Multiple sequence alignment - TraesCS7A01G560900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G560900 chr7A 100.000 2591 0 0 1 2591 732377707 732380297 0.000000e+00 4785
1 TraesCS7A01G560900 chr7A 94.102 1475 40 14 578 2025 67534531 67535985 0.000000e+00 2198
2 TraesCS7A01G560900 chr7A 89.892 277 28 0 1 277 44434275 44433999 8.820000e-95 357
3 TraesCS7A01G560900 chr7A 96.907 97 3 0 276 372 73807173 73807269 2.060000e-36 163
4 TraesCS7A01G560900 chr7A 79.670 182 25 4 405 578 44433944 44433767 1.260000e-23 121
5 TraesCS7A01G560900 chr1A 98.562 2017 19 5 578 2591 2682497 2684506 0.000000e+00 3555
6 TraesCS7A01G560900 chr2A 97.854 2004 22 8 579 2580 776203890 776201906 0.000000e+00 3443
7 TraesCS7A01G560900 chr2A 93.686 1473 46 14 579 2025 705927065 705928516 0.000000e+00 2161
8 TraesCS7A01G560900 chr3A 96.217 2009 38 8 579 2580 743122518 743120541 0.000000e+00 3254
9 TraesCS7A01G560900 chr3A 95.872 533 13 7 1677 2202 708908856 708909386 0.000000e+00 854
10 TraesCS7A01G560900 chr3A 98.026 304 6 0 2277 2580 708909385 708909688 1.770000e-146 529
11 TraesCS7A01G560900 chr3A 91.367 278 23 1 1 277 94114326 94114049 1.880000e-101 379
12 TraesCS7A01G560900 chr3A 89.451 237 4 5 2043 2279 733098960 733099175 1.960000e-71 279
13 TraesCS7A01G560900 chr4B 93.199 2029 51 17 584 2580 486091678 486089705 0.000000e+00 2902
14 TraesCS7A01G560900 chr4B 93.051 2029 54 15 584 2580 486046055 486048028 0.000000e+00 2885
15 TraesCS7A01G560900 chr4B 92.656 2029 55 18 584 2580 364446314 364444348 0.000000e+00 2835
16 TraesCS7A01G560900 chr5A 95.611 1800 33 10 578 2370 551446347 551444587 0.000000e+00 2844
17 TraesCS7A01G560900 chr5A 94.086 1471 44 17 579 2025 501883893 501885344 0.000000e+00 2194
18 TraesCS7A01G560900 chr5A 93.031 1478 46 19 575 2025 666943213 666941766 0.000000e+00 2106
19 TraesCS7A01G560900 chr1B 92.558 2029 58 19 584 2580 446982875 446980908 0.000000e+00 2824
20 TraesCS7A01G560900 chr1B 91.650 2024 76 27 578 2580 652247092 652249043 0.000000e+00 2715
21 TraesCS7A01G560900 chr6A 95.782 1470 25 10 579 2036 25548635 25547191 0.000000e+00 2337
22 TraesCS7A01G560900 chr6A 95.672 670 11 2 1911 2580 25547190 25546539 0.000000e+00 1061
23 TraesCS7A01G560900 chr6A 98.813 337 4 0 2229 2565 16982117 16981781 3.690000e-168 601
24 TraesCS7A01G560900 chr6A 92.188 320 11 1 579 898 16984031 16983726 8.510000e-120 440
25 TraesCS7A01G560900 chr6A 90.253 277 27 0 1 277 437498994 437499270 1.900000e-96 363
26 TraesCS7A01G560900 chr6A 95.960 99 4 0 276 374 596589349 596589447 7.420000e-36 161
27 TraesCS7A01G560900 chr6A 80.000 185 26 3 402 579 437499322 437499502 2.710000e-25 126
28 TraesCS7A01G560900 chr4A 93.605 1470 50 17 579 2025 607375340 607373892 0.000000e+00 2154
29 TraesCS7A01G560900 chr7D 92.512 1469 50 19 578 2025 71219438 71220867 0.000000e+00 2049
30 TraesCS7A01G560900 chr7D 88.103 1471 87 34 591 2025 83328001 83329419 0.000000e+00 1666
31 TraesCS7A01G560900 chr7D 89.892 277 26 1 1 277 2017627 2017901 3.170000e-94 355
32 TraesCS7A01G560900 chr7D 79.891 184 26 3 402 578 2017954 2018133 9.740000e-25 124
33 TraesCS7A01G560900 chr7D 79.891 184 26 3 402 578 87754449 87754628 9.740000e-25 124
34 TraesCS7A01G560900 chrUn 93.865 1141 28 11 1448 2580 418584900 418583794 0.000000e+00 1681
35 TraesCS7A01G560900 chrUn 90.975 277 25 0 1 277 71653566 71653290 8.760000e-100 374
36 TraesCS7A01G560900 chr2B 87.155 1487 108 33 579 2025 63820262 63818819 0.000000e+00 1611
37 TraesCS7A01G560900 chr2B 95.050 101 5 0 273 373 63293088 63293188 2.670000e-35 159
38 TraesCS7A01G560900 chr2B 91.667 108 9 0 275 382 382599095 382598988 1.610000e-32 150
39 TraesCS7A01G560900 chr3B 90.681 279 24 2 1 277 753943009 753943287 1.130000e-98 370
40 TraesCS7A01G560900 chr7B 90.647 278 25 1 1 277 568782206 568781929 4.070000e-98 368
41 TraesCS7A01G560900 chr7B 94.175 103 6 0 275 377 588875014 588874912 9.600000e-35 158
42 TraesCS7A01G560900 chr3D 89.892 277 26 1 1 277 289812374 289812648 3.170000e-94 355
43 TraesCS7A01G560900 chr3D 79.891 184 26 3 402 578 289812700 289812879 9.740000e-25 124
44 TraesCS7A01G560900 chr1D 89.892 277 26 1 1 277 12307878 12307604 3.170000e-94 355
45 TraesCS7A01G560900 chr1D 80.663 181 24 3 405 578 12307549 12307373 2.090000e-26 130
46 TraesCS7A01G560900 chr4D 95.238 105 5 0 276 380 498045874 498045978 1.590000e-37 167
47 TraesCS7A01G560900 chr4D 94.231 104 6 0 273 376 13198279 13198382 2.670000e-35 159
48 TraesCS7A01G560900 chr5B 92.381 105 8 0 275 379 295217361 295217257 1.610000e-32 150
49 TraesCS7A01G560900 chr6D 90.991 111 9 1 268 378 141925002 141924893 5.780000e-32 148


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G560900 chr7A 732377707 732380297 2590 False 4785.0 4785 100.0000 1 2591 1 chr7A.!!$F3 2590
1 TraesCS7A01G560900 chr7A 67534531 67535985 1454 False 2198.0 2198 94.1020 578 2025 1 chr7A.!!$F1 1447
2 TraesCS7A01G560900 chr7A 44433767 44434275 508 True 239.0 357 84.7810 1 578 2 chr7A.!!$R1 577
3 TraesCS7A01G560900 chr1A 2682497 2684506 2009 False 3555.0 3555 98.5620 578 2591 1 chr1A.!!$F1 2013
4 TraesCS7A01G560900 chr2A 776201906 776203890 1984 True 3443.0 3443 97.8540 579 2580 1 chr2A.!!$R1 2001
5 TraesCS7A01G560900 chr2A 705927065 705928516 1451 False 2161.0 2161 93.6860 579 2025 1 chr2A.!!$F1 1446
6 TraesCS7A01G560900 chr3A 743120541 743122518 1977 True 3254.0 3254 96.2170 579 2580 1 chr3A.!!$R2 2001
7 TraesCS7A01G560900 chr3A 708908856 708909688 832 False 691.5 854 96.9490 1677 2580 2 chr3A.!!$F2 903
8 TraesCS7A01G560900 chr4B 486089705 486091678 1973 True 2902.0 2902 93.1990 584 2580 1 chr4B.!!$R2 1996
9 TraesCS7A01G560900 chr4B 486046055 486048028 1973 False 2885.0 2885 93.0510 584 2580 1 chr4B.!!$F1 1996
10 TraesCS7A01G560900 chr4B 364444348 364446314 1966 True 2835.0 2835 92.6560 584 2580 1 chr4B.!!$R1 1996
11 TraesCS7A01G560900 chr5A 551444587 551446347 1760 True 2844.0 2844 95.6110 578 2370 1 chr5A.!!$R1 1792
12 TraesCS7A01G560900 chr5A 501883893 501885344 1451 False 2194.0 2194 94.0860 579 2025 1 chr5A.!!$F1 1446
13 TraesCS7A01G560900 chr5A 666941766 666943213 1447 True 2106.0 2106 93.0310 575 2025 1 chr5A.!!$R2 1450
14 TraesCS7A01G560900 chr1B 446980908 446982875 1967 True 2824.0 2824 92.5580 584 2580 1 chr1B.!!$R1 1996
15 TraesCS7A01G560900 chr1B 652247092 652249043 1951 False 2715.0 2715 91.6500 578 2580 1 chr1B.!!$F1 2002
16 TraesCS7A01G560900 chr6A 25546539 25548635 2096 True 1699.0 2337 95.7270 579 2580 2 chr6A.!!$R2 2001
17 TraesCS7A01G560900 chr6A 16981781 16984031 2250 True 520.5 601 95.5005 579 2565 2 chr6A.!!$R1 1986
18 TraesCS7A01G560900 chr6A 437498994 437499502 508 False 244.5 363 85.1265 1 579 2 chr6A.!!$F2 578
