGCCATT 58.693 47.619 0.00 0.00 45.87 3.16
2278 2494 2.373335 TTTGAAGGGGTAAGCTTGCA 57.627 45.000 16.70 0.00 0.00 4.08
2281 2497 1.017387 GAAGGGGTAAGCTTGCATCG 58.983 55.000 16.70 0.00 0.00 3.84
2489 2764 8.907885 GGATATGAAACTTAGGAAAGCAAGAAT 58.092 33.333 0.00 0.00 36.05 2.40
2628 2906 2.285368 AAGAGGATGTGGGCGGGA 60.285 61.111 0.00 0.00 0.00 5.14
2631 2909 1.227383 GAGGATGTGGGCGGGAATT 59.773 57.895 0.00 0.00 0.00 2.17
2632 2910 1.076777 AGGATGTGGGCGGGAATTG 60.077 57.895 0.00 0.00 0.00 2.32
2635 2913 0.682855 GATGTGGGCGGGAATTGGAA 60.683 55.000 0.00 0.00 0.00 3.53
2678 2957 4.838152 TTCCAGGATCTGCGCGCC 62.838 66.667 30.77 13.14 0.00 6.53
2723 3002 3.016971 TGCATAGGGTGGCTGGCT 61.017 61.111 2.00 0.00 0.00 4.75
2724 3003 2.276740 GCATAGGGTGGCTGGCTT 59.723 61.111 2.00 0.00 0.00 4.35
2772 4041 1.855213 GCATCAGCAACACCGAAGCA 61.855 55.000 0.00 0.00 41.58 3.91
2844 4188 1.923909 AGGGAGGCGCTAGGGTTTT 60.924 57.895 7.64 0.00 0.00 2.43
2908 4252 9.967346 GAAACTTAGGAAAGCAAGAAATACTTT 57.033 29.630 0.00 0.00 36.05 2.66
2994 4340 3.478509 AGCAGTGTCGTACTATCCCTAG 58.521 50.000 0.00 0.00 37.60 3.02
3033 4379 0.749649 CAGACCGAGGAAGAGGATGG 59.250 60.000 0.00 0.00 0.00 3.51
3037 4383 0.472734 CCGAGGAAGAGGATGGGGAT 60.473 60.000 0.00 0.00 0.00 3.85
3038 4384 1.203187 CCGAGGAAGAGGATGGGGATA 60.203 57.143 0.00 0.00 0.00 2.59
3193 4539 3.657059 CACGCAAGCAGCAGCACT 61.657 61.111 3.17 0.00 46.13 4.40
3391 4807 7.691993 TTTCTAGCAGATCCCCTAAACTTAT 57.308 36.000 0.00 0.00 0.00 1.73
3392 4808 8.792830 TTTCTAGCAGATCCCCTAAACTTATA 57.207 34.615 0.00 0.00 0.00 0.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 9.747457 AAATCGACATTTGAGTGGAACACCAAC 62.747 40.741 0.00 0.00 45.10 3.77
3 4 7.854204 AAATCGACATTTGAGTGGAACACCAA 61.854 38.462 0.00 0.00 45.10 3.67
4 5 6.437432 AAATCGACATTTGAGTGGAACACCA 61.437 40.000 0.00 0.00 45.10 4.17
5 6 4.023193 AAATCGACATTTGAGTGGAACACC 60.023 41.667 0.00 0.00 45.10 4.16
6 7 5.108385 AAATCGACATTTGAGTGGAACAC 57.892 39.130 0.00 0.00 44.68 3.32
7 8 4.215399 GGAAATCGACATTTGAGTGGAACA 59.785 41.667 0.00 0.00 33.35 3.18
8 9 4.455877 AGGAAATCGACATTTGAGTGGAAC 59.544 41.667 0.00 0.00 31.94 3.62
9 10 4.651778 AGGAAATCGACATTTGAGTGGAA 58.348 39.130 0.00 0.00 31.94 3.53
11 12 4.726416 CAAGGAAATCGACATTTGAGTGG 58.274 43.478 0.00 0.00 31.94 4.00
12 13 4.161333 GCAAGGAAATCGACATTTGAGTG 58.839 43.478 0.00 0.00 31.94 3.51
13 14 3.120199 CGCAAGGAAATCGACATTTGAGT 60.120 43.478 0.00 0.00 31.94 3.41
59 60 4.257654 TTTTCGCCCACGGGAGCA 62.258 61.111 6.21 0.00 40.63 4.26
60 61 3.431725 CTTTTCGCCCACGGGAGC 61.432 66.667 6.21 0.00 40.63 4.70
61 62 2.746277 CCTTTTCGCCCACGGGAG 60.746 66.667 6.21 2.06 40.63 4.30
62 63 4.338710 CCCTTTTCGCCCACGGGA 62.339 66.667 6.21 0.00 40.63 5.14
64 65 4.653888 ACCCCTTTTCGCCCACGG 62.654 66.667 0.00 0.00 40.63 4.94
65 66 3.361977 CACCCCTTTTCGCCCACG 61.362 66.667 0.00 0.00 42.01 4.94
66 67 1.971695 CTCACCCCTTTTCGCCCAC 60.972 63.158 0.00 0.00 0.00 4.61
67 68 2.124507 CTCTCACCCCTTTTCGCCCA 62.125 60.000 0.00 0.00 0.00 5.36
68 69 1.377333 CTCTCACCCCTTTTCGCCC 60.377 63.158 0.00 0.00 0.00 6.13
69 70 1.377333 CCTCTCACCCCTTTTCGCC 60.377 63.158 0.00 0.00 0.00 5.54
70 71 2.041115 GCCTCTCACCCCTTTTCGC 61.041 63.158 0.00 0.00 0.00 4.70
71 72 0.674895 CAGCCTCTCACCCCTTTTCG 60.675 60.000 0.00 0.00 0.00 3.46
