Multiple sequence alignment - TraesCS7A01G561000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G561000 chr7A 100.000 2705 0 0 1 2705 732400881 732403585 0.000000e+00 4996
1 TraesCS7A01G561000 chr7A 93.333 345 16 6 1 344 732149640 732149978 1.120000e-138 503
2 TraesCS7A01G561000 chr7A 92.442 344 15 8 1 342 36158837 36158503 5.240000e-132 481
3 TraesCS7A01G561000 chr7A 89.474 95 8 2 372 465 154309439 154309532 4.730000e-23 119
4 TraesCS7A01G561000 chr7D 93.610 1299 63 11 697 1988 633952210 633950925 0.000000e+00 1921
5 TraesCS7A01G561000 chr7D 94.015 685 36 5 2023 2705 633950925 633950244 0.000000e+00 1033
6 TraesCS7A01G561000 chr7D 85.388 219 27 5 483 699 633952455 633952240 3.510000e-54 222
7 TraesCS7A01G561000 chr7D 93.976 83 5 0 375 457 40008452 40008370 2.830000e-25 126
8 TraesCS7A01G561000 chr7B 94.818 907 36 8 1805 2705 742102290 742101389 0.000000e+00 1404
9 TraesCS7A01G561000 chr7B 95.032 785 37 2 1000 1783 742103426 742102643 0.000000e+00 1232
10 TraesCS7A01G561000 chr7B 83.779 561 66 16 457 998 742104019 742103465 2.400000e-140 508
11 TraesCS7A01G561000 chr7B 91.964 224 18 0 2482 2705 742185877 742185654 5.620000e-82 315
12 TraesCS7A01G561000 chr7B 90.698 86 8 0 370 455 677406432 677406517 6.120000e-22 115
13 TraesCS7A01G561000 chr5A 93.103 348 15 7 1 347 706593141 706593480 4.020000e-138 501
14 TraesCS7A01G561000 chr5A 91.667 360 20 8 1 357 32767506 32767858 8.700000e-135 490
15 TraesCS7A01G561000 chr5A 92.486 346 17 7 1 344 685062293 685061955 1.130000e-133 486
16 TraesCS7A01G561000 chr5A 92.197 346 18 7 1 344 32138583 32138245 5.240000e-132 481
17 TraesCS7A01G561000 chr6A 92.754 345 17 6 1 344 7140125 7140462 2.420000e-135 492
18 TraesCS7A01G561000 chr6A 92.464 345 18 6 1 344 579387831 579388168 1.130000e-133 486
19 TraesCS7A01G561000 chr1A 92.464 345 17 6 1 344 529257310 529256974 4.050000e-133 484
20 TraesCS7A01G561000 chr1A 92.771 83 6 0 375 457 98875943 98875861 1.320000e-23 121
21 TraesCS7A01G561000 chr5D 93.976 83 5 0 375 457 397317237 397317155 2.830000e-25 126
22 TraesCS7A01G561000 chr4D 92.771 83 6 0 372 454 341214731 341214813 1.320000e-23 121
23 TraesCS7A01G561000 chr3D 92.771 83 6 0 375 457 295552346 295552264 1.320000e-23 121
24 TraesCS7A01G561000 chr3D 92.771 83 6 0 375 457 298241164 298241082 1.320000e-23 121
25 TraesCS7A01G561000 chr1D 92.771 83 6 0 375 457 309071960 309071878 1.320000e-23 121


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G561000 chr7A 732400881 732403585 2704 False 4996.000000 4996 100.000000 1 2705 1 chr7A.!!$F3 2704
1 TraesCS7A01G561000 chr7D 633950244 633952455 2211 True 1058.666667 1921 91.004333 483 2705 3 chr7D.!!$R2 2222
2 TraesCS7A01G561000 chr7B 742101389 742104019 2630 True 1048.000000 1404 91.209667 457 2705 3 chr7B.!!$R2 2248

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
149 150 0.179000 ATCTAGTTTCAGCCAGCCGG 59.821 55.0 0.0 0.0 0.00 6.13 F
151 152 0.321653 CTAGTTTCAGCCAGCCGGTT 60.322 55.0 1.9 0.0 33.28 4.44 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1459 1538 0.035317 TTTGAGGCGATGCAGTCACT 59.965 50.000 0.00 0.00 0.00 3.41 R
2080 2500 1.067821 CCTTAAGGCTCGCGAGAATCT 59.932 52.381 38.74 26.58 41.32 2.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.587095 TCGCTACTCACCCAGACG 58.413 61.111 0.00 0.00 0.00 4.18
18 19 2.044555 TCGCTACTCACCCAGACGG 61.045 63.158 0.00 0.00 37.81 4.79
19 20 2.044555 CGCTACTCACCCAGACGGA 61.045 63.158 0.00 0.00 34.64 4.69
20 21 1.810532 GCTACTCACCCAGACGGAG 59.189 63.158 0.00 0.00 34.64 4.63
21 22 1.668101 GCTACTCACCCAGACGGAGG 61.668 65.000 0.00 0.00 34.64 4.30
22 23 1.668101 CTACTCACCCAGACGGAGGC 61.668 65.000 0.00 0.00 34.64 4.70
23 24 3.775654 CTCACCCAGACGGAGGCC 61.776 72.222 0.00 0.00 34.64 5.19
24 25 4.631740 TCACCCAGACGGAGGCCA 62.632 66.667 5.01 0.00 34.64 5.36
25 26 4.087892 CACCCAGACGGAGGCCAG 62.088 72.222 5.01 0.00 34.64 4.85
29 30 3.465403 CAGACGGAGGCCAGGGAG 61.465 72.222 5.01 0.00 0.00 4.30
33 34 3.801997 CGGAGGCCAGGGAGCATT 61.802 66.667 5.01 0.00 0.00 3.56
34 35 2.685999 GGAGGCCAGGGAGCATTT 59.314 61.111 5.01 0.00 0.00 2.32
35 36 1.755783 GGAGGCCAGGGAGCATTTG 60.756 63.158 5.01 0.00 0.00 2.32
36 37 1.755783 GAGGCCAGGGAGCATTTGG 60.756 63.158 5.01 0.00 35.06 3.28
37 38 2.037847 GGCCAGGGAGCATTTGGT 59.962 61.111 0.00 0.00 34.43 3.67
38 39 1.610379 GGCCAGGGAGCATTTGGTT 60.610 57.895 0.00 0.00 34.43 3.67
39 40 0.324275 GGCCAGGGAGCATTTGGTTA 60.324 55.000 0.00 0.00 34.43 2.85
40 41 1.689258 GGCCAGGGAGCATTTGGTTAT 60.689 52.381 0.00 0.00 34.43 1.89
41 42 2.110578 GCCAGGGAGCATTTGGTTATT 58.889 47.619 0.00 0.00 34.43 1.40
42 43 2.159057 GCCAGGGAGCATTTGGTTATTG 60.159 50.000 0.00 0.00 34.43 1.90
43 44 2.431782 CCAGGGAGCATTTGGTTATTGG 59.568 50.000 0.00 0.00 0.00 3.16
44 45 2.431782 CAGGGAGCATTTGGTTATTGGG 59.568 50.000 0.00 0.00 0.00 4.12
45 46 2.044353 AGGGAGCATTTGGTTATTGGGT 59.956 45.455 0.00 0.00 0.00 4.51
46 47 2.430694 GGGAGCATTTGGTTATTGGGTC 59.569 50.000 0.00 0.00 0.00 4.46
47 48 3.365472 GGAGCATTTGGTTATTGGGTCT 58.635 45.455 0.00 0.00 0.00 3.85
48 49 3.769300 GGAGCATTTGGTTATTGGGTCTT 59.231 43.478 0.00 0.00 0.00 3.01
49 50 4.222810 GGAGCATTTGGTTATTGGGTCTTT 59.777 41.667 0.00 0.00 0.00 2.52
50 51 5.405935 AGCATTTGGTTATTGGGTCTTTC 57.594 39.130 0.00 0.00 0.00 2.62
51 52 4.222810 AGCATTTGGTTATTGGGTCTTTCC 59.777 41.667 0.00 0.00 0.00 3.13
52 53 4.743493 CATTTGGTTATTGGGTCTTTCCG 58.257 43.478 0.00 0.00 37.00 4.30
53 54 3.791953 TTGGTTATTGGGTCTTTCCGA 57.208 42.857 0.00 0.00 37.00 4.55
54 55 4.310022 TTGGTTATTGGGTCTTTCCGAT 57.690 40.909 0.00 0.00 37.00 4.18
55 56 3.616219 TGGTTATTGGGTCTTTCCGATG 58.384 45.455 0.00 0.00 37.00 3.84
56 57 2.949644 GGTTATTGGGTCTTTCCGATGG 59.050 50.000 0.00 0.00 37.00 3.51
57 58 2.949644 GTTATTGGGTCTTTCCGATGGG 59.050 50.000 0.00 0.00 37.00 4.00
58 59 1.295020 ATTGGGTCTTTCCGATGGGA 58.705 50.000 0.00 0.00 41.83 4.37
59 60 0.618458 TTGGGTCTTTCCGATGGGAG 59.382 55.000 0.00 0.00 44.98 4.30
60 61 0.252513 TGGGTCTTTCCGATGGGAGA 60.253 55.000 0.00 0.00 44.98 3.71
61 62 1.132500 GGGTCTTTCCGATGGGAGAT 58.868 55.000 0.00 0.00 44.98 2.75
62 63 1.202698 GGGTCTTTCCGATGGGAGATG 60.203 57.143 0.00 0.00 44.98 2.90
63 64 1.202698 GGTCTTTCCGATGGGAGATGG 60.203 57.143 0.00 0.00 44.98 3.51
64 65 1.486726 GTCTTTCCGATGGGAGATGGT 59.513 52.381 0.00 0.00 44.98 3.55
65 66 2.698797 GTCTTTCCGATGGGAGATGGTA 59.301 50.000 0.00 0.00 44.98 3.25
66 67 2.965831 TCTTTCCGATGGGAGATGGTAG 59.034 50.000 0.00 0.00 44.98 3.18
67 68 1.048601 TTCCGATGGGAGATGGTAGC 58.951 55.000 0.00 0.00 44.98 3.58
68 69 0.188587 TCCGATGGGAGATGGTAGCT 59.811 55.000 0.00 0.00 37.43 3.32