19 TraesCS7A01G560900 chr4A 607373892 607375340 1448 True 2154.0 2154 93.6050 579 2025 1 chr4A.!!$R1 1446
20 TraesCS7A01G560900 chr7D 71219438 71220867 1429 False 2049.0 2049 92.5120 578 2025 1 chr7D.!!$F1 1447
21 TraesCS7A01G560900 chr7D 83328001 83329419 1418 False 1666.0 1666 88.1030 591 2025 1 chr7D.!!$F2 1434
22 TraesCS7A01G560900 chr7D 2017627 2018133 506 False 239.5 355 84.8915 1 578 2 chr7D.!!$F4 577
23 TraesCS7A01G560900 chrUn 418583794 418584900 1106 True 1681.0 1681 93.8650 1448 2580 1 chrUn.!!$R2 1132
24 TraesCS7A01G560900 chr2B 63818819 63820262 1443 True 1611.0 1611 87.1550 579 2025 1 chr2B.!!$R1 1446
25 TraesCS7A01G560900 chr3D 289812374 289812879 505 False 239.5 355 84.8915 1 578 2 chr3D.!!$F1 577
26 TraesCS7A01G560900 chr1D 12307373 12307878 505 True 242.5 355 85.2775 1 578 2 chr1D.!!$R1 577

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
285 286 0.030369 GTACGCACATACTCCCTCCG 59.97 60.0 0.0 0.0 0.0 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1897 2521 1.290203 ATCGATGTCAATGACCGTGC 58.71 50.0 11.24 0.0 0.0 5.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 9.877178 GGACCAGGTTATAAATAGATCATACTG 57.123 37.037 0.00 0.00 0.00 2.74
47 48 8.620416 TCATACTGATTGGGTTTTATTCATTCG 58.380 33.333 0.00 0.00 0.00 3.34
63 64 4.607955 TCATTCGGTCATACAGATTCGAC 58.392 43.478 0.00 0.00 35.56 4.20
64 65 4.338400 TCATTCGGTCATACAGATTCGACT 59.662 41.667 0.00 0.00 35.56 4.18
108 109 2.486796 GAGGGCTCCAGTTTGATGC 58.513 57.895 0.00 0.00 0.00 3.91
109 110 0.322816 GAGGGCTCCAGTTTGATGCA 60.323 55.000 0.00 0.00 0.00 3.96
110 111 0.610232 AGGGCTCCAGTTTGATGCAC 60.610 55.000 0.00 0.00 0.00 4.57
111 112 0.610232 GGGCTCCAGTTTGATGCACT 60.610 55.000 0.00 0.00 0.00 4.40
112 113 0.524862 GGCTCCAGTTTGATGCACTG 59.475 55.000 0.00 0.00 41.29 3.66
113 114 1.242076 GCTCCAGTTTGATGCACTGT 58.758 50.000 0.00 0.00 40.19 3.55
114 115 1.610522 GCTCCAGTTTGATGCACTGTT 59.389 47.619 0.00 0.00 40.19 3.16
115 116 2.813754 GCTCCAGTTTGATGCACTGTTA 59.186 45.455 0.00 0.00 40.19 2.41
116 117 3.253188 GCTCCAGTTTGATGCACTGTTAA 59.747 43.478 0.00 0.00 40.19 2.01
117 118 4.261572 GCTCCAGTTTGATGCACTGTTAAA 60.262 41.667 0.00 0.00 40.19 1.52
118 119 5.735922 GCTCCAGTTTGATGCACTGTTAAAA 60.736 40.000 0.00 0.00 40.19 1.52
119 120 6.403866 TCCAGTTTGATGCACTGTTAAAAT 57.596 33.333 0.00 0.00 40.19 1.82
120 121 6.815089 TCCAGTTTGATGCACTGTTAAAATT 58.185 32.000 0.00 0.00 40.19 1.82
121 122 6.922957 TCCAGTTTGATGCACTGTTAAAATTC 59.077 34.615 0.00 0.00 40.19 2.17
122 123 6.700960 CCAGTTTGATGCACTGTTAAAATTCA 59.299 34.615 0.00 0.00 40.19 2.57
123 124 7.385752 CCAGTTTGATGCACTGTTAAAATTCAT 59.614 33.333 0.00 0.00 40.19 2.57
124 125 8.218441 CAGTTTGATGCACTGTTAAAATTCATG 58.782 33.333 0.00 0.00 37.47 3.07
125 126 7.927629 AGTTTGATGCACTGTTAAAATTCATGT 59.072 29.630 0.00 0.00 0.00 3.21
126 127 8.550376 GTTTGATGCACTGTTAAAATTCATGTT 58.450 29.630 0.00 0.00 0.00 2.71
127 128 7.640616 TGATGCACTGTTAAAATTCATGTTG 57.359 32.000 0.00 0.00 0.00 3.33
128 129 7.432059 TGATGCACTGTTAAAATTCATGTTGA 58.568 30.769 0.00 0.00 0.00 3.18
129 130 7.924947 TGATGCACTGTTAAAATTCATGTTGAA 59.075 29.630 0.00 0.00 41.09 2.69
130 131 7.697352 TGCACTGTTAAAATTCATGTTGAAG 57.303 32.000 0.00 0.00 40.05 3.02
131 132 7.264221 TGCACTGTTAAAATTCATGTTGAAGT 58.736 30.769 0.00 0.00 40.05 3.01
132 133 7.434897 TGCACTGTTAAAATTCATGTTGAAGTC 59.565 33.333 0.00 0.00 40.05 3.01
133 134 7.434897 GCACTGTTAAAATTCATGTTGAAGTCA 59.565 33.333 0.00 0.00 40.05 3.41
134 135 9.467258 CACTGTTAAAATTCATGTTGAAGTCAT 57.533 29.630 0.00 0.00 40.05 3.06
137 138 9.624697 TGTTAAAATTCATGTTGAAGTCATAGC 57.375 29.630 0.00 0.00 40.05 2.97
138 139 9.624697 GTTAAAATTCATGTTGAAGTCATAGCA 57.375 29.630 0.00 0.00 40.05 3.49
140 141 8.697846 AAAATTCATGTTGAAGTCATAGCATG 57.302 30.769 11.54 11.54 40.05 4.06
141 142 7.400599 AATTCATGTTGAAGTCATAGCATGT 57.599 32.000 14.79 0.00 40.05 3.21
142 143 8.510243 AATTCATGTTGAAGTCATAGCATGTA 57.490 30.769 14.79 9.71 40.05 2.29
143 144 7.543947 TTCATGTTGAAGTCATAGCATGTAG 57.456 36.000 14.79 0.00 34.99 2.74
144 145 6.877236 TCATGTTGAAGTCATAGCATGTAGA 58.123 36.000 14.79 0.00 34.99 2.59
145 146 7.503549 TCATGTTGAAGTCATAGCATGTAGAT 58.496 34.615 14.79 0.00 34.99 1.98
146 147 7.654923 TCATGTTGAAGTCATAGCATGTAGATC 59.345 37.037 14.79 0.00 34.99 2.75
147 148 5.979517 TGTTGAAGTCATAGCATGTAGATCG 59.020 40.000 0.00 0.00 0.00 3.69
148 149 5.126396 TGAAGTCATAGCATGTAGATCGG 57.874 43.478 0.00 0.00 0.00 4.18
149 150 4.584743 TGAAGTCATAGCATGTAGATCGGT 59.415 41.667 0.00 0.00 0.00 4.69
150 151 5.069119 TGAAGTCATAGCATGTAGATCGGTT 59.931 40.000 0.00 0.00 0.00 4.44
151 152 6.264518 TGAAGTCATAGCATGTAGATCGGTTA 59.735 38.462 0.00 0.00 0.00 2.85
152 153 6.842437 AGTCATAGCATGTAGATCGGTTAT 57.158 37.500 0.00 0.00 0.00 1.89
153 154 6.625362 AGTCATAGCATGTAGATCGGTTATG 58.375 40.000 0.00 0.00 0.00 1.90
154 155 5.807520 GTCATAGCATGTAGATCGGTTATGG 59.192 44.000 0.00 0.00 0.00 2.74
155 156 5.480422 TCATAGCATGTAGATCGGTTATGGT 59.520 40.000 0.00 10.28 34.34 3.55
156 157 4.689612 AGCATGTAGATCGGTTATGGTT 57.310 40.909 0.00 0.00 0.00 3.67
157 158 5.036117 AGCATGTAGATCGGTTATGGTTT 57.964 39.130 0.00 0.00 0.00 3.27
158 159 4.816385 AGCATGTAGATCGGTTATGGTTTG 59.184 41.667 0.00 0.00 0.00 2.93
159 160 4.574828 GCATGTAGATCGGTTATGGTTTGT 59.425 41.667 0.00 0.00 0.00 2.83
160 161 5.756347 GCATGTAGATCGGTTATGGTTTGTA 59.244 40.000 0.00 0.00 0.00 2.41
161 162 6.292703 GCATGTAGATCGGTTATGGTTTGTAC 60.293 42.308 0.00 0.00 0.00 2.90
162 163 6.283544 TGTAGATCGGTTATGGTTTGTACA 57.716 37.500 0.00 0.00 0.00 2.90
163 164 6.699366 TGTAGATCGGTTATGGTTTGTACAA 58.301 36.000 3.59 3.59 0.00 2.41
164 165 7.160049 TGTAGATCGGTTATGGTTTGTACAAA 58.840 34.615 17.01 17.01 0.00 2.83
165 166 7.660617 TGTAGATCGGTTATGGTTTGTACAAAA 59.339 33.333 22.14 8.83 31.33 2.44
166 167 7.513371 AGATCGGTTATGGTTTGTACAAAAA 57.487 32.000 22.14 14.01 31.33 1.94
167 168 8.117813 AGATCGGTTATGGTTTGTACAAAAAT 57.882 30.769 22.14 19.27 31.33 1.82
168 169 8.026607 AGATCGGTTATGGTTTGTACAAAAATG 58.973 33.333 22.14 9.97 31.33 2.32
169 170 6.448006 TCGGTTATGGTTTGTACAAAAATGG 58.552 36.000 22.14 9.21 31.33 3.16
170 171 6.040616 TCGGTTATGGTTTGTACAAAAATGGT 59.959 34.615 22.14 9.69 31.33 3.55
171 172 6.144724 CGGTTATGGTTTGTACAAAAATGGTG 59.855 38.462 22.14 5.64 31.33 4.17
172 173 6.073494 GGTTATGGTTTGTACAAAAATGGTGC 60.073 38.462 22.14 8.27 31.33 5.01
173 174 4.471904 TGGTTTGTACAAAAATGGTGCA 57.528 36.364 22.14 0.00 31.33 4.57
174 175 5.028549 TGGTTTGTACAAAAATGGTGCAT 57.971 34.783 22.14 0.00 31.01 3.96
175 176 5.431765 TGGTTTGTACAAAAATGGTGCATT 58.568 33.333 22.14 0.00 35.39 3.56
176 177 5.295292 TGGTTTGTACAAAAATGGTGCATTG 59.705 36.000 22.14 0.00 34.04 2.82
177 178 5.525378 GGTTTGTACAAAAATGGTGCATTGA 59.475 36.000 22.14 0.00 34.04 2.57
178 179 6.204495 GGTTTGTACAAAAATGGTGCATTGAT 59.796 34.615 22.14 0.00 34.04 2.57
