Multiple sequence alignment - TraesCS7A01G561600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G561600 chr7A 100.000 4083 0 0 1 4083 732798335 732802417 0.000000e+00 7540.0
1 TraesCS7A01G561600 chr7A 84.581 1135 135 20 2158 3268 732864102 732862984 0.000000e+00 1090.0
2 TraesCS7A01G561600 chr7A 84.328 402 53 6 1616 2012 732864505 732864109 6.400000e-103 385.0
3 TraesCS7A01G561600 chr7A 88.854 314 20 8 2699 3012 732806766 732807064 4.980000e-99 372.0
4 TraesCS7A01G561600 chr7A 92.105 114 5 2 3158 3268 732932116 732932228 1.520000e-34 158.0
5 TraesCS7A01G561600 chr7B 90.509 2929 159 56 559 3413 750603378 750606261 0.000000e+00 3759.0
6 TraesCS7A01G561600 chr7B 93.432 1416 78 5 2669 4083 750430311 750428910 0.000000e+00 2085.0
7 TraesCS7A01G561600 chr7B 82.850 1207 148 37 1685 2855 750443887 750442704 0.000000e+00 1027.0
8 TraesCS7A01G561600 chr7B 90.446 628 42 11 2659 3283 750416020 750415408 0.000000e+00 811.0
9 TraesCS7A01G561600 chr7B 88.746 622 48 8 2821 3421 750442708 750442088 0.000000e+00 741.0
10 TraesCS7A01G561600 chr7B 91.814 452 27 5 1879 2325 750431018 750430572 4.480000e-174 621.0
11 TraesCS7A01G561600 chr7B 92.029 276 15 4 3152 3426 750211495 750211226 8.280000e-102 381.0
12 TraesCS7A01G561600 chr7B 74.663 667 52 48 2 563 750602689 750603343 1.940000e-43 187.0
13 TraesCS7A01G561600 chr7D 84.121 3703 315 131 9 3532 633807635 633804027 0.000000e+00 3328.0
14 TraesCS7A01G561600 chr7D 85.542 415 36 6 2874 3280 633674819 633674421 2.940000e-111 412.0
15 TraesCS7A01G561600 chr7D 88.889 207 23 0 2955 3161 633803713 633803507 5.240000e-64 255.0
16 TraesCS7A01G561600 chr7D 87.179 78 8 2 3760 3837 248613107 248613182 2.020000e-13 87.9
17 TraesCS7A01G561600 chr7D 83.871 93 10 4 3760 3850 633803893 633803804 2.620000e-12 84.2
18 TraesCS7A01G561600 chr3D 84.979 466 45 16 3086 3532 15609528 15609069 2.240000e-122 449.0
19 TraesCS7A01G561600 chr3D 85.870 92 10 3 3760 3851 130792321 130792409 1.210000e-15 95.3
20 TraesCS7A01G561600 chr3D 88.462 78 5 4 3760 3836 15608935 15608861 1.560000e-14 91.6
21 TraesCS7A01G561600 chr5D 88.462 78 7 2 3760 3837 434018850 434018925 4.350000e-15 93.5
22 TraesCS7A01G561600 chr2D 88.462 78 7 2 3760 3837 411145180 411145105 4.350000e-15 93.5
23 TraesCS7A01G561600 chr4D 87.179 78 8 2 3760 3837 14198390 14198315 2.020000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G561600 chr7A 732798335 732802417 4082 False 7540.0 7540 100.0000 1 4083 1 chr7A.!!$F1 4082
1 TraesCS7A01G561600 chr7A 732862984 732864505 1521 True 737.5 1090 84.4545 1616 3268 2 chr7A.!!$R1 1652
2 TraesCS7A01G561600 chr7B 750602689 750606261 3572 False 1973.0 3759 82.5860 2 3413 2 chr7B.!!$F1 3411
3 TraesCS7A01G561600 chr7B 750428910 750431018 2108 True 1353.0 2085 92.6230 1879 4083 2 chr7B.!!$R3 2204
4 TraesCS7A01G561600 chr7B 750442088 750443887 1799 True 884.0 1027 85.7980 1685 3421 2 chr7B.!!$R4 1736
5 TraesCS7A01G561600 chr7B 750415408 750416020 612 True 811.0 811 90.4460 2659 3283 1 chr7B.!!$R2 624
6 TraesCS7A01G561600 chr7D 633803507 633807635 4128 True 1222.4 3328 85.6270 9 3850 3 chr7D.!!$R2 3841
7 TraesCS7A01G561600 chr3D 15608861 15609528 667 True 270.3 449 86.7205 3086 3836 2 chr3D.!!$R1 750

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
32 33 0.179059 GTGCTTTGGTTTGGGTTGGG 60.179 55.0 0.00 0.00 0.00 4.12 F
1122 1338 0.026544 CCGAAGACGTACTCTCGCTC 59.973 60.0 0.00 0.00 37.88 5.03 F
1188 1404 0.033504 TGTCCGGTCTGCAGTTCTTC 59.966 55.0 14.67 2.45 0.00 2.87 F
1737 1961 0.039437 CTGCTTTGTGCTGCTCCTTG 60.039 55.0 0.00 0.00 43.37 3.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1329 1545 0.456221 AGCGGTACAGAACATCCGAG 59.544 55.0 6.63 0.0 44.86 4.63 R
