Multiple sequence alignment - TraesCS7A01G562200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G562200 chr7A 100.000 3529 0 0 1 3529 732970451 732973979 0.000000e+00 6517.0
1 TraesCS7A01G562200 chr7A 82.395 1403 192 28 1186 2551 733079319 733080703 0.000000e+00 1171.0
2 TraesCS7A01G562200 chr7A 79.944 359 45 13 347 701 164195721 164195386 4.550000e-59 239.0
3 TraesCS7A01G562200 chr7A 81.034 174 23 7 729 894 592918745 592918916 2.860000e-26 130.0
4 TraesCS7A01G562200 chr7B 92.535 1728 82 11 947 2642 750106170 750104458 0.000000e+00 2433.0
5 TraesCS7A01G562200 chr7B 83.357 1406 190 24 1173 2551 750096498 750095110 0.000000e+00 1260.0
6 TraesCS7A01G562200 chr7B 87.409 548 54 9 336 882 750106704 750106171 1.800000e-172 616.0
7 TraesCS7A01G562200 chr7B 79.888 358 48 11 347 702 125394116 125393781 1.270000e-59 241.0
8 TraesCS7A01G562200 chr2A 95.181 913 41 3 2618 3529 743020192 743019282 0.000000e+00 1439.0
9 TraesCS7A01G562200 chr2A 94.577 922 47 2 2611 3529 515467262 515466341 0.000000e+00 1423.0
10 TraesCS7A01G562200 chr2A 94.360 922 48 3 2611 3529 230760612 230759692 0.000000e+00 1411.0
11 TraesCS7A01G562200 chr2A 86.364 176 22 2 1388 1562 3361387 3361561 1.290000e-44 191.0
12 TraesCS7A01G562200 chr2A 88.571 70 6 2 737 806 247748978 247748911 2.260000e-12 84.2
13 TraesCS7A01G562200 chr3A 94.589 924 45 4 2608 3529 697933461 697934381 0.000000e+00 1424.0
14 TraesCS7A01G562200 chr3A 94.481 924 47 3 2609 3529 88126399 88125477 0.000000e+00 1421.0
15 TraesCS7A01G562200 chr3A 94.264 924 51 1 2608 3529 216708432 216709355 0.000000e+00 1411.0
16 TraesCS7A01G562200 chr3A 81.137 387 58 10 336 717 728237233 728236857 2.660000e-76 296.0
17 TraesCS7A01G562200 chr3A 80.165 363 58 8 356 714 728098757 728098405 3.490000e-65 259.0
18 TraesCS7A01G562200 chr5A 94.450 919 49 1 2613 3529 402059503 402058585 0.000000e+00 1413.0
19 TraesCS7A01G562200 chr5A 94.252 922 50 2 2611 3529 265967790 265966869 0.000000e+00 1406.0
20 TraesCS7A01G562200 chr5A 82.474 97 15 2 1418 1513 619849584 619849489 2.260000e-12 84.2
21 TraesCS7A01G562200 chr1A 94.264 924 50 3 2608 3529 351136260 351137182 0.000000e+00 1410.0
22 TraesCS7A01G562200 chr7D 83.268 1279 178 15 1283 2551 633617069 633615817 0.000000e+00 1144.0
23 TraesCS7A01G562200 chr7D 80.435 230 35 4 438 666 35526219 35526439 2.180000e-37 167.0
24 TraesCS7A01G562200 chr7D 77.600 250 49 5 415 661 159067769 159067524 1.020000e-30 145.0
25 TraesCS7A01G562200 chr7D 91.566 83 5 2 735 817 22785805 22785725 2.880000e-21 113.0
26 TraesCS7A01G562200 chr7D 80.000 165 20 9 735 888 184831112 184831274 3.720000e-20 110.0
27 TraesCS7A01G562200 chr3D 81.337 359 43 9 356 712 256986877 256986541 1.610000e-68 270.0
28 TraesCS7A01G562200 chr3D 83.077 130 18 3 347 474 11767979 11767852 8.010000e-22 115.0
29 TraesCS7A01G562200 chr5D 75.776 322 74 3 346 666 529255917 529256235 3.650000e-35 159.0
30 TraesCS7A01G562200 chr5D 81.967 122 17 5 582 703 106810433 106810549 8.060000e-17 99.0
31 TraesCS7A01G562200 chr5D 75.159 157 36 3 1396 1552 449291099 449290946 1.760000e-08 71.3
32 TraesCS7A01G562200 chr2B 80.982 163 16 9 735 885 800062817 800062976 8.010000e-22 115.0
33 TraesCS7A01G562200 chr2B 79.268 164 21 7 735 887 785862850 785863011 6.230000e-18 102.0
34 TraesCS7A01G562200 chr4B 80.240 167 20 9 735 890 20604077 20603913 2.880000e-21 113.0
35 TraesCS7A01G562200 chr4B 98.113 53 1 0 754 806 35248309 35248257 3.750000e-15 93.5
36 TraesCS7A01G562200 chr4B 88.235 68 7 1 735 802 386090499 386090565 2.920000e-11 80.5
37 TraesCS7A01G562200 chr2D 79.235 183 21 14 735 905 305515030 305514853 1.040000e-20 111.0
38 TraesCS7A01G562200 chr2D 79.545 132 21 5 1387 1514 5116355 5116484 4.850000e-14 89.8
39 TraesCS7A01G562200 chr1D 80.690 145 26 2 368 511 472399208 472399065 1.040000e-20 111.0
40 TraesCS7A01G562200 chr1D 96.552 58 0 2 830 887 200442204 200442259 1.040000e-15 95.3
41 TraesCS7A01G562200 chr1D 94.286 35 2 0 809 843 451068782 451068748 2.000000e-03 54.7
42 TraesCS7A01G562200 chr6B 79.412 170 23 7 735 894 699293059 699292892 3.720000e-20 110.0
43 TraesCS7A01G562200 chr6B 86.747 83 11 0 1419 1501 57698370 57698452 3.750000e-15 93.5
44 TraesCS7A01G562200 chr6B 81.928 83 13 2 130 211 63661739 63661820 6.320000e-08 69.4
45 TraesCS7A01G562200 chr5B 90.278 72 6 1 732 803 585830176 585830246 3.750000e-15 93.5
46 TraesCS7A01G562200 chr5B 86.364 66 8 1 741 806 149908328 149908264 1.760000e-08 71.3
47 TraesCS7A01G562200 chrUn 87.179 78 6 3 837 913 46119913 46119839 6.280000e-13 86.1
48 TraesCS7A01G562200 chr4A 89.855 69 4 2 820 887 472941812 472941878 6.280000e-13 86.1
49 TraesCS7A01G562200 chr4A 89.706 68 6 1 820 887 472943048 472943114 6.280000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G562200 chr7A 732970451 732973979 3528 False 6517.0 6517 100.000 1 3529 1 chr7A.!!$F2 3528
1 TraesCS7A01G562200 chr7A 733079319 733080703 1384 False 1171.0 1171 82.395 1186 2551 1 chr7A.!!$F3 1365
2 TraesCS7A01G562200 chr7B 750104458 750106704 2246 True 1524.5 2433 89.972 336 2642 2 chr7B.!!$R3 2306
3 TraesCS7A01G562200 chr7B 750095110 750096498 1388 True 1260.0 1260 83.357 1173 2551 1 chr7B.!!$R2 1378
4 TraesCS7A01G562200 chr2A 743019282 743020192 910 True 1439.0 1439 95.181 2618 3529 1 chr2A.!!$R4 911
5 TraesCS7A01G562200 chr2A 515466341 515467262 921 True 1423.0 1423 94.577 2611 3529 1 chr2A.!!$R3 918
6 TraesCS7A01G562200 chr2A 230759692 230760612 920 True 1411.0 1411 94.360 2611 3529 1 chr2A.!!$R1 918
7 TraesCS7A01G562200 chr3A 697933461 697934381 920 False 1424.0 1424 94.589 2608 3529 1 chr3A.!!$F2 921
8 TraesCS7A01G562200 chr3A 88125477 88126399 922 True 1421.0 1421 94.481 2609 3529 1 chr3A.!!$R1 920
9 TraesCS7A01G562200 chr3A 216708432 216709355 923 False 1411.0 1411 94.264 2608 3529 1 chr3A.!!$F1 921
10 TraesCS7A01G562200 chr5A 402058585 402059503 918 True 1413.0 1413 94.450 2613 3529 1 chr5A.!!$R2 916
11 TraesCS7A01G562200 chr5A 265966869 265967790 921 True 1406.0 1406 94.252 2611 3529 1 chr5A.!!$R1 918
12 TraesCS7A01G562200 chr1A 351136260 351137182 922 False 1410.0 1410 94.264 2608 3529 1 chr1A.!!$F1 921
13 TraesCS7A01G562200 chr7D 633615817 633617069 1252 True 1144.0 1144 83.268 1283 2551 1 chr7D.!!$R3 1268

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
333 334 0.107312 GATGGATGCTGGCACTGTCT 60.107 55.0 0.00 0.0 0.00 3.41 F
2066 2122 0.038526 ACTGACTACGAAGGCAACGG 60.039 55.0 8.04 0.0 41.41 4.44 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2327 2388 0.035630 CTGGCAGGAGTTCCAAGGAG 60.036 60.0 6.61 0.0 38.89 3.69 R
3204 3272 0.872388 GAAAATGCGAACTCGGTGGT 59.128 50.0 0.69 0.0 40.23 4.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.364972 AAGACCTGACTTTGGGTTGG 57.635 50.000 0.00 0.00 35.77 3.77
21 22 0.178990 AGACCTGACTTTGGGTTGGC 60.179 55.000 0.00 0.00 35.77 4.52
22 23 1.515521 GACCTGACTTTGGGTTGGCG 61.516 60.000 0.00 0.00 35.77 5.69
23 24 1.228124 CCTGACTTTGGGTTGGCGA 60.228 57.895 0.00 0.00 0.00 5.54
24 25 1.515521 CCTGACTTTGGGTTGGCGAC 61.516 60.000 0.00 0.00 0.00 5.19
25 26 0.817634 CTGACTTTGGGTTGGCGACA 60.818 55.000 7.28 0.00 39.83 4.35
26 27 0.817634 TGACTTTGGGTTGGCGACAG 60.818 55.000 7.28 0.00 44.54 3.51
27 28 0.534203 GACTTTGGGTTGGCGACAGA 60.534 55.000 7.28 0.00 44.54 3.41