69 70 0.605589 CCGATGGGAGATGGTAGCTC 59.394 60.000 0.00 0.00 34.06 4.09
70 71 0.242286 CGATGGGAGATGGTAGCTCG 59.758 60.000 0.00 0.00 33.19 5.03
71 72 0.605589 GATGGGAGATGGTAGCTCGG 59.394 60.000 0.00 0.00 33.19 4.63
72 73 0.833834 ATGGGAGATGGTAGCTCGGG 60.834 60.000 0.00 0.00 33.19 5.14
73 74 1.152525 GGGAGATGGTAGCTCGGGA 60.153 63.158 0.00 0.00 33.19 5.14
74 75 0.543174 GGGAGATGGTAGCTCGGGAT 60.543 60.000 0.00 0.00 33.19 3.85
75 76 1.272536 GGGAGATGGTAGCTCGGGATA 60.273 57.143 0.00 0.00 33.19 2.59
76 77 2.624557 GGGAGATGGTAGCTCGGGATAT 60.625 54.545 0.00 0.00 33.19 1.63
77 78 2.691011 GGAGATGGTAGCTCGGGATATC 59.309 54.545 0.00 0.00 33.19 1.63
78 79 3.626222 GGAGATGGTAGCTCGGGATATCT 60.626 52.174 2.05 0.00 33.19 1.98
79 80 4.020543 GAGATGGTAGCTCGGGATATCTT 58.979 47.826 2.05 0.00 0.00 2.40
80 81 4.020543 AGATGGTAGCTCGGGATATCTTC 58.979 47.826 2.05 0.00 0.00 2.87
81 82 3.238788 TGGTAGCTCGGGATATCTTCA 57.761 47.619 2.05 0.00 0.00 3.02
82 83 3.572642 TGGTAGCTCGGGATATCTTCAA 58.427 45.455 2.05 0.00 0.00 2.69
83 84 3.321111 TGGTAGCTCGGGATATCTTCAAC 59.679 47.826 2.05 0.00 0.00 3.18
84 85 3.306156 GGTAGCTCGGGATATCTTCAACC 60.306 52.174 2.05 0.00 0.00 3.77
85 86 1.341531 AGCTCGGGATATCTTCAACCG 59.658 52.381 10.16 10.16 45.52 4.44
86 87 1.605712 GCTCGGGATATCTTCAACCGG 60.606 57.143 14.77 0.00 44.36 5.28
87 88 1.687123 CTCGGGATATCTTCAACCGGT 59.313 52.381 0.00 0.00 44.36 5.28
88 89 2.102588 CTCGGGATATCTTCAACCGGTT 59.897 50.000 15.86 15.86 44.36 4.44
89 90 2.502538 TCGGGATATCTTCAACCGGTTT 59.497 45.455 19.55 5.23 44.36 3.27
90 91 2.612212 CGGGATATCTTCAACCGGTTTG 59.388 50.000 19.55 13.53 40.79 2.93
91 92 2.949644 GGGATATCTTCAACCGGTTTGG 59.050 50.000 19.55 7.84 46.41 3.28
92 93 3.371166 GGGATATCTTCAACCGGTTTGGA 60.371 47.826 19.55 15.86 42.00 3.53
93 94 4.461198 GGATATCTTCAACCGGTTTGGAT 58.539 43.478 19.55 21.16 42.00 3.41
94 95 4.275936 GGATATCTTCAACCGGTTTGGATG 59.724 45.833 19.55 14.79 41.73 3.51
95 96 1.904287 TCTTCAACCGGTTTGGATGG 58.096 50.000 19.55 5.30 40.78 3.51
96 97 0.243636 CTTCAACCGGTTTGGATGGC 59.756 55.000 19.55 0.00 40.78 4.40
97 98 1.519751 TTCAACCGGTTTGGATGGCG 61.520 55.000 19.55 3.62 40.78 5.69
98 99 2.675075 AACCGGTTTGGATGGCGG 60.675 61.111 15.86 0.00 42.00 6.13
99 100 3.501040 AACCGGTTTGGATGGCGGT 62.501 57.895 15.86 0.00 42.00 5.68
100 101 3.131478 CCGGTTTGGATGGCGGTC 61.131 66.667 0.00 0.00 42.00 4.79
101 102 2.359354 CGGTTTGGATGGCGGTCA 60.359 61.111 0.00 0.00 0.00 4.02
102 103 1.748879 CGGTTTGGATGGCGGTCAT 60.749 57.895 0.00 0.00 39.13 3.06
103 104 1.809207 GGTTTGGATGGCGGTCATG 59.191 57.895 0.00 0.00 35.97 3.07
104 105 0.965363 GGTTTGGATGGCGGTCATGT 60.965 55.000 0.00 0.00 35.97 3.21
105 106 1.680555 GGTTTGGATGGCGGTCATGTA 60.681 52.381 0.00 0.00 35.97 2.29
106 107 2.088423 GTTTGGATGGCGGTCATGTAA 58.912 47.619 0.00 0.00 35.97 2.41
107 108 2.687935 GTTTGGATGGCGGTCATGTAAT 59.312 45.455 0.00 0.00 35.97 1.89
108 109 3.847671 TTGGATGGCGGTCATGTAATA 57.152 42.857 0.00 0.00 35.97 0.98
109 110 3.401033 TGGATGGCGGTCATGTAATAG 57.599 47.619 0.00 0.00 35.97 1.73
110 111 2.038426 TGGATGGCGGTCATGTAATAGG 59.962 50.000 0.00 0.00 35.97 2.57
111 112 2.301870 GGATGGCGGTCATGTAATAGGA 59.698 50.000 0.00 0.00 35.97 2.94
112 113 3.055094 GGATGGCGGTCATGTAATAGGAT 60.055 47.826 0.00 0.00 35.97 3.24
113 114 4.161565 GGATGGCGGTCATGTAATAGGATA 59.838 45.833 0.00 0.00 35.97 2.59
114 115 4.801330 TGGCGGTCATGTAATAGGATAG 57.199 45.455 0.00 0.00 0.00 2.08
115 116 3.513912 TGGCGGTCATGTAATAGGATAGG 59.486 47.826 0.00 0.00 0.00 2.57
116 117 3.522553 GCGGTCATGTAATAGGATAGGC 58.477 50.000 0.00 0.00 0.00 3.93
117 118 3.056107 GCGGTCATGTAATAGGATAGGCA 60.056 47.826 0.00 0.00 0.00 4.75
118 119 4.383118 GCGGTCATGTAATAGGATAGGCAT 60.383 45.833 0.00 0.00 0.00 4.40
119 120 5.163447 GCGGTCATGTAATAGGATAGGCATA 60.163 44.000 0.00 0.00 0.00 3.14
120 121 6.463049 GCGGTCATGTAATAGGATAGGCATAT 60.463 42.308 0.00 0.00 0.00 1.78
121 122 7.255836 GCGGTCATGTAATAGGATAGGCATATA 60.256 40.741 0.00 0.00 0.00 0.86
122 123 8.300286 CGGTCATGTAATAGGATAGGCATATAG 58.700 40.741 0.00 0.00 0.00 1.31
123 124 9.148879 GGTCATGTAATAGGATAGGCATATAGT 57.851 37.037 0.00 0.00 0.00 2.12
144 145 6.869206 AGTTTACCTATCTAGTTTCAGCCA 57.131 37.500 0.00 0.00 0.00 4.75
145 146 6.879400 AGTTTACCTATCTAGTTTCAGCCAG 58.121 40.000 0.00 0.00 0.00 4.85
146 147 3.828875 ACCTATCTAGTTTCAGCCAGC 57.171 47.619 0.00 0.00 0.00 4.85
147 148 2.436173 ACCTATCTAGTTTCAGCCAGCC 59.564 50.000 0.00 0.00 0.00 4.85
148 149 2.546795 CCTATCTAGTTTCAGCCAGCCG 60.547 54.545 0.00 0.00 0.00 5.52
149 150 0.179000 ATCTAGTTTCAGCCAGCCGG 59.821 55.000 0.00 0.00 0.00 6.13
150 151 1.192146 TCTAGTTTCAGCCAGCCGGT 61.192 55.000 1.90 0.00 33.28 5.28
151 152 0.321653 CTAGTTTCAGCCAGCCGGTT 60.322 55.000 1.90 0.00 33.28 4.44
152 153 0.605319 TAGTTTCAGCCAGCCGGTTG 60.605 55.000 11.98 11.98 44.55 3.77
153 154 2.193536 GTTTCAGCCAGCCGGTTGT 61.194 57.895 17.69 0.00 43.66 3.32
154 155 2.192861 TTTCAGCCAGCCGGTTGTG 61.193 57.895 17.69 9.93 43.66 3.33
155 156 4.641645 TCAGCCAGCCGGTTGTGG 62.642 66.667 17.69 15.43 43.66 4.17
165 166 1.529226 CCGGTTGTGGCAGTTATTCA 58.471 50.000 0.00 0.00 0.00 2.57
166 167 2.091541 CCGGTTGTGGCAGTTATTCAT 58.908 47.619 0.00 0.00 0.00 2.57
167 168 2.159393 CCGGTTGTGGCAGTTATTCATG 60.159 50.000 0.00 0.00 0.00 3.07
168 169 2.159393 CGGTTGTGGCAGTTATTCATGG 60.159 50.000 0.00 0.00 0.00 3.66
169 170 2.417243 GGTTGTGGCAGTTATTCATGGC 60.417 50.000 0.00 0.00 42.01 4.40
170 171 2.493278 GTTGTGGCAGTTATTCATGGCT 59.507 45.455 0.00 0.00 42.16 4.75
171 172 3.643199 TGTGGCAGTTATTCATGGCTA 57.357 42.857 0.00 0.00 42.16 3.93
172 173 3.544684 TGTGGCAGTTATTCATGGCTAG 58.455 45.455 0.00 0.00 42.16 3.42
173 174 3.054434 TGTGGCAGTTATTCATGGCTAGT 60.054 43.478 0.00 0.00 42.16 2.57
174 175 3.313526 GTGGCAGTTATTCATGGCTAGTG 59.686 47.826 0.00 0.00 42.16 2.74
175 176 2.880890 GGCAGTTATTCATGGCTAGTGG 59.119 50.000 0.00 0.00 38.83 4.00
176 177 2.880890 GCAGTTATTCATGGCTAGTGGG 59.119 50.000 0.00 0.00 0.00 4.61
177 178 3.685550 GCAGTTATTCATGGCTAGTGGGT 60.686 47.826 0.00 0.00 0.00 4.51
178 179 3.879295 CAGTTATTCATGGCTAGTGGGTG 59.121 47.826 0.00 0.00 0.00 4.61
179 180 3.523564 AGTTATTCATGGCTAGTGGGTGT 59.476 43.478 0.00 0.00 0.00 4.16
180 181 4.018415 AGTTATTCATGGCTAGTGGGTGTT 60.018 41.667 0.00 0.00 0.00 3.32
181 182 2.969821 TTCATGGCTAGTGGGTGTTT 57.030 45.000 0.00 0.00 0.00 2.83
182 183 2.489938 TCATGGCTAGTGGGTGTTTC 57.510 50.000 0.00 0.00 0.00 2.78
183 184 1.985159 TCATGGCTAGTGGGTGTTTCT 59.015 47.619 0.00 0.00 0.00 2.52
184 185 3.178046 TCATGGCTAGTGGGTGTTTCTA 58.822 45.455 0.00 0.00 0.00 2.10
