Multiple sequence alignment - TraesCS7A01G560000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G560000 chr7A 100.000 2456 0 0 1 2456 731881428 731883883 0.000000e+00 4536.0
1 TraesCS7A01G560000 chr7D 93.843 877 48 4 351 1222 634440926 634440051 0.000000e+00 1315.0
2 TraesCS7A01G560000 chr7D 94.069 725 23 7 1705 2427 634439522 634438816 0.000000e+00 1083.0
3 TraesCS7A01G560000 chr7D 88.158 456 27 12 1258 1706 634440051 634439616 3.620000e-143 518.0
4 TraesCS7A01G560000 chr7B 90.847 732 38 9 814 1541 741668250 741668956 0.000000e+00 953.0
5 TraesCS7A01G560000 chr7B 91.262 103 9 0 2227 2329 741683032 741683134 9.160000e-30 141.0
6 TraesCS7A01G560000 chr6D 96.034 353 13 1 1 352 341193172 341192820 7.620000e-160 573.0
7 TraesCS7A01G560000 chr6D 80.226 354 56 9 858 1210 435072680 435073020 1.130000e-63 254.0
8 TraesCS7A01G560000 chr1A 92.000 350 27 1 1 349 486963845 486963496 7.890000e-135 490.0
9 TraesCS7A01G560000 chr4B 84.831 356 53 1 1 355 665978693 665979048 8.350000e-95 357.0
10 TraesCS7A01G560000 chr6B 80.055 361 53 13 858 1210 658233811 658234160 1.460000e-62 250.0
11 TraesCS7A01G560000 chr6A 86.047 86 11 1 1375 1460 581983500 581983584 9.350000e-15 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G560000 chr7A 731881428 731883883 2455 False 4536 4536 100.000000 1 2456 1 chr7A.!!$F1 2455
1 TraesCS7A01G560000 chr7D 634438816 634440926 2110 True 972 1315 92.023333 351 2427 3 chr7D.!!$R1 2076
2 TraesCS7A01G560000 chr7B 741668250 741668956 706 False 953 953 90.847000 814 1541 1 chr7B.!!$F1 727

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
73 74 0.029834 CACAGTTGCTGCAGGTTCAC 59.970 55.0 17.12 0.0 34.37 3.18 F
86 87 0.033504 GGTTCACTCGTGCAGAAGGA 59.966 55.0 0.00 0.0 0.00 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1393 1403 0.034059 CTCTTGTTCTCACCGGTGCT 59.966 55.0 30.25 0.0 0.00 4.40 R
1889 1999 0.254178 GCTTCCTGCCTTCCTCATCA 59.746 55.0 0.00 0.0 35.15 3.07 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 3.951775 GGAGCTATCCACACATCTAGG 57.048 52.381 0.00 0.00 45.87 3.02
25 26 3.501349 GGAGCTATCCACACATCTAGGA 58.499 50.000 0.00 0.00 45.87 2.94
26 27 3.509575 GGAGCTATCCACACATCTAGGAG 59.490 52.174 0.00 0.00 45.87 3.69
27 28 2.896685 AGCTATCCACACATCTAGGAGC 59.103 50.000 0.00 0.00 34.40 4.70
28 29 2.352225 GCTATCCACACATCTAGGAGCG 60.352 54.545 0.00 0.00 34.40 5.03
29 30 2.073252 ATCCACACATCTAGGAGCGA 57.927 50.000 0.00 0.00 34.40 4.93
30 31 2.073252 TCCACACATCTAGGAGCGAT 57.927 50.000 0.00 0.00 0.00 4.58
31 32 1.957177 TCCACACATCTAGGAGCGATC 59.043 52.381 0.00 0.00 0.00 3.69
32 33 1.683385 CCACACATCTAGGAGCGATCA 59.317 52.381 1.84 0.00 0.00 2.92
33 34 2.288091 CCACACATCTAGGAGCGATCAG 60.288 54.545 1.84 0.00 0.00 2.90
34 35 1.959985 ACACATCTAGGAGCGATCAGG 59.040 52.381 1.84 0.00 0.00 3.86
35 36 2.234143 CACATCTAGGAGCGATCAGGA 58.766 52.381 1.84 0.00 0.00 3.86
36 37 2.824936 CACATCTAGGAGCGATCAGGAT 59.175 50.000 1.84 0.00 0.00 3.24
37 38 4.013050 CACATCTAGGAGCGATCAGGATA 58.987 47.826 1.84 0.00 0.00 2.59
38 39 4.644234 CACATCTAGGAGCGATCAGGATAT 59.356 45.833 1.84 0.00 0.00 1.63
39 40 4.644234 ACATCTAGGAGCGATCAGGATATG 59.356 45.833 1.84 2.04 0.00 1.78
40 41 3.020274 TCTAGGAGCGATCAGGATATGC 58.980 50.000 1.84 0.00 0.00 3.14
41 42 1.637338 AGGAGCGATCAGGATATGCA 58.363 50.000 1.84 0.00 0.00 3.96
42 43 2.186243 AGGAGCGATCAGGATATGCAT 58.814 47.619 3.79 3.79 0.00 3.96
43 44 3.369175 AGGAGCGATCAGGATATGCATA 58.631 45.455 9.27 9.27 0.00 3.14
44 45 3.384146 AGGAGCGATCAGGATATGCATAG 59.616 47.826 12.79 0.00 0.00 2.23
45 46 3.382865 GGAGCGATCAGGATATGCATAGA 59.617 47.826 12.79 4.26 0.00 1.98
46 47 4.142071 GGAGCGATCAGGATATGCATAGAA 60.142 45.833 12.79 0.00 0.00 2.10
47 48 5.411831 AGCGATCAGGATATGCATAGAAA 57.588 39.130 12.79 0.00 0.00 2.52
48 49 5.174395 AGCGATCAGGATATGCATAGAAAC 58.826 41.667 12.79 2.47 0.00 2.78
49 50 4.032217 GCGATCAGGATATGCATAGAAACG 59.968 45.833 12.79 13.38 0.00 3.60
50 51 4.564372 CGATCAGGATATGCATAGAAACGG 59.436 45.833 12.79 3.55 0.00 4.44
51 52 5.622233 CGATCAGGATATGCATAGAAACGGA 60.622 44.000 12.79 8.40 0.00 4.69
52 53 4.883083 TCAGGATATGCATAGAAACGGAC 58.117 43.478 12.79 0.00 0.00 4.79
53 54 4.588951 TCAGGATATGCATAGAAACGGACT 59.411 41.667 12.79 0.00 0.00 3.85
54 55 4.926238 CAGGATATGCATAGAAACGGACTC 59.074 45.833 12.79 1.35 0.00 3.36
55 56 4.588951 AGGATATGCATAGAAACGGACTCA 59.411 41.667 12.79 0.00 0.00 3.41
56 57 4.686554 GGATATGCATAGAAACGGACTCAC 59.313 45.833 12.79 0.00 0.00 3.51
57 58 3.610040 ATGCATAGAAACGGACTCACA 57.390 42.857 0.00 0.00 0.00 3.58
58 59 2.959516 TGCATAGAAACGGACTCACAG 58.040 47.619 0.00 0.00 0.00 3.66
59 60 2.299013 TGCATAGAAACGGACTCACAGT 59.701 45.455 0.00 0.00 0.00 3.55
60 61 3.244078 TGCATAGAAACGGACTCACAGTT 60.244 43.478 0.00 0.00 38.43 3.16
61 62 3.123621 GCATAGAAACGGACTCACAGTTG 59.876 47.826 0.00 0.00 37.04 3.16
62 63 1.583054 AGAAACGGACTCACAGTTGC 58.417 50.000 0.00 0.00 37.04 4.17
63 64 1.139058 AGAAACGGACTCACAGTTGCT 59.861 47.619 0.00 0.00 37.65 3.91
64 65 1.261619 GAAACGGACTCACAGTTGCTG 59.738 52.381 0.00 0.00 37.04 4.41
65 66 1.160329 AACGGACTCACAGTTGCTGC 61.160 55.000 0.00 0.00 35.76 5.25
66 67 1.595109 CGGACTCACAGTTGCTGCA 60.595 57.895 0.00 0.00 34.37 4.41
67 68 1.563435 CGGACTCACAGTTGCTGCAG 61.563 60.000 10.11 10.11 34.37 4.41
68 69 1.233285 GGACTCACAGTTGCTGCAGG 61.233 60.000 17.12 0.00 34.37 4.85
69 70 0.533755 GACTCACAGTTGCTGCAGGT 60.534 55.000 17.12 0.62 34.37 4.00
70 71 0.107017 ACTCACAGTTGCTGCAGGTT 60.107 50.000 17.12 0.00 34.37 3.50
71 72 0.590195 CTCACAGTTGCTGCAGGTTC 59.410 55.000 17.12 0.00 34.37 3.62
72 73 0.107263 TCACAGTTGCTGCAGGTTCA 60.107 50.000 17.12 1.56 34.37 3.18
73 74 0.029834 CACAGTTGCTGCAGGTTCAC 59.970 55.000 17.12 0.00 34.37 3.18
74 75 0.107017 ACAGTTGCTGCAGGTTCACT 60.107 50.000 17.12 0.00 34.37 3.41
75 76 0.590195 CAGTTGCTGCAGGTTCACTC 59.410 55.000 17.12 0.00 0.00 3.51
76 77 0.882042 AGTTGCTGCAGGTTCACTCG 60.882 55.000 17.12 0.00 0.00 4.18
77 78 1.146041 TTGCTGCAGGTTCACTCGT 59.854 52.632 17.12 0.00 0.00 4.18
78 79 1.159713 TTGCTGCAGGTTCACTCGTG 61.160 55.000 17.12 0.00 0.00 4.35
79 80 2.959357 GCTGCAGGTTCACTCGTGC 61.959 63.158 17.12 4.75 45.54 5.34
81 82 3.248029 GCAGGTTCACTCGTGCAG 58.752 61.111 6.51 0.00 44.96 4.41
82 83 1.300931 GCAGGTTCACTCGTGCAGA 60.301 57.895 6.51 0.00 44.96 4.26
83 84 0.880278 GCAGGTTCACTCGTGCAGAA 60.880 55.000 6.51 0.00 44.96 3.02
84 85 1.143305 CAGGTTCACTCGTGCAGAAG 58.857 55.000 0.00 0.00 0.00 2.85
85 86 0.034059 AGGTTCACTCGTGCAGAAGG 59.966 55.000 0.00 0.00 0.00 3.46
86 87 0.033504 GGTTCACTCGTGCAGAAGGA 59.966 55.000 0.00 0.00 0.00 3.36
87 88 1.423395 GTTCACTCGTGCAGAAGGAG 58.577 55.000 0.00 0.00 44.72 3.69
88 89 0.319900 TTCACTCGTGCAGAAGGAGC 60.320 55.000 0.00 0.00 43.30 4.70
89 90 1.739562 CACTCGTGCAGAAGGAGCC 60.740 63.158 0.00 0.00 43.30 4.70
90 91 2.210013 ACTCGTGCAGAAGGAGCCA 61.210 57.895 0.00 0.00 43.30 4.75
91 92 1.004560 CTCGTGCAGAAGGAGCCAA 60.005 57.895 0.00 0.00 34.23 4.52
92 93 1.004560 TCGTGCAGAAGGAGCCAAG 60.005 57.895 0.00 0.00 0.00 3.61