28 29 0.535102 ACTTTGGGTTGGCGACAGAG 60.535 55.000 7.28 1.34 44.54 3.35
29 30 0.535102 CTTTGGGTTGGCGACAGAGT 60.535 55.000 7.28 0.00 44.54 3.24
30 31 0.534203 TTTGGGTTGGCGACAGAGTC 60.534 55.000 7.28 0.00 44.54 3.36
40 41 3.854119 GACAGAGTCGTAGTCGTCG 57.146 57.895 0.00 0.00 38.33 5.12
41 42 0.247223 GACAGAGTCGTAGTCGTCGC 60.247 60.000 0.00 0.00 38.33 5.19
42 43 0.947660 ACAGAGTCGTAGTCGTCGCA 60.948 55.000 0.00 0.00 38.33 5.10
43 44 0.374063 CAGAGTCGTAGTCGTCGCAT 59.626 55.000 0.00 0.00 38.33 4.73
44 45 0.651551 AGAGTCGTAGTCGTCGCATC 59.348 55.000 0.00 0.00 38.33 3.91
45 46 0.316032 GAGTCGTAGTCGTCGCATCC 60.316 60.000 0.00 0.00 38.33 3.51
46 47 1.298190 GTCGTAGTCGTCGCATCCC 60.298 63.158 0.00 0.00 38.33 3.85
47 48 2.025727 CGTAGTCGTCGCATCCCC 59.974 66.667 0.00 0.00 0.00 4.81
48 49 2.416260 GTAGTCGTCGCATCCCCC 59.584 66.667 0.00 0.00 0.00 5.40
49 50 2.125961 GTAGTCGTCGCATCCCCCT 61.126 63.158 0.00 0.00 0.00 4.79
50 51 1.380785 TAGTCGTCGCATCCCCCTT 60.381 57.895 0.00 0.00 0.00 3.95
51 52 0.974010 TAGTCGTCGCATCCCCCTTT 60.974 55.000 0.00 0.00 0.00 3.11
52 53 2.106683 GTCGTCGCATCCCCCTTTG 61.107 63.158 0.00 0.00 0.00 2.77
53 54 2.824041 CGTCGCATCCCCCTTTGG 60.824 66.667 0.00 0.00 0.00 3.28
64 65 3.737172 CCTTTGGGGCGTCGCTTG 61.737 66.667 18.11 1.44 0.00 4.01
65 66 3.737172 CTTTGGGGCGTCGCTTGG 61.737 66.667 18.11 0.00 0.00 3.61
66 67 4.257654 TTTGGGGCGTCGCTTGGA 62.258 61.111 18.11 0.00 0.00 3.53
67 68 3.776347 TTTGGGGCGTCGCTTGGAA 62.776 57.895 18.11 4.97 0.00 3.53
68 69 4.697756 TGGGGCGTCGCTTGGAAG 62.698 66.667 18.11 0.00 0.00 3.46
69 70 4.388499 GGGGCGTCGCTTGGAAGA 62.388 66.667 18.11 0.00 0.00 2.87
70 71 2.815647 GGGCGTCGCTTGGAAGAG 60.816 66.667 18.11 0.00 0.00 2.85
71 72 2.048127 GGCGTCGCTTGGAAGAGT 60.048 61.111 18.11 0.00 0.00 3.24
72 73 1.668151 GGCGTCGCTTGGAAGAGTT 60.668 57.895 18.11 0.00 0.00 3.01
73 74 1.228657 GGCGTCGCTTGGAAGAGTTT 61.229 55.000 18.11 0.00 0.00 2.66
74 75 0.586802 GCGTCGCTTGGAAGAGTTTT 59.413 50.000 10.68 0.00 0.00 2.43
75 76 1.660333 GCGTCGCTTGGAAGAGTTTTG 60.660 52.381 10.68 0.00 0.00 2.44
76 77 1.864711 CGTCGCTTGGAAGAGTTTTGA 59.135 47.619 0.00 0.00 0.00 2.69
77 78 2.480419 CGTCGCTTGGAAGAGTTTTGAT 59.520 45.455 0.00 0.00 0.00 2.57
78 79 3.423645 CGTCGCTTGGAAGAGTTTTGATC 60.424 47.826 0.00 0.00 0.00 2.92
79 80 3.748568 GTCGCTTGGAAGAGTTTTGATCT 59.251 43.478 0.00 0.00 0.00 2.75
80 81 4.214332 GTCGCTTGGAAGAGTTTTGATCTT 59.786 41.667 0.00 0.00 39.69 2.40
81 82 4.214119 TCGCTTGGAAGAGTTTTGATCTTG 59.786 41.667 0.00 0.00 37.14 3.02
82 83 4.023707 CGCTTGGAAGAGTTTTGATCTTGT 60.024 41.667 0.00 0.00 37.14 3.16
83 84 5.506317 CGCTTGGAAGAGTTTTGATCTTGTT 60.506 40.000 0.00 0.00 37.14 2.83
84 85 5.917447 GCTTGGAAGAGTTTTGATCTTGTTC 59.083 40.000 0.00 0.00 37.14 3.18
85 86 6.238869 GCTTGGAAGAGTTTTGATCTTGTTCT 60.239 38.462 0.00 0.00 37.14 3.01
86 87 6.624352 TGGAAGAGTTTTGATCTTGTTCTG 57.376 37.500 0.00 0.00 37.14 3.02
87 88 5.532406 TGGAAGAGTTTTGATCTTGTTCTGG 59.468 40.000 0.00 0.00 37.14 3.86
88 89 5.444663 AAGAGTTTTGATCTTGTTCTGGC 57.555 39.130 0.00 0.00 35.70 4.85
89 90 4.464008 AGAGTTTTGATCTTGTTCTGGCA 58.536 39.130 0.00 0.00 0.00 4.92
90 91 5.075493 AGAGTTTTGATCTTGTTCTGGCAT 58.925 37.500 0.00 0.00 0.00 4.40
91 92 5.537674 AGAGTTTTGATCTTGTTCTGGCATT 59.462 36.000 0.00 0.00 0.00 3.56
92 93 5.776744 AGTTTTGATCTTGTTCTGGCATTC 58.223 37.500 0.00 0.00 0.00 2.67
93 94 5.537674 AGTTTTGATCTTGTTCTGGCATTCT 59.462 36.000 0.00 0.00 0.00 2.40
94 95 6.716628 AGTTTTGATCTTGTTCTGGCATTCTA 59.283 34.615 0.00 0.00 0.00 2.10
95 96 7.395489 AGTTTTGATCTTGTTCTGGCATTCTAT 59.605 33.333 0.00 0.00 0.00 1.98
96 97 6.688637 TTGATCTTGTTCTGGCATTCTATG 57.311 37.500 0.00 0.00 0.00 2.23
97 98 5.128205 TGATCTTGTTCTGGCATTCTATGG 58.872 41.667 0.00 0.00 0.00 2.74
98 99 3.889815 TCTTGTTCTGGCATTCTATGGG 58.110 45.455 0.00 0.00 0.00 4.00
99 100 2.057137 TGTTCTGGCATTCTATGGGC 57.943 50.000 0.00 0.00 0.00 5.36
100 101 1.565759 TGTTCTGGCATTCTATGGGCT 59.434 47.619 0.00 0.00 0.00 5.19
101 102 1.952296 GTTCTGGCATTCTATGGGCTG 59.048 52.381 0.00 0.00 0.00 4.85
102 103 0.475475 TCTGGCATTCTATGGGCTGG 59.525 55.000 0.00 0.00 0.00 4.85
103 104 0.475475 CTGGCATTCTATGGGCTGGA 59.525 55.000 0.00 0.00 0.00 3.86
104 105 0.183492 TGGCATTCTATGGGCTGGAC 59.817 55.000 0.00 0.00 0.00 4.02
105 106 0.886490 GGCATTCTATGGGCTGGACG 60.886 60.000 0.00 0.00 0.00 4.79
106 107 1.510480 GCATTCTATGGGCTGGACGC 61.510 60.000 0.00 0.00 38.13 5.19
107 108 0.107456 CATTCTATGGGCTGGACGCT 59.893 55.000 0.00 0.00 39.13 5.07
108 109 0.394565 ATTCTATGGGCTGGACGCTC 59.605 55.000 0.00 0.00 40.51 5.03
113 114 4.021925 GGGCTGGACGCTCACCTT 62.022 66.667 0.00 0.00 39.60 3.50
114 115 2.743928 GGCTGGACGCTCACCTTG 60.744 66.667 0.00 0.00 39.13 3.61
115 116 3.426568 GCTGGACGCTCACCTTGC 61.427 66.667 0.00 0.00 35.14 4.01
116 117 2.345244 CTGGACGCTCACCTTGCT 59.655 61.111 0.00 0.00 0.00 3.91
117 118 1.302033 CTGGACGCTCACCTTGCTT 60.302 57.895 0.00 0.00 0.00 3.91
118 119 1.572085 CTGGACGCTCACCTTGCTTG 61.572 60.000 0.00 0.00 0.00 4.01
119 120 2.328099 GGACGCTCACCTTGCTTGG 61.328 63.158 0.00 0.00 0.00 3.61
120 121 2.281761 ACGCTCACCTTGCTTGGG 60.282 61.111 1.00 0.00 0.00 4.12
121 122 2.032528 CGCTCACCTTGCTTGGGA 59.967 61.111 1.00 0.00 0.00 4.37
122 123 1.377725 CGCTCACCTTGCTTGGGAT 60.378 57.895 1.00 0.00 0.00 3.85
123 124 1.651240 CGCTCACCTTGCTTGGGATG 61.651 60.000 1.00 0.00 0.00 3.51
124 125 0.610232 GCTCACCTTGCTTGGGATGT 60.610 55.000 1.00 0.00 0.00 3.06
125 126 1.915141 CTCACCTTGCTTGGGATGTT 58.085 50.000 1.00 0.00 0.00 2.71
126 127 1.815003 CTCACCTTGCTTGGGATGTTC 59.185 52.381 1.00 0.00 0.00 3.18
127 128 0.890683 CACCTTGCTTGGGATGTTCC 59.109 55.000 1.00 0.00 35.23 3.62
128 129 0.609131 ACCTTGCTTGGGATGTTCCG 60.609 55.000 1.00 0.00 37.43 4.30
129 130 1.315257 CCTTGCTTGGGATGTTCCGG 61.315 60.000 0.00 0.00 37.43 5.14
130 131 1.304052 TTGCTTGGGATGTTCCGGG 60.304 57.895 0.00 0.00 37.43 5.73
131 132 2.440247 GCTTGGGATGTTCCGGGG 60.440 66.667 0.00 0.00 37.43 5.73
132 133 2.275418 CTTGGGATGTTCCGGGGG 59.725 66.667 0.00 0.00 37.43 5.40
133 134 2.204167 TTGGGATGTTCCGGGGGA 60.204 61.111 0.00 0.00 37.43 4.81
134 135 1.621205 TTGGGATGTTCCGGGGGAT 60.621 57.895 0.00 0.00 37.43 3.85
135 136 0.327673 TTGGGATGTTCCGGGGGATA 60.328 55.000 0.00 0.00 37.43 2.59
136 137 1.057851 TGGGATGTTCCGGGGGATAC 61.058 60.000 0.00 0.00 37.43 2.24
163 164 3.539842 GGGTCTCCCAGATCGGAC 58.460 66.667 5.32 2.31 44.65 4.79
164 165 1.381327 GGGTCTCCCAGATCGGACA 60.381 63.158 5.32 0.00 44.65 4.02
165 166 0.976073 GGGTCTCCCAGATCGGACAA 60.976 60.000 5.32 0.00 44.65 3.18
166 167 1.123928 GGTCTCCCAGATCGGACAAT 58.876 55.000 5.32 0.00 36.56 2.71
167 168 1.202580 GGTCTCCCAGATCGGACAATG 60.203 57.143 5.32 0.00 36.56 2.82
168 169 1.757118 GTCTCCCAGATCGGACAATGA 59.243 52.381 5.32 0.00 36.56 2.57
169 170 1.757118 TCTCCCAGATCGGACAATGAC 59.243 52.381 5.32 0.00 36.56 3.06
170 171 0.459899 TCCCAGATCGGACAATGACG 59.540 55.000 5.32 0.00 36.56 4.35
171 172 0.530650 CCCAGATCGGACAATGACGG 60.531 60.000 5.32 0.00 36.56 4.79
172 173 0.175760 CCAGATCGGACAATGACGGT 59.824 55.000 0.00 0.00 36.56 4.83
173 174 1.280982 CAGATCGGACAATGACGGTG 58.719 55.000 0.00 0.00 0.00 4.94
174 175 0.895530 AGATCGGACAATGACGGTGT 59.104 50.000 0.00 0.00 0.00 4.16
175 176 2.097036 AGATCGGACAATGACGGTGTA 58.903 47.619 0.00 0.00 0.00 2.90