179 180 7.290118 GTTTGTACAAAAATGGTGCATTGATC 58.710 34.615 22.14 1.09 34.04 2.92
180 181 6.094193 TGTACAAAAATGGTGCATTGATCA 57.906 33.333 2.61 0.00 34.04 2.92
181 182 6.519382 TGTACAAAAATGGTGCATTGATCAA 58.481 32.000 11.26 11.26 34.04 2.57
182 183 5.927954 ACAAAAATGGTGCATTGATCAAC 57.072 34.783 11.07 0.00 34.04 3.18
183 184 5.366460 ACAAAAATGGTGCATTGATCAACA 58.634 33.333 11.07 4.12 34.04 3.33
184 185 5.236911 ACAAAAATGGTGCATTGATCAACAC 59.763 36.000 11.07 14.70 33.51 3.32
185 186 4.603989 AAATGGTGCATTGATCAACACA 57.396 36.364 23.17 16.43 33.51 3.72
186 187 4.811969 AATGGTGCATTGATCAACACAT 57.188 36.364 23.17 14.94 33.51 3.21
187 188 4.811969 ATGGTGCATTGATCAACACATT 57.188 36.364 23.17 11.88 33.51 2.71
188 189 3.915536 TGGTGCATTGATCAACACATTG 58.084 40.909 23.17 14.13 37.14 2.82
189 190 3.321396 TGGTGCATTGATCAACACATTGT 59.679 39.130 23.17 1.34 37.11 2.71
190 191 4.202233 TGGTGCATTGATCAACACATTGTT 60.202 37.500 23.17 0.68 42.08 2.83
191 192 4.386652 GGTGCATTGATCAACACATTGTTC 59.613 41.667 23.17 10.65 38.77 3.18
192 193 5.224888 GTGCATTGATCAACACATTGTTCT 58.775 37.500 19.15 0.00 38.77 3.01
193 194 6.380995 GTGCATTGATCAACACATTGTTCTA 58.619 36.000 19.15 0.00 38.77 2.10
194 195 6.862608 GTGCATTGATCAACACATTGTTCTAA 59.137 34.615 19.15 0.00 38.77 2.10
195 196 7.381948 GTGCATTGATCAACACATTGTTCTAAA 59.618 33.333 19.15 0.00 38.77 1.85
196 197 8.089597 TGCATTGATCAACACATTGTTCTAAAT 58.910 29.630 11.07 0.00 38.77 1.40
197 198 8.377681 GCATTGATCAACACATTGTTCTAAATG 58.622 33.333 11.07 0.28 38.77 2.32
208 209 8.659925 ACATTGTTCTAAATGTGCAAATTTGA 57.340 26.923 22.67 15.16 46.46 2.69
209 210 8.767085 ACATTGTTCTAAATGTGCAAATTTGAG 58.233 29.630 22.67 15.53 46.46 3.02
210 211 8.980610 CATTGTTCTAAATGTGCAAATTTGAGA 58.019 29.630 22.67 17.17 33.65 3.27
211 212 8.578308 TTGTTCTAAATGTGCAAATTTGAGAG 57.422 30.769 22.67 13.31 32.16 3.20
212 213 7.715657 TGTTCTAAATGTGCAAATTTGAGAGT 58.284 30.769 22.67 0.00 32.16 3.24
213 214 7.648908 TGTTCTAAATGTGCAAATTTGAGAGTG 59.351 33.333 22.67 7.68 32.16 3.51
214 215 7.509141 TCTAAATGTGCAAATTTGAGAGTGA 57.491 32.000 22.67 9.49 32.16 3.41
215 216 7.939782 TCTAAATGTGCAAATTTGAGAGTGAA 58.060 30.769 22.67 1.58 32.16 3.18
216 217 8.077991 TCTAAATGTGCAAATTTGAGAGTGAAG 58.922 33.333 22.67 10.74 32.16 3.02
217 218 6.395426 AATGTGCAAATTTGAGAGTGAAGA 57.605 33.333 22.31 0.00 0.00 2.87
218 219 5.833406 TGTGCAAATTTGAGAGTGAAGAA 57.167 34.783 22.31 0.00 0.00 2.52
219 220 5.581605 TGTGCAAATTTGAGAGTGAAGAAC 58.418 37.500 22.31 0.05 0.00 3.01
220 221 5.125257 TGTGCAAATTTGAGAGTGAAGAACA 59.875 36.000 22.31 2.73 0.00 3.18
221 222 6.183360 TGTGCAAATTTGAGAGTGAAGAACAT 60.183 34.615 22.31 0.00 0.00 2.71
222 223 6.698766 GTGCAAATTTGAGAGTGAAGAACATT 59.301 34.615 22.31 0.00 0.00 2.71
223 224 6.698329 TGCAAATTTGAGAGTGAAGAACATTG 59.302 34.615 22.31 0.00 0.00 2.82
224 225 6.698766 GCAAATTTGAGAGTGAAGAACATTGT 59.301 34.615 22.31 0.00 0.00 2.71
225 226 7.223387 GCAAATTTGAGAGTGAAGAACATTGTT 59.777 33.333 22.31 0.63 0.00 2.83
226 227 9.734620 CAAATTTGAGAGTGAAGAACATTGTTA 57.265 29.630 13.08 0.00 0.00 2.41
232 233 9.996554 TGAGAGTGAAGAACATTGTTATAAAGA 57.003 29.630 1.15 0.00 0.00 2.52
235 236 9.495754 GAGTGAAGAACATTGTTATAAAGATGC 57.504 33.333 1.15 0.00 0.00 3.91
236 237 9.013229 AGTGAAGAACATTGTTATAAAGATGCA 57.987 29.630 1.15 0.00 0.00 3.96
237 238 9.624697 GTGAAGAACATTGTTATAAAGATGCAA 57.375 29.630 1.15 0.11 0.00 4.08
248 249 8.849168 TGTTATAAAGATGCAAATATGACAGGG 58.151 33.333 0.00 0.00 0.00 4.45
249 250 9.066892 GTTATAAAGATGCAAATATGACAGGGA 57.933 33.333 0.00 0.00 0.00 4.20
250 251 9.812347 TTATAAAGATGCAAATATGACAGGGAT 57.188 29.630 0.00 0.00 0.00 3.85
251 252 8.716674 ATAAAGATGCAAATATGACAGGGATT 57.283 30.769 0.00 0.00 0.00 3.01
252 253 9.812347 ATAAAGATGCAAATATGACAGGGATTA 57.188 29.630 0.00 0.00 0.00 1.75
253 254 7.756395 AAGATGCAAATATGACAGGGATTAG 57.244 36.000 0.00 0.00 0.00 1.73
254 255 6.243900 AGATGCAAATATGACAGGGATTAGG 58.756 40.000 0.00 0.00 0.00 2.69
255 256 4.728772 TGCAAATATGACAGGGATTAGGG 58.271 43.478 0.00 0.00 0.00 3.53
256 257 4.415179 TGCAAATATGACAGGGATTAGGGA 59.585 41.667 0.00 0.00 0.00 4.20
257 258 5.103728 TGCAAATATGACAGGGATTAGGGAA 60.104 40.000 0.00 0.00 0.00 3.97
258 259 5.474876 GCAAATATGACAGGGATTAGGGAAG 59.525 44.000 0.00 0.00 0.00 3.46
259 260 4.917906 ATATGACAGGGATTAGGGAAGC 57.082 45.455 0.00 0.00 0.00 3.86
260 261 1.965414 TGACAGGGATTAGGGAAGCA 58.035 50.000 0.00 0.00 0.00 3.91
261 262 2.274542 TGACAGGGATTAGGGAAGCAA 58.725 47.619 0.00 0.00 0.00 3.91
262 263 2.026262 TGACAGGGATTAGGGAAGCAAC 60.026 50.000 0.00 0.00 0.00 4.17
263 264 1.065418 ACAGGGATTAGGGAAGCAACG 60.065 52.381 0.00 0.00 0.00 4.10
264 265 1.209504 CAGGGATTAGGGAAGCAACGA 59.790 52.381 0.00 0.00 0.00 3.85
265 266 1.913419 AGGGATTAGGGAAGCAACGAA 59.087 47.619 0.00 0.00 0.00 3.85
266 267 2.092914 AGGGATTAGGGAAGCAACGAAG 60.093 50.000 0.00 0.00 0.00 3.79
268 269 3.118519 GGGATTAGGGAAGCAACGAAGTA 60.119 47.826 0.00 0.00 45.00 2.24
269 270 3.869832 GGATTAGGGAAGCAACGAAGTAC 59.130 47.826 0.00 0.00 45.00 2.73
270 271 2.642139 TAGGGAAGCAACGAAGTACG 57.358 50.000 0.00 0.00 45.00 3.67
271 272 0.669625 AGGGAAGCAACGAAGTACGC 60.670 55.000 0.00 0.00 45.00 4.42
272 273 0.947180 GGGAAGCAACGAAGTACGCA 60.947 55.000 0.00 0.00 45.00 5.24
273 274 0.163146 GGAAGCAACGAAGTACGCAC 59.837 55.000 0.00 0.00 45.00 5.34
274 275 0.856641 GAAGCAACGAAGTACGCACA 59.143 50.000 0.00 0.00 45.00 4.57
275 276 1.459592 GAAGCAACGAAGTACGCACAT 59.540 47.619 0.00 0.00 45.00 3.21
276 277 2.357327 AGCAACGAAGTACGCACATA 57.643 45.000 0.00 0.00 45.00 2.29
277 278 1.990563 AGCAACGAAGTACGCACATAC 59.009 47.619 0.00 0.00 45.00 2.39
278 279 1.990563 GCAACGAAGTACGCACATACT 59.009 47.619 0.00 0.00 45.00 2.12
279 280 2.027688 GCAACGAAGTACGCACATACTC 59.972 50.000 0.00 0.00 45.00 2.59
280 281 2.556534 ACGAAGTACGCACATACTCC 57.443 50.000 0.00 0.00 46.94 3.85
281 282 1.133790 ACGAAGTACGCACATACTCCC 59.866 52.381 0.00 0.00 46.94 4.30
282 283 1.404391 CGAAGTACGCACATACTCCCT 59.596 52.381 0.00 0.00 34.18 4.20
283 284 2.541178 CGAAGTACGCACATACTCCCTC 60.541 54.545 0.00 0.00 34.18 4.30
284 285 1.400737 AGTACGCACATACTCCCTCC 58.599 55.000 0.00 0.00 28.86 4.30
285 286 0.030369 GTACGCACATACTCCCTCCG 59.970 60.000 0.00 0.00 0.00 4.63
286 287 0.394762 TACGCACATACTCCCTCCGT 60.395 55.000 0.00 0.00 0.00 4.69
287 288 1.065928 CGCACATACTCCCTCCGTC 59.934 63.158 0.00 0.00 0.00 4.79
288 289 1.442148 GCACATACTCCCTCCGTCC 59.558 63.158 0.00 0.00 0.00 4.79
289 290 2.029307 GCACATACTCCCTCCGTCCC 62.029 65.000 0.00 0.00 0.00 4.46
290 291 1.455217 ACATACTCCCTCCGTCCCG 60.455 63.158 0.00 0.00 0.00 5.14
291 292 1.152819 CATACTCCCTCCGTCCCGA 60.153 63.158 0.00 0.00 0.00 5.14
292 293 0.754217 CATACTCCCTCCGTCCCGAA 60.754 60.000 0.00 0.00 0.00 4.30