2165 2409 0.884704 TTGGTGCAGCTCCTTTCGTC 60.885 55.0 18.08 0.0 0.00 4.20 R
2971 3299 1.378531 GATTGCTGCGGTAATGGTCA 58.621 50.0 14.04 0.0 0.00 4.02 R
3495 3874 0.041839 GTCAAGCACAACAGCAGACG 60.042 55.0 0.00 0.0 34.05 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 1.118838 TCCTTGTGCTTTGGTTTGGG 58.881 50.000 0.00 0.00 0.00 4.12
32 33 0.179059 GTGCTTTGGTTTGGGTTGGG 60.179 55.000 0.00 0.00 0.00 4.12
72 75 1.458588 GGCCGAATCTCCTCCCTCT 60.459 63.158 0.00 0.00 0.00 3.69
76 79 0.466555 CGAATCTCCTCCCTCTCGGT 60.467 60.000 0.00 0.00 0.00 4.69
101 104 4.513198 TTCCATGGTTTCGATTTGGTTC 57.487 40.909 12.58 0.00 0.00 3.62
129 163 2.685743 TCGAATCCCCCGCTTCCA 60.686 61.111 0.00 0.00 0.00 3.53
144 178 2.561478 TTCCACTTCCCGGAAGAAAG 57.439 50.000 30.28 19.02 41.71 2.62
145 179 1.724545 TCCACTTCCCGGAAGAAAGA 58.275 50.000 30.28 19.97 41.71 2.52
146 180 2.051692 TCCACTTCCCGGAAGAAAGAA 58.948 47.619 30.28 10.36 41.71 2.52
147 181 2.440253 TCCACTTCCCGGAAGAAAGAAA 59.560 45.455 30.28 9.13 41.71 2.52
165 205 6.572167 AAGAAATCTGGCTTCTTCTTCTTG 57.428 37.500 0.00 0.00 38.47 3.02
193 238 4.184079 CAGCTTTCCTGGAAAAAGATGG 57.816 45.455 21.39 10.67 43.13 3.51
218 263 2.935481 CCCTCCCCTGTTCCAGCA 60.935 66.667 0.00 0.00 0.00 4.41
219 264 2.538141 CCCTCCCCTGTTCCAGCAA 61.538 63.158 0.00 0.00 0.00 3.91
254 300 1.153597 GCAAGCAAAAGCCAAAGCGT 61.154 50.000 0.00 0.00 46.67 5.07
261 307 2.929398 CAAAAGCCAAAGCGTGTTTCTT 59.071 40.909 0.00 0.00 46.67 2.52
270 336 1.602377 AGCGTGTTTCTTTCTTTCCCG 59.398 47.619 0.00 0.00 0.00 5.14
325 391 3.160900 CGTACGCACGCAAATCCA 58.839 55.556 0.52 0.00 42.05 3.41
326 392 1.225637 CGTACGCACGCAAATCCAC 60.226 57.895 0.52 0.00 42.05 4.02
327 393 1.133869 GTACGCACGCAAATCCACC 59.866 57.895 0.00 0.00 0.00 4.61
328 394 2.036006 TACGCACGCAAATCCACCC 61.036 57.895 0.00 0.00 0.00 4.61
345 411 1.884464 CCATCCATCGCTGTCACCG 60.884 63.158 0.00 0.00 0.00 4.94
347 413 1.141881 ATCCATCGCTGTCACCGTC 59.858 57.895 0.00 0.00 0.00 4.79
349 415 2.573869 CATCGCTGTCACCGTCCT 59.426 61.111 0.00 0.00 0.00 3.85
351 417 1.679305 ATCGCTGTCACCGTCCTCT 60.679 57.895 0.00 0.00 0.00 3.69
352 418 1.251527 ATCGCTGTCACCGTCCTCTT 61.252 55.000 0.00 0.00 0.00 2.85
354 420 1.666011 GCTGTCACCGTCCTCTTCA 59.334 57.895 0.00 0.00 0.00 3.02
360 458 1.275291 TCACCGTCCTCTTCATCAACC 59.725 52.381 0.00 0.00 0.00 3.77
363 461 2.076863 CCGTCCTCTTCATCAACCAAC 58.923 52.381 0.00 0.00 0.00 3.77
391 489 4.756084 AAGATTGTTTTCCTCTTCTGCG 57.244 40.909 0.00 0.00 0.00 5.18
392 490 4.008074 AGATTGTTTTCCTCTTCTGCGA 57.992 40.909 0.00 0.00 0.00 5.10
393 491 4.389374 AGATTGTTTTCCTCTTCTGCGAA 58.611 39.130 0.00 0.00 0.00 4.70
395 493 2.218603 TGTTTTCCTCTTCTGCGAACC 58.781 47.619 0.00 0.00 0.00 3.62
399 500 1.376037 CCTCTTCTGCGAACCCCAC 60.376 63.158 0.00 0.00 0.00 4.61
458 559 8.336801 ACCAGTCAGATTACACCTTTTATTTC 57.663 34.615 0.00 0.00 0.00 2.17
461 562 7.957484 CAGTCAGATTACACCTTTTATTTCACG 59.043 37.037 0.00 0.00 0.00 4.35
463 564 8.665685 GTCAGATTACACCTTTTATTTCACGAT 58.334 33.333 0.00 0.00 0.00 3.73
468 569 6.894339 ACACCTTTTATTTCACGATTTCCT 57.106 33.333 0.00 0.00 0.00 3.36
469 570 6.909909 ACACCTTTTATTTCACGATTTCCTC 58.090 36.000 0.00 0.00 0.00 3.71
470 571 6.488683 ACACCTTTTATTTCACGATTTCCTCA 59.511 34.615 0.00 0.00 0.00 3.86
471 572 6.801862 CACCTTTTATTTCACGATTTCCTCAC 59.198 38.462 0.00 0.00 0.00 3.51
472 573 6.715264 ACCTTTTATTTCACGATTTCCTCACT 59.285 34.615 0.00 0.00 0.00 3.41
473 574 7.094762 ACCTTTTATTTCACGATTTCCTCACTC 60.095 37.037 0.00 0.00 0.00 3.51
474 575 7.094805 CCTTTTATTTCACGATTTCCTCACTCA 60.095 37.037 0.00 0.00 0.00 3.41
475 576 6.968131 TTATTTCACGATTTCCTCACTCAG 57.032 37.500 0.00 0.00 0.00 3.35