176 177 2.693591 AGATCGGACAATGACGGTGTAT 59.306 45.455 0.00 0.00 0.00 2.29
177 178 3.132289 AGATCGGACAATGACGGTGTATT 59.868 43.478 0.00 0.00 0.00 1.89
178 179 3.322211 TCGGACAATGACGGTGTATTT 57.678 42.857 0.00 0.00 0.00 1.40
179 180 4.453177 TCGGACAATGACGGTGTATTTA 57.547 40.909 0.00 0.00 0.00 1.40
180 181 4.426416 TCGGACAATGACGGTGTATTTAG 58.574 43.478 0.00 0.00 0.00 1.85
181 182 4.082081 TCGGACAATGACGGTGTATTTAGT 60.082 41.667 0.00 0.00 0.00 2.24
182 183 4.032445 CGGACAATGACGGTGTATTTAGTG 59.968 45.833 0.00 0.00 0.00 2.74
183 184 5.172934 GGACAATGACGGTGTATTTAGTGA 58.827 41.667 0.00 0.00 0.00 3.41
184 185 5.640357 GGACAATGACGGTGTATTTAGTGAA 59.360 40.000 0.00 0.00 0.00 3.18
185 186 6.183360 GGACAATGACGGTGTATTTAGTGAAG 60.183 42.308 0.00 0.00 0.00 3.02
186 187 6.228258 ACAATGACGGTGTATTTAGTGAAGT 58.772 36.000 0.00 0.00 0.00 3.01
187 188 6.708949 ACAATGACGGTGTATTTAGTGAAGTT 59.291 34.615 0.00 0.00 0.00 2.66
188 189 6.963049 ATGACGGTGTATTTAGTGAAGTTC 57.037 37.500 0.00 0.00 0.00 3.01
189 190 6.092955 TGACGGTGTATTTAGTGAAGTTCT 57.907 37.500 4.17 0.00 0.00 3.01
190 191 6.154445 TGACGGTGTATTTAGTGAAGTTCTC 58.846 40.000 4.17 0.09 0.00 2.87
191 192 5.476614 ACGGTGTATTTAGTGAAGTTCTCC 58.523 41.667 4.17 0.00 0.00 3.71
192 193 4.868734 CGGTGTATTTAGTGAAGTTCTCCC 59.131 45.833 4.17 0.00 0.00 4.30
193 194 5.337330 CGGTGTATTTAGTGAAGTTCTCCCT 60.337 44.000 4.17 0.48 0.00 4.20
194 195 6.107343 GGTGTATTTAGTGAAGTTCTCCCTC 58.893 44.000 4.17 0.00 0.00 4.30
195 196 6.107343 GTGTATTTAGTGAAGTTCTCCCTCC 58.893 44.000 4.17 0.00 0.00 4.30
196 197 4.846168 ATTTAGTGAAGTTCTCCCTCCC 57.154 45.455 4.17 0.00 0.00 4.30
197 198 1.848652 TAGTGAAGTTCTCCCTCCCG 58.151 55.000 4.17 0.00 0.00 5.14
198 199 0.905337 AGTGAAGTTCTCCCTCCCGG 60.905 60.000 4.17 0.00 0.00 5.73
209 210 4.109675 CTCCCGGGGGCATCGTTT 62.110 66.667 23.50 0.00 34.68 3.60
210 211 3.638592 CTCCCGGGGGCATCGTTTT 62.639 63.158 23.50 0.00 34.68 2.43
211 212 2.260088 CTCCCGGGGGCATCGTTTTA 62.260 60.000 23.50 0.00 34.68 1.52
212 213 1.378778 CCCGGGGGCATCGTTTTAA 60.379 57.895 14.71 0.00 0.00 1.52
213 214 0.966370 CCCGGGGGCATCGTTTTAAA 60.966 55.000 14.71 0.00 0.00 1.52
214 215 0.889306 CCGGGGGCATCGTTTTAAAA 59.111 50.000 0.00 0.00 0.00 1.52
215 216 1.478916 CCGGGGGCATCGTTTTAAAAT 59.521 47.619 3.52 0.00 0.00 1.82
216 217 2.688958 CCGGGGGCATCGTTTTAAAATA 59.311 45.455 3.52 0.00 0.00 1.40
217 218 3.489568 CCGGGGGCATCGTTTTAAAATAC 60.490 47.826 3.52 0.00 0.00 1.89
218 219 3.379057 CGGGGGCATCGTTTTAAAATACT 59.621 43.478 3.52 0.00 0.00 2.12
219 220 4.678622 GGGGGCATCGTTTTAAAATACTG 58.321 43.478 3.52 3.53 0.00 2.74
220 221 4.158949 GGGGGCATCGTTTTAAAATACTGT 59.841 41.667 3.52 0.00 0.00 3.55
221 222 5.336929 GGGGGCATCGTTTTAAAATACTGTT 60.337 40.000 3.52 0.00 0.00 3.16
222 223 6.127675 GGGGGCATCGTTTTAAAATACTGTTA 60.128 38.462 3.52 0.00 0.00 2.41
223 224 7.314393 GGGGCATCGTTTTAAAATACTGTTAA 58.686 34.615 3.52 0.00 0.00 2.01
224 225 7.274033 GGGGCATCGTTTTAAAATACTGTTAAC 59.726 37.037 3.52 0.00 0.00 2.01
225 226 8.024865 GGGCATCGTTTTAAAATACTGTTAACT 58.975 33.333 7.22 0.00 0.00 2.24
226 227 8.846607 GGCATCGTTTTAAAATACTGTTAACTG 58.153 33.333 10.63 10.63 0.00 3.16
227 228 8.846607 GCATCGTTTTAAAATACTGTTAACTGG 58.153 33.333 15.84 7.38 0.00 4.00
228 229 9.337091 CATCGTTTTAAAATACTGTTAACTGGG 57.663 33.333 15.84 5.14 0.00 4.45
229 230 7.873910 TCGTTTTAAAATACTGTTAACTGGGG 58.126 34.615 15.84 2.94 0.00 4.96
230 231 7.501892 TCGTTTTAAAATACTGTTAACTGGGGT 59.498 33.333 15.84 7.99 0.00 4.95
231 232 7.592164 CGTTTTAAAATACTGTTAACTGGGGTG 59.408 37.037 15.84 0.00 0.00 4.61
232 233 7.527568 TTTAAAATACTGTTAACTGGGGTGG 57.472 36.000 15.84 0.00 0.00 4.61
233 234 2.801077 ATACTGTTAACTGGGGTGGC 57.199 50.000 15.84 0.00 0.00 5.01
234 235 0.322322 TACTGTTAACTGGGGTGGCG 59.678 55.000 15.84 0.00 0.00 5.69
235 236 1.674322 CTGTTAACTGGGGTGGCGG 60.674 63.158 7.22 0.00 0.00 6.13
236 237 2.119484 CTGTTAACTGGGGTGGCGGA 62.119 60.000 7.22 0.00 0.00 5.54
237 238 1.376812 GTTAACTGGGGTGGCGGAG 60.377 63.158 0.00 0.00 0.00 4.63
250 251 3.181367 CGGAGCATGAGGTTGTGC 58.819 61.111 0.00 0.00 41.57 4.57
251 252 2.743752 CGGAGCATGAGGTTGTGCG 61.744 63.158 0.00 0.00 45.69 5.34
252 253 2.401766 GGAGCATGAGGTTGTGCGG 61.402 63.158 0.00 0.00 45.69 5.69
253 254 1.672356 GAGCATGAGGTTGTGCGGT 60.672 57.895 0.00 0.00 45.69 5.68
254 255 1.915614 GAGCATGAGGTTGTGCGGTG 61.916 60.000 0.00 0.00 45.69 4.94
255 256 2.260869 GCATGAGGTTGTGCGGTGT 61.261 57.895 0.00 0.00 0.00 4.16
256 257 1.575922 CATGAGGTTGTGCGGTGTG 59.424 57.895 0.00 0.00 0.00 3.82
257 258 1.600636 ATGAGGTTGTGCGGTGTGG 60.601 57.895 0.00 0.00 0.00 4.17
258 259 3.660111 GAGGTTGTGCGGTGTGGC 61.660 66.667 0.00 0.00 0.00 5.01
259 260 4.497984 AGGTTGTGCGGTGTGGCA 62.498 61.111 0.00 0.00 41.45 4.92
260 261 3.294493 GGTTGTGCGGTGTGGCAT 61.294 61.111 0.00 0.00 45.99 4.40
261 262 2.255252 GTTGTGCGGTGTGGCATC 59.745 61.111 0.00 0.00 45.99 3.91
262 263 2.112928 TTGTGCGGTGTGGCATCT 59.887 55.556 0.00 0.00 45.99 2.90
263 264 1.965930 TTGTGCGGTGTGGCATCTC 60.966 57.895 0.00 0.00 45.99 2.75
264 265 2.046892 GTGCGGTGTGGCATCTCT 60.047 61.111 0.00 0.00 45.99 3.10
265 266 1.672356 GTGCGGTGTGGCATCTCTT 60.672 57.895 0.00 0.00 45.99 2.85
266 267 1.672030 TGCGGTGTGGCATCTCTTG 60.672 57.895 0.00 0.00 38.17 3.02
284 285 4.201679 CGTCAGCGATGGCGGGTA 62.202 66.667 21.57 0.00 46.35 3.69
285 286 2.421739 GTCAGCGATGGCGGGTAT 59.578 61.111 0.00 0.00 46.35 2.73
286 287 1.227556 GTCAGCGATGGCGGGTATT 60.228 57.895 0.00 0.00 46.35 1.89
287 288 1.227527 TCAGCGATGGCGGGTATTG 60.228 57.895 0.00 0.00 46.35 1.90
288 289 2.111043 AGCGATGGCGGGTATTGG 59.889 61.111 0.00 0.00 46.35 3.16
289 290 3.660111 GCGATGGCGGGTATTGGC 61.660 66.667 0.00 0.00 38.16 4.52
290 291 3.345808 CGATGGCGGGTATTGGCG 61.346 66.667 0.00 0.00 34.03 5.69
291 292 2.978010 GATGGCGGGTATTGGCGG 60.978 66.667 0.00 0.00 34.03 6.13
309 310 4.910585 CGTGGCATAGCGGGGTCC 62.911 72.222 0.00 0.00 0.00 4.46
310 311 3.480133 GTGGCATAGCGGGGTCCT 61.480 66.667 0.00 0.00 0.00 3.85
311 312 3.479203 TGGCATAGCGGGGTCCTG 61.479 66.667 0.00 0.00 0.00 3.86
312 313 4.256180 GGCATAGCGGGGTCCTGG 62.256 72.222 0.00 0.00 0.00 4.45
313 314 4.937431 GCATAGCGGGGTCCTGGC 62.937 72.222 0.00 0.00 0.00 4.85
314 315 4.609018 CATAGCGGGGTCCTGGCG 62.609 72.222 0.00 0.00 0.00 5.69
315 316 4.853142 ATAGCGGGGTCCTGGCGA 62.853 66.667 0.00 0.00 0.00 5.54
316 317 4.853142 TAGCGGGGTCCTGGCGAT 62.853 66.667 0.00 0.00 0.00 4.58
320 321 3.171388 GGGGTCCTGGCGATGGAT 61.171 66.667 0.00 0.00 35.87 3.41
321 322 2.111878 GGGTCCTGGCGATGGATG 59.888 66.667 0.00 0.00 35.87 3.51
322 323 2.592861 GGTCCTGGCGATGGATGC 60.593 66.667 0.00 0.00 35.87 3.91
323 324 2.507944 GTCCTGGCGATGGATGCT 59.492 61.111 0.00 0.00 35.87 3.79
324 325 1.890979 GTCCTGGCGATGGATGCTG 60.891 63.158 0.00 0.00 35.87 4.41
325 326 2.593725 CCTGGCGATGGATGCTGG 60.594 66.667 0.00 0.00 0.00 4.85
326 327 3.285215 CTGGCGATGGATGCTGGC 61.285 66.667 0.00 0.00 0.00 4.85
327 328 4.112433 TGGCGATGGATGCTGGCA 62.112 61.111 0.00 0.00 34.24 4.92
328 329 3.589881 GGCGATGGATGCTGGCAC 61.590 66.667 0.00 0.00 0.00 5.01
329 330 2.515523 GCGATGGATGCTGGCACT 60.516 61.111 0.00 0.00 0.00 4.40
330 331 2.831366 GCGATGGATGCTGGCACTG 61.831 63.158 0.00 0.00 0.00 3.66