72 73 0.962855 GCAGCCTCTCACCCCTTTTC 60.963 60.000 0.00 0.00 0.00 2.29
73 74 1.075659 GCAGCCTCTCACCCCTTTT 59.924 57.895 0.00 0.00 0.00 2.27
74 75 2.759795 GCAGCCTCTCACCCCTTT 59.240 61.111 0.00 0.00 0.00 3.11
75 76 3.334054 GGCAGCCTCTCACCCCTT 61.334 66.667 3.29 0.00 0.00 3.95
76 77 4.664267 TGGCAGCCTCTCACCCCT 62.664 66.667 14.15 0.00 0.00 4.79
77 78 4.416738 GTGGCAGCCTCTCACCCC 62.417 72.222 14.15 0.00 0.00 4.95
78 79 4.416738 GGTGGCAGCCTCTCACCC 62.417 72.222 14.15 0.00 43.65 4.61
79 80 4.767255 CGGTGGCAGCCTCTCACC 62.767 72.222 14.15 10.89 45.36 4.02
80 81 3.941657 GACGGTGGCAGCCTCTCAC 62.942 68.421 14.15 1.45 0.00 3.51
81 82 3.695606 GACGGTGGCAGCCTCTCA 61.696 66.667 14.15 0.00 0.00 3.27
82 83 3.363844 GAGACGGTGGCAGCCTCTC 62.364 68.421 23.19 23.19 0.00 3.20
83 84 2.500815 TAGAGACGGTGGCAGCCTCT 62.501 60.000 22.80 22.80 37.84 3.69
84 85 1.395826 ATAGAGACGGTGGCAGCCTC 61.396 60.000 14.15 9.31 0.00 4.70
85 86 0.978146 AATAGAGACGGTGGCAGCCT 60.978 55.000 14.15 2.86 0.00 4.58
86 87 0.530870 GAATAGAGACGGTGGCAGCC 60.531 60.000 11.63 3.66 0.00 4.85
87 88 0.461961 AGAATAGAGACGGTGGCAGC 59.538 55.000 6.62 6.62 0.00 5.25
88 89 2.952978 AGTAGAATAGAGACGGTGGCAG 59.047 50.000 0.00 0.00 0.00 4.85
89 90 2.688446 CAGTAGAATAGAGACGGTGGCA 59.312 50.000 0.00 0.00 0.00 4.92
90 91 2.544069 GCAGTAGAATAGAGACGGTGGC 60.544 54.545 0.00 0.00 0.00 5.01
91 92 2.952978 AGCAGTAGAATAGAGACGGTGG 59.047 50.000 0.00 0.00 0.00 4.61
92 93 4.318903 CGTAGCAGTAGAATAGAGACGGTG 60.319 50.000 0.00 0.00 0.00 4.94
93 94 3.808726 CGTAGCAGTAGAATAGAGACGGT 59.191 47.826 0.00 0.00 0.00 4.83
94 95 4.056740 TCGTAGCAGTAGAATAGAGACGG 58.943 47.826 0.00 0.00 0.00 4.79
95 96 5.849357 ATCGTAGCAGTAGAATAGAGACG 57.151 43.478 0.00 0.00 0.00 4.18
96 97 8.481974 TCATATCGTAGCAGTAGAATAGAGAC 57.518 38.462 0.00 0.00 0.00 3.36
97 98 9.503399 TTTCATATCGTAGCAGTAGAATAGAGA 57.497 33.333 0.00 0.00 0.00 3.10
102 103 9.416794 CTTCATTTCATATCGTAGCAGTAGAAT 57.583 33.333 0.00 0.00 0.00 2.40
103 104 7.867909 CCTTCATTTCATATCGTAGCAGTAGAA 59.132 37.037 0.00 0.00 0.00 2.10
104 105 7.230712 TCCTTCATTTCATATCGTAGCAGTAGA 59.769 37.037 0.00 0.00 0.00 2.59
105 106 7.371159 TCCTTCATTTCATATCGTAGCAGTAG 58.629 38.462 0.00 0.00 0.00 2.57
106 107 7.284919 TCCTTCATTTCATATCGTAGCAGTA 57.715 36.000 0.00 0.00 0.00 2.74
107 108 6.161855 TCCTTCATTTCATATCGTAGCAGT 57.838 37.500 0.00 0.00 0.00 4.40
108 109 7.172190 ACAATCCTTCATTTCATATCGTAGCAG 59.828 37.037 0.00 0.00 0.00 4.24
109 110 6.992123 ACAATCCTTCATTTCATATCGTAGCA 59.008 34.615 0.00 0.00 0.00 3.49
110 111 7.041780 ACACAATCCTTCATTTCATATCGTAGC 60.042 37.037 0.00 0.00 0.00 3.58
111 112 8.370493 ACACAATCCTTCATTTCATATCGTAG 57.630 34.615 0.00 0.00 0.00 3.51
112 113 9.476202 CTACACAATCCTTCATTTCATATCGTA 57.524 33.333 0.00 0.00 0.00 3.43
113 114 7.041780 GCTACACAATCCTTCATTTCATATCGT 60.042 37.037 0.00 0.00 0.00 3.73
114 115 7.293745 GCTACACAATCCTTCATTTCATATCG 58.706 38.462 0.00 0.00 0.00 2.92
115 116 7.293745 CGCTACACAATCCTTCATTTCATATC 58.706 38.462 0.00 0.00 0.00 1.63
116 117 6.205464 CCGCTACACAATCCTTCATTTCATAT 59.795 38.462 0.00 0.00 0.00 1.78
117 118 5.527214 CCGCTACACAATCCTTCATTTCATA 59.473 40.000 0.00 0.00 0.00 2.15
118 119 4.336433 CCGCTACACAATCCTTCATTTCAT 59.664 41.667 0.00 0.00 0.00 2.57