185 186 3.197766 TCATGGCTAGTGGGTGTTTCTAG 59.802 47.826 0.00 0.00 35.60 2.43
187 188 2.025589 GCTAGTGGGTGTTTCTAGCC 57.974 55.000 10.99 0.00 46.04 3.93
188 189 1.407025 GCTAGTGGGTGTTTCTAGCCC 60.407 57.143 10.99 0.00 46.04 5.19
189 190 2.188817 CTAGTGGGTGTTTCTAGCCCT 58.811 52.381 4.26 0.00 42.77 5.19
190 191 1.446016 AGTGGGTGTTTCTAGCCCTT 58.554 50.000 4.26 0.00 42.77 3.95
191 192 1.780919 AGTGGGTGTTTCTAGCCCTTT 59.219 47.619 4.26 0.00 42.77 3.11
192 193 2.177016 AGTGGGTGTTTCTAGCCCTTTT 59.823 45.455 4.26 0.00 42.77 2.27
193 194 2.963101 GTGGGTGTTTCTAGCCCTTTTT 59.037 45.455 4.26 0.00 42.77 1.94
194 195 2.962421 TGGGTGTTTCTAGCCCTTTTTG 59.038 45.455 4.26 0.00 42.77 2.44
195 196 2.299013 GGGTGTTTCTAGCCCTTTTTGG 59.701 50.000 0.00 0.00 39.31 3.28
205 206 1.691196 CCCTTTTTGGCTCTGTGTGA 58.309 50.000 0.00 0.00 0.00 3.58
206 207 1.610522 CCCTTTTTGGCTCTGTGTGAG 59.389 52.381 0.00 0.00 45.33 3.51
252 253 6.999705 TTACTTTTAGAGACCTTGGTACCA 57.000 37.500 11.60 11.60 0.00 3.25
253 254 7.563724 TTACTTTTAGAGACCTTGGTACCAT 57.436 36.000 17.17 0.00 0.00 3.55
254 255 5.805728 ACTTTTAGAGACCTTGGTACCATG 58.194 41.667 17.17 18.06 0.00 3.66
255 256 5.309806 ACTTTTAGAGACCTTGGTACCATGT 59.690 40.000 17.17 16.13 0.00 3.21
256 257 5.836024 TTTAGAGACCTTGGTACCATGTT 57.164 39.130 17.17 6.47 0.00 2.71
257 258 3.703001 AGAGACCTTGGTACCATGTTG 57.297 47.619 17.17 8.82 0.00 3.33
258 259 2.305927 AGAGACCTTGGTACCATGTTGG 59.694 50.000 17.17 17.09 45.02 3.77
259 260 1.173913 GACCTTGGTACCATGTTGGC 58.826 55.000 17.17 4.76 42.67 4.52
260 261 0.480690 ACCTTGGTACCATGTTGGCA 59.519 50.000 17.17 0.00 42.67 4.92
261 262 0.887933 CCTTGGTACCATGTTGGCAC 59.112 55.000 17.17 0.00 42.67 5.01
262 263 1.547675 CCTTGGTACCATGTTGGCACT 60.548 52.381 17.17 0.00 42.67 4.40
263 264 1.541147 CTTGGTACCATGTTGGCACTG 59.459 52.381 17.17 0.00 42.67 3.66
264 265 0.893270 TGGTACCATGTTGGCACTGC 60.893 55.000 11.60 0.00 42.67 4.40
265 266 1.501741 GTACCATGTTGGCACTGCG 59.498 57.895 0.00 0.00 42.67 5.18
266 267 1.072332 TACCATGTTGGCACTGCGT 59.928 52.632 0.00 0.00 42.67 5.24
267 268 0.536233 TACCATGTTGGCACTGCGTT 60.536 50.000 0.00 0.00 42.67 4.84
268 269 0.536233 ACCATGTTGGCACTGCGTTA 60.536 50.000 0.00 0.00 42.67 3.18
269 270 0.810648 CCATGTTGGCACTGCGTTAT 59.189 50.000 0.00 0.00 0.00 1.89
270 271 1.202114 CCATGTTGGCACTGCGTTATT 59.798 47.619 0.00 0.00 0.00 1.40
271 272 2.352617 CCATGTTGGCACTGCGTTATTT 60.353 45.455 0.00 0.00 0.00 1.40
272 273 2.414058 TGTTGGCACTGCGTTATTTG 57.586 45.000 0.00 0.00 0.00 2.32
273 274 1.950216 TGTTGGCACTGCGTTATTTGA 59.050 42.857 0.00 0.00 0.00 2.69
274 275 2.556189 TGTTGGCACTGCGTTATTTGAT 59.444 40.909 0.00 0.00 0.00 2.57
275 276 3.005261 TGTTGGCACTGCGTTATTTGATT 59.995 39.130 0.00 0.00 0.00 2.57
276 277 4.216472 TGTTGGCACTGCGTTATTTGATTA 59.784 37.500 0.00 0.00 0.00 1.75
277 278 5.157781 GTTGGCACTGCGTTATTTGATTAA 58.842 37.500 0.00 0.00 0.00 1.40
278 279 5.574891 TGGCACTGCGTTATTTGATTAAT 57.425 34.783 0.00 0.00 0.00 1.40
279 280 6.685527 TGGCACTGCGTTATTTGATTAATA 57.314 33.333 0.00 0.00 0.00 0.98
280 281 7.089770 TGGCACTGCGTTATTTGATTAATAA 57.910 32.000 0.00 0.00 36.57 1.40
281 282 7.192913 TGGCACTGCGTTATTTGATTAATAAG 58.807 34.615 0.00 0.00 38.92 1.73
282 283 7.066404 TGGCACTGCGTTATTTGATTAATAAGA 59.934 33.333 0.00 0.00 38.92 2.10
283 284 8.076178 GGCACTGCGTTATTTGATTAATAAGAT 58.924 33.333 0.00 0.00 38.92 2.40
284 285 8.895845 GCACTGCGTTATTTGATTAATAAGATG 58.104 33.333 0.00 0.00 38.92 2.90
285 286 9.385902 CACTGCGTTATTTGATTAATAAGATGG 57.614 33.333 0.00 0.00 38.92 3.51
286 287 8.076178 ACTGCGTTATTTGATTAATAAGATGGC 58.924 33.333 0.00 0.00 38.92 4.40
287 288 7.367285 TGCGTTATTTGATTAATAAGATGGCC 58.633 34.615 0.00 0.00 38.92 5.36
288 289 6.523201 GCGTTATTTGATTAATAAGATGGCCG 59.477 38.462 0.00 0.00 38.92 6.13
289 290 7.581476 CGTTATTTGATTAATAAGATGGCCGT 58.419 34.615 0.00 0.00 38.92 5.68
290 291 8.714179 CGTTATTTGATTAATAAGATGGCCGTA 58.286 33.333 0.00 0.00 38.92 4.02
293 294 6.494893 TTGATTAATAAGATGGCCGTATGC 57.505 37.500 0.00 0.00 40.16 3.14
294 295 5.555966 TGATTAATAAGATGGCCGTATGCA 58.444 37.500 0.00 0.00 43.89 3.96
295 296 6.179756 TGATTAATAAGATGGCCGTATGCAT 58.820 36.000 3.79 3.79 43.89 3.96
296 297 6.316140 TGATTAATAAGATGGCCGTATGCATC 59.684 38.462 0.19 0.00 43.89 3.91
297 298 3.988976 ATAAGATGGCCGTATGCATCT 57.011 42.857 0.19 0.00 43.89 2.90
298 299 2.645838 AAGATGGCCGTATGCATCTT 57.354 45.000 0.19 2.26 43.89 2.40
299 300 3.769739 AAGATGGCCGTATGCATCTTA 57.230 42.857 0.19 0.00 41.65 2.10
300 301 3.988976 AGATGGCCGTATGCATCTTAT 57.011 42.857 0.19 0.00 43.89 1.73
301 302 4.292186 AGATGGCCGTATGCATCTTATT 57.708 40.909 0.19 0.00 43.89 1.40
302 303 4.256920 AGATGGCCGTATGCATCTTATTC 58.743 43.478 0.19 0.00 43.89 1.75
303 304 3.769739 TGGCCGTATGCATCTTATTCT 57.230 42.857 0.19 0.00 43.89 2.40
304 305 3.402110 TGGCCGTATGCATCTTATTCTG 58.598 45.455 0.19 0.00 43.89 3.02
305 306 3.070878 TGGCCGTATGCATCTTATTCTGA 59.929 43.478 0.19 0.00 43.89 3.27
306 307 4.256920 GGCCGTATGCATCTTATTCTGAT 58.743 43.478 0.19 0.00 43.89 2.90
307 308 4.093998 GGCCGTATGCATCTTATTCTGATG 59.906 45.833 0.19 0.00 43.89 3.07
315 316 3.482156 TCTTATTCTGATGCAGAGGCC 57.518 47.619 0.00 0.00 41.75 5.19
316 317 2.141517 CTTATTCTGATGCAGAGGCCG 58.858 52.381 0.00 0.00 41.75 6.13
317 318 0.394192 TATTCTGATGCAGAGGCCGG 59.606 55.000 0.00 0.00 41.75 6.13
318 319 2.335092 ATTCTGATGCAGAGGCCGGG 62.335 60.000 2.18 0.00 41.75 5.73
319 320 4.559063 CTGATGCAGAGGCCGGGG 62.559 72.222 2.18 0.00 40.13 5.73
321 322 3.564218 GATGCAGAGGCCGGGGAT 61.564 66.667 2.18 0.00 40.13 3.85
322 323 3.099170 ATGCAGAGGCCGGGGATT 61.099 61.111 2.18 0.00 40.13 3.01
323 324 2.631012 GATGCAGAGGCCGGGGATTT 62.631 60.000 2.18 0.00 40.13 2.17
324 325 2.043953 GCAGAGGCCGGGGATTTT 60.044 61.111 2.18 0.00 0.00 1.82
325 326 1.682344 GCAGAGGCCGGGGATTTTT 60.682 57.895 2.18 0.00 0.00 1.94
326 327 1.667154 GCAGAGGCCGGGGATTTTTC 61.667 60.000 2.18 0.00 0.00 2.29
327 328 1.037579 CAGAGGCCGGGGATTTTTCC 61.038 60.000 2.18 0.00 0.00 3.13
338 339 4.610605 GGGATTTTTCCCCTTTTCGAAA 57.389 40.909 6.47 6.47 44.18 3.46
339 340 4.963373 GGGATTTTTCCCCTTTTCGAAAA 58.037 39.130 21.35 21.35 44.18 2.29
340 341 5.369833 GGGATTTTTCCCCTTTTCGAAAAA 58.630 37.500 22.67 6.71 46.38 1.94
363 364 5.733226 AAAGATTTTTGTTTTTGCGAGGG 57.267 34.783 0.00 0.00 0.00 4.30
364 365 4.664150 AGATTTTTGTTTTTGCGAGGGA 57.336 36.364 0.00 0.00 0.00 4.20
365 366 4.620982 AGATTTTTGTTTTTGCGAGGGAG 58.379 39.130 0.00 0.00 0.00 4.30
366 367 4.340950 AGATTTTTGTTTTTGCGAGGGAGA 59.659 37.500 0.00 0.00 0.00 3.71
367 368 3.430333 TTTTGTTTTTGCGAGGGAGAC 57.570 42.857 0.00 0.00 0.00 3.36
387 388 7.583230 GGAGACCAGTATTCTATGTTACTACG 58.417 42.308 0.00 0.00 0.00 3.51