293 294 0.032813 ATACTCCCTCCGTCCCGAAA 60.033 55.000 0.00 0.00 0.00 3.46
294 295 0.032813 TACTCCCTCCGTCCCGAAAT 60.033 55.000 0.00 0.00 0.00 2.17
295 296 0.032813 ACTCCCTCCGTCCCGAAATA 60.033 55.000 0.00 0.00 0.00 1.40
296 297 1.117150 CTCCCTCCGTCCCGAAATAA 58.883 55.000 0.00 0.00 0.00 1.40
297 298 1.068741 CTCCCTCCGTCCCGAAATAAG 59.931 57.143 0.00 0.00 0.00 1.73
298 299 1.117150 CCCTCCGTCCCGAAATAAGA 58.883 55.000 0.00 0.00 0.00 2.10
299 300 1.068741 CCCTCCGTCCCGAAATAAGAG 59.931 57.143 0.00 0.00 0.00 2.85
300 301 1.755380 CCTCCGTCCCGAAATAAGAGT 59.245 52.381 0.00 0.00 0.00 3.24
301 302 2.223758 CCTCCGTCCCGAAATAAGAGTC 60.224 54.545 0.00 0.00 0.00 3.36
302 303 2.688958 CTCCGTCCCGAAATAAGAGTCT 59.311 50.000 0.00 0.00 0.00 3.24
303 304 2.686915 TCCGTCCCGAAATAAGAGTCTC 59.313 50.000 0.00 0.00 0.00 3.36
304 305 2.426024 CCGTCCCGAAATAAGAGTCTCA 59.574 50.000 1.94 0.00 0.00 3.27
305 306 3.119245 CCGTCCCGAAATAAGAGTCTCAA 60.119 47.826 1.94 0.00 0.00 3.02
306 307 3.858238 CGTCCCGAAATAAGAGTCTCAAC 59.142 47.826 1.94 0.00 0.00 3.18
307 308 4.380655 CGTCCCGAAATAAGAGTCTCAACT 60.381 45.833 1.94 0.00 38.88 3.16
308 309 5.480205 GTCCCGAAATAAGAGTCTCAACTT 58.520 41.667 1.94 0.00 35.28 2.66
309 310 5.932883 GTCCCGAAATAAGAGTCTCAACTTT 59.067 40.000 1.94 0.00 35.28 2.66
310 311 5.932303 TCCCGAAATAAGAGTCTCAACTTTG 59.068 40.000 1.94 0.00 35.28 2.77
311 312 5.701290 CCCGAAATAAGAGTCTCAACTTTGT 59.299 40.000 1.94 0.00 35.28 2.83
312 313 6.872020 CCCGAAATAAGAGTCTCAACTTTGTA 59.128 38.462 1.94 0.00 35.28 2.41
313 314 7.148623 CCCGAAATAAGAGTCTCAACTTTGTAC 60.149 40.741 1.94 0.00 35.28 2.90
314 315 7.599245 CCGAAATAAGAGTCTCAACTTTGTACT 59.401 37.037 1.94 1.11 35.28 2.73
315 316 9.622004 CGAAATAAGAGTCTCAACTTTGTACTA 57.378 33.333 1.94 0.00 35.28 1.82
320 321 7.826918 AGAGTCTCAACTTTGTACTAACTCT 57.173 36.000 1.94 0.00 36.90 3.24
321 322 8.921353 AGAGTCTCAACTTTGTACTAACTCTA 57.079 34.615 1.94 0.00 39.20 2.43
322 323 9.005777 AGAGTCTCAACTTTGTACTAACTCTAG 57.994 37.037 1.94 0.00 39.20 2.43
323 324 8.694581 AGTCTCAACTTTGTACTAACTCTAGT 57.305 34.615 0.00 0.00 35.82 2.57
324 325 9.790344 AGTCTCAACTTTGTACTAACTCTAGTA 57.210 33.333 0.00 0.00 34.37 1.82
348 349 6.646267 ACAAAGTTGTACTAAGGTTGAGACA 58.354 36.000 0.00 0.00 40.16 3.41
349 350 6.537660 ACAAAGTTGTACTAAGGTTGAGACAC 59.462 38.462 0.00 0.00 40.16 3.67
350 351 6.481434 AAGTTGTACTAAGGTTGAGACACT 57.519 37.500 0.00 0.00 0.00 3.55
351 352 6.481434 AGTTGTACTAAGGTTGAGACACTT 57.519 37.500 0.00 0.00 0.00 3.16
352 353 7.592885 AGTTGTACTAAGGTTGAGACACTTA 57.407 36.000 0.00 0.00 0.00 2.24
353 354 8.191534 AGTTGTACTAAGGTTGAGACACTTAT 57.808 34.615 0.00 0.00 0.00 1.73
354 355 8.648693 AGTTGTACTAAGGTTGAGACACTTATT 58.351 33.333 0.00 0.00 0.00 1.40
355 356 9.269453 GTTGTACTAAGGTTGAGACACTTATTT 57.731 33.333 0.00 0.00 0.00 1.40
356 357 9.841295 TTGTACTAAGGTTGAGACACTTATTTT 57.159 29.630 0.00 0.00 0.00 1.82
357 358 9.268268 TGTACTAAGGTTGAGACACTTATTTTG 57.732 33.333 0.00 0.00 0.00 2.44
358 359 9.485206 GTACTAAGGTTGAGACACTTATTTTGA 57.515 33.333 0.00 0.00 0.00 2.69
359 360 8.608844 ACTAAGGTTGAGACACTTATTTTGAG 57.391 34.615 0.00 0.00 0.00 3.02
360 361 8.429641 ACTAAGGTTGAGACACTTATTTTGAGA 58.570 33.333 0.00 0.00 0.00 3.27
361 362 7.497925 AAGGTTGAGACACTTATTTTGAGAC 57.502 36.000 0.00 0.00 0.00 3.36
362 363 5.696724 AGGTTGAGACACTTATTTTGAGACG 59.303 40.000 0.00 0.00 0.00 4.18
363 364 5.694910 GGTTGAGACACTTATTTTGAGACGA 59.305 40.000 0.00 0.00 0.00 4.20
364 365 6.202188 GGTTGAGACACTTATTTTGAGACGAA 59.798 38.462 0.00 0.00 0.00 3.85
365 366 7.284351 GTTGAGACACTTATTTTGAGACGAAG 58.716 38.462 0.00 0.00 0.00 3.79
366 367 5.926542 TGAGACACTTATTTTGAGACGAAGG 59.073 40.000 0.00 0.00 0.00 3.46
367 368 5.238583 AGACACTTATTTTGAGACGAAGGG 58.761 41.667 0.00 0.00 0.00 3.95
368 369 5.011738 AGACACTTATTTTGAGACGAAGGGA 59.988 40.000 0.00 0.00 0.00 4.20
369 370 5.238583 ACACTTATTTTGAGACGAAGGGAG 58.761 41.667 0.00 0.00 0.00 4.30
370 371 5.221661 ACACTTATTTTGAGACGAAGGGAGT 60.222 40.000 0.00 0.00 0.00 3.85
371 372 6.014840 ACACTTATTTTGAGACGAAGGGAGTA 60.015 38.462 0.00 0.00 0.00 2.59
372 373 7.042335 CACTTATTTTGAGACGAAGGGAGTAT 58.958 38.462 0.00 0.00 0.00 2.12
373 374 8.195436 CACTTATTTTGAGACGAAGGGAGTATA 58.805 37.037 0.00 0.00 0.00 1.47
374 375 8.925338 ACTTATTTTGAGACGAAGGGAGTATAT 58.075 33.333 0.00 0.00 0.00 0.86
375 376 9.197694 CTTATTTTGAGACGAAGGGAGTATATG 57.802 37.037 0.00 0.00 0.00 1.78
376 377 6.540438 TTTTGAGACGAAGGGAGTATATGT 57.460 37.500 0.00 0.00 0.00 2.29
377 378 6.540438 TTTGAGACGAAGGGAGTATATGTT 57.460 37.500 0.00 0.00 0.00 2.71
378 379 7.649533 TTTGAGACGAAGGGAGTATATGTTA 57.350 36.000 0.00 0.00 0.00 2.41
379 380 7.649533 TTGAGACGAAGGGAGTATATGTTAA 57.350 36.000 0.00 0.00 0.00 2.01
380 381 7.649533 TGAGACGAAGGGAGTATATGTTAAA 57.350 36.000 0.00 0.00 0.00 1.52
381 382 8.246430 TGAGACGAAGGGAGTATATGTTAAAT 57.754 34.615 0.00 0.00 0.00 1.40
382 383 9.358406 TGAGACGAAGGGAGTATATGTTAAATA 57.642 33.333 0.00 0.00 0.00 1.40
383 384 9.843334 GAGACGAAGGGAGTATATGTTAAATAG 57.157 37.037 0.00 0.00 0.00 1.73
384 385 9.584008 AGACGAAGGGAGTATATGTTAAATAGA 57.416 33.333 0.00 0.00 0.00 1.98
412 413 7.470289 TTTTGTAAAATCGTTGACCCAATTG 57.530 32.000 0.00 0.00 0.00 2.32
413 414 6.392625 TTGTAAAATCGTTGACCCAATTGA 57.607 33.333 7.12 0.00 0.00 2.57
414 415 6.392625 TGTAAAATCGTTGACCCAATTGAA 57.607 33.333 7.12 0.00 0.00 2.69
415 416 6.987386 TGTAAAATCGTTGACCCAATTGAAT 58.013 32.000 7.12 0.00 0.00 2.57
416 417 8.112016 TGTAAAATCGTTGACCCAATTGAATA 57.888 30.769 7.12 0.00 0.00 1.75
417 418 8.744652 TGTAAAATCGTTGACCCAATTGAATAT 58.255 29.630 7.12 0.00 0.00 1.28
418 419 9.233232 GTAAAATCGTTGACCCAATTGAATATC 57.767 33.333 7.12 0.00 0.00 1.63
419 420 7.403312 AAATCGTTGACCCAATTGAATATCA 57.597 32.000 7.12 2.09 0.00 2.15
420 421 7.587037 AATCGTTGACCCAATTGAATATCAT 57.413 32.000 7.12 0.00 0.00 2.45
421 422 6.375945 TCGTTGACCCAATTGAATATCATG 57.624 37.500 7.12 0.00 0.00 3.07
422 423 5.885352 TCGTTGACCCAATTGAATATCATGT 59.115 36.000 7.12 0.00 0.00 3.21
423 424 7.051000 TCGTTGACCCAATTGAATATCATGTA 58.949 34.615 7.12 0.00 0.00 2.29
424 425 7.554476 TCGTTGACCCAATTGAATATCATGTAA 59.446 33.333 7.12 0.00 0.00 2.41
425 426 8.187480 CGTTGACCCAATTGAATATCATGTAAA 58.813 33.333 7.12 0.00 0.00 2.01
426 427 9.868277 GTTGACCCAATTGAATATCATGTAAAA 57.132 29.630 7.12 0.00 0.00 1.52
434 435 9.970395 AATTGAATATCATGTAAAATCATGCGT 57.030 25.926 0.00 0.00 43.18 5.24
435 436 8.785468 TTGAATATCATGTAAAATCATGCGTG 57.215 30.769 0.00 0.00 43.18 5.34
436 437 7.929159 TGAATATCATGTAAAATCATGCGTGT 58.071 30.769 5.68 0.00 43.18 4.49
437 438 8.404765 TGAATATCATGTAAAATCATGCGTGTT 58.595 29.630 5.68 0.00 43.18 3.32
438 439 8.786937 AATATCATGTAAAATCATGCGTGTTC 57.213 30.769 5.68 0.00 43.18 3.18
439 440 4.980590 TCATGTAAAATCATGCGTGTTCC 58.019 39.130 5.68 0.00 43.18 3.62