93 94 2.684843 CGTGCAGAAGGAGCCAAGC 61.685 63.158 0.00 0.00 0.00 4.01
94 95 1.303155 GTGCAGAAGGAGCCAAGCT 60.303 57.895 0.00 0.00 43.88 3.74
95 96 0.892814 GTGCAGAAGGAGCCAAGCTT 60.893 55.000 0.00 0.00 39.88 3.74
96 97 0.607489 TGCAGAAGGAGCCAAGCTTC 60.607 55.000 0.00 0.00 39.88 3.86
97 98 0.607489 GCAGAAGGAGCCAAGCTTCA 60.607 55.000 0.00 0.00 39.88 3.02
98 99 1.163554 CAGAAGGAGCCAAGCTTCAC 58.836 55.000 0.00 0.00 39.88 3.18
99 100 0.321122 AGAAGGAGCCAAGCTTCACG 60.321 55.000 0.00 0.00 39.88 4.35
100 101 1.301677 GAAGGAGCCAAGCTTCACGG 61.302 60.000 0.00 0.00 39.88 4.94
101 102 3.435186 GGAGCCAAGCTTCACGGC 61.435 66.667 16.55 16.55 46.62 5.68
104 105 2.740826 GCCAAGCTTCACGGCGTA 60.741 61.111 14.22 0.00 35.79 4.42
105 106 2.106683 GCCAAGCTTCACGGCGTAT 61.107 57.895 14.22 0.00 35.79 3.06
106 107 1.715585 CCAAGCTTCACGGCGTATG 59.284 57.895 14.22 6.99 37.29 2.39
107 108 1.060937 CAAGCTTCACGGCGTATGC 59.939 57.895 14.22 17.09 41.71 3.14
108 109 1.375396 AAGCTTCACGGCGTATGCA 60.375 52.632 24.79 0.00 45.35 3.96
109 110 0.744414 AAGCTTCACGGCGTATGCAT 60.744 50.000 24.79 15.23 45.35 3.96
110 111 1.154205 AGCTTCACGGCGTATGCATC 61.154 55.000 24.79 9.90 45.35 3.91
111 112 1.559814 CTTCACGGCGTATGCATCG 59.440 57.895 14.22 8.36 45.35 3.84
112 113 0.869880 CTTCACGGCGTATGCATCGA 60.870 55.000 14.22 0.00 45.35 3.59
113 114 0.249280 TTCACGGCGTATGCATCGAT 60.249 50.000 14.22 0.00 45.35 3.59
114 115 0.663269 TCACGGCGTATGCATCGATC 60.663 55.000 14.22 10.55 45.35 3.69
115 116 1.372997 ACGGCGTATGCATCGATCC 60.373 57.895 12.58 11.64 45.35 3.36
116 117 1.080501 CGGCGTATGCATCGATCCT 60.081 57.895 18.54 0.00 45.35 3.24
117 118 1.347097 CGGCGTATGCATCGATCCTG 61.347 60.000 18.54 6.11 45.35 3.86
118 119 1.016130 GGCGTATGCATCGATCCTGG 61.016 60.000 18.54 0.00 45.35 4.45
119 120 0.038251 GCGTATGCATCGATCCTGGA 60.038 55.000 18.54 0.00 42.15 3.86
120 121 1.605457 GCGTATGCATCGATCCTGGAA 60.605 52.381 18.54 0.00 42.15 3.53
121 122 2.332104 CGTATGCATCGATCCTGGAAG 58.668 52.381 0.19 0.00 0.00 3.46
122 123 2.029918 CGTATGCATCGATCCTGGAAGA 60.030 50.000 0.19 3.93 34.07 2.87
123 124 3.367806 CGTATGCATCGATCCTGGAAGAT 60.368 47.826 0.19 6.35 34.07 2.40
124 125 2.827800 TGCATCGATCCTGGAAGATC 57.172 50.000 13.08 9.82 39.47 2.75
125 126 2.323599 TGCATCGATCCTGGAAGATCT 58.676 47.619 13.08 0.00 40.50 2.75
126 127 2.036862 TGCATCGATCCTGGAAGATCTG 59.963 50.000 13.08 7.92 40.50 2.90
127 128 2.298446 GCATCGATCCTGGAAGATCTGA 59.702 50.000 13.08 4.62 40.50 3.27
128 129 3.244009 GCATCGATCCTGGAAGATCTGAA 60.244 47.826 13.08 0.00 40.50 3.02
129 130 4.558178 CATCGATCCTGGAAGATCTGAAG 58.442 47.826 13.08 0.00 40.50 3.02
130 131 2.961741 TCGATCCTGGAAGATCTGAAGG 59.038 50.000 0.00 10.91 40.50 3.46
131 132 2.697751 CGATCCTGGAAGATCTGAAGGT 59.302 50.000 14.94 6.15 40.50 3.50
132 133 3.243704 CGATCCTGGAAGATCTGAAGGTC 60.244 52.174 14.94 11.65 40.50 3.85
133 134 2.472029 TCCTGGAAGATCTGAAGGTCC 58.528 52.381 14.94 10.05 34.07 4.46
134 135 2.191400 CCTGGAAGATCTGAAGGTCCA 58.809 52.381 11.69 11.69 36.90 4.02
135 136 2.573462 CCTGGAAGATCTGAAGGTCCAA 59.427 50.000 12.96 0.33 37.90 3.53
136 137 3.009473 CCTGGAAGATCTGAAGGTCCAAA 59.991 47.826 12.96 0.00 37.90 3.28
137 138 4.324874 CCTGGAAGATCTGAAGGTCCAAAT 60.325 45.833 12.96 0.00 37.90 2.32
138 139 4.592942 TGGAAGATCTGAAGGTCCAAATG 58.407 43.478 10.13 0.00 35.45 2.32
139 140 4.289410 TGGAAGATCTGAAGGTCCAAATGA 59.711 41.667 10.13 0.00 35.45 2.57
140 141 4.880696 GGAAGATCTGAAGGTCCAAATGAG 59.119 45.833 0.00 0.00 0.00 2.90
141 142 4.500499 AGATCTGAAGGTCCAAATGAGG 57.500 45.455 0.00 0.00 0.00 3.86
142 143 2.496899 TCTGAAGGTCCAAATGAGGC 57.503 50.000 0.00 0.00 0.00 4.70
143 144 1.988107 TCTGAAGGTCCAAATGAGGCT 59.012 47.619 0.00 0.00 0.00 4.58
144 145 3.181329 TCTGAAGGTCCAAATGAGGCTA 58.819 45.455 0.00 0.00 0.00 3.93
145 146 3.782523 TCTGAAGGTCCAAATGAGGCTAT 59.217 43.478 0.00 0.00 0.00 2.97
146 147 3.881688 CTGAAGGTCCAAATGAGGCTATG 59.118 47.826 0.00 0.00 0.00 2.23
147 148 3.217626 GAAGGTCCAAATGAGGCTATGG 58.782 50.000 0.00 0.00 0.00 2.74
148 149 2.208872 AGGTCCAAATGAGGCTATGGT 58.791 47.619 7.67 0.00 34.50 3.55
149 150 2.582636 AGGTCCAAATGAGGCTATGGTT 59.417 45.455 7.67 0.00 34.50 3.67
150 151 2.952310 GGTCCAAATGAGGCTATGGTTC 59.048 50.000 7.67 4.03 34.50 3.62
151 152 3.372025 GGTCCAAATGAGGCTATGGTTCT 60.372 47.826 7.67 0.00 34.50 3.01
152 153 3.879892 GTCCAAATGAGGCTATGGTTCTC 59.120 47.826 7.67 0.00 34.50 2.87
153 154 3.523157 TCCAAATGAGGCTATGGTTCTCA 59.477 43.478 6.70 6.70 41.09 3.27
154 155 4.018506 TCCAAATGAGGCTATGGTTCTCAA 60.019 41.667 7.93 0.00 40.37 3.02
155 156 4.706476 CCAAATGAGGCTATGGTTCTCAAA 59.294 41.667 7.93 0.00 40.37 2.69
156 157 5.185635 CCAAATGAGGCTATGGTTCTCAAAA 59.814 40.000 7.93 0.00 40.37 2.44
157 158 6.127253 CCAAATGAGGCTATGGTTCTCAAAAT 60.127 38.462 7.93 0.00 40.37 1.82
158 159 6.461110 AATGAGGCTATGGTTCTCAAAATG 57.539 37.500 7.93 0.00 40.37 2.32
159 160 4.922206 TGAGGCTATGGTTCTCAAAATGT 58.078 39.130 0.00 0.00 34.97 2.71
160 161 4.701651 TGAGGCTATGGTTCTCAAAATGTG 59.298 41.667 0.00 0.00 34.97 3.21
161 162 4.922206 AGGCTATGGTTCTCAAAATGTGA 58.078 39.130 0.00 0.00 34.17 3.58
162 163 5.324409 AGGCTATGGTTCTCAAAATGTGAA 58.676 37.500 0.00 0.00 35.22 3.18
163 164 5.416952 AGGCTATGGTTCTCAAAATGTGAAG 59.583 40.000 0.00 0.00 35.22 3.02
164 165 5.183904 GGCTATGGTTCTCAAAATGTGAAGT 59.816 40.000 0.00 0.00 35.22 3.01
165 166 6.294731 GGCTATGGTTCTCAAAATGTGAAGTT 60.295 38.462 0.00 0.00 35.22 2.66
166 167 6.803807 GCTATGGTTCTCAAAATGTGAAGTTC 59.196 38.462 0.00 0.00 35.22 3.01
167 168 6.966534 ATGGTTCTCAAAATGTGAAGTTCT 57.033 33.333 4.17 0.00 35.22 3.01
168 169 6.773976 TGGTTCTCAAAATGTGAAGTTCTT 57.226 33.333 4.17 0.00 35.22 2.52
169 170 6.563422 TGGTTCTCAAAATGTGAAGTTCTTG 58.437 36.000 4.17 0.14 35.22 3.02
170 171 5.460091 GGTTCTCAAAATGTGAAGTTCTTGC 59.540 40.000 4.17 0.00 35.22 4.01
171 172 6.268566 GTTCTCAAAATGTGAAGTTCTTGCT 58.731 36.000 4.17 0.00 35.22 3.91
172 173 6.455360 TCTCAAAATGTGAAGTTCTTGCTT 57.545 33.333 4.17 0.00 35.22 3.91
173 174 6.267817 TCTCAAAATGTGAAGTTCTTGCTTG 58.732 36.000 4.17 2.42 35.22 4.01
174 175 5.964758 TCAAAATGTGAAGTTCTTGCTTGT 58.035 33.333 4.17 0.00 31.51 3.16
175 176 7.066887 TCTCAAAATGTGAAGTTCTTGCTTGTA 59.933 33.333 4.17 0.00 35.22 2.41
176 177 7.195646 TCAAAATGTGAAGTTCTTGCTTGTAG 58.804 34.615 4.17 0.00 31.51 2.74
177 178 6.942532 AAATGTGAAGTTCTTGCTTGTAGA 57.057 33.333 4.17 0.00 0.00 2.59
178 179 6.942532 AATGTGAAGTTCTTGCTTGTAGAA 57.057 33.333 4.17 0.00 0.00 2.10
179 180 5.991328 TGTGAAGTTCTTGCTTGTAGAAG 57.009 39.130 4.17 0.00 32.60 2.85
180 181 5.670485 TGTGAAGTTCTTGCTTGTAGAAGA 58.330 37.500 3.33 0.00 32.60 2.87
181 182 5.755375 TGTGAAGTTCTTGCTTGTAGAAGAG 59.245 40.000 3.33 0.00 32.60 2.85
182 183 5.986135 GTGAAGTTCTTGCTTGTAGAAGAGA 59.014 40.000 3.33 0.00 32.60 3.10
183 184 5.986135 TGAAGTTCTTGCTTGTAGAAGAGAC 59.014 40.000 3.33 0.00 32.60 3.36
184 185 4.551388 AGTTCTTGCTTGTAGAAGAGACG 58.449 43.478 3.33 0.00 32.60 4.18
185 186 2.947852 TCTTGCTTGTAGAAGAGACGC 58.052 47.619 3.33 0.00 0.00 5.19