388 389 6.968250 AGACCAGTATTCTATGTTACTACGC 58.032 40.000 0.00 0.00 0.00 4.42
389 390 6.544931 AGACCAGTATTCTATGTTACTACGCA 59.455 38.462 0.00 0.00 0.00 5.24
390 391 7.230913 AGACCAGTATTCTATGTTACTACGCAT 59.769 37.037 0.00 0.00 0.00 4.73
391 392 7.723324 ACCAGTATTCTATGTTACTACGCATT 58.277 34.615 0.00 0.00 0.00 3.56
392 393 8.853126 ACCAGTATTCTATGTTACTACGCATTA 58.147 33.333 0.00 0.00 0.00 1.90
393 394 9.856488 CCAGTATTCTATGTTACTACGCATTAT 57.144 33.333 0.00 0.00 0.00 1.28
395 396 9.856488 AGTATTCTATGTTACTACGCATTATGG 57.144 33.333 0.00 0.00 0.00 2.74
396 397 9.850628 GTATTCTATGTTACTACGCATTATGGA 57.149 33.333 0.00 0.00 0.00 3.41
398 399 8.757164 TTCTATGTTACTACGCATTATGGATG 57.243 34.615 0.00 0.00 38.85 3.51
399 400 7.892609 TCTATGTTACTACGCATTATGGATGT 58.107 34.615 0.00 0.00 38.07 3.06
400 401 9.016438 TCTATGTTACTACGCATTATGGATGTA 57.984 33.333 0.00 0.00 38.07 2.29
401 402 9.290483 CTATGTTACTACGCATTATGGATGTAG 57.710 37.037 0.00 0.00 38.07 2.74
402 403 7.046292 TGTTACTACGCATTATGGATGTAGT 57.954 36.000 8.23 8.23 45.46 2.73
403 404 8.168790 TGTTACTACGCATTATGGATGTAGTA 57.831 34.615 6.48 6.48 42.73 1.82
404 405 8.799367 TGTTACTACGCATTATGGATGTAGTAT 58.201 33.333 10.33 0.00 43.92 2.12
405 406 9.286946 GTTACTACGCATTATGGATGTAGTATC 57.713 37.037 10.33 7.10 43.92 2.24
406 407 7.462571 ACTACGCATTATGGATGTAGTATCA 57.537 36.000 1.78 0.00 42.73 2.15
407 408 8.067751 ACTACGCATTATGGATGTAGTATCAT 57.932 34.615 1.78 0.00 42.73 2.45
408 409 9.185680 ACTACGCATTATGGATGTAGTATCATA 57.814 33.333 1.78 0.00 42.73 2.15
409 410 9.452065 CTACGCATTATGGATGTAGTATCATAC 57.548 37.037 0.00 0.00 38.07 2.39
410 411 7.836842 ACGCATTATGGATGTAGTATCATACA 58.163 34.615 0.00 0.00 41.99 2.29
411 412 7.759886 ACGCATTATGGATGTAGTATCATACAC 59.240 37.037 0.00 0.00 40.81 2.90
412 413 7.976175 CGCATTATGGATGTAGTATCATACACT 59.024 37.037 0.00 0.00 40.81 3.55
449 450 9.819267 GCAAAATACTAGTATATGATACTCCCC 57.181 37.037 23.13 7.38 0.00 4.81
455 456 7.337167 ACTAGTATATGATACTCCCCACTACG 58.663 42.308 0.00 0.00 0.00 3.51
456 457 6.384342 AGTATATGATACTCCCCACTACGA 57.616 41.667 0.00 0.00 0.00 3.43
457 458 6.787170 AGTATATGATACTCCCCACTACGAA 58.213 40.000 0.00 0.00 0.00 3.85
458 459 7.411808 AGTATATGATACTCCCCACTACGAAT 58.588 38.462 0.00 0.00 0.00 3.34
459 460 7.894364 AGTATATGATACTCCCCACTACGAATT 59.106 37.037 0.00 0.00 0.00 2.17
460 461 9.182214 GTATATGATACTCCCCACTACGAATTA 57.818 37.037 0.00 0.00 0.00 1.40
461 462 5.779529 TGATACTCCCCACTACGAATTAC 57.220 43.478 0.00 0.00 0.00 1.89
462 463 4.586001 TGATACTCCCCACTACGAATTACC 59.414 45.833 0.00 0.00 0.00 2.85
463 464 3.111741 ACTCCCCACTACGAATTACCT 57.888 47.619 0.00 0.00 0.00 3.08
464 465 4.255510 ACTCCCCACTACGAATTACCTA 57.744 45.455 0.00 0.00 0.00 3.08
472 473 7.177921 CCCCACTACGAATTACCTATTCATCTA 59.822 40.741 0.00 0.00 42.34 1.98
548 554 1.282570 ACATTCTTTGTGCACGCGG 59.717 52.632 12.47 4.40 37.11 6.46
553 559 3.536498 CTTTGTGCACGCGGGTTCC 62.536 63.158 11.45 0.00 0.00 3.62
574 580 4.585162 TCCTAGATTCGTCTCCTCAATTCC 59.415 45.833 0.00 0.00 0.00 3.01
664 671 7.044181 TGGATCAGTATCAACTTGAGATCAAC 58.956 38.462 15.45 5.35 35.70 3.18
671 678 3.069586 TCAACTTGAGATCAACAGGTCGT 59.930 43.478 7.79 0.00 0.00 4.34
699 706 2.068837 TTGACAATCGACCACGTACC 57.931 50.000 0.00 0.00 40.69 3.34
700 707 0.960286 TGACAATCGACCACGTACCA 59.040 50.000 0.00 0.00 40.69 3.25
714 753 3.752412 CGTACCACGTGTAGATGAAGA 57.248 47.619 15.65 0.00 36.74 2.87
729 768 4.469945 AGATGAAGAGGGGAAATACGAACA 59.530 41.667 0.00 0.00 0.00 3.18
787 826 7.946655 TCACACGGATCAGATTGATATAAAC 57.053 36.000 0.00 0.00 37.20 2.01
788 827 6.640907 TCACACGGATCAGATTGATATAAACG 59.359 38.462 0.00 0.00 37.20 3.60
831 872 2.614057 GCTTCCGCTAACTGTGCATTAT 59.386 45.455 0.00 0.00 0.00 1.28
853 894 2.032054 ACAACATTAATGCAGGCGATCG 59.968 45.455 15.48 11.69 0.00 3.69
874 916 6.321848 TCGTCGTATCTGCCAGAATAATTA 57.678 37.500 0.00 0.00 0.00 1.40
940 982 6.742559 TTTGATACTCCCCTATAAGACCAC 57.257 41.667 0.00 0.00 0.00 4.16
941 983 4.748701 TGATACTCCCCTATAAGACCACC 58.251 47.826 0.00 0.00 0.00 4.61
942 984 4.171243 TGATACTCCCCTATAAGACCACCA 59.829 45.833 0.00 0.00 0.00 4.17
982 1024 5.670835 GCAAACACACCAACAATTTCACTTG 60.671 40.000 0.00 0.00 0.00 3.16
1036 1115 1.134521 TGAACATGGAGTACATCGCCC 60.135 52.381 0.00 0.00 37.84 6.13
1263 1342 1.135575 CGGTGCAAGAAGAAGATTGGC 60.136 52.381 0.00 0.00 0.00 4.52
1324 1403 2.045926 AGCTTTCCAAGGCGCGAT 60.046 55.556 12.10 0.00 0.00 4.58
1369 1448 4.284860 TGCTGCTGCACGACGTCT 62.285 61.111 14.93 0.00 45.31 4.18
1373 1452 2.661866 GCTGCACGACGTCTTGGT 60.662 61.111 21.86 6.47 0.00 3.67
1452 1531 5.977635 TGGATGGCGGATAACTATATGAAG 58.022 41.667 0.00 0.00 0.00 3.02
1459 1538 6.295123 GGCGGATAACTATATGAAGAAGGTCA 60.295 42.308 0.00 0.00 0.00 4.02
1490 1569 1.079503 GCCTCAAACAAGAGTAGGCG 58.920 55.000 0.00 0.00 42.98 5.52
1499 1578 1.617018 AAGAGTAGGCGGCATGCTGA 61.617 55.000 30.67 6.49 45.43 4.26
1503 1582 3.519973 TAGGCGGCATGCTGATCCG 62.520 63.158 30.67 19.02 45.43 4.18
1522 1601 4.182315 TGCATTGCGCTGCCATCG 62.182 61.111 17.78 0.00 41.58 3.84
1523 1602 4.918129 GCATTGCGCTGCCATCGG 62.918 66.667 9.73 0.00 36.10 4.18
1582 1664 1.019805 GGCTACGGAGGTTGTCAAGC 61.020 60.000 6.66 6.66 0.00 4.01
1600 1682 3.359523 CCGGACCTGACGTCGACA 61.360 66.667 17.16 0.00 42.99 4.35
1679 1761 0.313043 GGATTTGCATGGGCTGATCG 59.687 55.000 0.00 0.00 41.91 3.69
1783 1865 7.670009 ATACTATGTACGTAGGCTCAAGTAG 57.330 40.000 22.97 0.53 0.00 2.57
1784 1866 4.820716 ACTATGTACGTAGGCTCAAGTAGG 59.179 45.833 22.97 0.00 0.00 3.18
1785 1867 3.354948 TGTACGTAGGCTCAAGTAGGA 57.645 47.619 0.00 0.00 0.00 2.94
1786 1868 3.276857 TGTACGTAGGCTCAAGTAGGAG 58.723 50.000 0.00 0.00 37.97 3.69
1787 1869 2.510928 ACGTAGGCTCAAGTAGGAGT 57.489 50.000 0.00 0.00 37.24 3.85
1788 1870 3.641434 ACGTAGGCTCAAGTAGGAGTA 57.359 47.619 0.00 0.00 37.24 2.59
1957 2377 8.924691 GCAATTTACAACTGAAGATATTTTGCA 58.075 29.630 0.00 0.00 34.81 4.08
2075 2495 2.492012 CAGAGCAACAGGCATATCCTC 58.508 52.381 0.00 0.00 45.52 3.71
2082 2502 1.054231 CAGGCATATCCTCCTGCAGA 58.946 55.000 17.39 0.00 45.52 4.26
2179 2599 2.401592 GTGTGTCGCACGCAAACA 59.598 55.556 15.47 0.00 43.40 2.83
2180 2600 1.010125 GTGTGTCGCACGCAAACAT 60.010 52.632 15.47 0.00 43.40 2.71
2182 2602 1.010125 GTGTCGCACGCAAACATGT 60.010 52.632 0.00 0.00 0.00 3.21
2183 2603 1.010238 TGTCGCACGCAAACATGTG 60.010 52.632 0.00 0.00 39.10 3.21
2184 2604 1.010125 GTCGCACGCAAACATGTGT 60.010 52.632 0.00 0.00 38.36 3.72
2188 2608 2.769564 CACGCAAACATGTGTGTCG 58.230 52.632 22.82 22.82 43.14 4.35
2189 2609 1.010125 ACGCAAACATGTGTGTCGC 60.010 52.632 23.77 9.13 37.72 5.19