476 577 4.600692 TTTCACGATTTCCTCACTCAGA 57.399 40.909 0.00 0.00 0.00 3.27
477 578 4.808414 TTCACGATTTCCTCACTCAGAT 57.192 40.909 0.00 0.00 0.00 2.90
478 579 5.914898 TTCACGATTTCCTCACTCAGATA 57.085 39.130 0.00 0.00 0.00 1.98
543 667 4.729918 AAGGAAGCAGGCGGGCAG 62.730 66.667 3.78 0.00 35.83 4.85
598 763 2.742372 CCAACTTCTCCGGCCACG 60.742 66.667 2.24 0.00 40.55 4.94
655 828 9.987272 AATTCCCAATCTTTTTCTTTCTTACTG 57.013 29.630 0.00 0.00 0.00 2.74
699 872 2.285977 GTTGACCCTGACAAAGACGTT 58.714 47.619 0.00 0.00 0.00 3.99
700 873 3.118702 TGTTGACCCTGACAAAGACGTTA 60.119 43.478 0.00 0.00 0.00 3.18
701 874 3.380479 TGACCCTGACAAAGACGTTAG 57.620 47.619 0.00 0.00 0.00 2.34
703 876 2.298163 GACCCTGACAAAGACGTTAGGA 59.702 50.000 3.64 0.00 43.62 2.94
704 877 2.036862 ACCCTGACAAAGACGTTAGGAC 59.963 50.000 3.64 0.00 43.62 3.85
705 878 2.036733 CCCTGACAAAGACGTTAGGACA 59.963 50.000 3.64 0.00 43.62 4.02
706 879 3.057734 CCTGACAAAGACGTTAGGACAC 58.942 50.000 0.00 0.00 43.62 3.67
766 954 1.004277 GGCACACATGTTTCCTCCCTA 59.996 52.381 0.00 0.00 0.00 3.53
768 956 3.356290 GCACACATGTTTCCTCCCTATT 58.644 45.455 0.00 0.00 0.00 1.73
770 958 4.142381 GCACACATGTTTCCTCCCTATTTC 60.142 45.833 0.00 0.00 0.00 2.17
771 959 4.399303 CACACATGTTTCCTCCCTATTTCC 59.601 45.833 0.00 0.00 0.00 3.13
772 960 4.044065 ACACATGTTTCCTCCCTATTTCCA 59.956 41.667 0.00 0.00 0.00 3.53
773 961 4.641989 CACATGTTTCCTCCCTATTTCCAG 59.358 45.833 0.00 0.00 0.00 3.86
774 962 3.366052 TGTTTCCTCCCTATTTCCAGC 57.634 47.619 0.00 0.00 0.00 4.85
775 963 2.289565 GTTTCCTCCCTATTTCCAGCG 58.710 52.381 0.00 0.00 0.00 5.18
776 964 0.180406 TTCCTCCCTATTTCCAGCGC 59.820 55.000 0.00 0.00 0.00 5.92
777 965 0.691078 TCCTCCCTATTTCCAGCGCT 60.691 55.000 2.64 2.64 0.00 5.92
778 966 0.533755 CCTCCCTATTTCCAGCGCTG 60.534 60.000 30.52 30.52 0.00 5.18
779 967 1.153168 TCCCTATTTCCAGCGCTGC 60.153 57.895 31.96 0.00 0.00 5.25
820 1014 1.750778 CTTGATTTATGCCAACCGCCT 59.249 47.619 0.00 0.00 36.24 5.52
821 1015 1.102154 TGATTTATGCCAACCGCCTG 58.898 50.000 0.00 0.00 36.24 4.85
822 1016 1.102978 GATTTATGCCAACCGCCTGT 58.897 50.000 0.00 0.00 36.24 4.00
823 1017 1.065551 GATTTATGCCAACCGCCTGTC 59.934 52.381 0.00 0.00 36.24 3.51
844 1038 2.342648 GTGACAGGACCGACACCC 59.657 66.667 7.26 0.00 0.00 4.61
845 1039 2.123208 TGACAGGACCGACACCCA 60.123 61.111 0.00 0.00 0.00 4.51
860 1054 4.583871 GACACCCAAATCTCATTCTCTGT 58.416 43.478 0.00 0.00 0.00 3.41
868 1066 6.127703 CCAAATCTCATTCTCTGTCATTGCTT 60.128 38.462 0.00 0.00 0.00 3.91
918 1123 1.068121 CAGGGGAAGGAAGGACAAGT 58.932 55.000 0.00 0.00 0.00 3.16
939 1145 1.834263 AGATAACAGACACCAGCTCCC 59.166 52.381 0.00 0.00 0.00 4.30
1107 1323 3.636231 CACCACAGGCTCCCCGAA 61.636 66.667 0.00 0.00 35.76 4.30
1110 1326 2.266055 CACAGGCTCCCCGAAGAC 59.734 66.667 0.00 0.00 35.76 3.01
1113 1329 2.050350 CAGGCTCCCCGAAGACGTA 61.050 63.158 0.00 0.00 37.88 3.57
1114 1330 2.050934 AGGCTCCCCGAAGACGTAC 61.051 63.158 0.00 0.00 37.88 3.67
1122 1338 0.026544 CCGAAGACGTACTCTCGCTC 59.973 60.000 0.00 0.00 37.88 5.03
1125 1341 0.035247 AAGACGTACTCTCGCTCCCT 60.035 55.000 0.00 0.00 0.00 4.20
1130 1346 1.304962 TACTCTCGCTCCCTGCCAA 60.305 57.895 0.00 0.00 38.78 4.52
1145 1361 2.041153 CCAACAAACCAGAGGCCAC 58.959 57.895 5.01 0.00 0.00 5.01
1152 1368 3.644606 CCAGAGGCCACCACAGCT 61.645 66.667 5.01 0.00 0.00 4.24
1186 1402 1.668294 CTGTCCGGTCTGCAGTTCT 59.332 57.895 14.67 0.00 0.00 3.01
1188 1404 0.033504 TGTCCGGTCTGCAGTTCTTC 59.966 55.000 14.67 2.45 0.00 2.87
1206 1422 4.410400 CCACGGAACCTCCAGGCC 62.410 72.222 0.00 0.00 35.91 5.19
1210 1426 2.294078 CGGAACCTCCAGGCCTTCT 61.294 63.158 0.00 0.00 35.91 2.85
1218 1434 3.083997 CAGGCCTTCTACCCGGCT 61.084 66.667 0.00 0.00 45.57 5.52