440 441 3.840890 TGTAAAATCATGCGTGTTCCC 57.159 42.857 5.68 0.00 0.00 3.97
441 442 3.417101 TGTAAAATCATGCGTGTTCCCT 58.583 40.909 5.68 0.00 0.00 4.20
442 443 3.823873 TGTAAAATCATGCGTGTTCCCTT 59.176 39.130 5.68 0.00 0.00 3.95
443 444 3.302365 AAAATCATGCGTGTTCCCTTG 57.698 42.857 5.68 0.00 0.00 3.61
444 445 1.176527 AATCATGCGTGTTCCCTTGG 58.823 50.000 5.68 0.00 0.00 3.61
445 446 0.038166 ATCATGCGTGTTCCCTTGGT 59.962 50.000 5.68 0.00 0.00 3.67
446 447 0.888736 TCATGCGTGTTCCCTTGGTG 60.889 55.000 5.68 0.00 0.00 4.17
447 448 2.268076 ATGCGTGTTCCCTTGGTGC 61.268 57.895 0.00 0.00 0.00 5.01
448 449 2.904866 GCGTGTTCCCTTGGTGCA 60.905 61.111 0.00 0.00 0.00 4.57
449 450 2.908073 GCGTGTTCCCTTGGTGCAG 61.908 63.158 0.00 0.00 0.00 4.41
450 451 2.260869 CGTGTTCCCTTGGTGCAGG 61.261 63.158 0.00 0.00 0.00 4.85
451 452 2.203480 TGTTCCCTTGGTGCAGGC 60.203 61.111 0.00 0.00 31.69 4.85
452 453 2.203480 GTTCCCTTGGTGCAGGCA 60.203 61.111 0.00 0.00 31.69 4.75
453 454 2.115910 TTCCCTTGGTGCAGGCAG 59.884 61.111 0.00 0.00 31.69 4.85
454 455 2.766925 TTCCCTTGGTGCAGGCAGT 61.767 57.895 0.00 0.00 31.69 4.40
455 456 2.203538 CCCTTGGTGCAGGCAGTT 60.204 61.111 0.00 0.00 31.69 3.16
456 457 2.567497 CCCTTGGTGCAGGCAGTTG 61.567 63.158 0.00 0.00 31.69 3.16
457 458 2.337532 CTTGGTGCAGGCAGTTGC 59.662 61.111 0.00 0.00 44.33 4.17
463 464 2.340809 GCAGGCAGTTGCATTGCA 59.659 55.556 20.96 7.38 45.91 4.08
464 465 1.736645 GCAGGCAGTTGCATTGCAG 60.737 57.895 20.96 14.93 45.91 4.41
465 466 1.663739 CAGGCAGTTGCATTGCAGT 59.336 52.632 20.96 8.45 43.28 4.40
466 467 0.388134 CAGGCAGTTGCATTGCAGTC 60.388 55.000 20.96 9.28 43.28 3.51
467 468 0.538977 AGGCAGTTGCATTGCAGTCT 60.539 50.000 20.96 11.32 43.28 3.24
468 469 0.388134 GGCAGTTGCATTGCAGTCTG 60.388 55.000 26.75 26.75 43.28 3.51
469 470 0.313043 GCAGTTGCATTGCAGTCTGT 59.687 50.000 28.91 9.70 40.61 3.41
470 471 1.665161 GCAGTTGCATTGCAGTCTGTC 60.665 52.381 28.91 22.24 40.61 3.51
471 472 0.870393 AGTTGCATTGCAGTCTGTCG 59.130 50.000 11.76 0.00 40.61 4.35
472 473 0.110056 GTTGCATTGCAGTCTGTCGG 60.110 55.000 11.76 0.00 40.61 4.79
473 474 0.534877 TTGCATTGCAGTCTGTCGGT 60.535 50.000 11.76 0.00 40.61 4.69
474 475 1.229975 TGCATTGCAGTCTGTCGGTG 61.230 55.000 7.38 0.00 33.32 4.94
475 476 1.499056 CATTGCAGTCTGTCGGTGC 59.501 57.895 0.93 0.00 37.73 5.01
476 477 1.672356 ATTGCAGTCTGTCGGTGCC 60.672 57.895 0.93 0.00 36.31 5.01
477 478 4.662961 TGCAGTCTGTCGGTGCCG 62.663 66.667 3.94 3.94 36.31 5.69
478 479 4.357947 GCAGTCTGTCGGTGCCGA 62.358 66.667 9.48 9.48 46.87 5.54
494 495 2.665185 GACGTCGGTGGCTGCTTT 60.665 61.111 0.00 0.00 0.00 3.51
495 496 1.373748 GACGTCGGTGGCTGCTTTA 60.374 57.895 0.00 0.00 0.00 1.85
496 497 1.352156 GACGTCGGTGGCTGCTTTAG 61.352 60.000 0.00 0.00 0.00 1.85
497 498 2.100631 CGTCGGTGGCTGCTTTAGG 61.101 63.158 0.00 0.00 0.00 2.69
505 506 3.017323 CTGCTTTAGGCGGCGATG 58.983 61.111 12.98 0.04 45.43 3.84
506 507 2.513666 TGCTTTAGGCGGCGATGG 60.514 61.111 12.98 0.00 45.43 3.51
507 508 3.953887 GCTTTAGGCGGCGATGGC 61.954 66.667 12.98 3.73 38.90 4.40
540 541 2.749839 GGCCATGGCGCAACAGTA 60.750 61.111 29.90 0.00 43.06 2.74
541 542 2.485122 GCCATGGCGCAACAGTAC 59.515 61.111 23.48 0.00 0.00 2.73
542 543 2.784596 CCATGGCGCAACAGTACG 59.215 61.111 10.83 0.00 0.00 3.67
543 544 2.032634 CCATGGCGCAACAGTACGT 61.033 57.895 10.83 0.00 0.00 3.57
544 545 1.132436 CATGGCGCAACAGTACGTG 59.868 57.895 10.83 0.00 0.00 4.49
545 546 2.032634 ATGGCGCAACAGTACGTGG 61.033 57.895 10.83 0.00 0.00 4.94
546 547 4.084888 GGCGCAACAGTACGTGGC 62.085 66.667 10.83 7.03 41.66 5.01
547 548 3.041940 GCGCAACAGTACGTGGCT 61.042 61.111 0.30 0.00 43.07 4.75
548 549 2.604174 GCGCAACAGTACGTGGCTT 61.604 57.895 0.30 0.00 43.07 4.35
549 550 1.204062 CGCAACAGTACGTGGCTTG 59.796 57.895 13.02 0.00 43.07 4.01
550 551 1.574428 GCAACAGTACGTGGCTTGG 59.426 57.895 0.00 0.00 41.85 3.61
551 552 1.574428 CAACAGTACGTGGCTTGGC 59.426 57.895 0.00 0.00 0.00 4.52
552 553 1.959226 AACAGTACGTGGCTTGGCG 60.959 57.895 0.00 0.00 0.00 5.69
553 554 3.118454 CAGTACGTGGCTTGGCGG 61.118 66.667 0.00 0.00 0.00 6.13
573 574 4.363990 CCGCCGTCTCACTGCAGT 62.364 66.667 15.25 15.25 0.00 4.40
574 575 3.108289 CGCCGTCTCACTGCAGTG 61.108 66.667 36.07 36.07 46.91 3.66
575 576 2.029666 GCCGTCTCACTGCAGTGT 59.970 61.111 38.41 9.91 45.76 3.55
576 577 2.313172 GCCGTCTCACTGCAGTGTG 61.313 63.158 38.41 35.62 45.76 3.82
873 907 1.254954 GGTACAAGAGGACACCGAGT 58.745 55.000 0.00 0.00 0.00 4.18
1358 1867 0.537188 GAGCGGATTCAACTGGAGGA 59.463 55.000 0.00 0.00 0.00 3.71
1778 2363 4.021016 GTCATCAGTTTCAGTGGTAGAGGT 60.021 45.833 0.00 0.00 0.00 3.85
1779 2364 4.220821 TCATCAGTTTCAGTGGTAGAGGTC 59.779 45.833 0.00 0.00 0.00 3.85
1788 2374 2.826725 AGTGGTAGAGGTCGAAAAGGAG 59.173 50.000 0.00 0.00 0.00 3.69
2450 3231 8.418662 ACATAGCAAGCATGATTTAAACATCAT 58.581 29.630 0.00 0.00 43.49 2.45
2466 3247 5.718649 ACATCATACAACACTTACGCATC 57.281 39.130 0.00 0.00 0.00 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 6.202516 TGACCGAATGAATAAAACCCAATC 57.797 37.500 0.00 0.00 0.00 2.67
30 31 6.659668 TGTATGACCGAATGAATAAAACCCAA 59.340 34.615 0.00 0.00 0.00 4.12
47 48 8.444715 CAGTATAGTAGTCGAATCTGTATGACC 58.555 40.741 0.00 0.00 31.75 4.02
107 108 7.434897 TGACTTCAACATGAATTTTAACAGTGC 59.565 33.333 0.00 0.00 35.59 4.40
108 109 8.854979 TGACTTCAACATGAATTTTAACAGTG 57.145 30.769 0.00 0.00 35.59 3.66
111 112 9.624697 GCTATGACTTCAACATGAATTTTAACA 57.375 29.630 0.00 0.00 35.59 2.41
112 113 9.624697 TGCTATGACTTCAACATGAATTTTAAC 57.375 29.630 0.00 0.00 35.59 2.01
114 115 9.791820 CATGCTATGACTTCAACATGAATTTTA 57.208 29.630 0.00 0.00 37.65 1.52
115 116 8.308931 ACATGCTATGACTTCAACATGAATTTT 58.691 29.630 19.24 2.87 38.24 1.82
116 117 7.833786 ACATGCTATGACTTCAACATGAATTT 58.166 30.769 19.24 3.12 38.24 1.82
117 118 7.400599 ACATGCTATGACTTCAACATGAATT 57.599 32.000 19.24 0.00 38.24 2.17
118 119 7.989170 TCTACATGCTATGACTTCAACATGAAT 59.011 33.333 19.24 7.43 38.24 2.57
119 120 7.330262 TCTACATGCTATGACTTCAACATGAA 58.670 34.615 19.24 0.00 38.24 2.57
120 121 6.877236 TCTACATGCTATGACTTCAACATGA 58.123 36.000 19.24 8.43 38.24 3.07
121 122 7.359014 CGATCTACATGCTATGACTTCAACATG 60.359 40.741 14.16 14.16 39.51 3.21
122 123 6.644181 CGATCTACATGCTATGACTTCAACAT 59.356 38.462 0.00 0.00 0.00 2.71
123 124 5.979517 CGATCTACATGCTATGACTTCAACA 59.020 40.000 0.00 0.00 0.00 3.33
124 125 5.403766 CCGATCTACATGCTATGACTTCAAC 59.596 44.000 0.00 0.00 0.00 3.18
125 126 5.069119 ACCGATCTACATGCTATGACTTCAA 59.931 40.000 0.00 0.00 0.00 2.69
126 127 4.584743 ACCGATCTACATGCTATGACTTCA 59.415 41.667 0.00 0.00 0.00 3.02
127 128 5.127693 ACCGATCTACATGCTATGACTTC 57.872 43.478 0.00 0.00 0.00 3.01
128 129 5.537300 AACCGATCTACATGCTATGACTT 57.463 39.130 0.00 0.00 0.00 3.01