186 187 1.996191 CTTGCTTGTAGAAGAGACGCC 59.004 52.381 3.33 0.00 0.00 5.68
187 188 0.966179 TGCTTGTAGAAGAGACGCCA 59.034 50.000 3.33 0.00 0.00 5.69
188 189 1.343142 TGCTTGTAGAAGAGACGCCAA 59.657 47.619 3.33 0.00 0.00 4.52
189 190 1.727335 GCTTGTAGAAGAGACGCCAAC 59.273 52.381 3.33 0.00 0.00 3.77
190 191 2.338500 CTTGTAGAAGAGACGCCAACC 58.662 52.381 0.00 0.00 0.00 3.77
191 192 0.242825 TGTAGAAGAGACGCCAACCG 59.757 55.000 0.00 0.00 44.21 4.44
209 210 3.112075 TGCTGCGCACGAACTAGC 61.112 61.111 5.66 7.40 31.71 3.42
210 211 2.811317 GCTGCGCACGAACTAGCT 60.811 61.111 5.66 0.00 0.00 3.32
211 212 1.516386 GCTGCGCACGAACTAGCTA 60.516 57.895 5.66 0.00 0.00 3.32
212 213 1.076533 GCTGCGCACGAACTAGCTAA 61.077 55.000 5.66 0.00 0.00 3.09
213 214 0.917259 CTGCGCACGAACTAGCTAAG 59.083 55.000 5.66 0.00 0.00 2.18
214 215 1.076533 TGCGCACGAACTAGCTAAGC 61.077 55.000 5.66 0.00 0.00 3.09
215 216 0.802607 GCGCACGAACTAGCTAAGCT 60.803 55.000 0.30 0.00 43.41 3.74
216 217 1.630148 CGCACGAACTAGCTAAGCTT 58.370 50.000 3.48 3.48 40.44 3.74
217 218 1.321743 CGCACGAACTAGCTAAGCTTG 59.678 52.381 9.86 0.01 40.44 4.01
218 219 1.661112 GCACGAACTAGCTAAGCTTGG 59.339 52.381 9.86 7.48 40.44 3.61
219 220 1.661112 CACGAACTAGCTAAGCTTGGC 59.339 52.381 25.81 25.81 40.44 4.52
221 222 2.758979 ACGAACTAGCTAAGCTTGGCTA 59.241 45.455 33.91 33.91 43.57 3.93
222 223 3.385111 ACGAACTAGCTAAGCTTGGCTAT 59.615 43.478 35.56 25.77 44.55 2.97
223 224 3.738282 CGAACTAGCTAAGCTTGGCTATG 59.262 47.826 35.56 29.72 44.55 2.23
224 225 4.499865 CGAACTAGCTAAGCTTGGCTATGA 60.500 45.833 35.56 21.58 44.55 2.15
225 226 5.546526 GAACTAGCTAAGCTTGGCTATGAT 58.453 41.667 35.56 26.10 44.55 2.45
226 227 5.559148 ACTAGCTAAGCTTGGCTATGATT 57.441 39.130 35.56 21.35 44.55 2.57
227 228 5.303971 ACTAGCTAAGCTTGGCTATGATTG 58.696 41.667 35.56 27.13 44.55 2.67
228 229 4.162040 AGCTAAGCTTGGCTATGATTGT 57.838 40.909 33.07 9.25 43.57 2.71
229 230 5.296151 AGCTAAGCTTGGCTATGATTGTA 57.704 39.130 33.07 0.00 43.57 2.41
230 231 5.684704 AGCTAAGCTTGGCTATGATTGTAA 58.315 37.500 33.07 0.00 43.57 2.41
231 232 6.302269 AGCTAAGCTTGGCTATGATTGTAAT 58.698 36.000 33.07 7.22 43.57 1.89
232 233 6.206243 AGCTAAGCTTGGCTATGATTGTAATG 59.794 38.462 33.07 0.00 43.57 1.90
233 234 6.016777 GCTAAGCTTGGCTATGATTGTAATGT 60.017 38.462 25.85 0.00 38.25 2.71
234 235 6.780457 AAGCTTGGCTATGATTGTAATGTT 57.220 33.333 0.00 0.00 38.25 2.71
235 236 7.880160 AAGCTTGGCTATGATTGTAATGTTA 57.120 32.000 0.00 0.00 38.25 2.41
236 237 7.880160 AGCTTGGCTATGATTGTAATGTTAA 57.120 32.000 0.00 0.00 36.99 2.01
237 238 8.469309 AGCTTGGCTATGATTGTAATGTTAAT 57.531 30.769 0.00 0.00 36.99 1.40
238 239 8.355169 AGCTTGGCTATGATTGTAATGTTAATG 58.645 33.333 0.00 0.00 36.99 1.90
239 240 8.352201 GCTTGGCTATGATTGTAATGTTAATGA 58.648 33.333 0.00 0.00 0.00 2.57
242 243 8.629158 TGGCTATGATTGTAATGTTAATGAACC 58.371 33.333 0.00 0.00 34.38 3.62
243 244 8.082242 GGCTATGATTGTAATGTTAATGAACCC 58.918 37.037 0.00 0.00 34.38 4.11
244 245 8.629158 GCTATGATTGTAATGTTAATGAACCCA 58.371 33.333 0.00 0.00 34.38 4.51
247 248 9.820725 ATGATTGTAATGTTAATGAACCCATTG 57.179 29.630 0.00 0.00 42.55 2.82
248 249 8.811017 TGATTGTAATGTTAATGAACCCATTGT 58.189 29.630 0.00 0.00 42.55 2.71
249 250 9.086336 GATTGTAATGTTAATGAACCCATTGTG 57.914 33.333 0.00 0.00 42.55 3.33
250 251 7.531857 TGTAATGTTAATGAACCCATTGTGT 57.468 32.000 0.00 0.00 42.55 3.72
251 252 7.374272 TGTAATGTTAATGAACCCATTGTGTG 58.626 34.615 0.00 0.00 42.55 3.82
260 261 3.743714 CCATTGTGTGGGAGGTTGA 57.256 52.632 0.00 0.00 44.79 3.18
261 262 2.220653 CCATTGTGTGGGAGGTTGAT 57.779 50.000 0.00 0.00 44.79 2.57
262 263 3.364460 CCATTGTGTGGGAGGTTGATA 57.636 47.619 0.00 0.00 44.79 2.15
263 264 3.902218 CCATTGTGTGGGAGGTTGATAT 58.098 45.455 0.00 0.00 44.79 1.63
264 265 3.885297 CCATTGTGTGGGAGGTTGATATC 59.115 47.826 0.00 0.00 44.79 1.63
265 266 3.644966 TTGTGTGGGAGGTTGATATCC 57.355 47.619 0.00 0.00 34.64 2.59
269 270 1.375326 GGGAGGTTGATATCCCGGC 59.625 63.158 0.00 0.00 45.63 6.13
270 271 1.415672 GGGAGGTTGATATCCCGGCA 61.416 60.000 0.00 0.00 45.63 5.69
271 272 0.693049 GGAGGTTGATATCCCGGCAT 59.307 55.000 0.00 0.00 0.00 4.40
272 273 1.339151 GGAGGTTGATATCCCGGCATC 60.339 57.143 0.00 0.00 0.00 3.91
273 274 1.625818 GAGGTTGATATCCCGGCATCT 59.374 52.381 0.00 0.00 0.00 2.90
274 275 1.349026 AGGTTGATATCCCGGCATCTG 59.651 52.381 0.00 0.00 0.00 2.90
275 276 1.072331 GGTTGATATCCCGGCATCTGT 59.928 52.381 0.00 0.00 0.00 3.41
276 277 2.146342 GTTGATATCCCGGCATCTGTG 58.854 52.381 0.00 0.00 0.00 3.66
277 278 0.686789 TGATATCCCGGCATCTGTGG 59.313 55.000 0.00 0.00 0.00 4.17
278 279 0.674895 GATATCCCGGCATCTGTGGC 60.675 60.000 0.00 0.00 46.68 5.01
306 307 6.619801 CCTGTTTTAGGTGATATGCCTAAC 57.380 41.667 12.50 7.72 45.23 2.34
307 308 6.119536 CCTGTTTTAGGTGATATGCCTAACA 58.880 40.000 12.50 10.75 45.23 2.41
308 309 6.772716 CCTGTTTTAGGTGATATGCCTAACAT 59.227 38.462 12.50 0.00 45.23 2.71
309 310 7.255242 CCTGTTTTAGGTGATATGCCTAACATG 60.255 40.741 12.50 0.00 45.23 3.21
310 311 6.545666 TGTTTTAGGTGATATGCCTAACATGG 59.454 38.462 12.50 0.00 45.23 3.66
311 312 5.904984 TTAGGTGATATGCCTAACATGGT 57.095 39.130 9.98 0.00 41.96 3.55
312 313 4.796110 AGGTGATATGCCTAACATGGTT 57.204 40.909 0.00 0.00 40.06 3.67
313 314 4.718961 AGGTGATATGCCTAACATGGTTC 58.281 43.478 0.00 0.00 40.06 3.62
314 315 4.165950 AGGTGATATGCCTAACATGGTTCA 59.834 41.667 0.00 0.00 40.06 3.18
315 316 4.516698 GGTGATATGCCTAACATGGTTCAG 59.483 45.833 0.00 0.00 40.06 3.02
316 317 5.126067 GTGATATGCCTAACATGGTTCAGT 58.874 41.667 0.00 0.00 40.06 3.41
317 318 6.288294 GTGATATGCCTAACATGGTTCAGTA 58.712 40.000 0.00 0.00 40.06 2.74
318 319 6.765989 GTGATATGCCTAACATGGTTCAGTAA 59.234 38.462 0.00 0.00 40.06 2.24
319 320 7.445402 GTGATATGCCTAACATGGTTCAGTAAT 59.555 37.037 0.00 0.00 40.06 1.89
320 321 8.655901 TGATATGCCTAACATGGTTCAGTAATA 58.344 33.333 0.00 0.00 40.06 0.98
321 322 9.502091 GATATGCCTAACATGGTTCAGTAATAA 57.498 33.333 0.00 0.00 40.06 1.40
322 323 9.860650 ATATGCCTAACATGGTTCAGTAATAAA 57.139 29.630 0.00 0.00 40.06 1.40
323 324 8.588290 ATGCCTAACATGGTTCAGTAATAAAA 57.412 30.769 0.00 0.00 37.70 1.52
324 325 7.822658 TGCCTAACATGGTTCAGTAATAAAAC 58.177 34.615 0.00 0.00 0.00 2.43
325 326 7.448777 TGCCTAACATGGTTCAGTAATAAAACA 59.551 33.333 0.00 0.00 0.00 2.83
326 327 8.301002 GCCTAACATGGTTCAGTAATAAAACAA 58.699 33.333 0.00 0.00 0.00 2.83
330 331 8.532977 ACATGGTTCAGTAATAAAACAATTGC 57.467 30.769 5.05 0.00 0.00 3.56
331 332 8.367156 ACATGGTTCAGTAATAAAACAATTGCT 58.633 29.630 5.05 0.00 32.76 3.91
332 333 9.206870 CATGGTTCAGTAATAAAACAATTGCTT 57.793 29.630 5.05 0.00 30.48 3.91
333 334 9.777297 ATGGTTCAGTAATAAAACAATTGCTTT 57.223 25.926 11.32 11.32 30.48 3.51
334 335 9.039870 TGGTTCAGTAATAAAACAATTGCTTTG 57.960 29.630 15.44 0.65 41.36 2.77
335 336 9.255304 GGTTCAGTAATAAAACAATTGCTTTGA 57.745 29.630 15.44 5.35 38.76 2.69
337 338 8.810652 TCAGTAATAAAACAATTGCTTTGACC 57.189 30.769 15.44 3.11 38.76 4.02
338 339 7.870445 TCAGTAATAAAACAATTGCTTTGACCC 59.130 33.333 15.44 3.40 38.76 4.46
339 340 7.872483 CAGTAATAAAACAATTGCTTTGACCCT 59.128 33.333 15.44 5.26 38.76 4.34