1329 1545 2.456443 GGCCATCCCTTCCTCCTCC 61.456 68.421 0.00 0.00 0.00 4.30
1337 1553 0.397816 CCTTCCTCCTCCTCGGATGT 60.398 60.000 0.00 0.00 42.12 3.06
1353 1569 0.673644 ATGTTCTGTACCGCTGGCAC 60.674 55.000 0.00 0.00 0.00 5.01
1407 1623 2.923035 AGGTCCCAGACGGTGGTG 60.923 66.667 5.44 0.00 46.37 4.17
1518 1734 1.635817 CCCTCCCCATGTCCGACATT 61.636 60.000 11.49 0.00 36.53 2.71
1527 1743 2.363788 TGTCCGACATTGTCAGCTAC 57.636 50.000 16.61 8.70 32.09 3.58
1569 1785 2.886862 AGAATGTGGAGATGCTCTCG 57.113 50.000 6.97 0.00 44.28 4.04
1602 1818 0.348370 ATTGGGTCAGGGAGGAGGAT 59.652 55.000 0.00 0.00 0.00 3.24
1638 1854 5.708230 TGTTTTCCACACTTTCAGTAACACT 59.292 36.000 0.00 0.00 0.00 3.55
1663 1881 2.035704 TGGCTTTGGTATGTGCACTTTG 59.964 45.455 19.41 1.11 0.00 2.77
1675 1893 5.083533 TGTGCACTTTGTTTGGATTTCTT 57.916 34.783 19.41 0.00 0.00 2.52
1707 1930 8.262601 AGAATTTACTGAAACCTTGGGATTTT 57.737 30.769 0.00 0.00 0.00 1.82
1708 1931 8.150296 AGAATTTACTGAAACCTTGGGATTTTG 58.850 33.333 0.00 0.00 0.00 2.44
1715 1938 5.010617 TGAAACCTTGGGATTTTGAGCTTAC 59.989 40.000 0.00 0.00 0.00 2.34
1717 1940 5.514500 ACCTTGGGATTTTGAGCTTACTA 57.486 39.130 0.00 0.00 0.00 1.82
1718 1941 5.254115 ACCTTGGGATTTTGAGCTTACTAC 58.746 41.667 0.00 0.00 0.00 2.73
1728 1952 3.067106 TGAGCTTACTACTGCTTTGTGC 58.933 45.455 0.00 0.00 39.91 4.57
1733 1957 1.517242 ACTACTGCTTTGTGCTGCTC 58.483 50.000 0.00 0.00 43.25 4.26
1735 1959 0.397941 TACTGCTTTGTGCTGCTCCT 59.602 50.000 0.00 0.00 43.25 3.69
1736 1960 0.466922 ACTGCTTTGTGCTGCTCCTT 60.467 50.000 0.00 0.00 43.25 3.36
1737 1961 0.039437 CTGCTTTGTGCTGCTCCTTG 60.039 55.000 0.00 0.00 43.37 3.61
1749 1973 2.169352 CTGCTCCTTGTGTAGCTATGGT 59.831 50.000 0.00 0.00 39.53 3.55
1752 1976 3.525537 CTCCTTGTGTAGCTATGGTGTG 58.474 50.000 0.00 0.00 0.00 3.82
1765 1989 3.914426 ATGGTGTGATACTGGAGAACC 57.086 47.619 0.00 0.00 0.00 3.62
1848 2072 1.118965 TTGCTGTCCCGGACTCTCAA 61.119 55.000 18.54 14.99 33.15 3.02
1858 2082 3.995048 CCCGGACTCTCAAGTAAAAACTC 59.005 47.826 0.73 0.00 35.28 3.01
1885 2113 5.989777 GCTAACCTCACGTGAATGGTATTAT 59.010 40.000 24.90 14.50 31.82 1.28
1893 2121 6.535865 TCACGTGAATGGTATTATGTGGTTAC 59.464 38.462 17.62 0.00 32.41 2.50
1896 2124 6.018262 CGTGAATGGTATTATGTGGTTACTGG 60.018 42.308 0.00 0.00 0.00 4.00
1911 2139 9.238368 TGTGGTTACTGGAAATCCTATAAAAAG 57.762 33.333 0.44 0.00 36.82 2.27
1912 2140 9.457436 GTGGTTACTGGAAATCCTATAAAAAGA 57.543 33.333 0.44 0.00 36.82 2.52
2165 2409 1.013596 TGAAGAAACACAGTGTGGCG 58.986 50.000 26.40 2.73 37.94 5.69
2364 2624 3.006217 GGAGTTCTGCATTTTCAGCCTTT 59.994 43.478 0.00 0.00 34.19 3.11
2404 2664 8.956533 ATTCTCTAAGCTTTTTCAGTAGATCC 57.043 34.615 3.20 0.00 0.00 3.36
2431 2692 2.154567 AATGTGAGGCATGGCATCTT 57.845 45.000 22.64 0.00 40.21 2.40
2558 2830 6.934645 TGATAACAAAAGACCTGTTACAGAGG 59.065 38.462 14.66 1.08 40.94 3.69
2576 2848 1.202651 AGGGTGTACGAATGCCATAGC 60.203 52.381 0.00 0.00 40.48 2.97
2630 2903 5.680619 TGTGATTCACCAGTACTTCTGTTT 58.319 37.500 14.05 0.00 42.19 2.83
2648 2933 2.235898 GTTTCCCAAAATGGCATGCCTA 59.764 45.455 35.53 22.71 35.79 3.93
2655 2940 5.426504 CCAAAATGGCATGCCTAATGTTAA 58.573 37.500 35.53 14.91 38.65 2.01
2971 3299 1.678598 TTGTGTCGTCCCCTCACGTT 61.679 55.000 0.00 0.00 40.79 3.99
3058 3386 2.408835 GCCCGCCGTGATGATTTG 59.591 61.111 0.00 0.00 0.00 2.32
3064 3392 1.075542 GCCGTGATGATTTGTCGTCA 58.924 50.000 0.00 0.00 33.68 4.35
3095 3423 2.025981 TCTGCATAGGGTGTTTCTGCAT 60.026 45.455 0.00 0.00 41.55 3.96
3104 3432 3.119495 GGGTGTTTCTGCATGAATACCAC 60.119 47.826 21.44 15.92 40.79 4.16
3293 3652 0.664761 CTGTTGGTTCCAGTGCACAG 59.335 55.000 21.04 11.53 0.00 3.66
3296 3661 0.813610 TTGGTTCCAGTGCACAGACG 60.814 55.000 21.04 4.07 0.00 4.18