129 130 6.350528 CCATAACCGATCTACATGCTATGACT 60.351 42.308 0.00 0.00 0.00 3.41
130 131 5.807520 CCATAACCGATCTACATGCTATGAC 59.192 44.000 0.00 0.00 0.00 3.06
131 132 5.480422 ACCATAACCGATCTACATGCTATGA 59.520 40.000 0.00 0.00 0.00 2.15
132 133 5.724328 ACCATAACCGATCTACATGCTATG 58.276 41.667 0.00 0.00 0.00 2.23
133 134 6.360370 AACCATAACCGATCTACATGCTAT 57.640 37.500 0.00 0.00 0.00 2.97
134 135 5.801531 AACCATAACCGATCTACATGCTA 57.198 39.130 0.00 0.00 0.00 3.49
135 136 4.689612 AACCATAACCGATCTACATGCT 57.310 40.909 0.00 0.00 0.00 3.79
136 137 4.574828 ACAAACCATAACCGATCTACATGC 59.425 41.667 0.00 0.00 0.00 4.06
137 138 6.759356 TGTACAAACCATAACCGATCTACATG 59.241 38.462 0.00 0.00 0.00 3.21
138 139 6.880484 TGTACAAACCATAACCGATCTACAT 58.120 36.000 0.00 0.00 0.00 2.29
139 140 6.283544 TGTACAAACCATAACCGATCTACA 57.716 37.500 0.00 0.00 0.00 2.74
140 141 7.599630 TTTGTACAAACCATAACCGATCTAC 57.400 36.000 17.01 0.00 0.00 2.59
141 142 8.618702 TTTTTGTACAAACCATAACCGATCTA 57.381 30.769 20.43 0.00 0.00 1.98
142 143 7.513371 TTTTTGTACAAACCATAACCGATCT 57.487 32.000 20.43 0.00 0.00 2.75
143 144 7.274686 CCATTTTTGTACAAACCATAACCGATC 59.725 37.037 20.43 0.00 0.00 3.69
144 145 7.093992 CCATTTTTGTACAAACCATAACCGAT 58.906 34.615 20.43 2.11 0.00 4.18
145 146 6.040616 ACCATTTTTGTACAAACCATAACCGA 59.959 34.615 20.43 0.01 0.00 4.69
146 147 6.144724 CACCATTTTTGTACAAACCATAACCG 59.855 38.462 20.43 8.33 0.00 4.44
147 148 6.073494 GCACCATTTTTGTACAAACCATAACC 60.073 38.462 20.43 4.54 0.00 2.85
148 149 6.480320 TGCACCATTTTTGTACAAACCATAAC 59.520 34.615 20.43 8.56 0.00 1.89
149 150 6.582636 TGCACCATTTTTGTACAAACCATAA 58.417 32.000 20.43 12.41 0.00 1.90
150 151 6.161855 TGCACCATTTTTGTACAAACCATA 57.838 33.333 20.43 3.40 0.00 2.74
151 152 5.028549 TGCACCATTTTTGTACAAACCAT 57.971 34.783 20.43 12.55 0.00 3.55
152 153 4.471904 TGCACCATTTTTGTACAAACCA 57.528 36.364 20.43 10.80 0.00 3.67
153 154 5.525378 TCAATGCACCATTTTTGTACAAACC 59.475 36.000 20.43 4.52 31.05 3.27
154 155 6.595772 TCAATGCACCATTTTTGTACAAAC 57.404 33.333 20.43 8.06 31.05 2.93
155 156 6.988580 TGATCAATGCACCATTTTTGTACAAA 59.011 30.769 17.01 17.01 31.05 2.83
156 157 6.519382 TGATCAATGCACCATTTTTGTACAA 58.481 32.000 3.59 3.59 31.05 2.41
157 158 6.094193 TGATCAATGCACCATTTTTGTACA 57.906 33.333 0.00 0.00 31.05 2.90
158 159 6.423302 TGTTGATCAATGCACCATTTTTGTAC 59.577 34.615 12.12 0.00 31.05 2.90
159 160 6.423302 GTGTTGATCAATGCACCATTTTTGTA 59.577 34.615 12.12 0.00 31.05 2.41
160 161 5.236911 GTGTTGATCAATGCACCATTTTTGT 59.763 36.000 12.12 0.00 31.05 2.83
161 162 5.236695 TGTGTTGATCAATGCACCATTTTTG 59.763 36.000 20.47 0.00 31.05 2.44
162 163 5.366460 TGTGTTGATCAATGCACCATTTTT 58.634 33.333 20.47 0.00 31.05 1.94
163 164 4.958509 TGTGTTGATCAATGCACCATTTT 58.041 34.783 20.47 0.00 31.05 1.82
164 165 4.603989 TGTGTTGATCAATGCACCATTT 57.396 36.364 20.47 0.00 31.05 2.32
165 166 4.811969 ATGTGTTGATCAATGCACCATT 57.188 36.364 20.47 8.01 34.04 3.16
166 167 4.020928 ACAATGTGTTGATCAATGCACCAT 60.021 37.500 20.47 13.53 38.71 3.55
167 168 3.321396 ACAATGTGTTGATCAATGCACCA 59.679 39.130 20.47 8.67 38.71 4.17
168 169 3.916761 ACAATGTGTTGATCAATGCACC 58.083 40.909 20.47 6.43 38.71 5.01
169 170 5.224888 AGAACAATGTGTTGATCAATGCAC 58.775 37.500 17.87 17.87 41.28 4.57
170 171 5.456548 AGAACAATGTGTTGATCAATGCA 57.543 34.783 12.12 13.53 41.28 3.96
171 172 7.872163 TTTAGAACAATGTGTTGATCAATGC 57.128 32.000 12.12 8.21 41.28 3.56
172 173 9.414295 ACATTTAGAACAATGTGTTGATCAATG 57.586 29.630 12.12 7.90 44.19 2.82
183 184 8.659925 TCAAATTTGCACATTTAGAACAATGT 57.340 26.923 13.54 0.00 46.34 2.71
184 185 8.980610 TCTCAAATTTGCACATTTAGAACAATG 58.019 29.630 13.54 0.00 39.67 2.82
185 186 9.199982 CTCTCAAATTTGCACATTTAGAACAAT 57.800 29.630 13.54 0.00 0.00 2.71
186 187 8.196771 ACTCTCAAATTTGCACATTTAGAACAA 58.803 29.630 13.54 0.00 0.00 2.83
187 188 7.648908 CACTCTCAAATTTGCACATTTAGAACA 59.351 33.333 13.54 1.64 0.00 3.18
188 189 7.862372 TCACTCTCAAATTTGCACATTTAGAAC 59.138 33.333 13.54 0.00 0.00 3.01
189 190 7.939782 TCACTCTCAAATTTGCACATTTAGAA 58.060 30.769 13.54 0.00 0.00 2.10
190 191 7.509141 TCACTCTCAAATTTGCACATTTAGA 57.491 32.000 13.54 11.81 0.00 2.10
191 192 8.077991 TCTTCACTCTCAAATTTGCACATTTAG 58.922 33.333 13.54 7.58 0.00 1.85
192 193 7.939782 TCTTCACTCTCAAATTTGCACATTTA 58.060 30.769 13.54 0.00 0.00 1.40
193 194 6.808829 TCTTCACTCTCAAATTTGCACATTT 58.191 32.000 13.54 4.98 0.00 2.32
194 195 6.395426 TCTTCACTCTCAAATTTGCACATT 57.605 33.333 13.54 0.00 0.00 2.71
195 196 6.183360 TGTTCTTCACTCTCAAATTTGCACAT 60.183 34.615 13.54 0.00 0.00 3.21
196 197 5.125257 TGTTCTTCACTCTCAAATTTGCACA 59.875 36.000 13.54 0.00 0.00 4.57
197 198 5.581605 TGTTCTTCACTCTCAAATTTGCAC 58.418 37.500 13.54 0.00 0.00 4.57
198 199 5.833406 TGTTCTTCACTCTCAAATTTGCA 57.167 34.783 13.54 1.64 0.00 4.08
199 200 6.698766 ACAATGTTCTTCACTCTCAAATTTGC 59.301 34.615 13.54 0.00 0.00 3.68
200 201 8.638685 AACAATGTTCTTCACTCTCAAATTTG 57.361 30.769 12.15 12.15 0.00 2.32
206 207 9.996554 TCTTTATAACAATGTTCTTCACTCTCA 57.003 29.630 0.22 0.00 0.00 3.27
209 210 9.495754 GCATCTTTATAACAATGTTCTTCACTC 57.504 33.333 0.22 0.00 0.00 3.51
210 211 9.013229 TGCATCTTTATAACAATGTTCTTCACT 57.987 29.630 0.22 0.00 0.00 3.41
211 212 9.624697 TTGCATCTTTATAACAATGTTCTTCAC 57.375 29.630 0.22 0.00 0.00 3.18
222 223 8.849168 CCCTGTCATATTTGCATCTTTATAACA 58.151 33.333 0.00 0.00 0.00 2.41
223 224 9.066892 TCCCTGTCATATTTGCATCTTTATAAC 57.933 33.333 0.00 0.00 0.00 1.89
224 225 9.812347 ATCCCTGTCATATTTGCATCTTTATAA 57.188 29.630 0.00 0.00 0.00 0.98
225 226 9.812347 AATCCCTGTCATATTTGCATCTTTATA 57.188 29.630 0.00 0.00 0.00 0.98
226 227 8.716674 AATCCCTGTCATATTTGCATCTTTAT 57.283 30.769 0.00 0.00 0.00 1.40
227 228 9.288576 CTAATCCCTGTCATATTTGCATCTTTA 57.711 33.333 0.00 0.00 0.00 1.85
228 229 7.232127 CCTAATCCCTGTCATATTTGCATCTTT 59.768 37.037 0.00 0.00 0.00 2.52
229 230 6.718454 CCTAATCCCTGTCATATTTGCATCTT 59.282 38.462 0.00 0.00 0.00 2.40
230 231 6.243900 CCTAATCCCTGTCATATTTGCATCT 58.756 40.000 0.00 0.00 0.00 2.90
231 232 5.416952 CCCTAATCCCTGTCATATTTGCATC 59.583 44.000 0.00 0.00 0.00 3.91
232 233 5.074929 TCCCTAATCCCTGTCATATTTGCAT 59.925 40.000 0.00 0.00 0.00 3.96
233 234 4.415179 TCCCTAATCCCTGTCATATTTGCA 59.585 41.667 0.00 0.00 0.00 4.08
234 235 4.985538 TCCCTAATCCCTGTCATATTTGC 58.014 43.478 0.00 0.00 0.00 3.68
235 236 5.474876 GCTTCCCTAATCCCTGTCATATTTG 59.525 44.000 0.00 0.00 0.00 2.32
236 237 5.134339 TGCTTCCCTAATCCCTGTCATATTT 59.866 40.000 0.00 0.00 0.00 1.40
237 238 4.665009 TGCTTCCCTAATCCCTGTCATATT 59.335 41.667 0.00 0.00 0.00 1.28
238 239 4.242811 TGCTTCCCTAATCCCTGTCATAT 58.757 43.478 0.00 0.00 0.00 1.78
239 240 3.664320 TGCTTCCCTAATCCCTGTCATA 58.336 45.455 0.00 0.00 0.00 2.15
240 241 2.492025 TGCTTCCCTAATCCCTGTCAT 58.508 47.619 0.00 0.00 0.00 3.06