119 120 3.689161 CCGCTACACAATCCTTCATTTCA 59.311 43.478 0.00 0.00 0.00 2.69
120 121 3.487544 GCCGCTACACAATCCTTCATTTC 60.488 47.826 0.00 0.00 0.00 2.17
121 122 2.423538 GCCGCTACACAATCCTTCATTT 59.576 45.455 0.00 0.00 0.00 2.32
122 123 2.017049 GCCGCTACACAATCCTTCATT 58.983 47.619 0.00 0.00 0.00 2.57
123 124 1.065491 TGCCGCTACACAATCCTTCAT 60.065 47.619 0.00 0.00 0.00 2.57
124 125 0.323302 TGCCGCTACACAATCCTTCA 59.677 50.000 0.00 0.00 0.00 3.02
125 126 1.130561 GTTGCCGCTACACAATCCTTC 59.869 52.381 0.00 0.00 0.00 3.46
126 127 1.165270 GTTGCCGCTACACAATCCTT 58.835 50.000 0.00 0.00 0.00 3.36
127 128 0.036164 TGTTGCCGCTACACAATCCT 59.964 50.000 3.36 0.00 0.00 3.24
128 129 0.447801 CTGTTGCCGCTACACAATCC 59.552 55.000 3.36 0.00 0.00 3.01
129 130 1.156736 ACTGTTGCCGCTACACAATC 58.843 50.000 3.36 0.00 0.00 2.67
130 131 2.346803 CTACTGTTGCCGCTACACAAT 58.653 47.619 3.36 0.00 0.00 2.71
131 132 1.606994 CCTACTGTTGCCGCTACACAA 60.607 52.381 3.36 0.00 0.00 3.33
132 133 0.037697 CCTACTGTTGCCGCTACACA 60.038 55.000 3.36 0.00 0.00 3.72
133 134 0.245539 TCCTACTGTTGCCGCTACAC 59.754 55.000 3.36 0.00 0.00 2.90
134 135 1.134818 CATCCTACTGTTGCCGCTACA 60.135 52.381 7.44 7.44 0.00 2.74
135 136 1.134788 ACATCCTACTGTTGCCGCTAC 60.135 52.381 0.00 0.00 0.00 3.58
136 137 1.191535 ACATCCTACTGTTGCCGCTA 58.808 50.000 0.00 0.00 0.00 4.26
137 138 1.191535 TACATCCTACTGTTGCCGCT 58.808 50.000 0.00 0.00 0.00 5.52
138 139 2.018542 TTACATCCTACTGTTGCCGC 57.981 50.000 0.00 0.00 0.00 6.53
139 140 2.676342 GGTTTACATCCTACTGTTGCCG 59.324 50.000 0.00 0.00 0.00 5.69
140 141 3.681593 TGGTTTACATCCTACTGTTGCC 58.318 45.455 0.00 0.00 0.00 4.52
141 142 3.689649 CCTGGTTTACATCCTACTGTTGC 59.310 47.826 0.00 0.00 0.00 4.17
142 143 4.906618 ACCTGGTTTACATCCTACTGTTG 58.093 43.478 0.00 0.00 0.00 3.33
143 144 4.019591 GGACCTGGTTTACATCCTACTGTT 60.020 45.833 0.00 0.00 0.00 3.16
144 145 3.518303 GGACCTGGTTTACATCCTACTGT 59.482 47.826 0.00 0.00 0.00 3.55
145 146 3.118371 GGGACCTGGTTTACATCCTACTG 60.118 52.174 0.00 0.00 30.46 2.74
146 147 3.113043 GGGACCTGGTTTACATCCTACT 58.887 50.000 0.00 0.00 30.46 2.57
147 148 2.159000 CGGGACCTGGTTTACATCCTAC 60.159 54.545 0.00 0.00 30.46 3.18
148 149 2.112998 CGGGACCTGGTTTACATCCTA 58.887 52.381 0.00 0.00 30.46 2.94
149 150 0.909623 CGGGACCTGGTTTACATCCT 59.090 55.000 0.00 0.00 30.46 3.24
150 151 0.616891 ACGGGACCTGGTTTACATCC 59.383 55.000 5.03 0.00 0.00 3.51
151 152 2.484742 AACGGGACCTGGTTTACATC 57.515 50.000 5.03 0.00 0.00 3.06
152 153 2.963599 AAACGGGACCTGGTTTACAT 57.036 45.000 5.03 0.00 34.79 2.29
153 154 3.853355 TTAAACGGGACCTGGTTTACA 57.147 42.857 9.40 4.77 38.08 2.41
154 155 3.253188 GGTTTAAACGGGACCTGGTTTAC 59.747 47.826 9.40 8.08 38.08 2.01
155 156 3.485394 GGTTTAAACGGGACCTGGTTTA 58.515 45.455 9.40 12.24 37.52 2.01
156 157 2.309613 GGTTTAAACGGGACCTGGTTT 58.690 47.619 9.40 13.20 39.50 3.27
157 158 1.479205 GGGTTTAAACGGGACCTGGTT 60.479 52.381 9.05 9.05 33.90 3.67
158 159 0.111061 GGGTTTAAACGGGACCTGGT 59.889 55.000 12.07 0.00 33.90 4.00
159 160 0.110869 TGGGTTTAAACGGGACCTGG 59.889 55.000 12.07 0.00 33.90 4.45
160 161 1.202842 AGTGGGTTTAAACGGGACCTG 60.203 52.381 12.07 0.00 33.90 4.00
161 162 1.142936 AGTGGGTTTAAACGGGACCT 58.857 50.000 12.07 1.35 33.90 3.85
162 163 2.038952 ACTAGTGGGTTTAAACGGGACC 59.961 50.000 12.07 8.13 0.00 4.46