3297 3662 1.961277 GGTTCCAGTGCACAGACGG 60.961 63.158 21.04 13.52 0.00 4.79
3372 3751 2.628178 TGGTTACTGTCTCTCTGTGTGG 59.372 50.000 0.00 0.00 0.00 4.17
3414 3793 4.681483 GCAAATTTCTTGTGGCTACTGAAC 59.319 41.667 0.64 0.00 0.00 3.18
3449 3828 4.274214 CACATGACAAGAAGCTGTTTCTGA 59.726 41.667 7.55 0.00 45.41 3.27
3456 3835 3.944087 AGAAGCTGTTTCTGATGTACCC 58.056 45.455 5.94 0.00 44.46 3.69
3495 3874 9.436957 TCTTACTGTCAAAGGAAATATTCAGAC 57.563 33.333 4.16 0.00 0.00 3.51
3667 4046 3.674753 GCACAGGTAATTTTGATGCACAC 59.325 43.478 0.00 0.00 0.00 3.82
3731 4110 7.868922 CCATTGTTCATTGATTGTGAAAAGAGA 59.131 33.333 0.00 0.00 37.34 3.10
3732 4111 8.912658 CATTGTTCATTGATTGTGAAAAGAGAG 58.087 33.333 0.00 0.00 37.34 3.20
3733 4112 7.806409 TGTTCATTGATTGTGAAAAGAGAGA 57.194 32.000 0.00 0.00 37.34 3.10
3734 4113 8.224389 TGTTCATTGATTGTGAAAAGAGAGAA 57.776 30.769 0.00 0.00 37.34 2.87
3735 4114 8.685427 TGTTCATTGATTGTGAAAAGAGAGAAA 58.315 29.630 0.00 0.00 37.34 2.52
3736 4115 9.520204 GTTCATTGATTGTGAAAAGAGAGAAAA 57.480 29.630 0.00 0.00 37.34 2.29
3738 4117 9.520204 TCATTGATTGTGAAAAGAGAGAAAAAC 57.480 29.630 0.00 0.00 0.00 2.43
3739 4118 8.758715 CATTGATTGTGAAAAGAGAGAAAAACC 58.241 33.333 0.00 0.00 0.00 3.27
3740 4119 7.403312 TGATTGTGAAAAGAGAGAAAAACCA 57.597 32.000 0.00 0.00 0.00 3.67
3741 4120 7.483307 TGATTGTGAAAAGAGAGAAAAACCAG 58.517 34.615 0.00 0.00 0.00 4.00
3742 4121 5.835113 TGTGAAAAGAGAGAAAAACCAGG 57.165 39.130 0.00 0.00 0.00 4.45
3743 4122 5.261216 TGTGAAAAGAGAGAAAAACCAGGT 58.739 37.500 0.00 0.00 0.00 4.00
3744 4123 6.419791 TGTGAAAAGAGAGAAAAACCAGGTA 58.580 36.000 0.00 0.00 0.00 3.08
3745 4124 6.887545 TGTGAAAAGAGAGAAAAACCAGGTAA 59.112 34.615 0.00 0.00 0.00 2.85
3746 4125 7.559897 TGTGAAAAGAGAGAAAAACCAGGTAAT 59.440 33.333 0.00 0.00 0.00 1.89
3747 4126 9.063615 GTGAAAAGAGAGAAAAACCAGGTAATA 57.936 33.333 0.00 0.00 0.00 0.98
3748 4127 9.807921 TGAAAAGAGAGAAAAACCAGGTAATAT 57.192 29.630 0.00 0.00 0.00 1.28
3859 4266 0.807275 TCACTCATTGCATCGCCTCG 60.807 55.000 0.00 0.00 0.00 4.63
3860 4267 0.807275 CACTCATTGCATCGCCTCGA 60.807 55.000 0.00 0.00 41.13 4.04
3885 4292 7.946918 TGACGAAGCATTTTATTATTGTTCG 57.053 32.000 0.00 0.00 40.93 3.95
4047 4454 6.205464 AGTTGAATGTTGATCTTGTGGTACTG 59.795 38.462 0.00 0.00 0.00 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 1.522569 CGAGGAGATGGGACCCAAC 59.477 63.158 19.58 15.96 36.95 3.77
32 33 3.917760 CCGGCGAGGAGATGGGAC 61.918 72.222 9.30 0.00 45.00 4.46
72 75 1.604755 CGAAACCATGGAAAACACCGA 59.395 47.619 21.47 0.00 0.00 4.69
76 79 4.100189 ACCAAATCGAAACCATGGAAAACA 59.900 37.500 21.47 0.00 35.16 2.83
120 154 4.778143 CCGGGAAGTGGAAGCGGG 62.778 72.222 0.00 0.00 0.00 6.13
129 163 4.327680 CAGATTTCTTTCTTCCGGGAAGT 58.672 43.478 30.50 13.93 40.24 3.01
144 178 5.956068 ACAAGAAGAAGAAGCCAGATTTC 57.044 39.130 0.00 0.00 0.00 2.17
145 179 5.242615 GGAACAAGAAGAAGAAGCCAGATTT 59.757 40.000 0.00 0.00 0.00 2.17
146 180 4.764308 GGAACAAGAAGAAGAAGCCAGATT 59.236 41.667 0.00 0.00 0.00 2.40
147 181 4.042684 AGGAACAAGAAGAAGAAGCCAGAT 59.957 41.667 0.00 0.00 0.00 2.90
165 205 0.693049 TCCAGGAAAGCTGGAGGAAC 59.307 55.000 0.00 0.00 45.15 3.62
193 238 1.213182 GAACAGGGGAGGGGAAATCTC 59.787 57.143 0.00 0.00 0.00 2.75
218 263 2.123428 GCTCCGCCATTGCTGGATT 61.123 57.895 0.00 0.00 46.37 3.01
219 264 2.517875 GCTCCGCCATTGCTGGAT 60.518 61.111 0.00 0.00 46.37 3.41
247 293 3.796717 GGGAAAGAAAGAAACACGCTTTG 59.203 43.478 0.00 0.00 35.83 2.77
254 300 3.005367 GGATTGCGGGAAAGAAAGAAACA 59.995 43.478 0.00 0.00 0.00 2.83
261 307 0.034477 GGAGGGATTGCGGGAAAGAA 60.034 55.000 0.00 0.00 0.00 2.52
270 336 1.244019 ACGTTGCTTGGAGGGATTGC 61.244 55.000 0.00 0.00 0.00 3.56