241 242 1.965414 TGCTTCCCTAATCCCTGTCA 58.035 50.000 0.00 0.00 0.00 3.58
242 243 2.644676 GTTGCTTCCCTAATCCCTGTC 58.355 52.381 0.00 0.00 0.00 3.51
243 244 1.065418 CGTTGCTTCCCTAATCCCTGT 60.065 52.381 0.00 0.00 0.00 4.00
244 245 1.209504 TCGTTGCTTCCCTAATCCCTG 59.790 52.381 0.00 0.00 0.00 4.45
245 246 1.580059 TCGTTGCTTCCCTAATCCCT 58.420 50.000 0.00 0.00 0.00 4.20
246 247 2.289565 CTTCGTTGCTTCCCTAATCCC 58.710 52.381 0.00 0.00 0.00 3.85
247 248 2.987232 ACTTCGTTGCTTCCCTAATCC 58.013 47.619 0.00 0.00 0.00 3.01
248 249 3.550678 CGTACTTCGTTGCTTCCCTAATC 59.449 47.826 0.00 0.00 34.52 1.75
249 250 3.518590 CGTACTTCGTTGCTTCCCTAAT 58.481 45.455 0.00 0.00 34.52 1.73
250 251 2.927871 GCGTACTTCGTTGCTTCCCTAA 60.928 50.000 0.00 0.00 42.13 2.69
251 252 1.403249 GCGTACTTCGTTGCTTCCCTA 60.403 52.381 0.00 0.00 42.13 3.53
252 253 0.669625 GCGTACTTCGTTGCTTCCCT 60.670 55.000 0.00 0.00 42.13 4.20
253 254 0.947180 TGCGTACTTCGTTGCTTCCC 60.947 55.000 0.00 0.00 42.13 3.97
254 255 0.163146 GTGCGTACTTCGTTGCTTCC 59.837 55.000 0.00 0.00 42.13 3.46
255 256 0.856641 TGTGCGTACTTCGTTGCTTC 59.143 50.000 4.97 0.00 42.13 3.86
256 257 1.508632 ATGTGCGTACTTCGTTGCTT 58.491 45.000 4.97 0.00 42.13 3.91
257 258 1.990563 GTATGTGCGTACTTCGTTGCT 59.009 47.619 4.97 0.00 42.13 3.91
258 259 1.990563 AGTATGTGCGTACTTCGTTGC 59.009 47.619 4.97 0.00 42.13 4.17
259 260 2.597305 GGAGTATGTGCGTACTTCGTTG 59.403 50.000 4.97 0.00 42.13 4.10
260 261 2.416431 GGGAGTATGTGCGTACTTCGTT 60.416 50.000 4.97 0.00 42.13 3.85
261 262 1.133790 GGGAGTATGTGCGTACTTCGT 59.866 52.381 4.97 0.00 42.13 3.85
262 263 1.404391 AGGGAGTATGTGCGTACTTCG 59.596 52.381 4.97 0.00 43.12 3.79
263 264 2.223758 GGAGGGAGTATGTGCGTACTTC 60.224 54.545 4.97 3.83 35.14 3.01
264 265 1.755380 GGAGGGAGTATGTGCGTACTT 59.245 52.381 4.97 0.69 35.14 2.24
265 266 1.400737 GGAGGGAGTATGTGCGTACT 58.599 55.000 4.97 3.95 37.61 2.73
266 267 0.030369 CGGAGGGAGTATGTGCGTAC 59.970 60.000 0.00 0.00 0.00 3.67
267 268 0.394762 ACGGAGGGAGTATGTGCGTA 60.395 55.000 0.00 0.00 36.42 4.42
268 269 1.664321 GACGGAGGGAGTATGTGCGT 61.664 60.000 0.00 0.00 41.23 5.24
269 270 1.065928 GACGGAGGGAGTATGTGCG 59.934 63.158 0.00 0.00 0.00 5.34
270 271 1.442148 GGACGGAGGGAGTATGTGC 59.558 63.158 0.00 0.00 0.00 4.57
271 272 2.125178 GGGACGGAGGGAGTATGTG 58.875 63.158 0.00 0.00 0.00 3.21
272 273 4.701286 GGGACGGAGGGAGTATGT 57.299 61.111 0.00 0.00 0.00 2.29
283 284 8.725358 AAGTTGAGACTCTTATTTCGGGACGG 62.725 46.154 3.68 0.00 44.68 4.79
284 285 5.850250 AAGTTGAGACTCTTATTTCGGGACG 60.850 44.000 3.68 0.00 45.63 4.79
285 286 5.074584 AGTTGAGACTCTTATTTCGGGAC 57.925 43.478 3.68 0.00 0.00 4.46
286 287 5.740290 AAGTTGAGACTCTTATTTCGGGA 57.260 39.130 3.68 0.00 34.21 5.14
287 288 5.701290 ACAAAGTTGAGACTCTTATTTCGGG 59.299 40.000 3.68 0.00 34.21 5.14
288 289 6.787085 ACAAAGTTGAGACTCTTATTTCGG 57.213 37.500 3.68 0.00 34.21 4.30
289 290 8.522178 AGTACAAAGTTGAGACTCTTATTTCG 57.478 34.615 3.68 1.22 34.21 3.46
294 295 9.352191 AGAGTTAGTACAAAGTTGAGACTCTTA 57.648 33.333 3.68 0.00 38.42 2.10
295 296 8.240267 AGAGTTAGTACAAAGTTGAGACTCTT 57.760 34.615 3.68 0.00 38.42 2.85
296 297 7.826918 AGAGTTAGTACAAAGTTGAGACTCT 57.173 36.000 3.68 0.00 37.19 3.24
297 298 8.785946 ACTAGAGTTAGTACAAAGTTGAGACTC 58.214 37.037 0.00 0.00 38.35 3.36
298 299 8.694581 ACTAGAGTTAGTACAAAGTTGAGACT 57.305 34.615 0.00 3.77 38.35 3.24
323 324 7.707893 GTGTCTCAACCTTAGTACAACTTTGTA 59.292 37.037 0.00 0.00 42.35 2.41
324 325 6.537660 GTGTCTCAACCTTAGTACAACTTTGT 59.462 38.462 0.00 0.00 44.86 2.83
325 326 6.761714 AGTGTCTCAACCTTAGTACAACTTTG 59.238 38.462 0.00 0.00 0.00 2.77
326 327 6.885922 AGTGTCTCAACCTTAGTACAACTTT 58.114 36.000 0.00 0.00 0.00 2.66
327 328 6.481434 AGTGTCTCAACCTTAGTACAACTT 57.519 37.500 0.00 0.00 0.00 2.66
328 329 6.481434 AAGTGTCTCAACCTTAGTACAACT 57.519 37.500 0.00 0.00 0.00 3.16
329 330 8.828688 AATAAGTGTCTCAACCTTAGTACAAC 57.171 34.615 0.00 0.00 0.00 3.32
330 331 9.841295 AAAATAAGTGTCTCAACCTTAGTACAA 57.159 29.630 0.00 0.00 0.00 2.41
331 332 9.268268 CAAAATAAGTGTCTCAACCTTAGTACA 57.732 33.333 0.00 0.00 0.00 2.90
332 333 9.485206 TCAAAATAAGTGTCTCAACCTTAGTAC 57.515 33.333 0.00 0.00 0.00 2.73
333 334 9.706691 CTCAAAATAAGTGTCTCAACCTTAGTA 57.293 33.333 0.00 0.00 0.00 1.82
334 335 8.429641 TCTCAAAATAAGTGTCTCAACCTTAGT 58.570 33.333 0.00 0.00 0.00 2.24
335 336 8.713271 GTCTCAAAATAAGTGTCTCAACCTTAG 58.287 37.037 0.00 0.00 0.00 2.18
336 337 7.384115 CGTCTCAAAATAAGTGTCTCAACCTTA 59.616 37.037 0.00 0.00 0.00 2.69
337 338 6.202954 CGTCTCAAAATAAGTGTCTCAACCTT 59.797 38.462 0.00 0.00 0.00 3.50
338 339 5.696724 CGTCTCAAAATAAGTGTCTCAACCT 59.303 40.000 0.00 0.00 0.00 3.50
339 340 5.694910 TCGTCTCAAAATAAGTGTCTCAACC 59.305 40.000 0.00 0.00 0.00 3.77
340 341 6.764877 TCGTCTCAAAATAAGTGTCTCAAC 57.235 37.500 0.00 0.00 0.00 3.18
341 342 6.423905 CCTTCGTCTCAAAATAAGTGTCTCAA 59.576 38.462 0.00 0.00 0.00 3.02
342 343 5.926542 CCTTCGTCTCAAAATAAGTGTCTCA 59.073 40.000 0.00 0.00 0.00 3.27
343 344 5.348997 CCCTTCGTCTCAAAATAAGTGTCTC 59.651 44.000 0.00 0.00 0.00 3.36
344 345 5.011738 TCCCTTCGTCTCAAAATAAGTGTCT 59.988 40.000 0.00 0.00 0.00 3.41
345 346 5.235516 TCCCTTCGTCTCAAAATAAGTGTC 58.764 41.667 0.00 0.00 0.00 3.67
346 347 5.221661 ACTCCCTTCGTCTCAAAATAAGTGT 60.222 40.000 0.00 0.00 0.00 3.55
347 348 5.238583 ACTCCCTTCGTCTCAAAATAAGTG 58.761 41.667 0.00 0.00 0.00 3.16
348 349 5.485209 ACTCCCTTCGTCTCAAAATAAGT 57.515 39.130 0.00 0.00 0.00 2.24
349 350 9.197694 CATATACTCCCTTCGTCTCAAAATAAG 57.802 37.037 0.00 0.00 0.00 1.73
350 351 8.701895 ACATATACTCCCTTCGTCTCAAAATAA 58.298 33.333 0.00 0.00 0.00 1.40
351 352 8.246430 ACATATACTCCCTTCGTCTCAAAATA 57.754 34.615 0.00 0.00 0.00 1.40
352 353 7.125792 ACATATACTCCCTTCGTCTCAAAAT 57.874 36.000 0.00 0.00 0.00 1.82
353 354 6.540438 ACATATACTCCCTTCGTCTCAAAA 57.460 37.500 0.00 0.00 0.00 2.44
354 355 6.540438 AACATATACTCCCTTCGTCTCAAA 57.460 37.500 0.00 0.00 0.00 2.69
355 356 7.649533 TTAACATATACTCCCTTCGTCTCAA 57.350 36.000 0.00 0.00 0.00 3.02
356 357 7.649533 TTTAACATATACTCCCTTCGTCTCA 57.350 36.000 0.00 0.00 0.00 3.27
357 358 9.843334 CTATTTAACATATACTCCCTTCGTCTC 57.157 37.037 0.00 0.00 0.00 3.36
358 359 9.584008 TCTATTTAACATATACTCCCTTCGTCT 57.416 33.333 0.00 0.00 0.00 4.18
387 388 7.764443 TCAATTGGGTCAACGATTTTACAAAAA 59.236 29.630 5.42 0.00 0.00 1.94
388 389 7.265673 TCAATTGGGTCAACGATTTTACAAAA 58.734 30.769 5.42 0.00 0.00 2.44
389 390 6.806751 TCAATTGGGTCAACGATTTTACAAA 58.193 32.000 5.42 0.00 0.00 2.83
390 391 6.392625 TCAATTGGGTCAACGATTTTACAA 57.607 33.333 5.42 0.00 0.00 2.41
391 392 6.392625 TTCAATTGGGTCAACGATTTTACA 57.607 33.333 5.42 0.00 0.00 2.41
392 393 9.233232 GATATTCAATTGGGTCAACGATTTTAC 57.767 33.333 5.42 0.00 0.00 2.01
393 394 8.961634 TGATATTCAATTGGGTCAACGATTTTA 58.038 29.630 5.42 0.00 0.00 1.52