163 164 3.069289 CACTAGTGGGTTTAAACGGGAC 58.931 50.000 15.49 8.26 0.00 4.46
164 165 2.971330 TCACTAGTGGGTTTAAACGGGA 59.029 45.455 22.48 1.21 0.00 5.14
165 166 3.405823 TCACTAGTGGGTTTAAACGGG 57.594 47.619 22.48 0.00 0.00 5.28
166 167 4.828829 AGATCACTAGTGGGTTTAAACGG 58.171 43.478 22.48 0.00 0.00 4.44
167 168 7.894376 TTTAGATCACTAGTGGGTTTAAACG 57.106 36.000 22.48 0.12 0.00 3.60
168 169 9.281371 ACTTTTAGATCACTAGTGGGTTTAAAC 57.719 33.333 22.48 9.98 0.00 2.01
169 170 9.856162 AACTTTTAGATCACTAGTGGGTTTAAA 57.144 29.630 22.48 17.72 0.00 1.52
170 171 9.498176 GAACTTTTAGATCACTAGTGGGTTTAA 57.502 33.333 22.48 13.59 0.00 1.52
171 172 8.653191 TGAACTTTTAGATCACTAGTGGGTTTA 58.347 33.333 22.48 8.79 0.00 2.01
172 173 7.514721 TGAACTTTTAGATCACTAGTGGGTTT 58.485 34.615 22.48 9.70 0.00 3.27
173 174 7.074653 TGAACTTTTAGATCACTAGTGGGTT 57.925 36.000 22.48 13.21 0.00 4.11
174 175 6.681729 TGAACTTTTAGATCACTAGTGGGT 57.318 37.500 22.48 11.82 0.00 4.51
175 176 9.667107 TTATTGAACTTTTAGATCACTAGTGGG 57.333 33.333 22.48 0.00 26.15 4.61
191 192 9.810545 TCTTCGGAAAAACAAATTATTGAACTT 57.189 25.926 0.00 0.00 38.94 2.66
192 193 9.810545 TTCTTCGGAAAAACAAATTATTGAACT 57.189 25.926 0.00 0.00 38.94 3.01
208 209 6.128007 GCTCCATAGTTCATTTTCTTCGGAAA 60.128 38.462 0.00 0.00 41.57 3.13
209 210 5.354234 GCTCCATAGTTCATTTTCTTCGGAA 59.646 40.000 0.00 0.00 0.00 4.30
210 211 4.876107 GCTCCATAGTTCATTTTCTTCGGA 59.124 41.667 0.00 0.00 0.00 4.55
211 212 4.878397 AGCTCCATAGTTCATTTTCTTCGG 59.122 41.667 0.00 0.00 0.00 4.30
212 213 6.292596 GCTAGCTCCATAGTTCATTTTCTTCG 60.293 42.308 7.70 0.00 0.00 3.79
213 214 6.765512 AGCTAGCTCCATAGTTCATTTTCTTC 59.234 38.462 12.68 0.00 0.00 2.87
214 215 6.657875 AGCTAGCTCCATAGTTCATTTTCTT 58.342 36.000 12.68 0.00 0.00 2.52
215 216 6.245890 AGCTAGCTCCATAGTTCATTTTCT 57.754 37.500 12.68 0.00 0.00 2.52
216 217 8.438676 TTTAGCTAGCTCCATAGTTCATTTTC 57.561 34.615 23.26 0.00 0.00 2.29
217 218 8.049721 ACTTTAGCTAGCTCCATAGTTCATTTT 58.950 33.333 23.26 0.00 0.00 1.82
218 219 7.569240 ACTTTAGCTAGCTCCATAGTTCATTT 58.431 34.615 23.26 0.00 0.00 2.32
219 220 7.130681 ACTTTAGCTAGCTCCATAGTTCATT 57.869 36.000 23.26 0.00 0.00 2.57
220 221 6.739331 ACTTTAGCTAGCTCCATAGTTCAT 57.261 37.500 23.26 0.00 0.00 2.57
221 222 6.546428 AACTTTAGCTAGCTCCATAGTTCA 57.454 37.500 23.26 0.00 0.00 3.18
222 223 8.198778 AGTTAACTTTAGCTAGCTCCATAGTTC 58.801 37.037 23.26 13.83 0.00 3.01
223 224 8.080363 AGTTAACTTTAGCTAGCTCCATAGTT 57.920 34.615 23.26 24.12 0.00 2.24
224 225 7.663043 AGTTAACTTTAGCTAGCTCCATAGT 57.337 36.000 23.26 16.46 0.00 2.12
225 226 9.685828 CTTAGTTAACTTTAGCTAGCTCCATAG 57.314 37.037 23.26 15.83 29.99 2.23
226 227 8.142551 GCTTAGTTAACTTTAGCTAGCTCCATA 58.857 37.037 23.26 0.00 32.86 2.74
227 228 6.987404 GCTTAGTTAACTTTAGCTAGCTCCAT 59.013 38.462 23.26 7.07 32.86 3.41
228 229 6.338937 GCTTAGTTAACTTTAGCTAGCTCCA 58.661 40.000 23.26 6.46 32.86 3.86
229 230 5.459434 CGCTTAGTTAACTTTAGCTAGCTCC 59.541 44.000 23.26 0.26 33.20 4.70
230 231 5.459434 CCGCTTAGTTAACTTTAGCTAGCTC 59.541 44.000 23.26 3.86 33.20 4.09
231 232 5.349809 CCGCTTAGTTAACTTTAGCTAGCT 58.650 41.667 26.53 23.12 33.20 3.32
232 233 4.025896 GCCGCTTAGTTAACTTTAGCTAGC 60.026 45.833 26.53 24.67 33.20 3.42