2190 2610 1.010238 CGCAAACATGTGTGTCGCA 60.010 52.632 17.34 0.00 37.67 5.10
2199 2619 3.203275 GTGTGTCGCACGCATATTG 57.797 52.632 15.47 0.00 43.40 1.90
2202 2622 0.301687 GTGTCGCACGCATATTGGAG 59.698 55.000 0.00 0.00 0.00 3.86
2203 2623 1.276844 GTCGCACGCATATTGGAGC 59.723 57.895 0.00 0.00 0.00 4.70
2383 2807 9.884636 TGCAACACTAGATATAAATAACACAGT 57.115 29.630 0.00 0.00 0.00 3.55
2480 2904 7.639062 ACCTTGGGTCAAGAGATCATATTAT 57.361 36.000 9.01 0.00 43.42 1.28
2511 2935 3.222173 TCAACCACATGTGCTACCTTT 57.778 42.857 20.81 3.18 0.00 3.11
2534 2958 4.036352 GTCTCGAATTCTGCTAGTTACCG 58.964 47.826 3.52 0.00 0.00 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.044555 CCGTCTGGGTGAGTAGCGA 61.045 63.158 0.00 0.00 0.00 4.93
1 2 1.994507 CTCCGTCTGGGTGAGTAGCG 61.995 65.000 0.00 0.00 37.00 4.26
2 3 1.668101 CCTCCGTCTGGGTGAGTAGC 61.668 65.000 0.00 0.00 37.00 3.58
3 4 1.668101 GCCTCCGTCTGGGTGAGTAG 61.668 65.000 0.00 0.00 37.00 2.57
4 5 1.681327 GCCTCCGTCTGGGTGAGTA 60.681 63.158 0.00 0.00 37.00 2.59
5 6 2.997897 GCCTCCGTCTGGGTGAGT 60.998 66.667 0.00 0.00 37.00 3.41
7 8 4.631740 TGGCCTCCGTCTGGGTGA 62.632 66.667 3.32 0.00 37.00 4.02
8 9 4.087892 CTGGCCTCCGTCTGGGTG 62.088 72.222 3.32 0.00 37.00 4.61
12 13 3.465403 CTCCCTGGCCTCCGTCTG 61.465 72.222 3.32 0.00 0.00 3.51
16 17 3.350031 AAATGCTCCCTGGCCTCCG 62.350 63.158 3.32 0.00 0.00 4.63
17 18 1.755783 CAAATGCTCCCTGGCCTCC 60.756 63.158 3.32 0.00 0.00 4.30
18 19 1.755783 CCAAATGCTCCCTGGCCTC 60.756 63.158 3.32 0.00 0.00 4.70
19 20 2.097978 AACCAAATGCTCCCTGGCCT 62.098 55.000 3.32 0.00 33.19 5.19
20 21 0.324275 TAACCAAATGCTCCCTGGCC 60.324 55.000 0.00 0.00 33.19 5.36
21 22 1.780503 ATAACCAAATGCTCCCTGGC 58.219 50.000 0.00 0.00 33.19 4.85
22 23 2.431782 CCAATAACCAAATGCTCCCTGG 59.568 50.000 0.00 0.00 36.24 4.45
23 24 2.431782 CCCAATAACCAAATGCTCCCTG 59.568 50.000 0.00 0.00 0.00 4.45
24 25 2.044353 ACCCAATAACCAAATGCTCCCT 59.956 45.455 0.00 0.00 0.00 4.20
25 26 2.430694 GACCCAATAACCAAATGCTCCC 59.569 50.000 0.00 0.00 0.00 4.30
26 27 3.365472 AGACCCAATAACCAAATGCTCC 58.635 45.455 0.00 0.00 0.00 4.70
27 28 5.405935 AAAGACCCAATAACCAAATGCTC 57.594 39.130 0.00 0.00 0.00 4.26
28 29 4.222810 GGAAAGACCCAATAACCAAATGCT 59.777 41.667 0.00 0.00 0.00 3.79
29 30 4.503910 GGAAAGACCCAATAACCAAATGC 58.496 43.478 0.00 0.00 0.00 3.56
30 31 4.461081 TCGGAAAGACCCAATAACCAAATG 59.539 41.667 0.00 0.00 34.64 2.32
31 32 4.668636 TCGGAAAGACCCAATAACCAAAT 58.331 39.130 0.00 0.00 34.64 2.32
32 33 4.101645 TCGGAAAGACCCAATAACCAAA 57.898 40.909 0.00 0.00 34.64 3.28
33 34 3.791953 TCGGAAAGACCCAATAACCAA 57.208 42.857 0.00 0.00 34.64 3.67
34 35 3.616219 CATCGGAAAGACCCAATAACCA 58.384 45.455 0.00 0.00 34.64 3.67
35 36 2.949644 CCATCGGAAAGACCCAATAACC 59.050 50.000 0.00 0.00 34.64 2.85
36 37 2.949644 CCCATCGGAAAGACCCAATAAC 59.050 50.000 0.00 0.00 34.64 1.89
37 38 2.847449 TCCCATCGGAAAGACCCAATAA 59.153 45.455 0.00 0.00 34.19 1.40
38 39 2.438021 CTCCCATCGGAAAGACCCAATA 59.562 50.000 0.00 0.00 37.86 1.90
39 40 1.212935 CTCCCATCGGAAAGACCCAAT 59.787 52.381 0.00 0.00 37.86 3.16
40 41 0.618458 CTCCCATCGGAAAGACCCAA 59.382 55.000 0.00 0.00 37.86 4.12
41 42 0.252513 TCTCCCATCGGAAAGACCCA 60.253 55.000 0.00 0.00 37.86 4.51
42 43 1.132500 ATCTCCCATCGGAAAGACCC 58.868 55.000 0.00 0.00 37.86 4.46
43 44 1.202698 CCATCTCCCATCGGAAAGACC 60.203 57.143 0.00 0.00 37.86 3.85
44 45 1.486726 ACCATCTCCCATCGGAAAGAC 59.513 52.381 0.00 0.00 37.86 3.01
45 46 1.879575 ACCATCTCCCATCGGAAAGA 58.120 50.000 0.00 0.00 37.86 2.52
46 47 2.548920 GCTACCATCTCCCATCGGAAAG 60.549 54.545 0.00 0.00 37.86 2.62
47 48 1.416401 GCTACCATCTCCCATCGGAAA 59.584 52.381 0.00 0.00 37.86 3.13
48 49 1.048601 GCTACCATCTCCCATCGGAA 58.951 55.000 0.00 0.00 37.86 4.30
49 50 0.188587 AGCTACCATCTCCCATCGGA 59.811 55.000 0.00 0.00 36.45 4.55
50 51 0.605589 GAGCTACCATCTCCCATCGG 59.394 60.000 0.00 0.00 0.00 4.18
51 52 0.242286 CGAGCTACCATCTCCCATCG 59.758 60.000 0.00 0.00 0.00 3.84
52 53 0.605589 CCGAGCTACCATCTCCCATC 59.394 60.000 0.00 0.00 0.00 3.51
53 54 0.833834 CCCGAGCTACCATCTCCCAT 60.834 60.000 0.00 0.00 0.00 4.00
54 55 1.457643 CCCGAGCTACCATCTCCCA 60.458 63.158 0.00 0.00 0.00 4.37
55 56 0.543174 ATCCCGAGCTACCATCTCCC 60.543 60.000 0.00 0.00 0.00 4.30
56 57 2.217510 TATCCCGAGCTACCATCTCC 57.782 55.000 0.00 0.00 0.00 3.71
57 58 3.626930 AGATATCCCGAGCTACCATCTC 58.373 50.000 0.00 0.00 0.00 2.75
58 59 3.748645 AGATATCCCGAGCTACCATCT 57.251 47.619 0.00 0.00 0.00 2.90
59 60 3.764434 TGAAGATATCCCGAGCTACCATC 59.236 47.826 0.00 0.00 0.00 3.51
60 61 3.779444 TGAAGATATCCCGAGCTACCAT 58.221 45.455 0.00 0.00 0.00 3.55
61 62 3.238788 TGAAGATATCCCGAGCTACCA 57.761 47.619 0.00 0.00 0.00 3.25
62 63 3.306156 GGTTGAAGATATCCCGAGCTACC 60.306 52.174 0.00 0.00 0.00 3.18
63 64 3.612004 CGGTTGAAGATATCCCGAGCTAC 60.612 52.174 10.76 0.00 41.08 3.58
64 65 2.557056 CGGTTGAAGATATCCCGAGCTA 59.443 50.000 10.76 0.00 41.08 3.32
65 66 1.341531 CGGTTGAAGATATCCCGAGCT 59.658 52.381 10.76 0.00 41.08 4.09
66 67 1.605712 CCGGTTGAAGATATCCCGAGC 60.606 57.143 16.17 9.53 41.08 5.03
67 68 1.687123 ACCGGTTGAAGATATCCCGAG 59.313 52.381 16.17 10.10 41.08 4.63
68 69 1.784358 ACCGGTTGAAGATATCCCGA 58.216 50.000 16.17 0.00 41.08 5.14
69 70 2.612212 CAAACCGGTTGAAGATATCCCG 59.388 50.000 23.08 9.61 39.87 5.14
70 71 2.949644 CCAAACCGGTTGAAGATATCCC 59.050 50.000 23.08 0.00 39.87 3.85
71 72 3.881220 TCCAAACCGGTTGAAGATATCC 58.119 45.455 23.08 0.00 39.87 2.59
72 73 4.275936 CCATCCAAACCGGTTGAAGATATC 59.724 45.833 23.08 0.00 39.87 1.63
73 74 4.207165 CCATCCAAACCGGTTGAAGATAT 58.793 43.478 23.08 6.33 39.87 1.63
74 75 3.616219 CCATCCAAACCGGTTGAAGATA 58.384 45.455 23.08 4.03 39.87 1.98
75 76 2.446435 CCATCCAAACCGGTTGAAGAT 58.554 47.619 23.08 19.33 39.87 2.40
76 77 1.904287 CCATCCAAACCGGTTGAAGA 58.096 50.000 23.08 17.89 39.87 2.87
77 78 0.243636 GCCATCCAAACCGGTTGAAG 59.756 55.000 23.08 13.88 39.87 3.02
78 79 1.519751 CGCCATCCAAACCGGTTGAA 61.520 55.000 23.08 9.90 39.87 2.69
79 80 1.969064 CGCCATCCAAACCGGTTGA 60.969 57.895 23.08 15.50 39.87 3.18
80 81 2.566010 CGCCATCCAAACCGGTTG 59.434 61.111 23.08 14.70 36.94 3.77
81 82 2.675075 CCGCCATCCAAACCGGTT 60.675 61.111 15.86 15.86 36.18 4.44
83 84 3.131478 GACCGCCATCCAAACCGG 61.131 66.667 0.00 0.00 45.80 5.28
84 85 1.748879 ATGACCGCCATCCAAACCG 60.749 57.895 0.00 0.00 0.00 4.44
85 86 0.965363 ACATGACCGCCATCCAAACC 60.965 55.000 0.00 0.00 31.94 3.27
86 87 1.745232 TACATGACCGCCATCCAAAC 58.255 50.000 0.00 0.00 31.94 2.93
87 88 2.498644 TTACATGACCGCCATCCAAA 57.501 45.000 0.00 0.00 31.94 3.28
88 89 2.727123 ATTACATGACCGCCATCCAA 57.273 45.000 0.00 0.00 31.94 3.53