331 332 1.450848 CGATGGATGCTGGCACTGT 60.451 57.895 0.00 0.00 0.00 3.55
332 333 1.434622 CGATGGATGCTGGCACTGTC 61.435 60.000 0.00 0.00 0.00 3.51
333 334 0.107312 GATGGATGCTGGCACTGTCT 60.107 55.000 0.00 0.00 0.00 3.41
334 335 1.139654 GATGGATGCTGGCACTGTCTA 59.860 52.381 0.00 0.00 0.00 2.59
335 336 0.538584 TGGATGCTGGCACTGTCTAG 59.461 55.000 0.00 0.00 0.00 2.43
336 337 0.813210 GGATGCTGGCACTGTCTAGC 60.813 60.000 0.00 8.06 40.45 3.42
337 338 1.150567 GATGCTGGCACTGTCTAGCG 61.151 60.000 0.00 0.00 42.57 4.26
338 339 1.892819 ATGCTGGCACTGTCTAGCGT 61.893 55.000 0.00 7.43 42.57 5.07
339 340 1.807573 GCTGGCACTGTCTAGCGTC 60.808 63.158 0.00 0.00 31.09 5.19
340 341 1.515088 CTGGCACTGTCTAGCGTCG 60.515 63.158 0.00 0.00 0.00 5.12
341 342 1.923227 CTGGCACTGTCTAGCGTCGA 61.923 60.000 0.00 0.00 0.00 4.20
342 343 1.226435 GGCACTGTCTAGCGTCGAG 60.226 63.158 0.00 0.00 0.00 4.04
343 344 1.226435 GCACTGTCTAGCGTCGAGG 60.226 63.158 0.00 0.00 0.00 4.63
344 345 1.645704 GCACTGTCTAGCGTCGAGGA 61.646 60.000 9.75 0.00 0.00 3.71
345 346 1.018148 CACTGTCTAGCGTCGAGGAT 58.982 55.000 9.75 4.96 0.00 3.24
346 347 2.210961 CACTGTCTAGCGTCGAGGATA 58.789 52.381 9.75 6.06 0.00 2.59
347 348 2.222213 CACTGTCTAGCGTCGAGGATAG 59.778 54.545 21.15 21.15 0.00 2.08
348 349 2.158928 ACTGTCTAGCGTCGAGGATAGT 60.159 50.000 24.67 9.92 0.00 2.12
349 350 2.873472 CTGTCTAGCGTCGAGGATAGTT 59.127 50.000 24.67 2.06 0.00 2.24
350 351 4.056740 CTGTCTAGCGTCGAGGATAGTTA 58.943 47.826 24.67 15.84 0.00 2.24
393 394 4.998671 TGATCTGTCCTGAAGATGAGAC 57.001 45.455 0.00 0.00 34.50 3.36
394 395 4.347607 TGATCTGTCCTGAAGATGAGACA 58.652 43.478 0.00 0.00 34.50 3.41
395 396 4.774200 TGATCTGTCCTGAAGATGAGACAA 59.226 41.667 0.00 0.00 38.68 3.18
400 401 2.897326 TCCTGAAGATGAGACAACGGAA 59.103 45.455 0.00 0.00 0.00 4.30
407 408 1.934589 TGAGACAACGGAATATGGCG 58.065 50.000 0.00 0.00 0.00 5.69
409 410 0.814010 AGACAACGGAATATGGCGGC 60.814 55.000 0.00 0.00 0.00 6.53
411 412 2.590575 AACGGAATATGGCGGCGG 60.591 61.111 9.78 0.00 0.00 6.13
429 430 2.296480 GCGGATTCTAGAGCGTGCG 61.296 63.158 10.07 10.07 0.00 5.34
433 434 1.335964 GGATTCTAGAGCGTGCGCATA 60.336 52.381 15.91 0.00 44.88 3.14
447 448 2.802667 GCATACGGTGTGCGCTGAG 61.803 63.158 14.06 0.00 32.29 3.35
474 475 0.738975 TAGATCGGTTGGTGCTCTCG 59.261 55.000 0.00 0.00 0.00 4.04
485 486 3.184683 GCTCTCGGCTCGCAGTTG 61.185 66.667 0.00 0.00 38.06 3.16
547 548 2.104859 CGCCAGTGCACTCCATCAG 61.105 63.158 18.64 4.31 37.32 2.90
562 563 4.537751 TCCATCAGAGTTGTAGGTCTAGG 58.462 47.826 0.00 0.00 0.00 3.02
567 568 4.956700 TCAGAGTTGTAGGTCTAGGGATTG 59.043 45.833 0.00 0.00 0.00 2.67
611 612 2.037772 GGGTCGATCCATGTATCTGCTT 59.962 50.000 10.69 0.00 38.11 3.91
623 624 4.814147 TGTATCTGCTTTGTCAGACTCTG 58.186 43.478 1.31 0.00 44.88 3.35
629 630 3.623060 TGCTTTGTCAGACTCTGTTGAAC 59.377 43.478 5.94 0.00 32.61 3.18
669 670 3.799963 GGTTGTATGCATCGATTGACGTA 59.200 43.478 0.19 0.00 43.13 3.57
678 679 1.067582 GATTGACGTAGAGGCCCGG 59.932 63.158 0.00 0.00 0.00 5.73
693 694 1.341679 GCCCGGGGTAATCCTTCTTTT 60.342 52.381 25.28 0.00 35.33 2.27
694 695 2.651455 CCCGGGGTAATCCTTCTTTTC 58.349 52.381 14.71 0.00 35.33 2.29
695 696 2.025699 CCCGGGGTAATCCTTCTTTTCA 60.026 50.000 14.71 0.00 35.33 2.69
698 699 4.525100 CCGGGGTAATCCTTCTTTTCAAAA 59.475 41.667 0.00 0.00 35.33 2.44
743 744 4.130857 GCAAGCTAAGATTTACTCCCTCC 58.869 47.826 0.00 0.00 0.00 4.30
744 745 4.141597 GCAAGCTAAGATTTACTCCCTCCT 60.142 45.833 0.00 0.00 0.00 3.69
750 751 6.295973 GCTAAGATTTACTCCCTCCTATTCCC 60.296 46.154 0.00 0.00 0.00 3.97
758 759 9.468357 TTTACTCCCTCCTATTCCCAAATATAA 57.532 33.333 0.00 0.00 0.00 0.98
783 784 4.101585 TCTTTGTAGAGATGCCACTATGGG 59.898 45.833 0.00 0.00 38.19 4.00
792 793 3.305709 CCACTATGGGCCACATACG 57.694 57.895 9.28 7.02 41.03 3.06
793 794 0.250295 CCACTATGGGCCACATACGG 60.250 60.000 9.28 1.81 41.03 4.02
794 795 0.756294 CACTATGGGCCACATACGGA 59.244 55.000 9.28 0.00 41.03 4.69
795 796 1.347707 CACTATGGGCCACATACGGAT 59.652 52.381 9.28 0.00 41.03 4.18
796 797 1.347707 ACTATGGGCCACATACGGATG 59.652 52.381 9.28 5.94 41.03 3.51
803 804 4.404394 TGGGCCACATACGGATGTATATAG 59.596 45.833 14.23 0.00 44.82 1.31
805 806 5.304614 GGGCCACATACGGATGTATATAGAT 59.695 44.000 14.23 0.00 44.82 1.98
806 807 6.492429 GGGCCACATACGGATGTATATAGATA 59.508 42.308 14.23 0.00 44.82 1.98
807 808 7.368833 GGCCACATACGGATGTATATAGATAC 58.631 42.308 14.23 0.35 44.82 2.24
808 809 7.368833 GCCACATACGGATGTATATAGATACC 58.631 42.308 14.23 0.00 44.82 2.73
809 810 7.013942 GCCACATACGGATGTATATAGATACCA 59.986 40.741 14.23 0.00 44.82 3.25
825 826 8.734218 ATAGATACCACTATAGACCACATACG 57.266 38.462 6.78 0.00 32.21 3.06
826 827 6.776744 AGATACCACTATAGACCACATACGA 58.223 40.000 6.78 0.00 0.00 3.43
827 828 7.229308 AGATACCACTATAGACCACATACGAA 58.771 38.462 6.78 0.00 0.00 3.85
828 829 7.889073 AGATACCACTATAGACCACATACGAAT 59.111 37.037 6.78 0.00 0.00 3.34
833 834 8.953313 CCACTATAGACCACATACGAATGTATA 58.047 37.037 6.78 0.00 44.70 1.47
845 846 9.696572 ACATACGAATGTATATAGGTCCATAGT 57.303 33.333 0.00 0.00 44.66 2.12
885 886 9.453830 AGACTTATATTTAAGAATGGAGGGAGT 57.546 33.333 9.58 0.00 38.56 3.85
902 903 9.892444 TGGAGGGAGTATTAGATAAGTAAATGA 57.108 33.333 0.00 0.00 0.00 2.57
921 922 4.630894 TGAAAACTTTCAAGCACGATGT 57.369 36.364 2.38 0.00 43.62 3.06
922 923 4.350346 TGAAAACTTTCAAGCACGATGTG 58.650 39.130 2.38 0.00 43.62 3.21
923 924 3.354089 AAACTTTCAAGCACGATGTGG 57.646 42.857 0.00 0.00 33.64 4.17
924 925 1.967319 ACTTTCAAGCACGATGTGGT 58.033 45.000 0.00 0.00 46.58 4.16
925 926 3.120321 ACTTTCAAGCACGATGTGGTA 57.880 42.857 1.70 0.00 43.73 3.25
926 927 3.674997 ACTTTCAAGCACGATGTGGTAT 58.325 40.909 1.70 0.00 43.73 2.73
927 928 3.436704 ACTTTCAAGCACGATGTGGTATG 59.563 43.478 1.70 4.09 43.73 2.39
928 929 1.368641 TCAAGCACGATGTGGTATGC 58.631 50.000 1.70 0.00 43.73 3.14
933 934 4.600692 AGCACGATGTGGTATGCTATAA 57.399 40.909 0.00 0.00 46.36 0.98
934 935 5.152623 AGCACGATGTGGTATGCTATAAT 57.847 39.130 0.00 0.00 46.36 1.28
935 936 5.551233 AGCACGATGTGGTATGCTATAATT 58.449 37.500 0.00 0.00 46.36 1.40
936 937 5.997746 AGCACGATGTGGTATGCTATAATTT 59.002 36.000 0.00 0.00 46.36 1.82
937 938 6.486657 AGCACGATGTGGTATGCTATAATTTT 59.513 34.615 0.00 0.00 46.36 1.82
938 939 7.659799 AGCACGATGTGGTATGCTATAATTTTA 59.340 33.333 0.00 0.00 46.36 1.52
939 940 8.450964 GCACGATGTGGTATGCTATAATTTTAT 58.549 33.333 0.00 0.00 35.16 1.40
1022 1023 0.682532 TTAAGATGCGGGCATGCCAA 60.683 50.000 36.56 22.26 36.70 4.52
1093 1094 5.708736 TGGGGCTTTAGAATCATAACTGA 57.291 39.130 0.00 0.00 35.41 3.41
1125 1126 7.586664 GTCGTTCTGAAGTTTGATTAGGAAAAC 59.413 37.037 0.00 0.00 36.69 2.43
1144 1145 2.504367 ACAAACTGAAAGCCGCAGTAT 58.496 42.857 4.41 0.00 45.27 2.12
1157 1158 5.428253 AGCCGCAGTATCTTTTCAGAATTA 58.572 37.500 0.00 0.00 30.76 1.40
1161 1162 6.313905 CCGCAGTATCTTTTCAGAATTACAGT 59.686 38.462 0.00 0.00 30.76 3.55
1162 1163 7.394872 CGCAGTATCTTTTCAGAATTACAGTC 58.605 38.462 0.00 0.00 30.76 3.51
1211 1213 6.838401 ATCTTTGGAAGTTAGGATGGAGAT 57.162 37.500 0.00 0.00 0.00 2.75
1280 1289 2.941860 GCCTTCTTCTCCTTTGCCCTAC 60.942 54.545 0.00 0.00 0.00 3.18
1294 1321 1.515081 CCCTACGTCGATCTCTCCTC 58.485 60.000 0.00 0.00 0.00 3.71
1562 1606 3.103911 GGTTCTCACGTCGTGCGG 61.104 66.667 20.56 14.77 46.52 5.69