233 234 5.005490 GTGCCGCTTAGTTAACTTTAGCTAG 59.995 44.000 26.53 21.34 33.20 3.42
234 235 4.866486 GTGCCGCTTAGTTAACTTTAGCTA 59.134 41.667 26.53 16.58 33.20 3.32
235 236 3.683340 GTGCCGCTTAGTTAACTTTAGCT 59.317 43.478 26.53 0.00 33.20 3.32
236 237 3.683340 AGTGCCGCTTAGTTAACTTTAGC 59.317 43.478 22.78 22.78 32.51 3.09
237 238 5.618561 CAAGTGCCGCTTAGTTAACTTTAG 58.381 41.667 14.49 12.48 35.27 1.85
238 239 4.083696 GCAAGTGCCGCTTAGTTAACTTTA 60.084 41.667 14.49 1.72 35.27 1.85
239 240 3.304458 GCAAGTGCCGCTTAGTTAACTTT 60.304 43.478 14.49 0.00 35.27 2.66
240 241 2.225727 GCAAGTGCCGCTTAGTTAACTT 59.774 45.455 14.49 0.00 35.27 2.66
241 242 1.804748 GCAAGTGCCGCTTAGTTAACT 59.195 47.619 13.68 13.68 35.27 2.24
242 243 1.463528 CGCAAGTGCCGCTTAGTTAAC 60.464 52.381 0.00 0.00 35.27 2.01
243 244 0.793861 CGCAAGTGCCGCTTAGTTAA 59.206 50.000 0.00 0.00 35.27 2.01
244 245 0.038067 TCGCAAGTGCCGCTTAGTTA 60.038 50.000 0.00 0.00 35.27 2.24
245 246 0.882927 TTCGCAAGTGCCGCTTAGTT 60.883 50.000 0.00 0.00 35.27 2.24
246 247 1.301401 TTCGCAAGTGCCGCTTAGT 60.301 52.632 0.00 0.00 35.27 2.24
247 248 1.132640 GTTCGCAAGTGCCGCTTAG 59.867 57.895 0.00 0.00 35.27 2.18
248 249 2.322081 GGTTCGCAAGTGCCGCTTA 61.322 57.895 0.00 0.00 35.27 3.09
249 250 3.660111 GGTTCGCAAGTGCCGCTT 61.660 61.111 0.00 0.00 37.91 4.68
252 253 4.025401 GTGGGTTCGCAAGTGCCG 62.025 66.667 0.00 0.00 37.91 5.69
253 254 0.887387 TAAGTGGGTTCGCAAGTGCC 60.887 55.000 0.00 0.00 37.91 5.01
254 255 1.165270 ATAAGTGGGTTCGCAAGTGC 58.835 50.000 0.00 0.00 39.48 4.40
255 256 5.560966 AATAATAAGTGGGTTCGCAAGTG 57.439 39.130 0.00 0.00 39.48 3.16
256 257 5.621329 GCAAATAATAAGTGGGTTCGCAAGT 60.621 40.000 0.00 0.00 39.48 3.16
257 258 4.798387 GCAAATAATAAGTGGGTTCGCAAG 59.202 41.667 0.00 0.00 0.00 4.01
258 259 4.381079 GGCAAATAATAAGTGGGTTCGCAA 60.381 41.667 0.00 0.00 0.00 4.85
259 260 3.129638 GGCAAATAATAAGTGGGTTCGCA 59.870 43.478 0.00 0.00 0.00 5.10
260 261 3.129638 TGGCAAATAATAAGTGGGTTCGC 59.870 43.478 0.00 0.00 0.00 4.70
261 262 4.974368 TGGCAAATAATAAGTGGGTTCG 57.026 40.909 0.00 0.00 0.00 3.95
271 272 9.640952 GCCTAGGGATATAAATGGCAAATAATA 57.359 33.333 11.72 0.00 38.79 0.98
272 273 7.285401 CGCCTAGGGATATAAATGGCAAATAAT 59.715 37.037 11.72 0.00 38.87 1.28
273 274 6.601613 CGCCTAGGGATATAAATGGCAAATAA 59.398 38.462 11.72 0.00 38.87 1.40
274 275 6.119536 CGCCTAGGGATATAAATGGCAAATA 58.880 40.000 11.72 0.00 38.87 1.40
275 276 4.949856 CGCCTAGGGATATAAATGGCAAAT 59.050 41.667 11.72 0.00 38.87 2.32
276 277 4.331968 CGCCTAGGGATATAAATGGCAAA 58.668 43.478 11.72 0.00 38.87 3.68
277 278 3.308117 CCGCCTAGGGATATAAATGGCAA 60.308 47.826 11.72 0.00 38.87 4.52
278 279 2.238646 CCGCCTAGGGATATAAATGGCA 59.761 50.000 11.72 0.00 38.87 4.92
279 280 2.919228 CCGCCTAGGGATATAAATGGC 58.081 52.381 11.72 0.00 35.97 4.40
280 281 2.238646 TGCCGCCTAGGGATATAAATGG 59.761 50.000 11.72 0.00 41.48 3.16
281 282 3.627395 TGCCGCCTAGGGATATAAATG 57.373 47.619 11.72 0.00 41.48 2.32
282 283 3.054361 CCTTGCCGCCTAGGGATATAAAT 60.054 47.826 11.72 0.00 41.19 1.40
283 284 2.304761 CCTTGCCGCCTAGGGATATAAA 59.695 50.000 11.72 0.00 41.19 1.40
284 285 1.906574 CCTTGCCGCCTAGGGATATAA 59.093 52.381 11.72 0.00 41.19 0.98
285 286 1.203262 ACCTTGCCGCCTAGGGATATA 60.203 52.381 11.72 0.00 41.19 0.86
286 287 0.473886 ACCTTGCCGCCTAGGGATAT 60.474 55.000 11.72 0.00 41.19 1.63