89 90 2.038426 CCTATTACATGACCGCCATCCA 59.962 50.000 0.00 0.00 31.94 3.41
90 91 2.301870 TCCTATTACATGACCGCCATCC 59.698 50.000 0.00 0.00 31.94 3.51
91 92 3.678056 TCCTATTACATGACCGCCATC 57.322 47.619 0.00 0.00 31.94 3.51
92 93 4.162320 CCTATCCTATTACATGACCGCCAT 59.838 45.833 0.00 0.00 35.44 4.40
93 94 3.513912 CCTATCCTATTACATGACCGCCA 59.486 47.826 0.00 0.00 0.00 5.69
94 95 3.679083 GCCTATCCTATTACATGACCGCC 60.679 52.174 0.00 0.00 0.00 6.13
95 96 3.056107 TGCCTATCCTATTACATGACCGC 60.056 47.826 0.00 0.00 0.00 5.68
96 97 4.801330 TGCCTATCCTATTACATGACCG 57.199 45.455 0.00 0.00 0.00 4.79
97 98 9.148879 ACTATATGCCTATCCTATTACATGACC 57.851 37.037 0.00 0.00 0.00 4.02
118 119 9.650714 TGGCTGAAACTAGATAGGTAAACTATA 57.349 33.333 0.00 0.00 42.43 1.31
119 120 8.548880 TGGCTGAAACTAGATAGGTAAACTAT 57.451 34.615 0.00 0.00 45.03 2.12
120 121 7.417570 GCTGGCTGAAACTAGATAGGTAAACTA 60.418 40.741 0.00 0.00 35.80 2.24
121 122 6.630638 GCTGGCTGAAACTAGATAGGTAAACT 60.631 42.308 0.00 0.00 0.00 2.66
122 123 5.524281 GCTGGCTGAAACTAGATAGGTAAAC 59.476 44.000 0.00 0.00 0.00 2.01
123 124 5.396436 GGCTGGCTGAAACTAGATAGGTAAA 60.396 44.000 0.00 0.00 0.00 2.01
124 125 4.101119 GGCTGGCTGAAACTAGATAGGTAA 59.899 45.833 0.00 0.00 0.00 2.85
125 126 3.641906 GGCTGGCTGAAACTAGATAGGTA 59.358 47.826 0.00 0.00 0.00 3.08
126 127 2.436173 GGCTGGCTGAAACTAGATAGGT 59.564 50.000 0.00 0.00 0.00 3.08
127 128 2.546795 CGGCTGGCTGAAACTAGATAGG 60.547 54.545 0.00 0.00 0.00 2.57
128 129 2.546795 CCGGCTGGCTGAAACTAGATAG 60.547 54.545 0.00 0.00 0.00 2.08
129 130 1.412710 CCGGCTGGCTGAAACTAGATA 59.587 52.381 0.00 0.00 0.00 1.98
130 131 0.179000 CCGGCTGGCTGAAACTAGAT 59.821 55.000 0.00 0.00 0.00 1.98
131 132 1.192146 ACCGGCTGGCTGAAACTAGA 61.192 55.000 12.89 0.00 39.70 2.43
132 133 0.321653 AACCGGCTGGCTGAAACTAG 60.322 55.000 12.89 0.00 39.70 2.57
133 134 0.605319 CAACCGGCTGGCTGAAACTA 60.605 55.000 12.89 0.00 39.70 2.24
134 135 1.898574 CAACCGGCTGGCTGAAACT 60.899 57.895 12.89 0.00 39.70 2.66
135 136 2.193536 ACAACCGGCTGGCTGAAAC 61.194 57.895 21.89 0.00 39.70 2.78
136 137 2.192861 CACAACCGGCTGGCTGAAA 61.193 57.895 21.89 0.00 39.70 2.69
137 138 2.594303 CACAACCGGCTGGCTGAA 60.594 61.111 21.89 0.00 39.70 3.02
138 139 4.641645 CCACAACCGGCTGGCTGA 62.642 66.667 21.89 0.00 39.70 4.26
146 147 1.529226 TGAATAACTGCCACAACCGG 58.471 50.000 0.00 0.00 0.00 5.28
147 148 2.159393 CCATGAATAACTGCCACAACCG 60.159 50.000 0.00 0.00 0.00 4.44
148 149 2.417243 GCCATGAATAACTGCCACAACC 60.417 50.000 0.00 0.00 0.00 3.77
149 150 2.493278 AGCCATGAATAACTGCCACAAC 59.507 45.455 0.00 0.00 0.00 3.32
150 151 2.806434 AGCCATGAATAACTGCCACAA 58.194 42.857 0.00 0.00 0.00 3.33
151 152 2.512692 AGCCATGAATAACTGCCACA 57.487 45.000 0.00 0.00 0.00 4.17
152 153 3.313526 CACTAGCCATGAATAACTGCCAC 59.686 47.826 0.00 0.00 0.00 5.01
153 154 3.544684 CACTAGCCATGAATAACTGCCA 58.455 45.455 0.00 0.00 0.00 4.92
154 155 2.880890 CCACTAGCCATGAATAACTGCC 59.119 50.000 0.00 0.00 0.00 4.85
155 156 2.880890 CCCACTAGCCATGAATAACTGC 59.119 50.000 0.00 0.00 0.00 4.40
156 157 3.879295 CACCCACTAGCCATGAATAACTG 59.121 47.826 0.00 0.00 0.00 3.16
157 158 3.523564 ACACCCACTAGCCATGAATAACT 59.476 43.478 0.00 0.00 0.00 2.24
158 159 3.886123 ACACCCACTAGCCATGAATAAC 58.114 45.455 0.00 0.00 0.00 1.89
159 160 4.584638 AACACCCACTAGCCATGAATAA 57.415 40.909 0.00 0.00 0.00 1.40
160 161 4.227300 AGAAACACCCACTAGCCATGAATA 59.773 41.667 0.00 0.00 0.00 1.75
161 162 3.010584 AGAAACACCCACTAGCCATGAAT 59.989 43.478 0.00 0.00 0.00 2.57
162 163 2.375174 AGAAACACCCACTAGCCATGAA 59.625 45.455 0.00 0.00 0.00 2.57
163 164 1.985159 AGAAACACCCACTAGCCATGA 59.015 47.619 0.00 0.00 0.00 3.07
164 165 2.496899 AGAAACACCCACTAGCCATG 57.503 50.000 0.00 0.00 0.00 3.66
165 166 3.914426 CTAGAAACACCCACTAGCCAT 57.086 47.619 0.00 0.00 0.00 4.40
169 170 2.188817 AGGGCTAGAAACACCCACTAG 58.811 52.381 5.31 0.00 46.88 2.57
170 171 2.337359 AGGGCTAGAAACACCCACTA 57.663 50.000 5.31 0.00 46.88 2.74
171 172 1.446016 AAGGGCTAGAAACACCCACT 58.554 50.000 5.31 0.00 46.88 4.00
172 173 2.287977 AAAGGGCTAGAAACACCCAC 57.712 50.000 5.31 0.00 46.88 4.61
173 174 2.962421 CAAAAAGGGCTAGAAACACCCA 59.038 45.455 5.31 0.00 46.88 4.51
174 175 2.299013 CCAAAAAGGGCTAGAAACACCC 59.701 50.000 0.00 0.00 44.62 4.61
175 176 3.660501 CCAAAAAGGGCTAGAAACACC 57.339 47.619 0.00 0.00 0.00 4.16
186 187 1.610522 CTCACACAGAGCCAAAAAGGG 59.389 52.381 0.00 0.00 37.59 3.95
226 227 9.103582 TGGTACCAAGGTCTCTAAAAGTAATAA 57.896 33.333 13.60 0.00 0.00 1.40
227 228 8.669055 TGGTACCAAGGTCTCTAAAAGTAATA 57.331 34.615 13.60 0.00 0.00 0.98
228 229 7.563724 TGGTACCAAGGTCTCTAAAAGTAAT 57.436 36.000 13.60 0.00 0.00 1.89
229 230 6.999705 TGGTACCAAGGTCTCTAAAAGTAA 57.000 37.500 13.60 0.00 0.00 2.24
230 231 6.499350 ACATGGTACCAAGGTCTCTAAAAGTA 59.501 38.462 20.76 0.00 0.00 2.24
231 232 5.309806 ACATGGTACCAAGGTCTCTAAAAGT 59.690 40.000 20.76 0.00 0.00 2.66
232 233 5.805728 ACATGGTACCAAGGTCTCTAAAAG 58.194 41.667 20.76 0.00 0.00 2.27
233 234 5.836024 ACATGGTACCAAGGTCTCTAAAA 57.164 39.130 20.76 0.00 0.00 1.52
234 235 5.514136 CCAACATGGTACCAAGGTCTCTAAA 60.514 44.000 20.76 0.00 31.35 1.85
235 236 4.019681 CCAACATGGTACCAAGGTCTCTAA 60.020 45.833 20.76 0.00 31.35 2.10
236 237 3.517901 CCAACATGGTACCAAGGTCTCTA 59.482 47.826 20.76 0.00 31.35 2.43
237 238 2.305927 CCAACATGGTACCAAGGTCTCT 59.694 50.000 20.76 2.90 31.35 3.10
238 239 2.711542 CCAACATGGTACCAAGGTCTC 58.288 52.381 20.76 0.00 31.35 3.36
239 240 1.271926 GCCAACATGGTACCAAGGTCT 60.272 52.381 20.76 0.00 40.46 3.85
240 241 1.173913 GCCAACATGGTACCAAGGTC 58.826 55.000 20.76 10.71 40.46 3.85
241 242 0.480690 TGCCAACATGGTACCAAGGT 59.519 50.000 20.76 17.31 40.46 3.50
242 243 0.887933 GTGCCAACATGGTACCAAGG 59.112 55.000 20.76 18.51 45.76 3.61
248 249 0.536233 AACGCAGTGCCAACATGGTA 60.536 50.000 10.11 0.00 45.00 3.25
249 250 0.536233 TAACGCAGTGCCAACATGGT 60.536 50.000 10.11 0.00 45.00 3.55
250 251 0.810648 ATAACGCAGTGCCAACATGG 59.189 50.000 10.11 0.00 45.00 3.66
251 252 2.634982 AATAACGCAGTGCCAACATG 57.365 45.000 10.11 0.00 45.00 3.21
252 253 2.556189 TCAAATAACGCAGTGCCAACAT 59.444 40.909 10.11 0.00 45.00 2.71
253 254 1.950216 TCAAATAACGCAGTGCCAACA 59.050 42.857 10.11 0.00 45.00 3.33
254 255 2.697431 TCAAATAACGCAGTGCCAAC 57.303 45.000 10.11 0.00 45.00 3.77
255 256 3.932545 AATCAAATAACGCAGTGCCAA 57.067 38.095 10.11 0.00 45.00 4.52
256 257 5.574891 ATTAATCAAATAACGCAGTGCCA 57.425 34.783 10.11 0.00 45.00 4.92
257 258 7.414436 TCTTATTAATCAAATAACGCAGTGCC 58.586 34.615 10.11 0.00 45.00 5.01
258 259 8.895845 CATCTTATTAATCAAATAACGCAGTGC 58.104 33.333 4.58 4.58 45.00 4.40