1661 1717 2.311688 ATCCTCGCCGATCCACCAAC 62.312 60.000 0.00 0.00 0.00 3.77
1732 1788 1.609501 ACGGCTACCTGGCTCTTCA 60.610 57.895 0.00 0.00 39.32 3.02
1770 1826 3.343990 GAGACTCGTCGACATTCTTACG 58.656 50.000 17.16 0.00 36.71 3.18
1806 1862 0.410663 TACCTCCCTTCCCAGACGAA 59.589 55.000 0.00 0.00 0.00 3.85
1820 1876 4.065088 CCAGACGAAGAAAGAATGTCCAA 58.935 43.478 0.00 0.00 0.00 3.53
1925 1981 2.828868 GGCTATCATGTGCCCCGA 59.171 61.111 13.44 0.00 43.11 5.14
1969 2025 6.707440 TGACAAAGAGGCTGAAATTGTTTA 57.293 33.333 0.00 0.00 34.59 2.01
1997 2053 3.009363 CCCTATGCCATGTACCATGATGA 59.991 47.826 5.80 0.00 0.00 2.92
2039 2095 3.141398 GTGATTCTCTGTGGTGCTTCAA 58.859 45.455 0.00 0.00 0.00 2.69
2049 2105 1.344438 TGGTGCTTCAAGATGACGACT 59.656 47.619 0.00 0.00 0.00 4.18
2066 2122 0.038526 ACTGACTACGAAGGCAACGG 60.039 55.000 8.04 0.00 41.41 4.44
2083 2139 3.422303 GCGTTGATGTCGGCAGCA 61.422 61.111 2.62 2.62 39.48 4.41
2084 2140 2.780643 CGTTGATGTCGGCAGCAG 59.219 61.111 8.42 0.00 42.34 4.24
2085 2141 1.737735 CGTTGATGTCGGCAGCAGA 60.738 57.895 8.42 0.00 42.34 4.26
2170 2229 0.655733 GTCACACGGTGAGTTGTTGG 59.344 55.000 16.29 0.00 43.57 3.77
2187 2246 4.408821 GTGGCATCCGTCCTGGCA 62.409 66.667 0.00 1.96 45.68 4.92
2209 2268 2.099592 AGACCGTCTTTGTGTCGTTACA 59.900 45.455 0.00 0.00 34.24 2.41
2216 2275 5.212194 GTCTTTGTGTCGTTACAAATGCAT 58.788 37.500 16.18 0.00 46.11 3.96
2218 2277 3.822594 TGTGTCGTTACAAATGCATCC 57.177 42.857 0.00 0.00 37.36 3.51
2323 2384 0.749454 GGAGCCTAGGCAACCACATG 60.749 60.000 34.70 0.00 44.88 3.21
2425 2487 4.213906 GGCGTGTTTAGGTACAGCTTTTTA 59.786 41.667 0.00 0.00 0.00 1.52
2430 2492 7.117236 CGTGTTTAGGTACAGCTTTTTAGATGA 59.883 37.037 0.00 0.00 0.00 2.92
2601 2663 7.022055 TGCTTTTCGAAGTGAAATAGACAAA 57.978 32.000 0.00 0.00 45.62 2.83
2907 2972 8.306226 CGTGAATCGTATTTTGAATCACATTTG 58.694 33.333 10.66 0.00 43.30 2.32
2954 3019 5.852282 AATAATATGGCGTTGGAAAGCTT 57.148 34.783 0.00 0.00 0.00 3.74
3056 3123 1.018910 CAAACCGAACACCCGAGTTT 58.981 50.000 0.00 0.00 35.19 2.66
3080 3147 9.482627 TTTGTATTTTTGACGCCATTTCTAAAT 57.517 25.926 0.00 0.00 0.00 1.40
3217 3285 0.319297 ACAAGTACCACCGAGTTCGC 60.319 55.000 0.00 0.00 38.18 4.70
3264 3332 1.987770 CGTCCAAATGCAGCAAATGAC 59.012 47.619 0.00 3.46 0.00 3.06
3269 3337 3.591023 CAAATGCAGCAAATGACATGGA 58.409 40.909 0.00 0.00 0.00 3.41
3271 3339 1.179152 TGCAGCAAATGACATGGAGG 58.821 50.000 0.00 0.00 0.00 4.30
3293 3361 2.030007 TGGAAAGCTTGAAGAAATGCGG 60.030 45.455 0.00 0.00 0.00 5.69
3409 3478 3.436243 ACTTTATCGGAATGGGGCAAAA 58.564 40.909 0.00 0.00 0.00 2.44
3459 3528 7.481275 AATGCGAAACTTTTTCATGTTGATT 57.519 28.000 0.00 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.488347 GCCAACCCAAAGTCAGGTCTTA 60.488 50.000 0.00 0.00 34.45 2.10
1 2 1.754201 GCCAACCCAAAGTCAGGTCTT 60.754 52.381 0.00 0.00 34.45 3.01
2 3 0.178990 GCCAACCCAAAGTCAGGTCT 60.179 55.000 0.00 0.00 34.45 3.85
3 4 1.515521 CGCCAACCCAAAGTCAGGTC 61.516 60.000 0.00 0.00 34.45 3.85
4 5 1.528309 CGCCAACCCAAAGTCAGGT 60.528 57.895 0.00 0.00 38.27 4.00
5 6 1.228124 TCGCCAACCCAAAGTCAGG 60.228 57.895 0.00 0.00 0.00 3.86
7 8 0.817634 CTGTCGCCAACCCAAAGTCA 60.818 55.000 0.00 0.00 0.00 3.41
11 12 0.534203 GACTCTGTCGCCAACCCAAA 60.534 55.000 0.00 0.00 0.00 3.28
12 13 1.070786 GACTCTGTCGCCAACCCAA 59.929 57.895 0.00 0.00 0.00 4.12
22 23 0.247223 GCGACGACTACGACTCTGTC 60.247 60.000 0.00 0.00 42.66 3.51
23 24 0.947660 TGCGACGACTACGACTCTGT 60.948 55.000 0.00 0.00 42.66 3.41
24 25 0.374063 ATGCGACGACTACGACTCTG 59.626 55.000 0.00 0.00 42.66 3.35
25 26 0.651551 GATGCGACGACTACGACTCT 59.348 55.000 0.00 0.00 42.66 3.24
26 27 0.316032 GGATGCGACGACTACGACTC 60.316 60.000 0.00 0.00 42.66 3.36
27 28 1.712977 GGGATGCGACGACTACGACT 61.713 60.000 0.00 0.00 42.66 4.18
28 29 1.298190 GGGATGCGACGACTACGAC 60.298 63.158 0.00 0.00 42.66 4.34
29 30 2.475466 GGGGATGCGACGACTACGA 61.475 63.158 0.00 0.00 42.66 3.43
30 31 2.025727 GGGGATGCGACGACTACG 59.974 66.667 0.00 0.00 45.75 3.51
31 32 1.673808 AAGGGGGATGCGACGACTAC 61.674 60.000 0.00 0.00 0.00 2.73
32 33 0.974010 AAAGGGGGATGCGACGACTA 60.974 55.000 0.00 0.00 0.00 2.59
33 34 2.291043 AAAGGGGGATGCGACGACT 61.291 57.895 0.00 0.00 0.00 4.18
34 35 2.106683 CAAAGGGGGATGCGACGAC 61.107 63.158 0.00 0.00 0.00 4.34
35 36 2.267642 CAAAGGGGGATGCGACGA 59.732 61.111 0.00 0.00 0.00 4.20
36 37 2.824041 CCAAAGGGGGATGCGACG 60.824 66.667 0.00 0.00 0.00 5.12
47 48 3.737172 CAAGCGACGCCCCAAAGG 61.737 66.667 17.79 0.00 39.47 3.11
48 49 3.737172 CCAAGCGACGCCCCAAAG 61.737 66.667 17.79 0.00 0.00 2.77
49 50 3.776347 TTCCAAGCGACGCCCCAAA 62.776 57.895 17.79 3.65 0.00 3.28
50 51 4.257654 TTCCAAGCGACGCCCCAA 62.258 61.111 17.79 1.37 0.00 4.12
51 52 4.697756 CTTCCAAGCGACGCCCCA 62.698 66.667 17.79 0.00 0.00 4.96
52 53 4.388499 TCTTCCAAGCGACGCCCC 62.388 66.667 17.79 0.00 0.00 5.80
53 54 2.815647 CTCTTCCAAGCGACGCCC 60.816 66.667 17.79 0.00 0.00 6.13
54 55 1.228657 AAACTCTTCCAAGCGACGCC 61.229 55.000 17.79 0.00 0.00 5.68
55 56 0.586802 AAAACTCTTCCAAGCGACGC 59.413 50.000 13.03 13.03 0.00 5.19
56 57 1.864711 TCAAAACTCTTCCAAGCGACG 59.135 47.619 0.00 0.00 0.00 5.12
57 58 3.748568 AGATCAAAACTCTTCCAAGCGAC 59.251 43.478 0.00 0.00 0.00 5.19
58 59 4.008074 AGATCAAAACTCTTCCAAGCGA 57.992 40.909 0.00 0.00 0.00 4.93
59 60 4.023707 ACAAGATCAAAACTCTTCCAAGCG 60.024 41.667 0.00 0.00 30.60 4.68
60 61 5.444663 ACAAGATCAAAACTCTTCCAAGC 57.555 39.130 0.00 0.00 30.60 4.01
61 62 7.137426 CAGAACAAGATCAAAACTCTTCCAAG 58.863 38.462 0.00 0.00 30.60 3.61
62 63 6.039717 CCAGAACAAGATCAAAACTCTTCCAA 59.960 38.462 0.00 0.00 30.60 3.53
63 64 5.532406 CCAGAACAAGATCAAAACTCTTCCA 59.468 40.000 0.00 0.00 30.60 3.53
64 65 5.563671 GCCAGAACAAGATCAAAACTCTTCC 60.564 44.000 0.00 0.00 30.60 3.46
65 66 5.009010 TGCCAGAACAAGATCAAAACTCTTC 59.991 40.000 0.00 0.00 30.60 2.87
66 67 4.889409 TGCCAGAACAAGATCAAAACTCTT 59.111 37.500 0.00 0.00 33.25 2.85
67 68 4.464008 TGCCAGAACAAGATCAAAACTCT 58.536 39.130 0.00 0.00 0.00 3.24
68 69 4.836125 TGCCAGAACAAGATCAAAACTC 57.164 40.909 0.00 0.00 0.00 3.01
69 70 5.537674 AGAATGCCAGAACAAGATCAAAACT 59.462 36.000 0.00 0.00 0.00 2.66
70 71 5.776744 AGAATGCCAGAACAAGATCAAAAC 58.223 37.500 0.00 0.00 0.00 2.43
71 72 7.363181 CCATAGAATGCCAGAACAAGATCAAAA 60.363 37.037 0.00 0.00 0.00 2.44
72 73 6.095860 CCATAGAATGCCAGAACAAGATCAAA 59.904 38.462 0.00 0.00 0.00 2.69
73 74 5.591472 CCATAGAATGCCAGAACAAGATCAA 59.409 40.000 0.00 0.00 0.00 2.57
74 75 5.128205 CCATAGAATGCCAGAACAAGATCA 58.872 41.667 0.00 0.00 0.00 2.92
75 76 4.518211 CCCATAGAATGCCAGAACAAGATC 59.482 45.833 0.00 0.00 0.00 2.75
76 77 4.467769 CCCATAGAATGCCAGAACAAGAT 58.532 43.478 0.00 0.00 0.00 2.40
77 78 3.889815 CCCATAGAATGCCAGAACAAGA 58.110 45.455 0.00 0.00 0.00 3.02
78 79 2.360165 GCCCATAGAATGCCAGAACAAG 59.640 50.000 0.00 0.00 0.00 3.16
79 80 2.025037 AGCCCATAGAATGCCAGAACAA 60.025 45.455 0.00 0.00 0.00 2.83
80 81 1.565759 AGCCCATAGAATGCCAGAACA 59.434 47.619 0.00 0.00 0.00 3.18
81 82 1.952296 CAGCCCATAGAATGCCAGAAC 59.048 52.381 0.00 0.00 0.00 3.01
82 83 1.133699 CCAGCCCATAGAATGCCAGAA 60.134 52.381 0.00 0.00 0.00 3.02
83 84 0.475475 CCAGCCCATAGAATGCCAGA 59.525 55.000 0.00 0.00 0.00 3.86
84 85 0.475475 TCCAGCCCATAGAATGCCAG 59.525 55.000 0.00 0.00 0.00 4.85
85 86 0.183492 GTCCAGCCCATAGAATGCCA 59.817 55.000 0.00 0.00 0.00 4.92