287 288 0.693092 AACCTTGCCGCCTAGGGATA 60.693 55.000 11.72 0.00 41.19 2.59
288 289 0.693092 TAACCTTGCCGCCTAGGGAT 60.693 55.000 11.72 4.71 41.19 3.85
289 290 1.306312 TAACCTTGCCGCCTAGGGA 60.306 57.895 11.72 0.00 41.48 4.20
290 291 1.153229 GTAACCTTGCCGCCTAGGG 60.153 63.158 11.72 0.14 41.48 3.53
291 292 1.520787 CGTAACCTTGCCGCCTAGG 60.521 63.158 3.67 3.67 44.97 3.02
292 293 1.520787 CCGTAACCTTGCCGCCTAG 60.521 63.158 0.00 0.00 0.00 3.02
293 294 2.580276 CCGTAACCTTGCCGCCTA 59.420 61.111 0.00 0.00 0.00 3.93
296 297 1.816259 TATGCCGTAACCTTGCCGC 60.816 57.895 0.00 0.00 0.00 6.53
297 298 0.461339 AGTATGCCGTAACCTTGCCG 60.461 55.000 0.00 0.00 0.00 5.69
298 299 1.296727 GAGTATGCCGTAACCTTGCC 58.703 55.000 0.00 0.00 0.00 4.52
299 300 1.296727 GGAGTATGCCGTAACCTTGC 58.703 55.000 0.00 0.00 0.00 4.01
300 301 1.949465 GGGAGTATGCCGTAACCTTG 58.051 55.000 0.00 0.00 36.28 3.61
326 327 6.376018 ACCAAAGCTAATATGCGGAGTAAAAA 59.624 34.615 0.00 0.00 38.13 1.94
327 328 5.883673 ACCAAAGCTAATATGCGGAGTAAAA 59.116 36.000 0.00 0.00 38.13 1.52
328 329 5.433526 ACCAAAGCTAATATGCGGAGTAAA 58.566 37.500 0.00 0.00 38.13 2.01
329 330 5.031066 ACCAAAGCTAATATGCGGAGTAA 57.969 39.130 0.00 0.00 38.13 2.24
330 331 4.100344 TGACCAAAGCTAATATGCGGAGTA 59.900 41.667 0.00 0.00 38.13 2.59
331 332 3.118408 TGACCAAAGCTAATATGCGGAGT 60.118 43.478 0.00 0.00 38.13 3.85
332 333 3.466836 TGACCAAAGCTAATATGCGGAG 58.533 45.455 0.00 0.00 38.13 4.63
333 334 3.552132 TGACCAAAGCTAATATGCGGA 57.448 42.857 0.00 0.00 38.13 5.54
334 335 4.601019 CTTTGACCAAAGCTAATATGCGG 58.399 43.478 9.25 0.00 40.94 5.69
354 355 6.027749 CGTCAAAGTTTACAAAGCTTGACTT 58.972 36.000 17.89 3.36 41.70 3.01
355 356 5.353123 TCGTCAAAGTTTACAAAGCTTGACT 59.647 36.000 17.89 0.00 37.92 3.41
356 357 5.565695 TCGTCAAAGTTTACAAAGCTTGAC 58.434 37.500 0.00 13.74 37.34 3.18
357 358 5.804692 TCGTCAAAGTTTACAAAGCTTGA 57.195 34.783 0.00 0.00 0.00 3.02
358 359 6.862944 TTTCGTCAAAGTTTACAAAGCTTG 57.137 33.333 0.00 0.00 0.00 4.01
359 360 8.474006 AAATTTCGTCAAAGTTTACAAAGCTT 57.526 26.923 0.00 0.00 0.00 3.74
360 361 9.744468 ATAAATTTCGTCAAAGTTTACAAAGCT 57.256 25.926 0.00 0.00 32.25 3.74
437 438 9.283768 TCCATATGATGCGAAAGTATGTTTAAT 57.716 29.630 3.65 0.00 36.23 1.40
438 439 8.669946 TCCATATGATGCGAAAGTATGTTTAA 57.330 30.769 3.65 0.00 36.23 1.52
439 440 8.846943 ATCCATATGATGCGAAAGTATGTTTA 57.153 30.769 3.65 0.00 36.23 2.01
440 441 7.750229 ATCCATATGATGCGAAAGTATGTTT 57.250 32.000 3.65 0.00 36.23 2.83
441 442 7.750229 AATCCATATGATGCGAAAGTATGTT 57.250 32.000 3.65 0.00 36.23 2.71
442 443 7.229306 ACAAATCCATATGATGCGAAAGTATGT 59.771 33.333 3.65 0.00 36.23 2.29
443 444 7.587629 ACAAATCCATATGATGCGAAAGTATG 58.412 34.615 3.65 0.00 36.23 2.39
444 445 7.750229 ACAAATCCATATGATGCGAAAGTAT 57.250 32.000 3.65 0.00 39.87 2.12
445 446 7.566760 AACAAATCCATATGATGCGAAAGTA 57.433 32.000 3.65 0.00 32.68 2.24
446 447 6.455360 AACAAATCCATATGATGCGAAAGT 57.545 33.333 3.65 0.00 32.68 2.66
447 448 7.539710 CCATAACAAATCCATATGATGCGAAAG 59.460 37.037 3.65 0.00 32.68 2.62
448 449 7.014134 ACCATAACAAATCCATATGATGCGAAA 59.986 33.333 3.65 0.00 32.68 3.46
449 450 6.489700 ACCATAACAAATCCATATGATGCGAA 59.510 34.615 3.65 0.00 32.68 4.70
450 451 6.003326 ACCATAACAAATCCATATGATGCGA 58.997 36.000 3.65 0.00 32.68 5.10