324 390 1.091771 GTGACAGCGATGGATGGGTG 61.092 60.000 5.32 0.00 39.44 4.61
325 391 1.221840 GTGACAGCGATGGATGGGT 59.778 57.895 5.32 0.00 32.67 4.51
326 392 1.524621 GGTGACAGCGATGGATGGG 60.525 63.158 5.32 0.00 32.67 4.00
327 393 1.884464 CGGTGACAGCGATGGATGG 60.884 63.158 21.96 0.00 42.41 3.51
328 394 1.148157 GACGGTGACAGCGATGGATG 61.148 60.000 31.66 3.02 42.41 3.51
345 411 6.817765 TTTATGTTGGTTGATGAAGAGGAC 57.182 37.500 0.00 0.00 0.00 3.85
375 473 2.218603 GGTTCGCAGAAGAGGAAAACA 58.781 47.619 0.00 0.00 45.90 2.83
377 475 1.544759 GGGGTTCGCAGAAGAGGAAAA 60.545 52.381 0.00 0.00 45.90 2.29
380 478 1.535444 TGGGGTTCGCAGAAGAGGA 60.535 57.895 0.00 0.00 45.90 3.71
381 479 1.376037 GTGGGGTTCGCAGAAGAGG 60.376 63.158 0.00 0.00 45.90 3.69
384 482 1.376037 GAGGTGGGGTTCGCAGAAG 60.376 63.158 0.00 0.00 45.90 2.85
387 485 3.316573 GAGGAGGTGGGGTTCGCAG 62.317 68.421 0.00 0.00 0.00 5.18
389 487 4.097361 GGAGGAGGTGGGGTTCGC 62.097 72.222 0.00 0.00 0.00 4.70
390 488 1.918800 AAGGAGGAGGTGGGGTTCG 60.919 63.158 0.00 0.00 0.00 3.95
391 489 1.134438 ACAAGGAGGAGGTGGGGTTC 61.134 60.000 0.00 0.00 0.00 3.62
392 490 1.072930 ACAAGGAGGAGGTGGGGTT 60.073 57.895 0.00 0.00 0.00 4.11
393 491 1.847968 CACAAGGAGGAGGTGGGGT 60.848 63.158 0.00 0.00 0.00 4.95
395 493 3.081554 CCACAAGGAGGAGGTGGG 58.918 66.667 0.00 0.00 46.51 4.61
399 500 1.002868 CACAGCCACAAGGAGGAGG 60.003 63.158 0.00 0.00 36.89 4.30
437 538 8.025243 TCGTGAAATAAAAGGTGTAATCTGAC 57.975 34.615 0.00 0.00 0.00 3.51
458 559 4.800993 GTGTATCTGAGTGAGGAAATCGTG 59.199 45.833 0.00 0.00 0.00 4.35
461 562 5.105146 ACAGGTGTATCTGAGTGAGGAAATC 60.105 44.000 0.00 0.00 38.11 2.17
463 564 4.160329 ACAGGTGTATCTGAGTGAGGAAA 58.840 43.478 0.00 0.00 38.11 3.13
466 567 5.860941 ATTACAGGTGTATCTGAGTGAGG 57.139 43.478 0.00 0.00 38.11 3.86
468 569 6.605471 ACAATTACAGGTGTATCTGAGTGA 57.395 37.500 0.00 0.00 38.11 3.41
469 570 7.672983 AAACAATTACAGGTGTATCTGAGTG 57.327 36.000 0.00 0.00 38.11 3.51
470 571 8.691661 AAAAACAATTACAGGTGTATCTGAGT 57.308 30.769 0.00 0.00 38.11 3.41
471 572 9.003658 AGAAAAACAATTACAGGTGTATCTGAG 57.996 33.333 0.00 0.00 38.11 3.35
472 573 8.918202 AGAAAAACAATTACAGGTGTATCTGA 57.082 30.769 0.00 0.00 38.11 3.27
473 574 9.003658 AGAGAAAAACAATTACAGGTGTATCTG 57.996 33.333 0.00 0.00 40.40 2.90
474 575 9.574516 AAGAGAAAAACAATTACAGGTGTATCT 57.425 29.630 0.00 0.00 0.00 1.98
478 579 8.527810 TGAAAAGAGAAAAACAATTACAGGTGT 58.472 29.630 0.00 0.00 0.00 4.16
501 620 5.480642 TCCTGCAGCCAAATAATTTTGAA 57.519 34.783 8.66 0.00 44.11 2.69
618 791 4.388485 AGATTGGGAATTTGTTTGTTGCC 58.612 39.130 0.00 0.00 36.48 4.52
661 834 5.238432 GGTCAACACAAAGACACATGATGTA 59.762 40.000 0.00 0.00 43.56 2.29
664 837 3.569701 GGGTCAACACAAAGACACATGAT 59.430 43.478 0.00 0.00 38.06 2.45
665 838 2.948979 GGGTCAACACAAAGACACATGA 59.051 45.455 0.00 0.00 38.06 3.07
673 846 4.032703 CTTTGTCAGGGTCAACACAAAG 57.967 45.455 8.55 8.55 45.51 2.77
674 847 3.442273 GTCTTTGTCAGGGTCAACACAAA 59.558 43.478 0.00 0.00 36.60 2.83
675 848 3.013921 GTCTTTGTCAGGGTCAACACAA 58.986 45.455 0.00 0.00 0.00 3.33
676 849 2.639065 GTCTTTGTCAGGGTCAACACA 58.361 47.619 0.00 0.00 0.00 3.72
677 850 1.597663 CGTCTTTGTCAGGGTCAACAC 59.402 52.381 0.00 0.00 0.00 3.32
699 872 1.466025 GGACCGTGTGTGGTGTCCTA 61.466 60.000 0.00 0.00 44.01 2.94
700 873 2.803817 GGACCGTGTGTGGTGTCCT 61.804 63.158 0.00 0.00 44.01 3.85
701 874 2.280592 GGACCGTGTGTGGTGTCC 60.281 66.667 0.00 0.00 44.01 4.02
703 876 4.230002 CCGGACCGTGTGTGGTGT 62.230 66.667 13.94 0.00 44.01 4.16
704 877 4.980805 CCCGGACCGTGTGTGGTG 62.981 72.222 13.94 0.00 44.01 4.17
706 879 3.760700 AAACCCGGACCGTGTGTGG 62.761 63.158 13.94 8.88 0.00 4.17
759 947 0.533755 CAGCGCTGGAAATAGGGAGG 60.534 60.000 29.88 0.00 32.84 4.30