340 341 8.088365 AGTAATAAAACAATTGCTTTGACCCTC 58.912 33.333 15.44 3.62 38.76 4.30
341 342 4.751767 AAAACAATTGCTTTGACCCTCA 57.248 36.364 5.05 0.00 38.76 3.86
342 343 4.751767 AAACAATTGCTTTGACCCTCAA 57.248 36.364 5.05 0.00 38.76 3.02
343 344 4.751767 AACAATTGCTTTGACCCTCAAA 57.248 36.364 5.05 0.00 43.37 2.69
344 345 4.751767 ACAATTGCTTTGACCCTCAAAA 57.248 36.364 5.05 0.00 44.69 2.44
345 346 5.096443 ACAATTGCTTTGACCCTCAAAAA 57.904 34.783 5.05 0.00 44.69 1.94
377 378 5.636121 TGTACTTGTCTTTGCTATGGTTACG 59.364 40.000 0.00 0.00 0.00 3.18
378 379 3.435671 ACTTGTCTTTGCTATGGTTACGC 59.564 43.478 0.00 0.00 0.00 4.42
381 382 3.007635 GTCTTTGCTATGGTTACGCCTT 58.992 45.455 0.00 0.00 38.35 4.35
386 387 1.578583 CTATGGTTACGCCTTTCGGG 58.421 55.000 0.00 0.00 43.86 5.14
423 424 3.598273 AGTGGATCGAGTAGCCAGT 57.402 52.632 0.00 0.00 46.65 4.00
429 430 3.759086 TGGATCGAGTAGCCAGTGATATC 59.241 47.826 0.00 0.00 39.26 1.63
432 433 1.726251 CGAGTAGCCAGTGATATCGCG 60.726 57.143 10.53 0.00 0.00 5.87
434 435 1.009389 GTAGCCAGTGATATCGCGGC 61.009 60.000 29.04 29.04 42.21 6.53
464 465 4.739195 TGTTTCACGGAAGGTTTTTCAAG 58.261 39.130 0.00 0.00 0.00 3.02
468 469 4.266714 TCACGGAAGGTTTTTCAAGTTCT 58.733 39.130 0.00 0.00 0.00 3.01
471 472 5.969435 CACGGAAGGTTTTTCAAGTTCTTAC 59.031 40.000 0.00 0.00 0.00 2.34
478 479 9.772973 AAGGTTTTTCAAGTTCTTACAAAAAGT 57.227 25.926 11.34 0.00 29.02 2.66
520 523 1.890876 TAGCAATTCAAGGTGCGTGT 58.109 45.000 0.00 0.00 45.62 4.49
635 639 9.354673 AGGAATTGTTCTAAGATCTGTGAAAAA 57.645 29.630 12.93 12.93 0.00 1.94
643 647 5.757850 AAGATCTGTGAAAAATATCCCGC 57.242 39.130 0.00 0.00 0.00 6.13
707 713 3.245586 TGTGCCTTGGAGGGTGATATTTT 60.246 43.478 0.00 0.00 35.37 1.82
716 722 8.909423 TTGGAGGGTGATATTTTAAATCCTTT 57.091 30.769 0.00 0.00 0.00 3.11
778 784 7.387397 ACATGTTGTGGCAAATTATAAAAGTGG 59.613 33.333 0.00 0.00 0.00 4.00
835 841 3.561213 CAGCCACTCATGCGAGCG 61.561 66.667 0.00 0.00 43.66 5.03
1037 1044 2.094286 CACAACCAGGACAAGCAAACAA 60.094 45.455 0.00 0.00 0.00 2.83
1060 1067 2.982488 AGAACCAGTGTCAGATTTCCCT 59.018 45.455 0.00 0.00 0.00 4.20
1075 1082 1.952621 TCCCTAGGGACAAGTTGAGG 58.047 55.000 27.73 5.21 39.76 3.86
1123 1130 2.261671 GCGAGAAGAAGGGCGTCA 59.738 61.111 0.00 0.00 0.00 4.35
1128 1135 0.984230 AGAAGAAGGGCGTCATGGAA 59.016 50.000 0.00 0.00 0.00 3.53
1207 1217 2.512355 TACGGGCAGCAAGGACACA 61.512 57.895 0.00 0.00 0.00 3.72
1255 1265 2.881352 GCGAGAAGAAGGGCGTCG 60.881 66.667 0.00 0.00 0.00 5.12
1278 1288 3.259374 TCGAGAACATCAAGGAGAAGCTT 59.741 43.478 0.00 0.00 0.00 3.74
1287 1297 2.269241 GAGAAGCTTCCCGGTGGG 59.731 66.667 22.81 0.00 46.11 4.61
1319 1329 1.162698 CAGCACACCACTGGAATGAG 58.837 55.000 0.71 0.00 0.00 2.90
1327 1337 2.351244 ACTGGAATGAGCGGCTCGA 61.351 57.895 23.72 13.89 32.35 4.04
1344 1354 1.965930 GAAGACGCATGCCACCACA 60.966 57.895 13.15 0.00 0.00 4.17
1393 1403 2.108157 GACACACCGGCACTGACA 59.892 61.111 0.00 0.00 0.00 3.58
1416 1426 1.081892 CCGGTGAGAACAAGAGCATG 58.918 55.000 0.00 0.00 0.00 4.06
1545 1556 5.741011 ACTTCCACCGTGTATACATGAATT 58.259 37.500 23.87 7.21 34.90 2.17
1546 1557 6.177610 ACTTCCACCGTGTATACATGAATTT 58.822 36.000 23.87 4.97 34.90 1.82
1548 1559 7.825270 ACTTCCACCGTGTATACATGAATTTAA 59.175 33.333 23.87 11.38 34.90 1.52
1549 1560 7.780008 TCCACCGTGTATACATGAATTTAAG 57.220 36.000 23.87 9.54 34.90 1.85
1552 1563 7.201696 CCACCGTGTATACATGAATTTAAGCTT 60.202 37.037 23.87 3.48 34.90 3.74
1553 1564 8.181573 CACCGTGTATACATGAATTTAAGCTTT 58.818 33.333 23.87 0.00 34.90 3.51
1554 1565 8.395633 ACCGTGTATACATGAATTTAAGCTTTC 58.604 33.333 23.87 0.00 34.90 2.62
1555 1566 8.394877 CCGTGTATACATGAATTTAAGCTTTCA 58.605 33.333 23.87 2.00 36.38 2.69
1556 1567 9.935682 CGTGTATACATGAATTTAAGCTTTCAT 57.064 29.630 18.59 4.75 41.93 2.57
1563 1574 6.764308 TGAATTTAAGCTTTCATGGAGGAG 57.236 37.500 3.20 0.00 0.00 3.69
1564 1575 5.126061 TGAATTTAAGCTTTCATGGAGGAGC 59.874 40.000 3.20 0.00 35.42 4.70
1565 1576 2.315925 TAAGCTTTCATGGAGGAGCG 57.684 50.000 3.20 0.00 39.99 5.03
1566 1577 1.028868 AAGCTTTCATGGAGGAGCGC 61.029 55.000 0.00 0.00 39.99 5.92
1568 1579 1.821332 CTTTCATGGAGGAGCGCCC 60.821 63.158 2.29 5.07 33.31 6.13
1569 1580 3.344137 TTTCATGGAGGAGCGCCCC 62.344 63.158 2.29 0.00 34.66 5.80
1571 1582 4.113815 CATGGAGGAGCGCCCCAA 62.114 66.667 11.77 0.00 37.82 4.12
1573 1584 2.693871 ATGGAGGAGCGCCCCAATT 61.694 57.895 11.77 3.22 37.82 2.32
1619 1633 1.949465 ACAGTGTGTCGAGGGTTTTC 58.051 50.000 0.00 0.00 0.00 2.29
1646 1660 9.631639 GTTTGTTTACAATTTGCATACTTTGAC 57.368 29.630 0.00 0.00 35.55 3.18
1647 1661 8.932945 TTGTTTACAATTTGCATACTTTGACA 57.067 26.923 0.00 0.00 0.00 3.58
1829 1937 4.150980 CACAAACTAATTACTTCCACGCGA 59.849 41.667 15.93 0.00 0.00 5.87
1864 1974 3.465742 AGGATGATCAACGACTGATGG 57.534 47.619 0.00 0.00 45.23 3.51
1877 1987 4.040095 ACGACTGATGGTGATGATGATGAT 59.960 41.667 0.00 0.00 0.00 2.45
1878 1988 4.389077 CGACTGATGGTGATGATGATGATG 59.611 45.833 0.00 0.00 0.00 3.07
1879 1989 5.548406 GACTGATGGTGATGATGATGATGA 58.452 41.667 0.00 0.00 0.00 2.92
1880 1990 6.128138 ACTGATGGTGATGATGATGATGAT 57.872 37.500 0.00 0.00 0.00 2.45
1881 1991 5.940470 ACTGATGGTGATGATGATGATGATG 59.060 40.000 0.00 0.00 0.00 3.07
1882 1992 6.121776 TGATGGTGATGATGATGATGATGA 57.878 37.500 0.00 0.00 0.00 2.92
1883 1993 6.721318 TGATGGTGATGATGATGATGATGAT 58.279 36.000 0.00 0.00 0.00 2.45
1884 1994 6.599244 TGATGGTGATGATGATGATGATGATG 59.401 38.462 0.00 0.00 0.00 3.07
1885 1995 6.121776 TGGTGATGATGATGATGATGATGA 57.878 37.500 0.00 0.00 0.00 2.92
1886 1996 6.721318 TGGTGATGATGATGATGATGATGAT 58.279 36.000 0.00 0.00 0.00 2.45
1887 1997 6.599244 TGGTGATGATGATGATGATGATGATG 59.401 38.462 0.00 0.00 0.00 3.07
1888 1998 6.823689 GGTGATGATGATGATGATGATGATGA 59.176 38.462 0.00 0.00 0.00 2.92
1889 1999 7.500559 GGTGATGATGATGATGATGATGATGAT 59.499 37.037 0.00 0.00 0.00 2.45
1890 2000 8.341173 GTGATGATGATGATGATGATGATGATG 58.659 37.037 0.00 0.00 0.00 3.07
1891 2001 8.267183 TGATGATGATGATGATGATGATGATGA 58.733 33.333 0.00 0.00 0.00 2.92
1892 2002 9.282569 GATGATGATGATGATGATGATGATGAT 57.717 33.333 0.00 0.00 0.00 2.45
1945 2055 1.600916 GGTGAACAGTGGTGGAGGC 60.601 63.158 0.00 0.00 0.00 4.70
1946 2056 1.148273 GTGAACAGTGGTGGAGGCA 59.852 57.895 0.00 0.00 0.00 4.75
1951 2061 1.529010 CAGTGGTGGAGGCAAGCAA 60.529 57.895 0.00 0.00 0.00 3.91
2065 2175 1.407437 GGATGCAGTCCGGAATGTCTT 60.407 52.381 30.52 20.33 37.23 3.01
2153 2263 4.193826 ACTCGTGATGCACTAAACAGAT 57.806 40.909 0.00 0.00 31.34 2.90
2277 2387 9.450807 AGAAACTTTCACATAAAAATGAGTTCG 57.549 29.630 4.34 0.00 0.00 3.95
2403 2513 2.486472 CACAAGAAGTGGATGGAGCT 57.514 50.000 0.00 0.00 44.69 4.09
2415 2525 3.231736 GGAGCTCCCCGCCGATAA 61.232 66.667 23.19 0.00 40.39 1.75
2427 2537 1.605712 CGCCGATAAGAAGGTGGATCC 60.606 57.143 4.20 4.20 34.57 3.36
2431 2541 2.760374 GATAAGAAGGTGGATCCTGCG 58.240 52.381 14.23 0.00 46.52 5.18
2432 2542 1.568504 TAAGAAGGTGGATCCTGCGT 58.431 50.000 14.23 4.84 46.52 5.24
2433 2543 0.693049 AAGAAGGTGGATCCTGCGTT 59.307 50.000 14.23 13.08 46.52 4.84