451 452 6.258230 ACCATAACAAATCCATATGATGCG 57.742 37.500 3.65 0.00 32.68 4.73
523 524 6.818644 TCTGCATAATAGAGTTGACCAAAGTC 59.181 38.462 0.00 0.00 43.83 3.01
524 525 6.711277 TCTGCATAATAGAGTTGACCAAAGT 58.289 36.000 0.00 0.00 0.00 2.66
525 526 7.244166 CTCTGCATAATAGAGTTGACCAAAG 57.756 40.000 0.00 0.00 37.48 2.77
540 541 8.455682 CCCTTCGTTTTTATTTACTCTGCATAA 58.544 33.333 0.00 0.00 0.00 1.90
541 542 7.825270 TCCCTTCGTTTTTATTTACTCTGCATA 59.175 33.333 0.00 0.00 0.00 3.14
542 543 6.657541 TCCCTTCGTTTTTATTTACTCTGCAT 59.342 34.615 0.00 0.00 0.00 3.96
543 544 5.998981 TCCCTTCGTTTTTATTTACTCTGCA 59.001 36.000 0.00 0.00 0.00 4.41
544 545 6.148976 ACTCCCTTCGTTTTTATTTACTCTGC 59.851 38.462 0.00 0.00 0.00 4.26
545 546 7.668525 ACTCCCTTCGTTTTTATTTACTCTG 57.331 36.000 0.00 0.00 0.00 3.35
554 555 9.807649 GAACACTATATACTCCCTTCGTTTTTA 57.192 33.333 0.00 0.00 0.00 1.52
555 556 8.537858 AGAACACTATATACTCCCTTCGTTTTT 58.462 33.333 0.00 0.00 0.00 1.94
556 557 8.075761 AGAACACTATATACTCCCTTCGTTTT 57.924 34.615 0.00 0.00 0.00 2.43
557 558 7.657023 AGAACACTATATACTCCCTTCGTTT 57.343 36.000 0.00 0.00 0.00 3.60
558 559 7.657023 AAGAACACTATATACTCCCTTCGTT 57.343 36.000 0.00 0.00 0.00 3.85
559 560 7.341256 TCAAAGAACACTATATACTCCCTTCGT 59.659 37.037 0.00 0.00 0.00 3.85
560 561 7.648510 GTCAAAGAACACTATATACTCCCTTCG 59.351 40.741 0.00 0.00 0.00 3.79
561 562 8.475639 TGTCAAAGAACACTATATACTCCCTTC 58.524 37.037 0.00 0.00 0.00 3.46
562 563 8.375493 TGTCAAAGAACACTATATACTCCCTT 57.625 34.615 0.00 0.00 0.00 3.95
563 564 7.973048 TGTCAAAGAACACTATATACTCCCT 57.027 36.000 0.00 0.00 0.00 4.20
564 565 7.657761 CCATGTCAAAGAACACTATATACTCCC 59.342 40.741 0.00 0.00 30.55 4.30
565 566 8.204836 ACCATGTCAAAGAACACTATATACTCC 58.795 37.037 0.00 0.00 30.55 3.85
566 567 9.035607 CACCATGTCAAAGAACACTATATACTC 57.964 37.037 0.00 0.00 30.55 2.59
567 568 7.987458 CCACCATGTCAAAGAACACTATATACT 59.013 37.037 0.00 0.00 30.55 2.12
568 569 7.769044 ACCACCATGTCAAAGAACACTATATAC 59.231 37.037 0.00 0.00 30.55 1.47
569 570 7.768582 CACCACCATGTCAAAGAACACTATATA 59.231 37.037 0.00 0.00 30.55 0.86
570 571 6.599244 CACCACCATGTCAAAGAACACTATAT 59.401 38.462 0.00 0.00 30.55 0.86
571 572 5.937540 CACCACCATGTCAAAGAACACTATA 59.062 40.000 0.00 0.00 30.55 1.31
572 573 4.761739 CACCACCATGTCAAAGAACACTAT 59.238 41.667 0.00 0.00 30.55 2.12
573 574 4.133820 CACCACCATGTCAAAGAACACTA 58.866 43.478 0.00 0.00 30.55 2.74
574 575 2.951642 CACCACCATGTCAAAGAACACT 59.048 45.455 0.00 0.00 30.55 3.55
575 576 2.543653 GCACCACCATGTCAAAGAACAC 60.544 50.000 0.00 0.00 30.55 3.32
576 577 1.680735 GCACCACCATGTCAAAGAACA 59.319 47.619 0.00 0.00 0.00 3.18
577 578 1.956477 AGCACCACCATGTCAAAGAAC 59.044 47.619 0.00 0.00 0.00 3.01
578 579 2.229792 GAGCACCACCATGTCAAAGAA 58.770 47.619 0.00 0.00 0.00 2.52
579 580 1.545428 GGAGCACCACCATGTCAAAGA 60.545 52.381 0.00 0.00 35.97 2.52
580 581 0.883833 GGAGCACCACCATGTCAAAG 59.116 55.000 0.00 0.00 35.97 2.77
581 582 0.478072 AGGAGCACCACCATGTCAAA 59.522 50.000 2.07 0.00 38.94 2.69
582 583 0.478072 AAGGAGCACCACCATGTCAA 59.522 50.000 2.07 0.00 38.94 3.18
583 584 0.036732 GAAGGAGCACCACCATGTCA 59.963 55.000 2.07 0.00 38.94 3.58
584 585 1.021390 CGAAGGAGCACCACCATGTC 61.021 60.000 2.07 0.00 38.94 3.06