766 954 2.644887 TTCAAGCAGCGCTGGAAAT 58.355 47.368 36.47 0.00 44.47 2.17
770 958 2.042259 TGGATTCAAGCAGCGCTGG 61.042 57.895 36.47 21.38 39.62 4.85
771 959 1.136147 GTGGATTCAAGCAGCGCTG 59.864 57.895 32.83 32.83 39.62 5.18
772 960 0.607489 AAGTGGATTCAAGCAGCGCT 60.607 50.000 2.64 2.64 42.56 5.92
773 961 0.179179 GAAGTGGATTCAAGCAGCGC 60.179 55.000 0.00 0.00 37.88 5.92
774 962 1.159285 TGAAGTGGATTCAAGCAGCG 58.841 50.000 0.00 0.00 45.00 5.18
802 996 1.102154 CAGGCGGTTGGCATAAATCA 58.898 50.000 0.00 0.00 46.16 2.57
823 1017 2.430921 GTCGGTCCTGTCACGCAG 60.431 66.667 0.00 0.00 44.63 5.18
830 1024 0.036306 GATTTGGGTGTCGGTCCTGT 59.964 55.000 0.00 0.00 0.00 4.00
844 1038 6.438259 AGCAATGACAGAGAATGAGATTTG 57.562 37.500 0.00 0.00 0.00 2.32
845 1039 7.463961 AAAGCAATGACAGAGAATGAGATTT 57.536 32.000 0.00 0.00 0.00 2.17
918 1123 3.031736 GGGAGCTGGTGTCTGTTATCTA 58.968 50.000 0.00 0.00 0.00 1.98
939 1145 0.761802 GCCAATGAGTAGGAGGAGGG 59.238 60.000 0.00 0.00 0.00 4.30
1107 1323 0.745128 CAGGGAGCGAGAGTACGTCT 60.745 60.000 0.00 0.00 38.71 4.18
1110 1326 2.409651 GCAGGGAGCGAGAGTACG 59.590 66.667 0.00 0.00 0.00 3.67
1122 1338 1.181098 CCTCTGGTTTGTTGGCAGGG 61.181 60.000 0.00 0.00 0.00 4.45
1125 1341 1.832167 GGCCTCTGGTTTGTTGGCA 60.832 57.895 0.00 0.00 44.85 4.92
1130 1346 1.152756 GTGGTGGCCTCTGGTTTGT 60.153 57.895 3.32 0.00 0.00 2.83
1186 1402 2.221299 CCTGGAGGTTCCGTGGGAA 61.221 63.158 0.00 0.00 40.17 3.97
1188 1404 4.410400 GCCTGGAGGTTCCGTGGG 62.410 72.222 0.00 4.07 40.17 4.61
1206 1422 1.067582 CGCCTTAGCCGGGTAGAAG 59.932 63.158 13.96 11.16 34.57 2.85
1254 1470 0.524862 ACTTGGCGTACTGGTAGACG 59.475 55.000 0.00 0.00 41.97 4.18
1257 1473 1.625616 CGAACTTGGCGTACTGGTAG 58.374 55.000 0.00 0.00 0.00 3.18
1329 1545 0.456221 AGCGGTACAGAACATCCGAG 59.544 55.000 6.63 0.00 44.86 4.63
1337 1553 2.214216 AGGTGCCAGCGGTACAGAA 61.214 57.895 15.13 0.00 40.07 3.02
1407 1623 2.985847 AGCCAGCCGAGCAAAACC 60.986 61.111 0.00 0.00 0.00 3.27
1518 1734 1.204704 CCTCCGACATTGTAGCTGACA 59.795 52.381 0.00 0.00 35.78 3.58
1527 1743 0.745845 CAGCCTTCCCTCCGACATTG 60.746 60.000 0.00 0.00 0.00 2.82
1569 1785 2.755103 GACCCAATCACCAAGATGTTCC 59.245 50.000 0.00 0.00 36.96 3.62
1602 1818 4.340950 GTGTGGAAAACAATCTTCTTCCCA 59.659 41.667 0.00 0.00 41.57 4.37
1638 1854 1.250154 GCACATACCAAAGCCAGCCA 61.250 55.000 0.00 0.00 0.00 4.75
1675 1893 6.899393 AGGTTTCAGTAAATTCTTGATGCA 57.101 33.333 0.00 0.00 0.00 3.96
1707 1930 3.067106 GCACAAAGCAGTAGTAAGCTCA 58.933 45.455 0.00 0.00 44.79 4.26
1708 1931 3.731274 GCACAAAGCAGTAGTAAGCTC 57.269 47.619 0.00 0.00 44.79 4.09
1728 1952 2.169352 ACCATAGCTACACAAGGAGCAG 59.831 50.000 0.00 0.00 41.36 4.24
1733 1957 3.610040 TCACACCATAGCTACACAAGG 57.390 47.619 0.00 0.00 0.00 3.61
1735 1959 5.395214 CCAGTATCACACCATAGCTACACAA 60.395 44.000 0.00 0.00 0.00 3.33
1736 1960 4.099419 CCAGTATCACACCATAGCTACACA 59.901 45.833 0.00 0.00 0.00 3.72
1737 1961 4.341235 TCCAGTATCACACCATAGCTACAC 59.659 45.833 0.00 0.00 0.00 2.90
1749 1973 2.234661 CTGCAGGTTCTCCAGTATCACA 59.765 50.000 5.57 0.00 35.89 3.58
1752 1976 1.804372 CGCTGCAGGTTCTCCAGTATC 60.804 57.143 17.12 0.00 35.89 2.24
1848 2072 6.015603 ACGTGAGGTTAGCTAGAGTTTTTACT 60.016 38.462 0.00 0.00 0.00 2.24
1858 2082 3.119101 ACCATTCACGTGAGGTTAGCTAG 60.119 47.826 20.58 6.54 0.00 3.42
1885 2113 9.238368 CTTTTTATAGGATTTCCAGTAACCACA 57.762 33.333 0.00 0.00 38.89 4.17
1893 2121 9.859152 AGAGGATTCTTTTTATAGGATTTCCAG 57.141 33.333 0.00 0.00 38.89 3.86
1911 2139 7.687941 TGTCCAGAATTTACAAAGAGGATTC 57.312 36.000 0.00 0.00 0.00 2.52
1912 2140 7.340487 GGATGTCCAGAATTTACAAAGAGGATT 59.660 37.037 0.00 0.00 35.64 3.01
1932 2160 7.297391 GGCATAAACAACAAAATTTGGATGTC 58.703 34.615 16.03 6.08 34.93 3.06