2434 2544 0.250513 AGAAGGTGGATCCTGCGTTC 59.749 55.000 22.82 22.82 46.52 3.95
2435 2545 2.447556 AGAAGGTGGATCCTGCGTTCA 61.448 52.381 27.49 3.96 46.52 3.18
2436 2546 1.599047 AGGTGGATCCTGCGTTCAG 59.401 57.895 14.23 0.00 46.19 3.02
2437 2547 2.527951 AGGTGGATCCTGCGTTCAGC 62.528 60.000 14.23 0.00 46.19 4.26
2446 2556 2.465920 GCGTTCAGCGTCGACAAG 59.534 61.111 17.16 4.42 43.66 3.16
2447 2557 2.465920 CGTTCAGCGTCGACAAGC 59.534 61.111 17.16 11.87 35.54 4.01
2448 2558 2.853914 GTTCAGCGTCGACAAGCC 59.146 61.111 17.16 0.30 0.00 4.35
2449 2559 2.733218 TTCAGCGTCGACAAGCCG 60.733 61.111 17.16 4.32 0.00 5.52
2450 2560 4.717629 TCAGCGTCGACAAGCCGG 62.718 66.667 17.16 0.00 0.00 6.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.410850 ATGTGTGGATAGCTCCCCCG 61.411 60.000 0.00 0.00 41.29 5.73
1 2 0.398318 GATGTGTGGATAGCTCCCCC 59.602 60.000 0.00 0.00 41.29 5.40
2 3 1.428869 AGATGTGTGGATAGCTCCCC 58.571 55.000 0.00 0.00 41.29 4.81
3 4 2.564947 CCTAGATGTGTGGATAGCTCCC 59.435 54.545 0.00 0.00 41.29 4.30
4 5 3.501349 TCCTAGATGTGTGGATAGCTCC 58.499 50.000 0.00 0.00 42.45 4.70
5 6 3.056891 GCTCCTAGATGTGTGGATAGCTC 60.057 52.174 0.00 0.00 0.00 4.09
6 7 2.896685 GCTCCTAGATGTGTGGATAGCT 59.103 50.000 0.00 0.00 0.00 3.32
7 8 2.352225 CGCTCCTAGATGTGTGGATAGC 60.352 54.545 0.00 0.00 0.00 2.97
8 9 3.149981 TCGCTCCTAGATGTGTGGATAG 58.850 50.000 0.00 0.00 0.00 2.08
9 10 3.223674 TCGCTCCTAGATGTGTGGATA 57.776 47.619 0.00 0.00 0.00 2.59
10 11 2.073252 TCGCTCCTAGATGTGTGGAT 57.927 50.000 0.00 0.00 0.00 3.41
11 12 1.957177 GATCGCTCCTAGATGTGTGGA 59.043 52.381 0.00 0.00 0.00 4.02
12 13 1.683385 TGATCGCTCCTAGATGTGTGG 59.317 52.381 0.00 0.00 0.00 4.17
13 14 2.288091 CCTGATCGCTCCTAGATGTGTG 60.288 54.545 0.00 0.00 0.00 3.82
14 15 1.959985 CCTGATCGCTCCTAGATGTGT 59.040 52.381 0.00 0.00 0.00 3.72
15 16 2.234143 TCCTGATCGCTCCTAGATGTG 58.766 52.381 0.00 0.00 0.00 3.21
16 17 2.666272 TCCTGATCGCTCCTAGATGT 57.334 50.000 0.00 0.00 0.00 3.06
17 18 4.499526 GCATATCCTGATCGCTCCTAGATG 60.500 50.000 0.00 0.00 0.00 2.90
18 19 3.636300 GCATATCCTGATCGCTCCTAGAT 59.364 47.826 0.00 0.00 0.00 1.98
19 20 3.020274 GCATATCCTGATCGCTCCTAGA 58.980 50.000 0.00 0.00 0.00 2.43
20 21 2.757314 TGCATATCCTGATCGCTCCTAG 59.243 50.000 0.00 0.00 0.00 3.02
21 22 2.807676 TGCATATCCTGATCGCTCCTA 58.192 47.619 0.00 0.00 0.00 2.94
22 23 1.637338 TGCATATCCTGATCGCTCCT 58.363 50.000 0.00 0.00 0.00 3.69
23 24 2.687700 ATGCATATCCTGATCGCTCC 57.312 50.000 0.00 0.00 0.00 4.70
24 25 4.645762 TCTATGCATATCCTGATCGCTC 57.354 45.455 6.92 0.00 0.00 5.03
25 26 5.174395 GTTTCTATGCATATCCTGATCGCT 58.826 41.667 6.92 0.00 0.00 4.93
26 27 4.032217 CGTTTCTATGCATATCCTGATCGC 59.968 45.833 6.92 0.00 0.00 4.58
27 28 4.564372 CCGTTTCTATGCATATCCTGATCG 59.436 45.833 6.92 8.72 0.00 3.69
28 29 5.578727 GTCCGTTTCTATGCATATCCTGATC 59.421 44.000 6.92 0.00 0.00 2.92
29 30 5.247110 AGTCCGTTTCTATGCATATCCTGAT 59.753 40.000 6.92 0.00 0.00 2.90
30 31 4.588951 AGTCCGTTTCTATGCATATCCTGA 59.411 41.667 6.92 0.00 0.00 3.86
31 32 4.887748 AGTCCGTTTCTATGCATATCCTG 58.112 43.478 6.92 0.00 0.00 3.86
32 33 4.588951 TGAGTCCGTTTCTATGCATATCCT 59.411 41.667 6.92 0.00 0.00 3.24
33 34 4.686554 GTGAGTCCGTTTCTATGCATATCC 59.313 45.833 6.92 0.00 0.00 2.59
34 35 5.289595 TGTGAGTCCGTTTCTATGCATATC 58.710 41.667 6.92 0.00 0.00 1.63
35 36 5.163405 ACTGTGAGTCCGTTTCTATGCATAT 60.163 40.000 6.92 0.00 0.00 1.78
36 37 4.159693 ACTGTGAGTCCGTTTCTATGCATA 59.840 41.667 6.20 6.20 0.00 3.14
37 38 3.055819 ACTGTGAGTCCGTTTCTATGCAT 60.056 43.478 3.79 3.79 0.00 3.96
38 39 2.299013 ACTGTGAGTCCGTTTCTATGCA 59.701 45.455 0.00 0.00 0.00 3.96
39 40 2.960819 ACTGTGAGTCCGTTTCTATGC 58.039 47.619 0.00 0.00 0.00 3.14
40 41 3.123621 GCAACTGTGAGTCCGTTTCTATG 59.876 47.826 0.00 0.00 0.00 2.23
41 42 3.006967 AGCAACTGTGAGTCCGTTTCTAT 59.993 43.478 0.00 0.00 0.00 1.98
42 43 2.364324 AGCAACTGTGAGTCCGTTTCTA 59.636 45.455 0.00 0.00 0.00 2.10
43 44 1.139058 AGCAACTGTGAGTCCGTTTCT 59.861 47.619 0.00 0.00 0.00 2.52
44 45 1.261619 CAGCAACTGTGAGTCCGTTTC 59.738 52.381 0.00 0.00 0.00 2.78
45 46 1.299541 CAGCAACTGTGAGTCCGTTT 58.700 50.000 0.00 0.00 0.00 3.60
46 47 1.160329 GCAGCAACTGTGAGTCCGTT 61.160 55.000 0.00 0.00 33.43 4.44
47 48 1.595382 GCAGCAACTGTGAGTCCGT 60.595 57.895 0.00 0.00 33.43 4.69
48 49 1.563435 CTGCAGCAACTGTGAGTCCG 61.563 60.000 0.00 0.00 33.43 4.79
49 50 1.233285 CCTGCAGCAACTGTGAGTCC 61.233 60.000 8.66 0.00 33.43 3.85
50 51 0.533755 ACCTGCAGCAACTGTGAGTC 60.534 55.000 8.66 0.00 33.43 3.36
51 52 0.107017 AACCTGCAGCAACTGTGAGT 60.107 50.000 8.66 0.00 33.43 3.41
52 53 0.590195 GAACCTGCAGCAACTGTGAG 59.410 55.000 8.66 0.00 33.43 3.51
53 54 0.107263 TGAACCTGCAGCAACTGTGA 60.107 50.000 8.66 0.00 33.43 3.58
54 55 0.029834 GTGAACCTGCAGCAACTGTG 59.970 55.000 8.66 0.00 33.43 3.66
55 56 0.107017 AGTGAACCTGCAGCAACTGT 60.107 50.000 8.66 0.00 33.43 3.55
56 57 0.590195 GAGTGAACCTGCAGCAACTG 59.410 55.000 8.66 0.00 34.12 3.16
57 58 0.882042 CGAGTGAACCTGCAGCAACT 60.882 55.000 8.66 8.32 0.00 3.16
58 59 1.160329 ACGAGTGAACCTGCAGCAAC 61.160 55.000 8.66 3.20 0.00 4.17
59 60 1.146041 ACGAGTGAACCTGCAGCAA 59.854 52.632 8.66 0.00 0.00 3.91
60 61 1.595109 CACGAGTGAACCTGCAGCA 60.595 57.895 8.66 0.00 0.00 4.41
61 62 2.959357 GCACGAGTGAACCTGCAGC 61.959 63.158 8.66 0.00 0.00 5.25
62 63 1.595109 TGCACGAGTGAACCTGCAG 60.595 57.895 6.78 6.78 34.73 4.41
63 64 1.595109 CTGCACGAGTGAACCTGCA 60.595 57.895 7.50 0.00 37.30 4.41
64 65 0.880278 TTCTGCACGAGTGAACCTGC 60.880 55.000 7.50 0.00 0.00 4.85
65 66 1.143305 CTTCTGCACGAGTGAACCTG 58.857 55.000 7.50 0.00 0.00 4.00
66 67 0.034059 CCTTCTGCACGAGTGAACCT 59.966 55.000 7.50 0.00 0.00 3.50
67 68 0.033504 TCCTTCTGCACGAGTGAACC 59.966 55.000 7.50 0.00 0.00 3.62
68 69 1.423395 CTCCTTCTGCACGAGTGAAC 58.577 55.000 7.50 0.00 0.00 3.18
69 70 0.319900 GCTCCTTCTGCACGAGTGAA 60.320 55.000 7.50 0.00 0.00 3.18
70 71 1.290324 GCTCCTTCTGCACGAGTGA 59.710 57.895 7.50 0.00 0.00 3.41
71 72 1.739562 GGCTCCTTCTGCACGAGTG 60.740 63.158 0.00 0.00 0.00 3.51
72 73 1.758440 TTGGCTCCTTCTGCACGAGT 61.758 55.000 0.00 0.00 0.00 4.18
73 74 1.004560 TTGGCTCCTTCTGCACGAG 60.005 57.895 0.00 0.00 0.00 4.18
74 75 1.004560 CTTGGCTCCTTCTGCACGA 60.005 57.895 0.00 0.00 0.00 4.35
75 76 2.684843 GCTTGGCTCCTTCTGCACG 61.685 63.158 0.00 0.00 0.00 5.34
76 77 0.892814 AAGCTTGGCTCCTTCTGCAC 60.893 55.000 0.00 0.00 38.25 4.57
77 78 0.607489 GAAGCTTGGCTCCTTCTGCA 60.607 55.000 2.10 0.00 38.25 4.41
78 79 0.607489 TGAAGCTTGGCTCCTTCTGC 60.607 55.000 2.10 0.00 38.25 4.26
79 80 1.163554 GTGAAGCTTGGCTCCTTCTG 58.836 55.000 2.10 0.00 38.25 3.02
80 81 0.321122 CGTGAAGCTTGGCTCCTTCT 60.321 55.000 2.10 0.00 38.25 2.85
81 82 1.301677 CCGTGAAGCTTGGCTCCTTC 61.302 60.000 2.10 5.73 38.25 3.46
82 83 1.302832 CCGTGAAGCTTGGCTCCTT 60.303 57.895 2.10 0.00 38.25 3.36
83 84 2.348998 CCGTGAAGCTTGGCTCCT 59.651 61.111 2.10 0.00 38.25 3.69
84 85 3.435186 GCCGTGAAGCTTGGCTCC 61.435 66.667 16.91 0.00 45.40 4.70
85 86 3.793144 CGCCGTGAAGCTTGGCTC 61.793 66.667 20.47 0.64 46.67 4.70
86 87 2.521958 ATACGCCGTGAAGCTTGGCT 62.522 55.000 20.47 11.98 46.67 4.75