394 395 7.835822 TGATATTCAATTGGGTCAACGATTTT 58.164 30.769 5.42 0.00 0.00 1.82
395 396 7.403312 TGATATTCAATTGGGTCAACGATTT 57.597 32.000 5.42 0.00 0.00 2.17
396 397 7.068593 ACATGATATTCAATTGGGTCAACGATT 59.931 33.333 5.42 0.00 0.00 3.34
397 398 6.547141 ACATGATATTCAATTGGGTCAACGAT 59.453 34.615 5.42 0.00 0.00 3.73
398 399 5.885352 ACATGATATTCAATTGGGTCAACGA 59.115 36.000 5.42 0.00 0.00 3.85
399 400 6.135290 ACATGATATTCAATTGGGTCAACG 57.865 37.500 5.42 4.28 0.00 4.10
400 401 9.868277 TTTTACATGATATTCAATTGGGTCAAC 57.132 29.630 5.42 0.00 0.00 3.18
418 419 4.104776 GGGAACACGCATGATTTTACATG 58.895 43.478 0.00 0.00 46.96 3.21
419 420 4.016444 AGGGAACACGCATGATTTTACAT 58.984 39.130 0.00 0.00 0.00 2.29
420 421 3.417101 AGGGAACACGCATGATTTTACA 58.583 40.909 0.00 0.00 0.00 2.41
421 422 4.165779 CAAGGGAACACGCATGATTTTAC 58.834 43.478 0.00 0.00 0.00 2.01
422 423 3.192422 CCAAGGGAACACGCATGATTTTA 59.808 43.478 0.00 0.00 0.00 1.52
423 424 2.029110 CCAAGGGAACACGCATGATTTT 60.029 45.455 0.00 0.00 0.00 1.82
424 425 1.545582 CCAAGGGAACACGCATGATTT 59.454 47.619 0.00 0.00 0.00 2.17
425 426 1.176527 CCAAGGGAACACGCATGATT 58.823 50.000 0.00 0.00 0.00 2.57
426 427 0.038166 ACCAAGGGAACACGCATGAT 59.962 50.000 0.00 0.00 0.00 2.45
427 428 0.888736 CACCAAGGGAACACGCATGA 60.889 55.000 0.00 0.00 0.00 3.07
428 429 1.580942 CACCAAGGGAACACGCATG 59.419 57.895 0.00 0.00 0.00 4.06
429 430 2.268076 GCACCAAGGGAACACGCAT 61.268 57.895 0.00 0.00 0.00 4.73
430 431 2.904866 GCACCAAGGGAACACGCA 60.905 61.111 0.00 0.00 0.00 5.24
431 432 2.904866 TGCACCAAGGGAACACGC 60.905 61.111 0.00 0.00 0.00 5.34
432 433 2.260869 CCTGCACCAAGGGAACACG 61.261 63.158 0.00 0.00 33.28 4.49
433 434 2.564721 GCCTGCACCAAGGGAACAC 61.565 63.158 0.00 0.00 37.84 3.32
434 435 2.203480 GCCTGCACCAAGGGAACA 60.203 61.111 0.00 0.00 37.84 3.18
435 436 2.203480 TGCCTGCACCAAGGGAAC 60.203 61.111 0.00 0.00 34.26 3.62
436 437 2.115910 CTGCCTGCACCAAGGGAA 59.884 61.111 0.00 0.00 37.20 3.97
437 438 2.766925 AACTGCCTGCACCAAGGGA 61.767 57.895 0.00 0.00 37.84 4.20
438 439 2.203538 AACTGCCTGCACCAAGGG 60.204 61.111 0.00 0.00 37.84 3.95
439 440 3.045142 CAACTGCCTGCACCAAGG 58.955 61.111 0.00 0.00 40.63 3.61
440 441 2.337532 GCAACTGCCTGCACCAAG 59.662 61.111 0.00 0.00 42.17 3.61
446 447 1.736645 CTGCAATGCAACTGCCTGC 60.737 57.895 18.45 15.38 38.41 4.85
447 448 0.388134 GACTGCAATGCAACTGCCTG 60.388 55.000 18.45 14.11 38.41 4.85
448 449 0.538977 AGACTGCAATGCAACTGCCT 60.539 50.000 18.45 8.18 38.41 4.75
449 450 0.388134 CAGACTGCAATGCAACTGCC 60.388 55.000 21.82 6.31 38.41 4.85
450 451 0.313043 ACAGACTGCAATGCAACTGC 59.687 50.000 28.36 15.36 38.41 4.40
451 452 1.399343 CGACAGACTGCAATGCAACTG 60.399 52.381 27.47 27.47 38.41 3.16
452 453 0.870393 CGACAGACTGCAATGCAACT 59.130 50.000 9.92 9.00 38.41 3.16
453 454 0.110056 CCGACAGACTGCAATGCAAC 60.110 55.000 9.92 6.67 38.41 4.17
454 455 0.534877 ACCGACAGACTGCAATGCAA 60.535 50.000 9.92 0.00 38.41 4.08
455 456 1.071299 ACCGACAGACTGCAATGCA 59.929 52.632 7.99 7.99 36.92 3.96
456 457 1.499056 CACCGACAGACTGCAATGC 59.501 57.895 1.25 0.00 0.00 3.56
457 458 1.499056 GCACCGACAGACTGCAATG 59.501 57.895 1.25 0.00 0.00 2.82
458 459 1.672356 GGCACCGACAGACTGCAAT 60.672 57.895 1.25 0.00 32.20 3.56
459 460 2.280797 GGCACCGACAGACTGCAA 60.281 61.111 1.25 0.00 32.20 4.08
460 461 4.662961 CGGCACCGACAGACTGCA 62.663 66.667 2.01 0.00 42.83 4.41
461 462 4.357947 TCGGCACCGACAGACTGC 62.358 66.667 7.89 0.00 44.01 4.40
477 478 1.352156 CTAAAGCAGCCACCGACGTC 61.352 60.000 5.18 5.18 0.00 4.34
478 479 1.374252 CTAAAGCAGCCACCGACGT 60.374 57.895 0.00 0.00 0.00 4.34
479 480 2.100631 CCTAAAGCAGCCACCGACG 61.101 63.158 0.00 0.00 0.00 5.12
480 481 2.399356 GCCTAAAGCAGCCACCGAC 61.399 63.158 0.00 0.00 42.97 4.79
481 482 2.046314 GCCTAAAGCAGCCACCGA 60.046 61.111 0.00 0.00 42.97 4.69
482 483 3.499737 CGCCTAAAGCAGCCACCG 61.500 66.667 0.00 0.00 44.04 4.94
483 484 3.134127 CCGCCTAAAGCAGCCACC 61.134 66.667 0.00 0.00 44.04 4.61
484 485 3.815396 GCCGCCTAAAGCAGCCAC 61.815 66.667 0.00 0.00 44.04 5.01
487 488 2.897350 ATCGCCGCCTAAAGCAGC 60.897 61.111 0.00 0.00 44.04 5.25
488 489 2.537560 CCATCGCCGCCTAAAGCAG 61.538 63.158 0.00 0.00 44.04 4.24
489 490 2.513666 CCATCGCCGCCTAAAGCA 60.514 61.111 0.00 0.00 44.04 3.91
490 491 3.953887 GCCATCGCCGCCTAAAGC 61.954 66.667 0.00 0.00 38.52 3.51
523 524 2.749839 TACTGTTGCGCCATGGCC 60.750 61.111 30.79 22.58 37.98 5.36
524 525 2.485122 GTACTGTTGCGCCATGGC 59.515 61.111 27.67 27.67 37.85 4.40
525 526 2.032634 ACGTACTGTTGCGCCATGG 61.033 57.895 7.63 7.63 33.50 3.66
526 527 1.132436 CACGTACTGTTGCGCCATG 59.868 57.895 4.18 0.00 33.50 3.66
527 528 2.032634 CCACGTACTGTTGCGCCAT 61.033 57.895 4.18 0.00 33.50 4.40
528 529 2.663520 CCACGTACTGTTGCGCCA 60.664 61.111 4.18 0.00 33.50 5.69
529 530 4.084888 GCCACGTACTGTTGCGCC 62.085 66.667 4.18 0.00 33.50 6.53
530 531 2.604174 AAGCCACGTACTGTTGCGC 61.604 57.895 0.00 0.00 43.71 6.09
531 532 1.204062 CAAGCCACGTACTGTTGCG 59.796 57.895 0.00 3.54 43.71 4.85
532 533 1.574428 CCAAGCCACGTACTGTTGC 59.426 57.895 0.00 6.01 39.46 4.17
533 534 1.574428 GCCAAGCCACGTACTGTTG 59.426 57.895 0.00 0.00 0.00 3.33
534 535 1.959226 CGCCAAGCCACGTACTGTT 60.959 57.895 0.00 0.00 0.00 3.16
535 536 2.357034 CGCCAAGCCACGTACTGT 60.357 61.111 0.00 0.00 0.00 3.55
536 537 3.118454 CCGCCAAGCCACGTACTG 61.118 66.667 0.00 0.00 0.00 2.74
566 567 4.873810 TTGCCCGCACACTGCAGT 62.874 61.111 15.25 15.25 45.36 4.40
567 568 1.585267 TATTTGCCCGCACACTGCAG 61.585 55.000 13.48 13.48 45.36 4.41
568 569 1.585267 CTATTTGCCCGCACACTGCA 61.585 55.000 0.00 0.00 45.36 4.41
569 570 1.137404 CTATTTGCCCGCACACTGC 59.863 57.895 0.00 0.00 40.69 4.40
570 571 1.137404 GCTATTTGCCCGCACACTG 59.863 57.895 0.00 0.00 35.15 3.66
571 572 1.002134 AGCTATTTGCCCGCACACT 60.002 52.632 0.00 0.00 44.23 3.55
572 573 1.429423 GAGCTATTTGCCCGCACAC 59.571 57.895 0.00 0.00 44.23 3.82
573 574 1.748879 GGAGCTATTTGCCCGCACA 60.749 57.895 0.00 0.00 44.23 4.57
574 575 0.179056 TAGGAGCTATTTGCCCGCAC 60.179 55.000 0.00 0.00 44.23 5.34
575 576 0.764890 ATAGGAGCTATTTGCCCGCA 59.235 50.000 0.00 0.00 44.23 5.69
576 577 1.160137 CATAGGAGCTATTTGCCCGC 58.840 55.000 0.00 0.00 44.23 6.13
1358 1867 3.933722 CGAGCTCCCCGGATGCAT 61.934 66.667 8.47 0.00 0.00 3.96
1778 2363 4.193865 ACGAACCTTTTTCTCCTTTTCGA 58.806 39.130 7.73 0.00 38.15 3.71
1779 2364 4.524749 GACGAACCTTTTTCTCCTTTTCG 58.475 43.478 0.00 0.00 40.07 3.46
1788 2374 3.691498 CAACTGTGGACGAACCTTTTTC 58.309 45.455 0.00 0.00 39.86 2.29
1897 2521 1.290203 ATCGATGTCAATGACCGTGC 58.710 50.000 11.24 0.00 0.00 5.34
2450 3231 5.066968 TGATGAGATGCGTAAGTGTTGTA 57.933 39.130 0.00 0.00 41.68 2.41
2466 3247 5.303165 TGCTAATTATCTGGTGCTGATGAG 58.697 41.667 0.00 0.00 0.00 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.