86 87 0.886490 CGTCCAGCCCATAGAATGCC 60.886 60.000 0.00 0.00 0.00 4.40
87 88 1.510480 GCGTCCAGCCCATAGAATGC 61.510 60.000 0.00 0.00 40.81 3.56
88 89 2.621763 GCGTCCAGCCCATAGAATG 58.378 57.895 0.00 0.00 40.81 2.67
99 100 1.302033 AAGCAAGGTGAGCGTCCAG 60.302 57.895 0.00 0.00 37.01 3.86
100 101 1.597854 CAAGCAAGGTGAGCGTCCA 60.598 57.895 0.00 0.00 37.01 4.02
101 102 2.328099 CCAAGCAAGGTGAGCGTCC 61.328 63.158 0.00 0.00 37.01 4.79
102 103 2.328099 CCCAAGCAAGGTGAGCGTC 61.328 63.158 0.00 0.00 37.01 5.19
103 104 2.129555 ATCCCAAGCAAGGTGAGCGT 62.130 55.000 0.00 0.00 37.01 5.07
104 105 1.377725 ATCCCAAGCAAGGTGAGCG 60.378 57.895 0.00 0.00 37.01 5.03
105 106 0.610232 ACATCCCAAGCAAGGTGAGC 60.610 55.000 0.00 0.00 0.00 4.26
106 107 1.815003 GAACATCCCAAGCAAGGTGAG 59.185 52.381 0.00 0.00 0.00 3.51
107 108 1.547675 GGAACATCCCAAGCAAGGTGA 60.548 52.381 0.00 0.00 0.00 4.02
108 109 0.890683 GGAACATCCCAAGCAAGGTG 59.109 55.000 0.00 0.00 0.00 4.00
109 110 0.609131 CGGAACATCCCAAGCAAGGT 60.609 55.000 0.00 0.00 31.13 3.50
110 111 1.315257 CCGGAACATCCCAAGCAAGG 61.315 60.000 0.00 0.00 31.13 3.61
111 112 1.315257 CCCGGAACATCCCAAGCAAG 61.315 60.000 0.73 0.00 31.13 4.01
112 113 1.304052 CCCGGAACATCCCAAGCAA 60.304 57.895 0.73 0.00 31.13 3.91
113 114 2.354729 CCCGGAACATCCCAAGCA 59.645 61.111 0.73 0.00 31.13 3.91
114 115 2.440247 CCCCGGAACATCCCAAGC 60.440 66.667 0.73 0.00 31.13 4.01
115 116 1.645402 ATCCCCCGGAACATCCCAAG 61.645 60.000 0.73 0.00 34.34 3.61
116 117 0.327673 TATCCCCCGGAACATCCCAA 60.328 55.000 0.73 0.00 34.34 4.12
117 118 1.057851 GTATCCCCCGGAACATCCCA 61.058 60.000 0.73 0.00 34.34 4.37
118 119 1.759236 GTATCCCCCGGAACATCCC 59.241 63.158 0.73 0.00 34.34 3.85
119 120 1.759236 GGTATCCCCCGGAACATCC 59.241 63.158 0.73 0.00 34.34 3.51
120 121 1.759236 GGGTATCCCCCGGAACATC 59.241 63.158 0.73 0.00 45.80 3.06
121 122 3.997196 GGGTATCCCCCGGAACAT 58.003 61.111 0.73 0.00 45.80 2.71
148 149 1.757118 TCATTGTCCGATCTGGGAGAC 59.243 52.381 4.16 0.00 36.58 3.36
149 150 1.757118 GTCATTGTCCGATCTGGGAGA 59.243 52.381 4.16 0.00 36.58 3.71
150 151 1.536922 CGTCATTGTCCGATCTGGGAG 60.537 57.143 4.16 0.00 36.58 4.30
151 152 0.459899 CGTCATTGTCCGATCTGGGA 59.540 55.000 4.16 0.00 38.76 4.37
152 153 0.530650 CCGTCATTGTCCGATCTGGG 60.531 60.000 4.16 0.00 38.76 4.45
153 154 0.175760 ACCGTCATTGTCCGATCTGG 59.824 55.000 0.00 0.00 40.09 3.86
154 155 1.280982 CACCGTCATTGTCCGATCTG 58.719 55.000 0.00 0.00 0.00 2.90
155 156 0.895530 ACACCGTCATTGTCCGATCT 59.104 50.000 0.00 0.00 0.00 2.75
156 157 2.572191 TACACCGTCATTGTCCGATC 57.428 50.000 0.00 0.00 0.00 3.69
157 158 3.536956 AATACACCGTCATTGTCCGAT 57.463 42.857 0.00 0.00 0.00 4.18
158 159 3.322211 AAATACACCGTCATTGTCCGA 57.678 42.857 0.00 0.00 0.00 4.55
159 160 4.032445 CACTAAATACACCGTCATTGTCCG 59.968 45.833 0.00 0.00 0.00 4.79
160 161 5.172934 TCACTAAATACACCGTCATTGTCC 58.827 41.667 0.00 0.00 0.00 4.02
161 162 6.367969 ACTTCACTAAATACACCGTCATTGTC 59.632 38.462 0.00 0.00 0.00 3.18
162 163 6.228258 ACTTCACTAAATACACCGTCATTGT 58.772 36.000 0.00 0.00 0.00 2.71
163 164 6.721571 ACTTCACTAAATACACCGTCATTG 57.278 37.500 0.00 0.00 0.00 2.82
164 165 7.159372 AGAACTTCACTAAATACACCGTCATT 58.841 34.615 0.00 0.00 0.00 2.57
165 166 6.698380 AGAACTTCACTAAATACACCGTCAT 58.302 36.000 0.00 0.00 0.00 3.06
166 167 6.092955 AGAACTTCACTAAATACACCGTCA 57.907 37.500 0.00 0.00 0.00 4.35
167 168 5.575995 GGAGAACTTCACTAAATACACCGTC 59.424 44.000 0.00 0.00 0.00 4.79
168 169 5.476614 GGAGAACTTCACTAAATACACCGT 58.523 41.667 0.00 0.00 0.00 4.83
169 170 4.868734 GGGAGAACTTCACTAAATACACCG 59.131 45.833 0.00 0.00 0.00 4.94
170 171 6.051179 AGGGAGAACTTCACTAAATACACC 57.949 41.667 0.00 0.00 37.95 4.16
171 172 6.107343 GGAGGGAGAACTTCACTAAATACAC 58.893 44.000 0.00 0.00 40.54 2.90
172 173 5.189145 GGGAGGGAGAACTTCACTAAATACA 59.811 44.000 0.00 0.00 40.54 2.29
173 174 5.672503 GGGAGGGAGAACTTCACTAAATAC 58.327 45.833 0.00 0.00 40.54 1.89
174 175 4.404715 CGGGAGGGAGAACTTCACTAAATA 59.595 45.833 0.00 0.00 40.54 1.40
175 176 3.197983 CGGGAGGGAGAACTTCACTAAAT 59.802 47.826 0.00 0.00 40.54 1.40
176 177 2.565834 CGGGAGGGAGAACTTCACTAAA 59.434 50.000 0.00 0.00 40.54 1.85
177 178 2.176889 CGGGAGGGAGAACTTCACTAA 58.823 52.381 0.00 0.00 40.54 2.24
178 179 1.848652 CGGGAGGGAGAACTTCACTA 58.151 55.000 0.00 0.00 40.54 2.74
179 180 2.672414 CGGGAGGGAGAACTTCACT 58.328 57.895 0.00 0.00 44.17 3.41
192 193 2.260088 TAAAACGATGCCCCCGGGAG 62.260 60.000 26.32 11.12 37.50 4.30
193 194 1.849975 TTAAAACGATGCCCCCGGGA 61.850 55.000 26.32 0.92 37.50 5.14
194 195 0.966370 TTTAAAACGATGCCCCCGGG 60.966 55.000 15.80 15.80 38.57 5.73
195 196 0.889306 TTTTAAAACGATGCCCCCGG 59.111 50.000 0.00 0.00 0.00 5.73
196 197 2.951457 ATTTTAAAACGATGCCCCCG 57.049 45.000 1.97 0.00 0.00 5.73
197 198 4.158949 ACAGTATTTTAAAACGATGCCCCC 59.841 41.667 1.97 0.00 0.00 5.40
198 199 5.319140 ACAGTATTTTAAAACGATGCCCC 57.681 39.130 1.97 0.00 0.00 5.80
199 200 8.024865 AGTTAACAGTATTTTAAAACGATGCCC 58.975 33.333 8.61 0.00 0.00 5.36
200 201 8.846607 CAGTTAACAGTATTTTAAAACGATGCC 58.153 33.333 8.61 0.00 0.00 4.40
201 202 8.846607 CCAGTTAACAGTATTTTAAAACGATGC 58.153 33.333 8.61 0.00 0.00 3.91
202 203 9.337091 CCCAGTTAACAGTATTTTAAAACGATG 57.663 33.333 8.61 4.87 0.00 3.84
203 204 8.517056 CCCCAGTTAACAGTATTTTAAAACGAT 58.483 33.333 8.61 0.00 0.00 3.73
204 205 7.501892 ACCCCAGTTAACAGTATTTTAAAACGA 59.498 33.333 8.61 0.00 0.00 3.85
205 206 7.592164 CACCCCAGTTAACAGTATTTTAAAACG 59.408 37.037 8.61 0.00 0.00 3.60
206 207 7.868922 CCACCCCAGTTAACAGTATTTTAAAAC 59.131 37.037 8.61 0.00 0.00 2.43
207 208 7.471679 GCCACCCCAGTTAACAGTATTTTAAAA 60.472 37.037 8.61 2.51 0.00 1.52
208 209 6.015265 GCCACCCCAGTTAACAGTATTTTAAA 60.015 38.462 8.61 0.00 0.00 1.52
209 210 5.477637 GCCACCCCAGTTAACAGTATTTTAA 59.522 40.000 8.61 0.00 0.00 1.52
210 211 5.011586 GCCACCCCAGTTAACAGTATTTTA 58.988 41.667 8.61 0.00 0.00 1.52
211 212 3.830178 GCCACCCCAGTTAACAGTATTTT 59.170 43.478 8.61 0.00 0.00 1.82
212 213 3.427573 GCCACCCCAGTTAACAGTATTT 58.572 45.455 8.61 0.00 0.00 1.40
213 214 2.617021 CGCCACCCCAGTTAACAGTATT 60.617 50.000 8.61 0.00 0.00 1.89
214 215 1.065709 CGCCACCCCAGTTAACAGTAT 60.066 52.381 8.61 0.00 0.00 2.12
215 216 0.322322 CGCCACCCCAGTTAACAGTA 59.678 55.000 8.61 0.00 0.00 2.74
216 217 1.072505 CGCCACCCCAGTTAACAGT 59.927 57.895 8.61 0.00 0.00 3.55
217 218 1.674322 CCGCCACCCCAGTTAACAG 60.674 63.158 8.61 0.00 0.00 3.16
218 219 2.119484 CTCCGCCACCCCAGTTAACA 62.119 60.000 8.61 0.00 0.00 2.41
219 220 1.376812 CTCCGCCACCCCAGTTAAC 60.377 63.158 0.00 0.00 0.00 2.01
220 221 3.074281 CTCCGCCACCCCAGTTAA 58.926 61.111 0.00 0.00 0.00 2.01
221 222 3.712907 GCTCCGCCACCCCAGTTA 61.713 66.667 0.00 0.00 0.00 2.24
226 227 4.864334 CTCATGCTCCGCCACCCC 62.864 72.222 0.00 0.00 0.00 4.95
227 228 4.864334 CCTCATGCTCCGCCACCC 62.864 72.222 0.00 0.00 0.00 4.61
228 229 3.628646 AACCTCATGCTCCGCCACC 62.629 63.158 0.00 0.00 0.00 4.61
229 230 2.045926 AACCTCATGCTCCGCCAC 60.046 61.111 0.00 0.00 0.00 5.01
230 231 2.046023 CAACCTCATGCTCCGCCA 60.046 61.111 0.00 0.00 0.00 5.69
231 232 2.045926 ACAACCTCATGCTCCGCC 60.046 61.111 0.00 0.00 0.00 6.13
232 233 3.044059 GCACAACCTCATGCTCCGC 62.044 63.158 0.00 0.00 38.84 5.54
233 234 2.743752 CGCACAACCTCATGCTCCG 61.744 63.158 0.00 0.00 39.79 4.63