259 260 9.385902 CCATCTTATTAATCAAATAACGCAGTG 57.614 33.333 0.00 0.00 45.00 3.66
261 262 7.538678 GGCCATCTTATTAATCAAATAACGCAG 59.461 37.037 0.00 0.00 35.55 5.18
262 263 7.367285 GGCCATCTTATTAATCAAATAACGCA 58.633 34.615 0.00 0.00 35.55 5.24
263 264 6.523201 CGGCCATCTTATTAATCAAATAACGC 59.477 38.462 2.24 0.00 35.55 4.84
264 265 7.581476 ACGGCCATCTTATTAATCAAATAACG 58.419 34.615 2.24 0.00 35.55 3.18
267 268 8.673711 GCATACGGCCATCTTATTAATCAAATA 58.326 33.333 2.24 0.00 36.11 1.40
268 269 7.176515 TGCATACGGCCATCTTATTAATCAAAT 59.823 33.333 2.24 0.00 43.89 2.32
269 270 6.488344 TGCATACGGCCATCTTATTAATCAAA 59.512 34.615 2.24 0.00 43.89 2.69
270 271 6.000840 TGCATACGGCCATCTTATTAATCAA 58.999 36.000 2.24 0.00 43.89 2.57
271 272 5.555966 TGCATACGGCCATCTTATTAATCA 58.444 37.500 2.24 0.00 43.89 2.57
272 273 6.540189 AGATGCATACGGCCATCTTATTAATC 59.460 38.462 2.24 0.03 43.89 1.75
273 274 6.418101 AGATGCATACGGCCATCTTATTAAT 58.582 36.000 2.24 0.00 43.89 1.40
274 275 5.804639 AGATGCATACGGCCATCTTATTAA 58.195 37.500 2.24 0.00 43.89 1.40
275 276 5.420725 AGATGCATACGGCCATCTTATTA 57.579 39.130 2.24 0.00 43.89 0.98
276 277 4.292186 AGATGCATACGGCCATCTTATT 57.708 40.909 2.24 0.00 43.89 1.40
277 278 3.988976 AGATGCATACGGCCATCTTAT 57.011 42.857 2.24 0.00 43.89 1.73
278 279 3.769739 AAGATGCATACGGCCATCTTA 57.230 42.857 11.07 0.00 42.85 2.10
279 280 2.645838 AAGATGCATACGGCCATCTT 57.354 45.000 2.24 5.69 41.39 2.40
280 281 3.988976 ATAAGATGCATACGGCCATCT 57.011 42.857 2.24 0.00 43.89 2.90
281 282 4.093998 CAGAATAAGATGCATACGGCCATC 59.906 45.833 2.24 0.00 43.89 3.51
282 283 4.005650 CAGAATAAGATGCATACGGCCAT 58.994 43.478 2.24 0.00 43.89 4.40
283 284 3.070878 TCAGAATAAGATGCATACGGCCA 59.929 43.478 2.24 0.00 43.89 5.36
284 285 3.664107 TCAGAATAAGATGCATACGGCC 58.336 45.455 0.00 0.00 43.89 6.13
285 286 5.213913 CATCAGAATAAGATGCATACGGC 57.786 43.478 0.00 0.00 45.13 5.68
293 294 3.752222 GGCCTCTGCATCAGAATAAGATG 59.248 47.826 0.00 0.00 40.18 2.90
294 295 3.556633 CGGCCTCTGCATCAGAATAAGAT 60.557 47.826 0.00 0.00 40.18 2.40
295 296 2.224137 CGGCCTCTGCATCAGAATAAGA 60.224 50.000 0.00 0.00 40.18 2.10
296 297 2.141517 CGGCCTCTGCATCAGAATAAG 58.858 52.381 0.00 0.00 40.18 1.73
297 298 1.202687 CCGGCCTCTGCATCAGAATAA 60.203 52.381 0.00 0.00 40.18 1.40
298 299 0.394192 CCGGCCTCTGCATCAGAATA 59.606 55.000 0.00 0.00 40.18 1.75
299 300 1.147824 CCGGCCTCTGCATCAGAAT 59.852 57.895 0.00 0.00 40.18 2.40
300 301 2.586245 CCGGCCTCTGCATCAGAA 59.414 61.111 0.00 0.00 40.18 3.02
301 302 3.473647 CCCGGCCTCTGCATCAGA 61.474 66.667 0.00 0.00 38.25 3.27
302 303 4.559063 CCCCGGCCTCTGCATCAG 62.559 72.222 0.00 0.00 40.13 2.90
304 305 2.631012 AAATCCCCGGCCTCTGCATC 62.631 60.000 0.00 0.00 40.13 3.91
305 306 2.228841 AAAATCCCCGGCCTCTGCAT 62.229 55.000 0.00 0.00 40.13 3.96
306 307 2.439553 AAAAATCCCCGGCCTCTGCA 62.440 55.000 0.00 0.00 40.13 4.41
307 308 1.667154 GAAAAATCCCCGGCCTCTGC 61.667 60.000 0.00 0.00 0.00 4.26
308 309 1.037579 GGAAAAATCCCCGGCCTCTG 61.038 60.000 0.00 0.00 0.00 3.35
309 310 1.306633 GGAAAAATCCCCGGCCTCT 59.693 57.895 0.00 0.00 0.00 3.69
310 311 1.756950 GGGAAAAATCCCCGGCCTC 60.757 63.158 0.00 0.00 44.18 4.70
311 312 2.362963 GGGAAAAATCCCCGGCCT 59.637 61.111 0.00 0.00 44.18 5.19
339 340 6.372937 TCCCTCGCAAAAACAAAAATCTTTTT 59.627 30.769 0.00 0.00 40.75 1.94
340 341 5.877564 TCCCTCGCAAAAACAAAAATCTTTT 59.122 32.000 0.00 0.00 0.00 2.27
341 342 5.423886 TCCCTCGCAAAAACAAAAATCTTT 58.576 33.333 0.00 0.00 0.00 2.52
342 343 5.017294 TCCCTCGCAAAAACAAAAATCTT 57.983 34.783 0.00 0.00 0.00 2.40
343 344 4.340950 TCTCCCTCGCAAAAACAAAAATCT 59.659 37.500 0.00 0.00 0.00 2.40
344 345 4.444388 GTCTCCCTCGCAAAAACAAAAATC 59.556 41.667 0.00 0.00 0.00 2.17
345 346 4.368315 GTCTCCCTCGCAAAAACAAAAAT 58.632 39.130 0.00 0.00 0.00 1.82
346 347 3.429684 GGTCTCCCTCGCAAAAACAAAAA 60.430 43.478 0.00 0.00 0.00 1.94
347 348 2.100087 GGTCTCCCTCGCAAAAACAAAA 59.900 45.455 0.00 0.00 0.00 2.44
348 349 1.679153 GGTCTCCCTCGCAAAAACAAA 59.321 47.619 0.00 0.00 0.00 2.83
349 350 1.314730 GGTCTCCCTCGCAAAAACAA 58.685 50.000 0.00 0.00 0.00 2.83
350 351 0.181587 TGGTCTCCCTCGCAAAAACA 59.818 50.000 0.00 0.00 0.00 2.83
351 352 0.875059 CTGGTCTCCCTCGCAAAAAC 59.125 55.000 0.00 0.00 0.00 2.43
352 353 0.472471 ACTGGTCTCCCTCGCAAAAA 59.528 50.000 0.00 0.00 0.00 1.94
353 354 1.344065 TACTGGTCTCCCTCGCAAAA 58.656 50.000 0.00 0.00 0.00 2.44
354 355 1.568504 ATACTGGTCTCCCTCGCAAA 58.431 50.000 0.00 0.00 0.00 3.68
355 356 1.480954 GAATACTGGTCTCCCTCGCAA 59.519 52.381 0.00 0.00 0.00 4.85
356 357 1.112113 GAATACTGGTCTCCCTCGCA 58.888 55.000 0.00 0.00 0.00 5.10
357 358 1.404843 AGAATACTGGTCTCCCTCGC 58.595 55.000 0.00 0.00 0.00 5.03
358 359 4.145807 ACATAGAATACTGGTCTCCCTCG 58.854 47.826 0.00 0.00 0.00 4.63
359 360 6.778559 AGTAACATAGAATACTGGTCTCCCTC 59.221 42.308 0.00 0.00 31.35 4.30
360 361 6.684538 AGTAACATAGAATACTGGTCTCCCT 58.315 40.000 0.00 0.00 31.35 4.20
361 362 6.980416 AGTAACATAGAATACTGGTCTCCC 57.020 41.667 0.00 0.00 31.35 4.30
362 363 7.583230 CGTAGTAACATAGAATACTGGTCTCC 58.417 42.308 0.00 0.00 34.37 3.71
363 364 7.076983 GCGTAGTAACATAGAATACTGGTCTC 58.923 42.308 0.00 0.00 34.37 3.36
364 365 6.544931 TGCGTAGTAACATAGAATACTGGTCT 59.455 38.462 0.00 0.00 34.37 3.85
365 366 6.732154 TGCGTAGTAACATAGAATACTGGTC 58.268 40.000 0.00 0.00 34.37 4.02
366 367 6.704289 TGCGTAGTAACATAGAATACTGGT 57.296 37.500 0.00 0.00 34.37 4.00
367 368 9.856488 ATAATGCGTAGTAACATAGAATACTGG 57.144 33.333 0.00 0.00 34.37 4.00
369 370 9.856488 CCATAATGCGTAGTAACATAGAATACT 57.144 33.333 0.00 0.00 36.40 2.12
370 371 9.850628 TCCATAATGCGTAGTAACATAGAATAC 57.149 33.333 0.00 0.00 0.00 1.89
372 373 9.371136 CATCCATAATGCGTAGTAACATAGAAT 57.629 33.333 0.00 0.00 0.00 2.40
373 374 8.364894 ACATCCATAATGCGTAGTAACATAGAA 58.635 33.333 0.00 0.00 39.12 2.10
374 375 7.892609 ACATCCATAATGCGTAGTAACATAGA 58.107 34.615 0.00 0.00 39.12 1.98
375 376 9.290483 CTACATCCATAATGCGTAGTAACATAG 57.710 37.037 0.00 0.00 39.12 2.23
376 377 8.799367 ACTACATCCATAATGCGTAGTAACATA 58.201 33.333 0.00 0.00 39.12 2.29
377 378 7.667557 ACTACATCCATAATGCGTAGTAACAT 58.332 34.615 0.00 0.00 39.12 2.71
378 379 7.046292 ACTACATCCATAATGCGTAGTAACA 57.954 36.000 0.00 0.00 39.12 2.41
379 380 9.286946 GATACTACATCCATAATGCGTAGTAAC 57.713 37.037 10.70 5.90 39.12 2.50
380 381 9.016438 TGATACTACATCCATAATGCGTAGTAA 57.984 33.333 10.70 0.00 39.12 2.24
381 382 8.570068 TGATACTACATCCATAATGCGTAGTA 57.430 34.615 9.44 9.44 39.12 1.82
382 383 7.462571 TGATACTACATCCATAATGCGTAGT 57.537 36.000 0.00 0.00 39.12 2.73
383 384 9.452065 GTATGATACTACATCCATAATGCGTAG 57.548 37.037 0.00 0.00 39.12 3.51