87 88 2.106683 ATACGCCGTGAAGCTTGGC 61.107 57.895 14.75 14.75 45.39 4.52
88 89 1.715585 CATACGCCGTGAAGCTTGG 59.284 57.895 2.10 0.00 0.00 3.61
89 90 1.060937 GCATACGCCGTGAAGCTTG 59.939 57.895 2.10 0.00 0.00 4.01
90 91 0.744414 ATGCATACGCCGTGAAGCTT 60.744 50.000 0.00 0.00 37.32 3.74
91 92 1.153369 ATGCATACGCCGTGAAGCT 60.153 52.632 0.00 0.00 37.32 3.74
92 93 1.276844 GATGCATACGCCGTGAAGC 59.723 57.895 0.00 1.31 37.32 3.86
93 94 0.869880 TCGATGCATACGCCGTGAAG 60.870 55.000 0.00 0.00 37.32 3.02
94 95 0.249280 ATCGATGCATACGCCGTGAA 60.249 50.000 0.00 0.00 37.32 3.18
95 96 0.663269 GATCGATGCATACGCCGTGA 60.663 55.000 0.54 0.00 37.32 4.35
96 97 1.617755 GGATCGATGCATACGCCGTG 61.618 60.000 12.54 0.00 37.32 4.94
97 98 1.372997 GGATCGATGCATACGCCGT 60.373 57.895 12.54 0.00 37.32 5.68
98 99 1.080501 AGGATCGATGCATACGCCG 60.081 57.895 19.67 0.00 37.32 6.46
99 100 1.016130 CCAGGATCGATGCATACGCC 61.016 60.000 19.67 4.29 37.32 5.68
100 101 0.038251 TCCAGGATCGATGCATACGC 60.038 55.000 19.67 0.00 39.24 4.42
101 102 2.029918 TCTTCCAGGATCGATGCATACG 60.030 50.000 19.67 5.66 0.00 3.06
102 103 3.667497 TCTTCCAGGATCGATGCATAC 57.333 47.619 19.67 0.00 0.00 2.39
103 104 4.081807 CAGATCTTCCAGGATCGATGCATA 60.082 45.833 19.67 0.69 44.71 3.14
104 105 2.905085 AGATCTTCCAGGATCGATGCAT 59.095 45.455 19.67 0.00 44.71 3.96
105 106 2.036862 CAGATCTTCCAGGATCGATGCA 59.963 50.000 19.67 0.00 44.71 3.96
106 107 2.298446 TCAGATCTTCCAGGATCGATGC 59.702 50.000 9.16 9.16 44.71 3.91
107 108 4.558178 CTTCAGATCTTCCAGGATCGATG 58.442 47.826 0.54 0.00 44.71 3.84
108 109 3.577848 CCTTCAGATCTTCCAGGATCGAT 59.422 47.826 0.00 0.00 44.71 3.59
109 110 2.961741 CCTTCAGATCTTCCAGGATCGA 59.038 50.000 5.89 0.00 44.71 3.59
110 111 2.697751 ACCTTCAGATCTTCCAGGATCG 59.302 50.000 15.68 0.00 44.71 3.69
111 112 3.070878 GGACCTTCAGATCTTCCAGGATC 59.929 52.174 15.68 10.21 41.55 3.36
112 113 3.044894 GGACCTTCAGATCTTCCAGGAT 58.955 50.000 15.68 3.60 0.00 3.24
113 114 2.225624 TGGACCTTCAGATCTTCCAGGA 60.226 50.000 15.68 0.00 32.45 3.86
114 115 2.191400 TGGACCTTCAGATCTTCCAGG 58.809 52.381 8.71 9.02 32.45 4.45
115 116 3.988976 TTGGACCTTCAGATCTTCCAG 57.011 47.619 11.89 0.39 37.64 3.86
116 117 4.289410 TCATTTGGACCTTCAGATCTTCCA 59.711 41.667 8.71 8.71 34.46 3.53
117 118 4.848357 TCATTTGGACCTTCAGATCTTCC 58.152 43.478 3.75 3.75 0.00 3.46
118 119 4.880696 CCTCATTTGGACCTTCAGATCTTC 59.119 45.833 0.00 0.00 0.00 2.87
119 120 4.853007 CCTCATTTGGACCTTCAGATCTT 58.147 43.478 0.00 0.00 0.00 2.40
120 121 3.371380 GCCTCATTTGGACCTTCAGATCT 60.371 47.826 0.00 0.00 0.00 2.75
121 122 2.948315 GCCTCATTTGGACCTTCAGATC 59.052 50.000 0.00 0.00 0.00 2.75
122 123 2.579860 AGCCTCATTTGGACCTTCAGAT 59.420 45.455 0.00 0.00 0.00 2.90
123 124 1.988107 AGCCTCATTTGGACCTTCAGA 59.012 47.619 0.00 0.00 0.00 3.27
124 125 2.503895 AGCCTCATTTGGACCTTCAG 57.496 50.000 0.00 0.00 0.00 3.02
125 126 3.371917 CCATAGCCTCATTTGGACCTTCA 60.372 47.826 0.00 0.00 0.00 3.02
126 127 3.217626 CCATAGCCTCATTTGGACCTTC 58.782 50.000 0.00 0.00 0.00 3.46
127 128 2.582636 ACCATAGCCTCATTTGGACCTT 59.417 45.455 0.00 0.00 33.36 3.50
128 129 2.208872 ACCATAGCCTCATTTGGACCT 58.791 47.619 0.00 0.00 33.36 3.85
129 130 2.736670 ACCATAGCCTCATTTGGACC 57.263 50.000 0.00 0.00 33.36 4.46
130 131 3.879892 GAGAACCATAGCCTCATTTGGAC 59.120 47.826 0.00 0.00 33.36 4.02
131 132 3.523157 TGAGAACCATAGCCTCATTTGGA 59.477 43.478 0.00 0.00 32.57 3.53
132 133 3.889815 TGAGAACCATAGCCTCATTTGG 58.110 45.455 0.00 0.00 32.57 3.28
133 134 5.902613 TTTGAGAACCATAGCCTCATTTG 57.097 39.130 0.00 0.00 36.88 2.32
134 135 6.438425 ACATTTTGAGAACCATAGCCTCATTT 59.562 34.615 0.00 0.00 36.88 2.32
135 136 5.954150 ACATTTTGAGAACCATAGCCTCATT 59.046 36.000 0.00 0.00 36.88 2.57
136 137 5.359009 CACATTTTGAGAACCATAGCCTCAT 59.641 40.000 0.00 0.00 36.88 2.90
137 138 4.701651 CACATTTTGAGAACCATAGCCTCA 59.298 41.667 0.00 0.00 35.38 3.86
138 139 4.943705 TCACATTTTGAGAACCATAGCCTC 59.056 41.667 0.00 0.00 0.00 4.70
139 140 4.922206 TCACATTTTGAGAACCATAGCCT 58.078 39.130 0.00 0.00 0.00 4.58
140 141 5.183904 ACTTCACATTTTGAGAACCATAGCC 59.816 40.000 0.00 0.00 34.94 3.93
141 142 6.259550 ACTTCACATTTTGAGAACCATAGC 57.740 37.500 0.00 0.00 34.94 2.97
142 143 8.103948 AGAACTTCACATTTTGAGAACCATAG 57.896 34.615 0.00 0.00 34.94 2.23
143 144 8.352201 CAAGAACTTCACATTTTGAGAACCATA 58.648 33.333 0.00 0.00 34.94 2.74
144 145 6.966534 AGAACTTCACATTTTGAGAACCAT 57.033 33.333 0.00 0.00 34.94 3.55
145 146 6.563422 CAAGAACTTCACATTTTGAGAACCA 58.437 36.000 0.00 0.00 34.94 3.67
146 147 5.460091 GCAAGAACTTCACATTTTGAGAACC 59.540 40.000 0.00 0.00 34.94 3.62
147 148 6.268566 AGCAAGAACTTCACATTTTGAGAAC 58.731 36.000 0.00 0.00 34.94 3.01
148 149 6.455360 AGCAAGAACTTCACATTTTGAGAA 57.545 33.333 0.00 0.00 34.94 2.87
149 150 6.127647 ACAAGCAAGAACTTCACATTTTGAGA 60.128 34.615 0.00 0.00 34.94 3.27
150 151 6.038356 ACAAGCAAGAACTTCACATTTTGAG 58.962 36.000 0.00 0.00 34.94 3.02
151 152 5.964758 ACAAGCAAGAACTTCACATTTTGA 58.035 33.333 0.00 0.00 0.00 2.69
152 153 7.195646 TCTACAAGCAAGAACTTCACATTTTG 58.804 34.615 0.00 0.00 0.00 2.44
153 154 7.333528 TCTACAAGCAAGAACTTCACATTTT 57.666 32.000 0.00 0.00 0.00 1.82
154 155 6.942532 TCTACAAGCAAGAACTTCACATTT 57.057 33.333 0.00 0.00 0.00 2.32
155 156 6.767902 TCTTCTACAAGCAAGAACTTCACATT 59.232 34.615 0.00 0.00 0.00 2.71
156 157 6.291377 TCTTCTACAAGCAAGAACTTCACAT 58.709 36.000 0.00 0.00 0.00 3.21
157 158 5.670485 TCTTCTACAAGCAAGAACTTCACA 58.330 37.500 0.00 0.00 0.00 3.58
158 159 5.986135 TCTCTTCTACAAGCAAGAACTTCAC 59.014 40.000 0.00 0.00 0.00 3.18
159 160 5.986135 GTCTCTTCTACAAGCAAGAACTTCA 59.014 40.000 0.00 0.00 0.00 3.02
160 161 5.117897 CGTCTCTTCTACAAGCAAGAACTTC 59.882 44.000 0.00 0.00 0.00 3.01
161 162 4.985409 CGTCTCTTCTACAAGCAAGAACTT 59.015 41.667 0.00 0.00 0.00 2.66
162 163 4.551388 CGTCTCTTCTACAAGCAAGAACT 58.449 43.478 0.00 0.00 0.00 3.01
163 164 3.122111 GCGTCTCTTCTACAAGCAAGAAC 59.878 47.826 0.00 0.00 0.00 3.01
164 165 3.318017 GCGTCTCTTCTACAAGCAAGAA 58.682 45.455 0.00 0.00 0.00 2.52
165 166 2.352814 GGCGTCTCTTCTACAAGCAAGA 60.353 50.000 0.00 0.00 0.00 3.02
166 167 1.996191 GGCGTCTCTTCTACAAGCAAG 59.004 52.381 0.00 0.00 0.00 4.01
167 168 1.343142 TGGCGTCTCTTCTACAAGCAA 59.657 47.619 0.00 0.00 0.00 3.91
168 169 0.966179 TGGCGTCTCTTCTACAAGCA 59.034 50.000 0.00 0.00 0.00 3.91
169 170 1.727335 GTTGGCGTCTCTTCTACAAGC 59.273 52.381 0.00 0.00 0.00 4.01
170 171 2.338500 GGTTGGCGTCTCTTCTACAAG 58.662 52.381 0.00 0.00 0.00 3.16
171 172 1.336517 CGGTTGGCGTCTCTTCTACAA 60.337 52.381 0.00 0.00 0.00 2.41
172 173 0.242825 CGGTTGGCGTCTCTTCTACA 59.757 55.000 0.00 0.00 0.00 2.74
173 174 0.243095 ACGGTTGGCGTCTCTTCTAC 59.757 55.000 0.00 0.00 0.00 2.59
174 175 0.242825 CACGGTTGGCGTCTCTTCTA 59.757 55.000 0.00 0.00 0.00 2.10
175 176 1.006102 CACGGTTGGCGTCTCTTCT 60.006 57.895 0.00 0.00 0.00 2.85
176 177 2.668280 GCACGGTTGGCGTCTCTTC 61.668 63.158 0.00 0.00 0.00 2.87
177 178 2.665185 GCACGGTTGGCGTCTCTT 60.665 61.111 0.00 0.00 0.00 2.85