234 235 2.401766 CCGCACAACCTCATGCTCC 61.402 63.158 0.00 0.00 39.79 4.70
235 236 1.672356 ACCGCACAACCTCATGCTC 60.672 57.895 0.00 0.00 39.79 4.26
236 237 1.968017 CACCGCACAACCTCATGCT 60.968 57.895 0.00 0.00 39.79 3.79
237 238 2.260869 ACACCGCACAACCTCATGC 61.261 57.895 0.00 0.00 38.52 4.06
238 239 1.575922 CACACCGCACAACCTCATG 59.424 57.895 0.00 0.00 0.00 3.07
239 240 1.600636 CCACACCGCACAACCTCAT 60.601 57.895 0.00 0.00 0.00 2.90
240 241 2.203139 CCACACCGCACAACCTCA 60.203 61.111 0.00 0.00 0.00 3.86
241 242 3.660111 GCCACACCGCACAACCTC 61.660 66.667 0.00 0.00 0.00 3.85
242 243 3.790416 ATGCCACACCGCACAACCT 62.790 57.895 0.00 0.00 42.70 3.50
243 244 3.267597 GATGCCACACCGCACAACC 62.268 63.158 0.00 0.00 42.70 3.77
244 245 2.187599 GAGATGCCACACCGCACAAC 62.188 60.000 0.00 0.00 42.70 3.32
245 246 1.965930 GAGATGCCACACCGCACAA 60.966 57.895 0.00 0.00 42.70 3.33
246 247 2.358615 GAGATGCCACACCGCACA 60.359 61.111 0.00 0.00 42.70 4.57
247 248 1.672356 AAGAGATGCCACACCGCAC 60.672 57.895 0.00 0.00 42.70 5.34
248 249 1.672030 CAAGAGATGCCACACCGCA 60.672 57.895 0.00 0.00 44.35 5.69
249 250 3.181367 CAAGAGATGCCACACCGC 58.819 61.111 0.00 0.00 0.00 5.68
258 259 0.575859 CATCGCTGACGCAAGAGATG 59.424 55.000 14.29 14.29 44.45 2.90
259 260 0.529337 CCATCGCTGACGCAAGAGAT 60.529 55.000 0.00 0.00 37.20 2.75
260 261 1.153765 CCATCGCTGACGCAAGAGA 60.154 57.895 0.00 0.00 43.62 3.10
261 262 2.806856 GCCATCGCTGACGCAAGAG 61.807 63.158 0.00 0.00 43.62 2.85
262 263 2.815211 GCCATCGCTGACGCAAGA 60.815 61.111 0.00 0.00 43.62 3.02
267 268 2.971428 AATACCCGCCATCGCTGACG 62.971 60.000 0.00 0.00 42.01 4.35
268 269 1.227556 AATACCCGCCATCGCTGAC 60.228 57.895 0.00 0.00 0.00 3.51
269 270 1.227527 CAATACCCGCCATCGCTGA 60.228 57.895 0.00 0.00 0.00 4.26
270 271 2.253758 CCAATACCCGCCATCGCTG 61.254 63.158 0.00 0.00 0.00 5.18
271 272 2.111043 CCAATACCCGCCATCGCT 59.889 61.111 0.00 0.00 0.00 4.93
272 273 3.660111 GCCAATACCCGCCATCGC 61.660 66.667 0.00 0.00 0.00 4.58
273 274 3.345808 CGCCAATACCCGCCATCG 61.346 66.667 0.00 0.00 0.00 3.84
274 275 2.978010 CCGCCAATACCCGCCATC 60.978 66.667 0.00 0.00 0.00 3.51
282 283 1.841663 CTATGCCACGCCGCCAATAC 61.842 60.000 0.00 0.00 0.00 1.89
283 284 1.596752 CTATGCCACGCCGCCAATA 60.597 57.895 0.00 0.00 0.00 1.90
284 285 2.901840 CTATGCCACGCCGCCAAT 60.902 61.111 0.00 0.00 0.00 3.16
292 293 4.910585 GGACCCCGCTATGCCACG 62.911 72.222 0.00 0.00 0.00 4.94
293 294 3.480133 AGGACCCCGCTATGCCAC 61.480 66.667 0.00 0.00 0.00 5.01
294 295 3.479203 CAGGACCCCGCTATGCCA 61.479 66.667 0.00 0.00 0.00 4.92
295 296 4.256180 CCAGGACCCCGCTATGCC 62.256 72.222 0.00 0.00 0.00 4.40
296 297 4.937431 GCCAGGACCCCGCTATGC 62.937 72.222 0.00 0.00 0.00 3.14
297 298 4.609018 CGCCAGGACCCCGCTATG 62.609 72.222 0.00 0.00 0.00 2.23
298 299 4.853142 TCGCCAGGACCCCGCTAT 62.853 66.667 0.00 0.00 0.00 2.97
299 300 4.853142 ATCGCCAGGACCCCGCTA 62.853 66.667 0.00 0.00 0.00 4.26
303 304 3.171388 ATCCATCGCCAGGACCCC 61.171 66.667 0.00 0.00 38.13 4.95
304 305 2.111878 CATCCATCGCCAGGACCC 59.888 66.667 0.00 0.00 38.13 4.46
305 306 2.592861 GCATCCATCGCCAGGACC 60.593 66.667 0.00 0.00 38.13 4.46
306 307 1.890979 CAGCATCCATCGCCAGGAC 60.891 63.158 0.00 0.00 38.13 3.85
307 308 2.507452 CAGCATCCATCGCCAGGA 59.493 61.111 0.00 0.00 39.97 3.86
308 309 2.593725 CCAGCATCCATCGCCAGG 60.594 66.667 0.00 0.00 0.00 4.45
309 310 3.285215 GCCAGCATCCATCGCCAG 61.285 66.667 0.00 0.00 0.00 4.85
310 311 4.112433 TGCCAGCATCCATCGCCA 62.112 61.111 0.00 0.00 0.00 5.69
311 312 3.589881 GTGCCAGCATCCATCGCC 61.590 66.667 0.00 0.00 0.00 5.54
312 313 2.515523 AGTGCCAGCATCCATCGC 60.516 61.111 0.00 0.00 0.00 4.58
313 314 1.434622 GACAGTGCCAGCATCCATCG 61.435 60.000 0.00 0.00 0.00 3.84
314 315 0.107312 AGACAGTGCCAGCATCCATC 60.107 55.000 0.00 0.00 0.00 3.51
315 316 1.140452 CTAGACAGTGCCAGCATCCAT 59.860 52.381 0.00 0.00 0.00 3.41
316 317 0.538584 CTAGACAGTGCCAGCATCCA 59.461 55.000 0.00 0.00 0.00 3.41
317 318 0.813210 GCTAGACAGTGCCAGCATCC 60.813 60.000 0.00 0.00 34.13 3.51
318 319 1.150567 CGCTAGACAGTGCCAGCATC 61.151 60.000 10.68 0.00 33.55 3.91
319 320 1.153489 CGCTAGACAGTGCCAGCAT 60.153 57.895 10.68 0.00 33.55 3.79
320 321 2.262603 CGCTAGACAGTGCCAGCA 59.737 61.111 10.68 0.00 33.55 4.41
321 322 1.807573 GACGCTAGACAGTGCCAGC 60.808 63.158 0.00 0.00 35.58 4.85
322 323 1.515088 CGACGCTAGACAGTGCCAG 60.515 63.158 0.00 0.00 35.58 4.85
323 324 1.923227 CTCGACGCTAGACAGTGCCA 61.923 60.000 0.00 0.00 35.58 4.92
324 325 1.226435 CTCGACGCTAGACAGTGCC 60.226 63.158 0.00 0.00 35.58 5.01
325 326 1.226435 CCTCGACGCTAGACAGTGC 60.226 63.158 0.00 0.00 35.58 4.40
326 327 1.018148 ATCCTCGACGCTAGACAGTG 58.982 55.000 0.00 0.00 38.31 3.66
327 328 2.158928 ACTATCCTCGACGCTAGACAGT 60.159 50.000 0.00 0.00 0.00 3.55
328 329 2.485903 ACTATCCTCGACGCTAGACAG 58.514 52.381 0.00 0.00 0.00 3.51
329 330 2.616634 ACTATCCTCGACGCTAGACA 57.383 50.000 0.00 0.00 0.00 3.41
330 331 3.432933 CCTAACTATCCTCGACGCTAGAC 59.567 52.174 0.00 0.00 0.00 2.59
331 332 3.323115 TCCTAACTATCCTCGACGCTAGA 59.677 47.826 0.00 0.00 0.00 2.43
332 333 3.432933 GTCCTAACTATCCTCGACGCTAG 59.567 52.174 0.00 0.00 0.00 3.42
333 334 3.070734 AGTCCTAACTATCCTCGACGCTA 59.929 47.826 0.00 0.00 32.59 4.26
334 335 2.158784 AGTCCTAACTATCCTCGACGCT 60.159 50.000 0.00 0.00 32.59 5.07
335 336 2.031857 CAGTCCTAACTATCCTCGACGC 60.032 54.545 0.00 0.00 33.25 5.19
336 337 2.548904 CCAGTCCTAACTATCCTCGACG 59.451 54.545 0.00 0.00 33.25 5.12
337 338 2.293955 GCCAGTCCTAACTATCCTCGAC 59.706 54.545 0.00 0.00 33.25 4.20
338 339 2.092049 TGCCAGTCCTAACTATCCTCGA 60.092 50.000 0.00 0.00 33.25 4.04
339 340 2.307768 TGCCAGTCCTAACTATCCTCG 58.692 52.381 0.00 0.00 33.25 4.63
340 341 3.070302 CCTTGCCAGTCCTAACTATCCTC 59.930 52.174 0.00 0.00 33.25 3.71
341 342 3.041946 CCTTGCCAGTCCTAACTATCCT 58.958 50.000 0.00 0.00 33.25 3.24
342 343 2.485657 GCCTTGCCAGTCCTAACTATCC 60.486 54.545 0.00 0.00 33.25 2.59
343 344 2.839975 GCCTTGCCAGTCCTAACTATC 58.160 52.381 0.00 0.00 33.25 2.08
393 394 2.631428 CGCCGCCATATTCCGTTG 59.369 61.111 0.00 0.00 0.00 4.10
394 395 2.590575 CCGCCGCCATATTCCGTT 60.591 61.111 0.00 0.00 0.00 4.44
400 401 4.329545 AATCCGCCGCCGCCATAT 62.330 61.111 0.00 0.00 0.00 1.78
407 408 2.356433 GCTCTAGAATCCGCCGCC 60.356 66.667 0.00 0.00 0.00 6.13
409 410 1.658717 CACGCTCTAGAATCCGCCG 60.659 63.158 0.00 0.00 0.00 6.46
411 412 2.296480 CGCACGCTCTAGAATCCGC 61.296 63.158 0.00 0.00 0.00 5.54
429 430 2.802667 CTCAGCGCACACCGTATGC 61.803 63.158 11.47 0.00 39.71 3.14
443 444 0.958091 CCGATCTAGCAGACCCTCAG 59.042 60.000 0.00 0.00 0.00 3.35
447 448 0.105039 CCAACCGATCTAGCAGACCC 59.895 60.000 0.00 0.00 0.00 4.46
502 503 3.804786 TGCATGCCATCTAATTTGGTG 57.195 42.857 16.68 0.00 36.57 4.17
547 548 4.342665 CCTCAATCCCTAGACCTACAACTC 59.657 50.000 0.00 0.00 0.00 3.01
559 560 1.048724 CCTGGCGACCTCAATCCCTA 61.049 60.000 0.00 0.00 0.00 3.53
562 563 0.462759 CTTCCTGGCGACCTCAATCC 60.463 60.000 0.00 0.00 0.00 3.01
567 568 2.266055 CACCTTCCTGGCGACCTC 59.734 66.667 0.00 0.00 40.22 3.85
611 612 8.450578 AATTATTGTTCAACAGAGTCTGACAA 57.549 30.769 26.86 23.37 35.18 3.18
639 640 5.984233 TCGATGCATACAACCATCTTTAC 57.016 39.130 0.00 0.00 36.55 2.01
648 649 3.925688 ACGTCAATCGATGCATACAAC 57.074 42.857 0.00 0.00 42.86 3.32
654 655 1.536072 GCCTCTACGTCAATCGATGCA 60.536 52.381 0.00 0.00 42.86 3.96