585 586 1.003355 CGAAGGAGCACCACCATGT 60.003 57.895 2.07 0.00 38.94 3.21
586 587 2.401766 GCGAAGGAGCACCACCATG 61.402 63.158 2.07 0.00 38.94 3.66
587 588 2.045926 GCGAAGGAGCACCACCAT 60.046 61.111 2.07 0.00 38.94 3.55
602 603 0.678048 CCCCAGGGAAGAAGAAAGCG 60.678 60.000 7.25 0.00 37.50 4.68
754 784 9.742552 GAATTTAGTCACTAGAATCGTTTTCAC 57.257 33.333 0.00 0.00 0.00 3.18
769 799 4.391830 TCATGCGACTTGGAATTTAGTCAC 59.608 41.667 13.38 7.04 40.59 3.67
840 1029 7.760794 TGGCGTATTATTATTCCCGTATTACAG 59.239 37.037 0.00 0.00 0.00 2.74
848 1037 7.605410 AACTTATGGCGTATTATTATTCCCG 57.395 36.000 0.00 0.00 0.00 5.14
1363 1565 4.707768 TCCGGCGAGGGGAGGAAA 62.708 66.667 9.30 0.00 41.52 3.13
1375 1577 1.522580 GTTGATCCAGAGCTCCGGC 60.523 63.158 11.45 0.00 39.06 6.13
1414 1616 2.203983 TGCTTGGAGAGGAGGGCA 60.204 61.111 0.00 0.00 0.00 5.36
1529 1731 5.694006 GGTGACAATGTATCACATCTAGCTC 59.306 44.000 7.38 0.00 46.89 4.09
1534 1736 3.782523 AGGGGTGACAATGTATCACATCT 59.217 43.478 7.38 2.08 46.89 2.90
1540 1742 3.933861 AGGAAGGGGTGACAATGTATC 57.066 47.619 0.00 0.00 0.00 2.24
1603 1809 1.450312 CATGACCCTGAAGCCCGAC 60.450 63.158 0.00 0.00 0.00 4.79
2149 2364 3.367992 AGCTTCATAGTCTGCAGATCG 57.632 47.619 21.47 8.88 0.00 3.69
2241 2456 5.560722 TCAAATAGTTGGTGGAGACAAGA 57.439 39.130 2.65 0.00 36.19 3.02
2367 2589 9.174166 GGGCAGAAATTAGTACAATAAGAGAAA 57.826 33.333 0.00 0.00 0.00 2.52
2368 2590 8.325787 TGGGCAGAAATTAGTACAATAAGAGAA 58.674 33.333 0.00 0.00 0.00 2.87
2378 2600 9.740710 AGGATTATAATGGGCAGAAATTAGTAC 57.259 33.333 1.78 0.00 0.00 2.73
2463 2738 7.865706 TCTTGCTTTCCTAAGTTTCATATCC 57.134 36.000 0.00 0.00 33.74 2.59
2628 2906 1.880646 CGGTTCCACTCGGTTCCAATT 60.881 52.381 0.00 0.00 0.00 2.32
2631 2909 1.812686 CTCGGTTCCACTCGGTTCCA 61.813 60.000 0.00 0.00 0.00 3.53
2632 2910 1.080025 CTCGGTTCCACTCGGTTCC 60.080 63.158 0.00 0.00 0.00 3.62
2635 2913 0.538977 TCTTCTCGGTTCCACTCGGT 60.539 55.000 0.00 0.00 0.00 4.69
2678 2957 1.549170 GGCGGACCCCTATATGTGTAG 59.451 57.143 0.00 0.00 0.00 2.74
2752 4021 1.503542 CTTCGGTGTTGCTGATGCC 59.496 57.895 0.00 0.00 38.71 4.40
2798 4068 1.374947 GCCACCCACTCTTACAGCA 59.625 57.895 0.00 0.00 0.00 4.41
2826 4170 1.923909 AAAACCCTAGCGCCTCCCT 60.924 57.895 2.29 0.00 0.00 4.20
2835 4179 1.740025 GCAGCACTAGCAAAACCCTAG 59.260 52.381 0.00 0.00 45.49 3.02
2844 4188 1.142531 CATCCGAGCAGCACTAGCA 59.857 57.895 0.00 0.00 45.49 3.49
2994 4340 4.873746 TGGCATCTCCAGCTTACTATAC 57.126 45.455 0.00 0.00 40.72 1.47
3018 4364 0.472734 ATCCCCATCCTCTTCCTCGG 60.473 60.000 0.00 0.00 0.00 4.63
3033 4379 1.469335 TTGGATCCGACGCCTATCCC 61.469 60.000 7.39 1.48 38.76 3.85
3037 4383 1.315690 CTACTTGGATCCGACGCCTA 58.684 55.000 7.39 0.00 0.00 3.93
3038 4384 2.017559 GCTACTTGGATCCGACGCCT 62.018 60.000 7.39 0.00 0.00 5.52
3133 4479 1.067283 CAATATTTGTGCGGGCCAACA 60.067 47.619 4.39 4.37 0.00 3.33
3192 4538 1.342174 ACCAAACAAAGCTCATGCCAG 59.658 47.619 0.00 0.00 40.80 4.85
3193 4539 1.068895 CACCAAACAAAGCTCATGCCA 59.931 47.619 0.00 0.00 40.80 4.92
3194 4540 1.069049 ACACCAAACAAAGCTCATGCC 59.931 47.619 0.00 0.00 40.80 4.40
3391 4807 4.720273 GGATAGGAAGAAGGTTTGAGGGTA 59.280 45.833 0.00 0.00 0.00 3.69
3392 4808 3.523972 GGATAGGAAGAAGGTTTGAGGGT 59.476 47.826 0.00 0.00 0.00 4.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.