178 179 3.616721 AGCACGGTTGGCGTCTCT 61.617 61.111 0.00 0.00 36.08 3.10
179 180 3.414700 CAGCACGGTTGGCGTCTC 61.415 66.667 0.00 0.00 36.08 3.36
194 195 0.917259 CTTAGCTAGTTCGTGCGCAG 59.083 55.000 12.22 5.26 0.00 5.18
195 196 1.076533 GCTTAGCTAGTTCGTGCGCA 61.077 55.000 5.66 5.66 0.00 6.09
196 197 0.802607 AGCTTAGCTAGTTCGTGCGC 60.803 55.000 4.30 0.00 36.99 6.09
197 198 1.321743 CAAGCTTAGCTAGTTCGTGCG 59.678 52.381 7.32 0.00 38.25 5.34
198 199 1.661112 CCAAGCTTAGCTAGTTCGTGC 59.339 52.381 7.32 0.00 38.25 5.34
199 200 1.661112 GCCAAGCTTAGCTAGTTCGTG 59.339 52.381 7.32 0.21 38.25 4.35
200 201 1.550976 AGCCAAGCTTAGCTAGTTCGT 59.449 47.619 18.20 0.00 38.25 3.85
201 202 2.301577 AGCCAAGCTTAGCTAGTTCG 57.698 50.000 18.20 0.00 38.25 3.95
202 203 4.950050 TCATAGCCAAGCTTAGCTAGTTC 58.050 43.478 26.67 0.00 44.36 3.01
203 204 5.559148 ATCATAGCCAAGCTTAGCTAGTT 57.441 39.130 26.67 12.33 44.36 2.24
204 205 5.163258 ACAATCATAGCCAAGCTTAGCTAGT 60.163 40.000 26.67 17.67 44.36 2.57
205 206 5.303971 ACAATCATAGCCAAGCTTAGCTAG 58.696 41.667 26.67 19.33 44.36 3.42
206 207 5.296151 ACAATCATAGCCAAGCTTAGCTA 57.704 39.130 25.45 25.45 45.17 3.32
207 208 4.162040 ACAATCATAGCCAAGCTTAGCT 57.838 40.909 22.82 22.82 42.56 3.32
208 209 6.016777 ACATTACAATCATAGCCAAGCTTAGC 60.017 38.462 9.00 9.00 40.44 3.09
209 210 7.502120 ACATTACAATCATAGCCAAGCTTAG 57.498 36.000 0.00 0.00 40.44 2.18
210 211 7.880160 AACATTACAATCATAGCCAAGCTTA 57.120 32.000 0.00 0.00 40.44 3.09
211 212 6.780457 AACATTACAATCATAGCCAAGCTT 57.220 33.333 0.00 0.00 40.44 3.74
212 213 7.880160 TTAACATTACAATCATAGCCAAGCT 57.120 32.000 0.00 0.00 43.41 3.74
213 214 8.352201 TCATTAACATTACAATCATAGCCAAGC 58.648 33.333 0.00 0.00 0.00 4.01
216 217 8.629158 GGTTCATTAACATTACAATCATAGCCA 58.371 33.333 0.00 0.00 37.34 4.75
217 218 8.082242 GGGTTCATTAACATTACAATCATAGCC 58.918 37.037 0.00 0.00 37.34 3.93
218 219 8.629158 TGGGTTCATTAACATTACAATCATAGC 58.371 33.333 0.00 0.00 37.34 2.97
221 222 9.820725 CAATGGGTTCATTAACATTACAATCAT 57.179 29.630 0.00 0.00 41.29 2.45
222 223 8.811017 ACAATGGGTTCATTAACATTACAATCA 58.189 29.630 0.00 0.00 41.29 2.57
223 224 9.086336 CACAATGGGTTCATTAACATTACAATC 57.914 33.333 0.00 0.00 41.29 2.67
224 225 8.592809 ACACAATGGGTTCATTAACATTACAAT 58.407 29.630 0.00 0.00 41.29 2.71
225 226 7.869937 CACACAATGGGTTCATTAACATTACAA 59.130 33.333 0.00 0.00 41.29 2.41
226 227 7.374272 CACACAATGGGTTCATTAACATTACA 58.626 34.615 0.00 0.00 41.29 2.41
227 228 6.811170 CCACACAATGGGTTCATTAACATTAC 59.189 38.462 0.00 0.00 45.95 1.89
228 229 6.929625 CCACACAATGGGTTCATTAACATTA 58.070 36.000 0.00 0.00 45.95 1.90
229 230 5.792741 CCACACAATGGGTTCATTAACATT 58.207 37.500 0.00 0.00 45.95 2.71
230 231 5.404466 CCACACAATGGGTTCATTAACAT 57.596 39.130 0.00 0.00 45.95 2.71
231 232 4.862902 CCACACAATGGGTTCATTAACA 57.137 40.909 0.00 0.00 45.95 2.41
243 244 3.885297 GGATATCAACCTCCCACACAATG 59.115 47.826 4.83 0.00 0.00 2.82
244 245 4.170468 GGATATCAACCTCCCACACAAT 57.830 45.455 4.83 0.00 0.00 2.71
245 246 3.644966 GGATATCAACCTCCCACACAA 57.355 47.619 4.83 0.00 0.00 3.33
251 252 1.375326 GCCGGGATATCAACCTCCC 59.625 63.158 2.18 0.00 46.59 4.30
252 253 0.693049 ATGCCGGGATATCAACCTCC 59.307 55.000 6.69 0.00 0.00 4.30
253 254 1.625818 AGATGCCGGGATATCAACCTC 59.374 52.381 9.09 0.00 0.00 3.85
254 255 1.349026 CAGATGCCGGGATATCAACCT 59.651 52.381 9.09 0.00 0.00 3.50
255 256 1.072331 ACAGATGCCGGGATATCAACC 59.928 52.381 9.09 0.00 0.00 3.77
256 257 2.146342 CACAGATGCCGGGATATCAAC 58.854 52.381 9.09 0.00 0.00 3.18
257 258 1.072173 CCACAGATGCCGGGATATCAA 59.928 52.381 9.09 0.00 0.00 2.57
258 259 0.686789 CCACAGATGCCGGGATATCA 59.313 55.000 9.09 0.00 0.00 2.15
259 260 0.674895 GCCACAGATGCCGGGATATC 60.675 60.000 9.09 0.00 0.00 1.63
260 261 1.376466 GCCACAGATGCCGGGATAT 59.624 57.895 9.09 1.45 0.00 1.63
261 262 2.818169 GGCCACAGATGCCGGGATA 61.818 63.158 9.09 0.00 39.48 2.59
262 263 4.195334 GGCCACAGATGCCGGGAT 62.195 66.667 8.79 8.79 39.48 3.85
289 290 5.904984 ACCATGTTAGGCATATCACCTAA 57.095 39.130 8.96 8.96 45.41 2.69
290 291 5.368230 TGAACCATGTTAGGCATATCACCTA 59.632 40.000 0.00 0.00 38.81 3.08
291 292 4.165950 TGAACCATGTTAGGCATATCACCT 59.834 41.667 0.00 0.00 41.57 4.00
292 293 4.460263 TGAACCATGTTAGGCATATCACC 58.540 43.478 0.00 0.00 35.74 4.02
293 294 5.126067 ACTGAACCATGTTAGGCATATCAC 58.874 41.667 0.00 0.00 35.74 3.06
294 295 5.372343 ACTGAACCATGTTAGGCATATCA 57.628 39.130 0.00 0.00 35.74 2.15
295 296 7.986085 ATTACTGAACCATGTTAGGCATATC 57.014 36.000 0.00 0.00 35.74 1.63
296 297 9.860650 TTTATTACTGAACCATGTTAGGCATAT 57.139 29.630 0.00 0.00 35.74 1.78
297 298 9.688091 TTTTATTACTGAACCATGTTAGGCATA 57.312 29.630 0.00 0.00 35.74 3.14
298 299 8.466798 GTTTTATTACTGAACCATGTTAGGCAT 58.533 33.333 0.00 0.00 38.60 4.40
299 300 7.448777 TGTTTTATTACTGAACCATGTTAGGCA 59.551 33.333 0.00 0.00 0.00 4.75
300 301 7.822658 TGTTTTATTACTGAACCATGTTAGGC 58.177 34.615 0.00 0.00 0.00 3.93
304 305 8.987890 GCAATTGTTTTATTACTGAACCATGTT 58.012 29.630 7.40 0.00 0.00 2.71
305 306 8.367156 AGCAATTGTTTTATTACTGAACCATGT 58.633 29.630 7.40 0.00 0.00 3.21
306 307 8.761575 AGCAATTGTTTTATTACTGAACCATG 57.238 30.769 7.40 0.00 0.00 3.66
307 308 9.777297 AAAGCAATTGTTTTATTACTGAACCAT 57.223 25.926 17.44 0.00 0.00 3.55
308 309 9.039870 CAAAGCAATTGTTTTATTACTGAACCA 57.960 29.630 18.32 0.00 34.16 3.67
309 310 9.255304 TCAAAGCAATTGTTTTATTACTGAACC 57.745 29.630 18.32 0.00 40.11 3.62
311 312 9.255304 GGTCAAAGCAATTGTTTTATTACTGAA 57.745 29.630 18.32 0.00 40.11 3.02
312 313 7.870445 GGGTCAAAGCAATTGTTTTATTACTGA 59.130 33.333 18.32 9.71 40.11 3.41
313 314 7.872483 AGGGTCAAAGCAATTGTTTTATTACTG 59.128 33.333 18.32 7.68 40.11 2.74
314 315 7.962441 AGGGTCAAAGCAATTGTTTTATTACT 58.038 30.769 18.32 12.22 40.11 2.24
315 316 7.870445 TGAGGGTCAAAGCAATTGTTTTATTAC 59.130 33.333 18.32 15.63 40.11 1.89
316 317 7.957002 TGAGGGTCAAAGCAATTGTTTTATTA 58.043 30.769 18.32 6.31 40.11 0.98
317 318 6.825610 TGAGGGTCAAAGCAATTGTTTTATT 58.174 32.000 18.32 4.66 40.11 1.40
318 319 6.418057 TGAGGGTCAAAGCAATTGTTTTAT 57.582 33.333 18.32 4.63 40.11 1.40
319 320 5.860941 TGAGGGTCAAAGCAATTGTTTTA 57.139 34.783 18.32 6.44 40.11 1.52
320 321 4.751767 TGAGGGTCAAAGCAATTGTTTT 57.248 36.364 13.80 13.80 40.11 2.43
321 322 4.751767 TTGAGGGTCAAAGCAATTGTTT 57.248 36.364 7.40 4.26 40.11 2.83
322 323 4.751767 TTTGAGGGTCAAAGCAATTGTT 57.248 36.364 7.40 0.00 41.02 2.83
323 324 4.751767 TTTTGAGGGTCAAAGCAATTGT 57.248 36.364 7.40 0.00 45.77 2.71
347 348 7.068226 ACCATAGCAAAGACAAGTACAGTTTTT 59.932 33.333 0.00 0.00 0.00 1.94
348 349 6.546034 ACCATAGCAAAGACAAGTACAGTTTT 59.454 34.615 0.00 0.00 0.00 2.43
349 350 6.062095 ACCATAGCAAAGACAAGTACAGTTT 58.938 36.000 0.00 0.00 0.00 2.66
355 356 4.628333 GCGTAACCATAGCAAAGACAAGTA 59.372 41.667 0.00 0.00 0.00 2.24
381 382 2.672651 TCGGTACACTCGCCCGAA 60.673 61.111 0.00 0.00 46.91 4.30
386 387 4.591852 CGAGATCGGTACACTCGC 57.408 61.111 14.29 1.71 44.67 5.03
423 424 2.389386 AAAAAGCGCCGCGATATCA 58.611 47.368 18.91 0.00 0.00 2.15
447 448 4.632538 AGAACTTGAAAAACCTTCCGTG 57.367 40.909 0.00 0.00 0.00 4.94