669 670 2.447959 GGATTACCCCGGGCCTCT 60.448 66.667 17.73 0.00 0.00 3.69
702 703 1.811176 GCCCTTGCACTGCATGTTTTT 60.811 47.619 4.10 0.00 38.76 1.94
703 704 0.249996 GCCCTTGCACTGCATGTTTT 60.250 50.000 4.10 0.00 38.76 2.43
704 705 1.368579 GCCCTTGCACTGCATGTTT 59.631 52.632 4.10 0.00 38.76 2.83
716 717 4.336713 GGAGTAAATCTTAGCTTGCCCTTG 59.663 45.833 0.00 0.00 0.00 3.61
750 751 9.330063 TGGCATCTCTACAAAGACTTATATTTG 57.670 33.333 0.00 0.00 41.79 2.32
758 759 5.163364 CCATAGTGGCATCTCTACAAAGACT 60.163 44.000 0.00 0.00 0.00 3.24
783 784 7.013942 TGGTATCTATATACATCCGTATGTGGC 59.986 40.741 3.56 0.00 45.99 5.01
803 804 7.444629 TTCGTATGTGGTCTATAGTGGTATC 57.555 40.000 0.00 0.00 0.00 2.24
805 806 6.774170 ACATTCGTATGTGGTCTATAGTGGTA 59.226 38.462 6.89 0.00 43.29 3.25
806 807 5.597182 ACATTCGTATGTGGTCTATAGTGGT 59.403 40.000 6.89 0.00 43.29 4.16
807 808 6.085555 ACATTCGTATGTGGTCTATAGTGG 57.914 41.667 6.89 0.00 43.29 4.00
812 813 9.696572 ACCTATATACATTCGTATGTGGTCTAT 57.303 33.333 16.91 10.63 44.56 1.98
814 815 7.122353 GGACCTATATACATTCGTATGTGGTCT 59.878 40.741 26.28 11.39 44.56 3.85
815 816 7.094075 TGGACCTATATACATTCGTATGTGGTC 60.094 40.741 22.65 22.65 44.56 4.02
818 819 9.952188 CTATGGACCTATATACATTCGTATGTG 57.048 37.037 16.91 2.64 44.56 3.21
820 821 9.952188 CACTATGGACCTATATACATTCGTATG 57.048 37.037 0.00 0.00 38.79 2.39
876 877 9.892444 TCATTTACTTATCTAATACTCCCTCCA 57.108 33.333 0.00 0.00 0.00 3.86
891 892 9.180678 CGTGCTTGAAAGTTTTCATTTACTTAT 57.819 29.630 8.02 0.00 45.65 1.73
892 893 8.399425 TCGTGCTTGAAAGTTTTCATTTACTTA 58.601 29.630 8.02 0.00 45.65 2.24
893 894 7.254852 TCGTGCTTGAAAGTTTTCATTTACTT 58.745 30.769 8.02 0.00 45.65 2.24
894 895 6.791303 TCGTGCTTGAAAGTTTTCATTTACT 58.209 32.000 8.02 0.00 45.65 2.24
895 896 7.167468 ACATCGTGCTTGAAAGTTTTCATTTAC 59.833 33.333 8.02 6.78 45.65 2.01
896 897 7.167302 CACATCGTGCTTGAAAGTTTTCATTTA 59.833 33.333 8.02 0.00 45.65 1.40
897 898 6.019640 CACATCGTGCTTGAAAGTTTTCATTT 60.020 34.615 8.02 0.00 45.65 2.32
898 899 5.459762 CACATCGTGCTTGAAAGTTTTCATT 59.540 36.000 8.02 0.00 45.65 2.57
899 900 4.977963 CACATCGTGCTTGAAAGTTTTCAT 59.022 37.500 8.02 0.00 45.65 2.57
900 901 4.350346 CACATCGTGCTTGAAAGTTTTCA 58.650 39.130 3.28 3.28 44.78 2.69
901 902 3.730715 CCACATCGTGCTTGAAAGTTTTC 59.269 43.478 0.00 0.00 33.49 2.29
902 903 3.130340 ACCACATCGTGCTTGAAAGTTTT 59.870 39.130 0.00 0.00 31.34 2.43
903 904 2.687935 ACCACATCGTGCTTGAAAGTTT 59.312 40.909 0.00 0.00 31.34 2.66
904 905 2.297701 ACCACATCGTGCTTGAAAGTT 58.702 42.857 0.00 0.00 31.34 2.66
905 906 1.967319 ACCACATCGTGCTTGAAAGT 58.033 45.000 0.00 0.00 31.34 2.66
906 907 3.728864 GCATACCACATCGTGCTTGAAAG 60.729 47.826 0.00 0.00 34.85 2.62
907 908 2.161410 GCATACCACATCGTGCTTGAAA 59.839 45.455 0.00 0.00 34.85 2.69
908 909 1.737236 GCATACCACATCGTGCTTGAA 59.263 47.619 0.00 0.00 34.85 2.69
909 910 1.066215 AGCATACCACATCGTGCTTGA 60.066 47.619 0.00 0.00 44.92 3.02
910 911 1.372582 AGCATACCACATCGTGCTTG 58.627 50.000 0.00 0.00 44.92 4.01
911 912 2.979814 TAGCATACCACATCGTGCTT 57.020 45.000 3.91 0.00 44.92 3.91
913 914 5.862924 AATTATAGCATACCACATCGTGC 57.137 39.130 0.00 0.00 37.84 5.34
974 975 1.822371 CGGGATGTTAAACCAAAGGGG 59.178 52.381 0.00 0.00 44.81 4.79
975 976 1.822371 CCGGGATGTTAAACCAAAGGG 59.178 52.381 0.00 0.00 41.29 3.95
1022 1023 1.881498 GCACAGAGGAGCTTCTTTGCT 60.881 52.381 12.46 0.00 43.90 3.91
1093 1094 2.614057 CAAACTTCAGAACGACCAAGCT 59.386 45.455 0.00 0.00 0.00 3.74
1125 1126 2.744202 AGATACTGCGGCTTTCAGTTTG 59.256 45.455 0.00 0.00 41.61 2.93
1135 1136 4.622701 AATTCTGAAAAGATACTGCGGC 57.377 40.909 0.00 0.00 0.00 6.53
1184 1186 8.871125 TCTCCATCCTAACTTCCAAAGATATAC 58.129 37.037 0.00 0.00 0.00 1.47
1211 1213 3.654143 ACTGCATGCAGAGGCCCA 61.654 61.111 45.50 12.26 46.30 5.36
1280 1289 1.508632 GAGGAGAGGAGAGATCGACG 58.491 60.000 0.00 0.00 0.00 5.12
1294 1321 0.972883 GGATCGGATCTTGGGAGGAG 59.027 60.000 16.96 0.00 0.00 3.69
1562 1606 1.281899 GGAGTGTAGCATCTTGTCGC 58.718 55.000 0.00 0.00 0.00 5.19
1567 1611 3.638627 TCGATGATGGAGTGTAGCATCTT 59.361 43.478 0.00 0.00 38.46 2.40
1623 1679 3.236618 GAAGTCGCGGTGGTTGTGC 62.237 63.158 6.13 0.00 0.00 4.57
1624 1680 1.227999 ATGAAGTCGCGGTGGTTGTG 61.228 55.000 6.13 0.00 0.00 3.33
1625 1681 0.949105 GATGAAGTCGCGGTGGTTGT 60.949 55.000 6.13 0.00 0.00 3.32
1626 1682 1.635663 GGATGAAGTCGCGGTGGTTG 61.636 60.000 6.13 0.00 0.00 3.77
1627 1683 1.375523 GGATGAAGTCGCGGTGGTT 60.376 57.895 6.13 0.00 0.00 3.67
1661 1717 2.685829 TTATTGGCACGTGGCGCAG 61.686 57.895 33.18 1.82 46.16 5.18
1732 1788 4.473520 CGGCTGGGGACTCGCAAT 62.474 66.667 0.00 0.00 35.37 3.56
1770 1826 2.666098 TAAGGGCTTGACGGCTCCC 61.666 63.158 5.79 5.79 39.05 4.30
1806 1862 6.294955 GCAAATTCTCCTTGGACATTCTTTCT 60.295 38.462 0.00 0.00 0.00 2.52
1820 1876 3.499737 CGCCGCGCAAATTCTCCT 61.500 61.111 8.75 0.00 0.00 3.69
1925 1981 3.991051 CCGTCCAGGTCGCACTGT 61.991 66.667 0.00 0.00 36.75 3.55
1969 2025 2.356741 GGTACATGGCATAGGGTTGTGT 60.357 50.000 0.00 0.00 0.00 3.72
1997 2053 2.305927 CCATCCAACACTAGGACCTTGT 59.694 50.000 0.00 0.00 38.13 3.16
2039 2095 2.678836 CCTTCGTAGTCAGTCGTCATCT 59.321 50.000 0.00 0.00 0.00 2.90
2049 2105 1.373748 GCCGTTGCCTTCGTAGTCA 60.374 57.895 0.00 0.00 0.00 3.41
2066 2122 3.372676 CTGCTGCCGACATCAACGC 62.373 63.158 0.00 0.00 0.00 4.84
2069 2125 0.390340 GAGTCTGCTGCCGACATCAA 60.390 55.000 23.09 0.00 33.89 2.57
2131 2190 5.521735 GTGACTCCAAGATGTAGCTACATTG 59.478 44.000 33.98 28.63 46.20 2.82
2170 2229 3.918253 TTGCCAGGACGGATGCCAC 62.918 63.158 0.00 0.00 36.56 5.01
2187 2246 2.304751 AACGACACAAAGACGGTCTT 57.695 45.000 17.38 17.38 38.59 3.01
2209 2268 1.737816 GCGCTGGATGGATGCATTT 59.262 52.632 0.00 0.00 0.00 2.32
2274 2335 0.037303 CTCCACCCACTGCATCTTGT 59.963 55.000 0.00 0.00 0.00 3.16
2323 2384 1.528129 CAGGAGTTCCAAGGAGCAAC 58.472 55.000 5.74 0.00 38.89 4.17
2327 2388 0.035630 CTGGCAGGAGTTCCAAGGAG 60.036 60.000 6.61 0.00 38.89 3.69
2425 2487 4.728772 TGACAACCTTGGTTTCATCATCT 58.271 39.130 1.76 0.00 0.00 2.90
2430 2492 3.891366 CCTCTTGACAACCTTGGTTTCAT 59.109 43.478 1.76 0.00 0.00 2.57
2556 2618 5.922544 AGCAATCCTTTTTCATCTTGTTTCG 59.077 36.000 0.00 0.00 0.00 3.46
2712 2776 0.396835 ACCTAGTACTCGGGGAAGGC 60.397 60.000 17.18 0.00 0.00 4.35
2896 2961 8.643752 CCAATAAACGGTTTACAAATGTGATTC 58.356 33.333 15.03 0.00 0.00 2.52
2907 2972 7.136289 TGTCTCATTCCAATAAACGGTTTAC 57.864 36.000 15.03 2.22 0.00 2.01
2954 3019 0.884704 GTGGAAGGAGCGTTTGCAGA 60.885 55.000 0.00 0.00 46.23 4.26
3056 3123 8.459521 CATTTAGAAATGGCGTCAAAAATACA 57.540 30.769 0.00 0.00 41.54 2.29
3084 3151 8.938906 GCCATATTATTTGCCTTAATTGGATTG 58.061 33.333 0.00 0.00 0.00 2.67
3195 3263 2.227388 CGAACTCGGTGGTACTTGTACT 59.773 50.000 10.26 0.00 35.37 2.73
3204 3272 0.872388 GAAAATGCGAACTCGGTGGT 59.128 50.000 0.69 0.00 40.23 4.16
3264 3332 2.205022 TCAAGCTTTCCACCTCCATG 57.795 50.000 0.00 0.00 0.00 3.66
3269 3337 3.006217 GCATTTCTTCAAGCTTTCCACCT 59.994 43.478 0.00 0.00 0.00 4.00
3271 3339 2.982470 CGCATTTCTTCAAGCTTTCCAC 59.018 45.455 0.00 0.00 0.00 4.02
3330 3398 8.264347 ACCATTTTCAAAACTGACATAAAACCT 58.736 29.630 0.00 0.00 0.00 3.50
3459 3528 5.353394 ACGGCTAGGAATCATAGAAAACA 57.647 39.130 6.09 0.00 0.00 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.