2044 2281 1.450669 AAACCGTTGTCCTGCGTGT 60.451 52.632 0.00 0.00 0.00 4.49
2096 2339 6.055588 CCACACCTAAGTTCAGAAAAAGAGA 58.944 40.000 0.00 0.00 0.00 3.10
2097 2340 5.239525 CCCACACCTAAGTTCAGAAAAAGAG 59.760 44.000 0.00 0.00 0.00 2.85
2165 2409 0.884704 TTGGTGCAGCTCCTTTCGTC 60.885 55.000 18.08 0.00 0.00 4.20
2404 2664 3.367630 GCCATGCCTCACATTTAAAAACG 59.632 43.478 0.00 0.00 36.64 3.60
2431 2692 9.778741 AACAAACAATGAACTCTTCTATGAGTA 57.221 29.630 0.00 0.00 45.49 2.59
2473 2735 8.867935 CAAGATATAATCGATGATGACAGGAAC 58.132 37.037 5.43 0.00 0.00 3.62
2558 2830 1.948104 TGCTATGGCATTCGTACACC 58.052 50.000 4.78 0.00 44.28 4.16
2630 2903 2.244486 TTAGGCATGCCATTTTGGGA 57.756 45.000 37.18 11.34 43.78 4.37
2648 2933 7.950512 TGTGATCAAATGTCAGGTTTAACATT 58.049 30.769 0.00 0.00 45.53 2.71
2710 3005 9.387257 GCATTTAGGACATGATATATGACATCA 57.613 33.333 0.00 0.00 36.86 3.07
2884 3212 2.191128 ATGACTCCACTGACTTTGCC 57.809 50.000 0.00 0.00 0.00 4.52
2971 3299 1.378531 GATTGCTGCGGTAATGGTCA 58.621 50.000 14.04 0.00 0.00 4.02
3293 3652 3.119637 CCCATCCACACAAATAAACCGTC 60.120 47.826 0.00 0.00 0.00 4.79
3296 3661 4.340617 TCTCCCATCCACACAAATAAACC 58.659 43.478 0.00 0.00 0.00 3.27
3297 3662 5.418840 ACATCTCCCATCCACACAAATAAAC 59.581 40.000 0.00 0.00 0.00 2.01
3372 3751 1.097547 CATGATCACAGCCCGAACCC 61.098 60.000 0.00 0.00 0.00 4.11
3414 3793 6.245115 TCTTGTCATGTGAACATAGCTTTG 57.755 37.500 2.27 2.27 34.26 2.77
3456 3835 9.390795 CTTTGACAGTAAGAATTCTGAATGTTG 57.609 33.333 23.38 12.43 35.91 3.33
3495 3874 0.041839 GTCAAGCACAACAGCAGACG 60.042 55.000 0.00 0.00 34.05 4.18
3617 3996 9.791820 TGCATCAGATGTAATTTTGTTTATCAG 57.208 29.630 12.18 0.00 0.00 2.90
3701 4080 5.472148 TCACAATCAATGAACAATGGCTTC 58.528 37.500 0.00 0.00 0.00 3.86
3735 4114 9.774413 GCTGTACTATTGTATATTACCTGGTTT 57.226 33.333 3.84 0.00 0.00 3.27
3736 4115 8.930527 TGCTGTACTATTGTATATTACCTGGTT 58.069 33.333 3.84 0.00 0.00 3.67
3737 4116 8.365647 GTGCTGTACTATTGTATATTACCTGGT 58.634 37.037 4.05 4.05 0.00 4.00
3738 4117 8.364894 TGTGCTGTACTATTGTATATTACCTGG 58.635 37.037 0.00 0.00 0.00 4.45
3739 4118 9.758651 TTGTGCTGTACTATTGTATATTACCTG 57.241 33.333 0.00 0.00 0.00 4.00
3745 4124 9.494271 CCTGATTTGTGCTGTACTATTGTATAT 57.506 33.333 0.00 0.00 0.00 0.86
3746 4125 8.482943 ACCTGATTTGTGCTGTACTATTGTATA 58.517 33.333 0.00 0.00 0.00 1.47
3747 4126 7.338710 ACCTGATTTGTGCTGTACTATTGTAT 58.661 34.615 0.00 0.00 0.00 2.29
3748 4127 6.707290 ACCTGATTTGTGCTGTACTATTGTA 58.293 36.000 0.00 0.00 0.00 2.41
3749 4128 5.560724 ACCTGATTTGTGCTGTACTATTGT 58.439 37.500 0.00 0.00 0.00 2.71
3750 4129 7.609760 TTACCTGATTTGTGCTGTACTATTG 57.390 36.000 0.00 0.00 0.00 1.90
3751 4130 9.326413 GTATTACCTGATTTGTGCTGTACTATT 57.674 33.333 0.00 0.00 0.00 1.73
3752 4131 8.482943 TGTATTACCTGATTTGTGCTGTACTAT 58.517 33.333 0.00 0.00 0.00 2.12
3753 4132 7.762615 GTGTATTACCTGATTTGTGCTGTACTA 59.237 37.037 0.00 0.00 0.00 1.82
3754 4133 6.594159 GTGTATTACCTGATTTGTGCTGTACT 59.406 38.462 0.00 0.00 0.00 2.73
3755 4134 6.370442 TGTGTATTACCTGATTTGTGCTGTAC 59.630 38.462 0.00 0.00 0.00 2.90
3756 4135 6.468543 TGTGTATTACCTGATTTGTGCTGTA 58.531 36.000 0.00 0.00 0.00 2.74
3757 4136 5.312895 TGTGTATTACCTGATTTGTGCTGT 58.687 37.500 0.00 0.00 0.00 4.40
3758 4137 5.878332 TGTGTATTACCTGATTTGTGCTG 57.122 39.130 0.00 0.00 0.00 4.41
3859 4266 8.673275 CGAACAATAATAAAATGCTTCGTCATC 58.327 33.333 0.00 0.00 0.00 2.92
3860 4267 8.394877 TCGAACAATAATAAAATGCTTCGTCAT 58.605 29.630 0.00 0.00 33.51 3.06
3861 4268 7.744059 TCGAACAATAATAAAATGCTTCGTCA 58.256 30.769 0.00 0.00 33.51 4.35
3885 4292 5.300969 ACTGCATGTTGTGTGATGTATTC 57.699 39.130 0.00 0.00 0.00 1.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.