384 385 8.962679 TGTATGATACTACATCCATAATGCGTA 58.037 33.333 4.03 0.00 39.12 4.42
385 386 7.759886 GTGTATGATACTACATCCATAATGCGT 59.240 37.037 4.03 0.00 39.12 5.24
386 387 7.976175 AGTGTATGATACTACATCCATAATGCG 59.024 37.037 4.03 0.00 39.12 4.73
423 424 9.819267 GGGGAGTATCATATACTAGTATTTTGC 57.181 37.037 20.21 7.21 36.25 3.68
429 430 8.481314 CGTAGTGGGGAGTATCATATACTAGTA 58.519 40.741 4.77 4.77 36.25 1.82
430 431 7.181665 TCGTAGTGGGGAGTATCATATACTAGT 59.818 40.741 0.00 0.00 36.25 2.57
431 432 7.563020 TCGTAGTGGGGAGTATCATATACTAG 58.437 42.308 0.00 0.00 36.25 2.57
432 433 7.500629 TCGTAGTGGGGAGTATCATATACTA 57.499 40.000 0.00 0.00 36.25 1.82
433 434 6.384342 TCGTAGTGGGGAGTATCATATACT 57.616 41.667 0.00 0.00 36.25 2.12
434 435 7.642082 ATTCGTAGTGGGGAGTATCATATAC 57.358 40.000 0.00 0.00 36.25 1.47
435 436 9.182214 GTAATTCGTAGTGGGGAGTATCATATA 57.818 37.037 0.00 0.00 36.25 0.86
436 437 7.123847 GGTAATTCGTAGTGGGGAGTATCATAT 59.876 40.741 0.00 0.00 36.25 1.78
437 438 6.435277 GGTAATTCGTAGTGGGGAGTATCATA 59.565 42.308 0.00 0.00 36.25 2.15
438 439 5.245526 GGTAATTCGTAGTGGGGAGTATCAT 59.754 44.000 0.00 0.00 36.25 2.45
439 440 4.586001 GGTAATTCGTAGTGGGGAGTATCA 59.414 45.833 0.00 0.00 36.25 2.15
440 441 4.831710 AGGTAATTCGTAGTGGGGAGTATC 59.168 45.833 0.00 0.00 0.00 2.24
441 442 4.812653 AGGTAATTCGTAGTGGGGAGTAT 58.187 43.478 0.00 0.00 0.00 2.12
442 443 4.255510 AGGTAATTCGTAGTGGGGAGTA 57.744 45.455 0.00 0.00 0.00 2.59
443 444 3.111741 AGGTAATTCGTAGTGGGGAGT 57.888 47.619 0.00 0.00 0.00 3.85
444 445 5.303589 TGAATAGGTAATTCGTAGTGGGGAG 59.696 44.000 0.00 0.00 46.03 4.30
445 446 5.210430 TGAATAGGTAATTCGTAGTGGGGA 58.790 41.667 0.00 0.00 46.03 4.81
446 447 5.540400 TGAATAGGTAATTCGTAGTGGGG 57.460 43.478 0.00 0.00 46.03 4.96
447 448 6.994221 AGATGAATAGGTAATTCGTAGTGGG 58.006 40.000 0.00 0.00 46.03 4.61
448 449 9.976511 TTTAGATGAATAGGTAATTCGTAGTGG 57.023 33.333 0.00 0.00 46.03 4.00
513 519 0.391130 TGTGCTACTCCACGATTGCC 60.391 55.000 0.00 0.00 38.55 4.52
514 520 1.656652 ATGTGCTACTCCACGATTGC 58.343 50.000 0.00 0.00 38.55 3.56
542 548 0.870307 CGAATCTAGGAACCCGCGTG 60.870 60.000 4.92 0.00 0.00 5.34
544 550 0.594284 GACGAATCTAGGAACCCGCG 60.594 60.000 0.00 0.00 0.00 6.46
548 554 3.288964 TGAGGAGACGAATCTAGGAACC 58.711 50.000 0.00 0.00 34.34 3.62
553 559 5.521906 TGGAATTGAGGAGACGAATCTAG 57.478 43.478 0.00 0.00 34.34 2.43
574 580 3.103738 GCATGCTCAAATCTAAACGCTG 58.896 45.455 11.37 0.00 0.00 5.18
609 616 8.897752 GGCATTTGAAGAATCAGTAGACTAAAT 58.102 33.333 0.00 0.00 36.78 1.40
613 620 5.879223 CAGGCATTTGAAGAATCAGTAGACT 59.121 40.000 0.00 0.00 36.78 3.24
664 671 5.605564 TTGTCAATTTGTGATACGACCTG 57.394 39.130 0.00 0.00 38.90 4.00
671 678 5.163903 CGTGGTCGATTGTCAATTTGTGATA 60.164 40.000 0.00 0.00 37.69 2.15
699 706 2.100197 TCCCCTCTTCATCTACACGTG 58.900 52.381 15.48 15.48 0.00 4.49
700 707 2.526888 TCCCCTCTTCATCTACACGT 57.473 50.000 0.00 0.00 0.00 4.49
702 709 5.068723 TCGTATTTCCCCTCTTCATCTACAC 59.931 44.000 0.00 0.00 0.00 2.90
704 711 5.786264 TCGTATTTCCCCTCTTCATCTAC 57.214 43.478 0.00 0.00 0.00 2.59
712 751 2.904434 ACACTGTTCGTATTTCCCCTCT 59.096 45.455 0.00 0.00 0.00 3.69
714 753 4.895668 TTACACTGTTCGTATTTCCCCT 57.104 40.909 0.00 0.00 0.00 4.79
747 786 5.105187 TCCGTGTGATCTGAATGAAGATTCT 60.105 40.000 0.00 0.00 39.10 2.40
831 872 3.247411 CGATCGCCTGCATTAATGTTGTA 59.753 43.478 16.61 1.35 0.00 2.41
853 894 7.948278 AAGTAATTATTCTGGCAGATACGAC 57.052 36.000 19.50 11.59 0.00 4.34
874 916 7.630242 ATCATTCACGTGATAATTGGAAAGT 57.370 32.000 20.80 0.00 37.08 2.66
893 935 8.498054 AATCGAATGACAAGAGTACAATCATT 57.502 30.769 0.00 2.99 41.51 2.57
940 982 1.842007 CCAGATGAGGGGATGGTGG 59.158 63.158 0.00 0.00 0.00 4.61
941 983 1.150081 GCCAGATGAGGGGATGGTG 59.850 63.158 0.00 0.00 35.17 4.17
942 984 0.920763 TTGCCAGATGAGGGGATGGT 60.921 55.000 0.00 0.00 35.17 3.55
982 1024 3.679389 CCATGCATGTAGGTAGGAATCC 58.321 50.000 24.58 0.00 0.00 3.01
1036 1115 4.760047 CTTCCGGGGTGAGCCGTG 62.760 72.222 0.00 0.00 34.97 4.94
1452 1531 1.354040 CGATGCAGTCACTGACCTTC 58.646 55.000 9.70 0.00 32.44 3.46
1459 1538 0.035317 TTTGAGGCGATGCAGTCACT 59.965 50.000 0.00 0.00 0.00 3.41
1490 1569 3.962421 GCAGCGGATCAGCATGCC 61.962 66.667 20.15 0.00 40.15 4.40
1551 1633 1.302511 CGTAGCCCAACCTTGCAGT 60.303 57.895 0.00 0.00 0.00 4.40
1582 1664 4.112341 GTCGACGTCAGGTCCGGG 62.112 72.222 17.16 0.00 42.99 5.73
1679 1761 1.706287 GCGAGGAAAATGCGGACCTC 61.706 60.000 0.00 0.00 43.58 3.85
1876 2296 5.816919 TGGTCGATTTCTTCTTGTTTCAAC 58.183 37.500 0.00 0.00 0.00 3.18
1878 2298 5.588648 ACTTGGTCGATTTCTTCTTGTTTCA 59.411 36.000 0.00 0.00 0.00 2.69
1957 2377 2.601905 AGAAGTGGCCTGCAAATTCTT 58.398 42.857 3.32 0.00 0.00 2.52
2075 2495 2.236382 GCTCGCGAGAATCTGCAGG 61.236 63.158 38.74 10.41 41.32 4.85
2080 2500 1.067821 CCTTAAGGCTCGCGAGAATCT 59.932 52.381 38.74 26.58 41.32 2.40
2082 2502 1.112113 TCCTTAAGGCTCGCGAGAAT 58.888 50.000 38.74 24.16 41.32 2.40
2182 2602 0.390472 TCCAATATGCGTGCGACACA 60.390 50.000 9.95 0.00 33.40 3.72
2183 2603 0.301687 CTCCAATATGCGTGCGACAC 59.698 55.000 0.00 0.00 0.00 3.67
2184 2604 1.428370 GCTCCAATATGCGTGCGACA 61.428 55.000 0.00 0.00 0.00 4.35
2185 2605 1.276844 GCTCCAATATGCGTGCGAC 59.723 57.895 0.00 0.00 0.00 5.19
2186 2606 1.887242 GGCTCCAATATGCGTGCGA 60.887 57.895 0.00 0.00 0.00 5.10
2187 2607 0.599991 TAGGCTCCAATATGCGTGCG 60.600 55.000 0.00 0.00 0.00 5.34
2188 2608 1.151668 CTAGGCTCCAATATGCGTGC 58.848 55.000 0.00 0.00 0.00 5.34
2189 2609 2.820059 TCTAGGCTCCAATATGCGTG 57.180 50.000 0.00 0.00 0.00 5.34
2190 2610 2.700897 ACTTCTAGGCTCCAATATGCGT 59.299 45.455 0.00 0.00 0.00 5.24
2192 2612 5.105716 TCGATACTTCTAGGCTCCAATATGC 60.106 44.000 0.00 0.00 0.00 3.14
2193 2613 6.516739 TCGATACTTCTAGGCTCCAATATG 57.483 41.667 0.00 0.00 0.00 1.78
2194 2614 7.726033 AATCGATACTTCTAGGCTCCAATAT 57.274 36.000 0.00 0.00 0.00 1.28
2195 2615 8.824756 ATAATCGATACTTCTAGGCTCCAATA 57.175 34.615 0.00 0.00 0.00 1.90
2197 2617 7.540474 AATAATCGATACTTCTAGGCTCCAA 57.460 36.000 0.00 0.00 0.00 3.53
2199 2619 8.688151 ACATAATAATCGATACTTCTAGGCTCC 58.312 37.037 0.00 0.00 0.00 4.70
2295 2715 7.857734 AAAAGGTTTGATTTACCACCAAAAG 57.142 32.000 0.00 0.00 38.16 2.27
2480 2904 5.925397 GCACATGTGGTTGATTGTGAATTTA 59.075 36.000 26.55 0.00 41.50 1.40
2493 2917 2.884639 GACAAAGGTAGCACATGTGGTT 59.115 45.455 33.18 15.31 41.96 3.67
2499 2923 3.678056 TTCGAGACAAAGGTAGCACAT 57.322 42.857 0.00 0.00 0.00 3.21
2511 2935 4.438336 CGGTAACTAGCAGAATTCGAGACA 60.438 45.833 0.00 0.00 0.00 3.41
2534 2958 8.246180 CCATATTTTCCCACATTATCTGTATGC 58.754 37.037 0.00 0.00 35.91 3.14


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.