449 450 6.126568 TGTAAGAACTTGAAAAACCTTCCG 57.873 37.500 0.00 0.00 0.00 4.30
460 461 7.317390 GGTCCAAACTTTTTGTAAGAACTTGA 58.683 34.615 0.00 0.00 0.00 3.02
464 465 5.643664 ACGGTCCAAACTTTTTGTAAGAAC 58.356 37.500 0.00 0.00 0.00 3.01
468 469 3.065095 CGGACGGTCCAAACTTTTTGTAA 59.935 43.478 25.80 0.00 35.91 2.41
471 472 1.862411 GCGGACGGTCCAAACTTTTTG 60.862 52.381 25.80 8.10 35.91 2.44
477 478 3.723348 GCAGCGGACGGTCCAAAC 61.723 66.667 25.80 14.64 35.91 2.93
478 479 3.936203 AGCAGCGGACGGTCCAAA 61.936 61.111 25.80 0.00 35.91 3.28
543 546 7.391833 TGATTTTGTGCTTTGGGTTTAAAAGTT 59.608 29.630 0.00 0.00 37.05 2.66
553 556 4.440880 TGTTCTTGATTTTGTGCTTTGGG 58.559 39.130 0.00 0.00 0.00 4.12
707 713 9.249053 TCAGTGTGGCAAATAATAAAGGATTTA 57.751 29.630 0.00 0.00 45.80 1.40
716 722 4.013728 GGTGGTCAGTGTGGCAAATAATA 58.986 43.478 0.00 0.00 0.00 0.98
731 737 2.828868 GCTGACAGGTGGTGGTCA 59.171 61.111 4.26 0.00 41.44 4.02
791 797 3.274288 CTGACAATAAAGAGGAGCCCAC 58.726 50.000 0.00 0.00 0.00 4.61
868 875 1.078426 GGGTGGTTGGATGGACGAG 60.078 63.158 0.00 0.00 0.00 4.18
878 885 1.818674 GCTCATAAAGTGGGGTGGTTG 59.181 52.381 0.00 0.00 0.00 3.77
949 956 2.833151 TAGGCCGTTGGAGGGTGGAT 62.833 60.000 0.00 0.00 0.00 3.41
1037 1044 3.496870 GGGAAATCTGACACTGGTTCTGT 60.497 47.826 0.00 0.00 0.00 3.41
1060 1067 1.351017 CTTGCCCTCAACTTGTCCCTA 59.649 52.381 0.00 0.00 0.00 3.53
1075 1082 1.751927 CCTGGTGCTCCATCTTGCC 60.752 63.158 8.18 0.00 43.43 4.52
1123 1130 2.636830 CTTCTCCGTGATGCTTTCCAT 58.363 47.619 0.00 0.00 36.70 3.41
1150 1157 3.501396 GTGATCACCATGGCCACG 58.499 61.111 15.31 0.00 0.00 4.94
1200 1207 2.359088 GGTAACTCCGGTGTGTCCT 58.641 57.895 10.44 0.00 0.00 3.85
1237 1247 2.509561 GACGCCCTTCTTCTCGCC 60.510 66.667 0.00 0.00 0.00 5.54
1255 1265 2.926838 GCTTCTCCTTGATGTTCTCGAC 59.073 50.000 0.00 0.00 0.00 4.20
1327 1337 1.968017 CTGTGGTGGCATGCGTCTT 60.968 57.895 12.44 0.00 0.00 3.01
1393 1403 0.034059 CTCTTGTTCTCACCGGTGCT 59.966 55.000 30.25 0.00 0.00 4.40
1416 1426 3.376546 GCTTGTCCTTGATCTTGTCCATC 59.623 47.826 0.00 0.00 0.00 3.51
1480 1490 4.446413 AAAGTAGCGGGTCGGGCG 62.446 66.667 0.00 0.00 35.00 6.13
1481 1491 2.818274 CAAAGTAGCGGGTCGGGC 60.818 66.667 0.00 0.00 0.00 6.13
1482 1492 2.818274 GCAAAGTAGCGGGTCGGG 60.818 66.667 0.00 0.00 0.00 5.14
1483 1493 2.047655 TGCAAAGTAGCGGGTCGG 60.048 61.111 0.00 0.00 37.31 4.79
1484 1494 0.669318 TTCTGCAAAGTAGCGGGTCG 60.669 55.000 0.00 0.00 41.26 4.79
1485 1495 1.739067 ATTCTGCAAAGTAGCGGGTC 58.261 50.000 0.00 0.00 41.26 4.46
1486 1496 3.560636 ATATTCTGCAAAGTAGCGGGT 57.439 42.857 0.00 0.00 41.26 5.28
1487 1497 7.849804 ATTATATATTCTGCAAAGTAGCGGG 57.150 36.000 0.00 0.00 41.26 6.13
1545 1556 2.632377 CGCTCCTCCATGAAAGCTTAA 58.368 47.619 0.00 0.00 32.55 1.85
1546 1557 1.743772 GCGCTCCTCCATGAAAGCTTA 60.744 52.381 0.00 0.00 32.55 3.09
1548 1559 1.451028 GCGCTCCTCCATGAAAGCT 60.451 57.895 0.00 0.00 32.55 3.74
1549 1560 2.476320 GGCGCTCCTCCATGAAAGC 61.476 63.158 7.64 0.00 0.00 3.51
1552 1563 3.797353 GGGGCGCTCCTCCATGAA 61.797 66.667 22.28 0.00 35.33 2.57
1554 1565 2.916527 AATTGGGGCGCTCCTCCATG 62.917 60.000 29.93 0.00 34.21 3.66
1555 1566 2.631012 GAATTGGGGCGCTCCTCCAT 62.631 60.000 29.93 14.24 34.21 3.41
1556 1567 3.338250 AATTGGGGCGCTCCTCCA 61.338 61.111 29.93 17.17 35.33 3.86
1557 1568 2.517166 GAATTGGGGCGCTCCTCC 60.517 66.667 29.93 10.28 35.33 4.30
1558 1569 1.152881 ATGAATTGGGGCGCTCCTC 60.153 57.895 29.93 17.93 35.33 3.71
1559 1570 1.152881 GATGAATTGGGGCGCTCCT 60.153 57.895 29.93 7.19 35.33 3.69
1560 1571 1.152881 AGATGAATTGGGGCGCTCC 60.153 57.895 22.87 22.87 0.00 4.70
1561 1572 1.450531 CCAGATGAATTGGGGCGCTC 61.451 60.000 7.64 1.18 31.87 5.03
1562 1573 1.454479 CCAGATGAATTGGGGCGCT 60.454 57.895 7.64 0.00 31.87 5.92
1563 1574 3.122850 CCAGATGAATTGGGGCGC 58.877 61.111 0.00 0.00 31.87 6.53
1568 1579 5.665916 AAGCTTAAACCCAGATGAATTGG 57.334 39.130 0.00 0.00 35.41 3.16
1569 1580 6.690530 TGAAAGCTTAAACCCAGATGAATTG 58.309 36.000 0.00 0.00 0.00 2.32
1570 1581 6.916360 TGAAAGCTTAAACCCAGATGAATT 57.084 33.333 0.00 0.00 0.00 2.17
1571 1582 6.127253 CCATGAAAGCTTAAACCCAGATGAAT 60.127 38.462 0.00 0.00 0.00 2.57
1573 1584 4.706476 CCATGAAAGCTTAAACCCAGATGA 59.294 41.667 0.00 0.00 0.00 2.92
1619 1633 8.535592 TCAAAGTATGCAAATTGTAAACAAACG 58.464 29.630 0.00 0.00 39.55 3.60
1646 1660 6.017192 GGTTGAACCAAAAGGAAATTTCCATG 60.017 38.462 33.39 26.77 43.32 3.66
1647 1661 6.061441 GGTTGAACCAAAAGGAAATTTCCAT 58.939 36.000 33.39 22.66 43.32 3.41
1660 1674 0.387202 CATGCACCGGTTGAACCAAA 59.613 50.000 15.58 0.00 38.47 3.28
1711 1725 8.034804 AGAACAGACTTGCAAACTTAACATTTT 58.965 29.630 0.00 0.00 0.00 1.82
1864 1974 7.849804 TCATCATCATCATCATCATCATCAC 57.150 36.000 0.00 0.00 0.00 3.06
1877 1987 5.803470 GCCTTCCTCATCATCATCATCATCA 60.803 44.000 0.00 0.00 0.00 3.07
1878 1988 4.636648 GCCTTCCTCATCATCATCATCATC 59.363 45.833 0.00 0.00 0.00 2.92
1879 1989 4.042934 TGCCTTCCTCATCATCATCATCAT 59.957 41.667 0.00 0.00 0.00 2.45
1880 1990 3.393278 TGCCTTCCTCATCATCATCATCA 59.607 43.478 0.00 0.00 0.00 3.07
1881 1991 4.004314 CTGCCTTCCTCATCATCATCATC 58.996 47.826 0.00 0.00 0.00 2.92
1882 1992 3.244946 CCTGCCTTCCTCATCATCATCAT 60.245 47.826 0.00 0.00 0.00 2.45
1883 1993 2.105993 CCTGCCTTCCTCATCATCATCA 59.894 50.000 0.00 0.00 0.00 3.07
1884 1994 2.371179 TCCTGCCTTCCTCATCATCATC 59.629 50.000 0.00 0.00 0.00 2.92
1885 1995 2.415624 TCCTGCCTTCCTCATCATCAT 58.584 47.619 0.00 0.00 0.00 2.45
1886 1996 1.883678 TCCTGCCTTCCTCATCATCA 58.116 50.000 0.00 0.00 0.00 3.07
1887 1997 2.848691 CTTCCTGCCTTCCTCATCATC 58.151 52.381 0.00 0.00 0.00 2.92
1888 1998 1.133853 GCTTCCTGCCTTCCTCATCAT 60.134 52.381 0.00 0.00 35.15 2.45
1889 1999 0.254178 GCTTCCTGCCTTCCTCATCA 59.746 55.000 0.00 0.00 35.15 3.07
1890 2000 0.545646 AGCTTCCTGCCTTCCTCATC 59.454 55.000 0.00 0.00 44.23 2.92
1891 2001 0.255318 CAGCTTCCTGCCTTCCTCAT 59.745 55.000 0.00 0.00 44.23 2.90
1892 2002 1.681666 CAGCTTCCTGCCTTCCTCA 59.318 57.895 0.00 0.00 44.23 3.86
1938 2048 1.000938 CTTGTCTTTGCTTGCCTCCAC 60.001 52.381 0.00 0.00 0.00 4.02
1945 2055 3.973657 AGCATTGACTTGTCTTTGCTTG 58.026 40.909 18.23 4.24 37.12 4.01
1946 2056 3.005155 GGAGCATTGACTTGTCTTTGCTT 59.995 43.478 21.98 12.31 40.29 3.91
1951 2061 6.899393 TTAATTGGAGCATTGACTTGTCTT 57.101 33.333 2.35 0.00 0.00 3.01
2065 2175 8.837788 AAGAATTGATGCGACATATAGAATGA 57.162 30.769 0.00 0.00 0.00 2.57
2211 2321 9.945904 TGTATGGACTGTTTATGTACAACAATA 57.054 29.630 0.00 0.00 33.74 1.90
2277 2387 7.651704 ACAAACACTTTTGGATGCATAGTTTAC 59.348 33.333 0.00 0.00 45.65 2.01
2336 2446 0.896940 TCGTCGGGGACAAGCTTACT 60.897 55.000 0.00 0.00 32.09 2.24
2342 2452 2.227089 CTCCCTTCGTCGGGGACAAG 62.227 65.000 5.25 0.00 46.99 3.16
2403 2513 1.382146 ACCTTCTTATCGGCGGGGA 60.382 57.895 7.21 0.00 0.00 4.81
2431 2541 2.853914 GGCTTGTCGACGCTGAAC 59.146 61.111 11.62 0.00 0.00 3.18
2432 2542 2.733218 CGGCTTGTCGACGCTGAA 60.733 61.111 16.56 2.46 37.31 3.02
2433 2543 4.717629 CCGGCTTGTCGACGCTGA 62.718 66.667 21.46 0.00 44.88 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.