Multiple sequence alignment - TraesCS7A01G559600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G559600 chr7A 100.000 3501 0 0 1 3501 731572406 731568906 0.000000e+00 6466.0
1 TraesCS7A01G559600 chr7A 87.441 1688 183 13 956 2632 675021880 675023549 0.000000e+00 1916.0
2 TraesCS7A01G559600 chr7A 84.796 1664 190 37 1003 2622 731000689 731002333 0.000000e+00 1613.0
3 TraesCS7A01G559600 chr7A 80.870 805 90 30 2729 3500 675023585 675024358 3.030000e-160 575.0
4 TraesCS7A01G559600 chr7A 80.870 805 91 26 2729 3500 675026341 675027115 3.030000e-160 575.0
5 TraesCS7A01G559600 chr7A 87.879 462 51 3 1002 1459 730881201 730881661 3.980000e-149 538.0
6 TraesCS7A01G559600 chr7A 80.872 711 84 33 2812 3493 731012490 731013177 2.410000e-141 512.0
7 TraesCS7A01G559600 chr7A 81.229 602 44 31 2931 3500 730883154 730883718 4.180000e-114 422.0
8 TraesCS7A01G559600 chr7A 78.008 723 81 38 2812 3493 731221351 731222036 1.970000e-102 383.0
9 TraesCS7A01G559600 chr7A 82.472 445 36 21 2847 3263 731505616 731505186 5.560000e-93 351.0
10 TraesCS7A01G559600 chr7A 79.596 446 54 21 3078 3493 731188526 731188964 5.720000e-73 285.0
11 TraesCS7A01G559600 chr7A 79.372 446 55 21 3078 3493 731159564 731160002 2.660000e-71 279.0
12 TraesCS7A01G559600 chr7A 79.148 446 56 21 3078 3493 731129860 731130298 1.240000e-69 274.0
13 TraesCS7A01G559600 chr7A 82.432 222 32 5 2467 2681 731505407 731505186 1.660000e-43 187.0
14 TraesCS7A01G559600 chr7A 78.112 233 36 10 2458 2682 731012725 731012950 2.190000e-27 134.0
15 TraesCS7A01G559600 chr7A 85.227 88 8 4 2856 2943 726431860 726431778 6.230000e-13 86.1
16 TraesCS7A01G559600 chr7D 94.393 3549 126 28 1 3501 634649659 634653182 0.000000e+00 5384.0
17 TraesCS7A01G559600 chr7D 86.543 1724 199 20 973 2678 583548534 583550242 0.000000e+00 1868.0
18 TraesCS7A01G559600 chr7D 84.595 1519 188 29 994 2498 634659523 634661009 0.000000e+00 1467.0
19 TraesCS7A01G559600 chr7D 85.618 591 38 14 1 547 634643339 634643926 8.430000e-161 577.0
20 TraesCS7A01G559600 chr7D 80.521 806 93 32 2729 3500 583550255 583551030 8.490000e-156 560.0
21 TraesCS7A01G559600 chr7D 81.549 710 88 22 2812 3493 634661026 634661720 2.380000e-151 545.0
22 TraesCS7A01G559600 chr7D 82.394 568 64 18 2728 3274 634759585 634759033 2.460000e-126 462.0
23 TraesCS7A01G559600 chr7D 81.498 227 36 5 2458 2678 634661260 634661486 7.720000e-42 182.0
24 TraesCS7A01G559600 chr7D 82.955 88 10 4 2856 2943 630481513 630481431 1.350000e-09 75.0
25 TraesCS7A01G559600 chr7B 94.273 1554 80 6 1006 2554 741624973 741623424 0.000000e+00 2368.0
26 TraesCS7A01G559600 chr7B 83.034 1279 197 13 1410 2683 651134871 651136134 0.000000e+00 1142.0
27 TraesCS7A01G559600 chr7B 84.802 1112 140 15 1565 2669 741482663 741483752 0.000000e+00 1090.0
28 TraesCS7A01G559600 chr7B 85.487 1006 131 9 1551 2554 741541915 741542907 0.000000e+00 1035.0
29 TraesCS7A01G559600 chr7B 89.567 508 31 9 958 1449 741541408 741541909 2.970000e-175 625.0
30 TraesCS7A01G559600 chr7B 92.526 388 23 2 1073 1454 741482195 741482582 5.110000e-153 551.0
31 TraesCS7A01G559600 chr7B 83.403 476 45 15 2812 3264 741542906 741543370 9.040000e-111 411.0
32 TraesCS7A01G559600 chr7B 81.973 527 48 24 3001 3500 741483934 741484440 1.510000e-108 403.0
33 TraesCS7A01G559600 chr7B 82.798 436 41 13 2812 3225 741623425 741623002 3.320000e-95 359.0
34 TraesCS7A01G559600 chr7B 88.991 218 16 6 2796 3012 651141917 651142127 2.680000e-66 263.0
35 TraesCS7A01G559600 chr7B 77.011 435 47 26 3011 3416 651142241 651142651 2.130000e-47 200.0
36 TraesCS7A01G559600 chr7B 86.264 182 21 4 2825 3006 741666964 741666787 9.920000e-46 195.0
37 TraesCS7A01G559600 chr7B 80.603 232 37 7 2458 2682 741543140 741543370 4.650000e-39 172.0
38 TraesCS7A01G559600 chr4B 85.470 1576 180 21 995 2554 625072799 625074341 0.000000e+00 1596.0
39 TraesCS7A01G559600 chr4B 81.215 708 84 23 2812 3479 625074473 625075171 3.100000e-145 525.0
40 TraesCS7A01G559600 chr4B 94.444 54 2 1 3068 3121 625074271 625074323 8.050000e-12 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G559600 chr7A 731568906 731572406 3500 True 6466.000000 6466 100.000000 1 3501 1 chr7A.!!$R2 3500
1 TraesCS7A01G559600 chr7A 731000689 731002333 1644 False 1613.000000 1613 84.796000 1003 2622 1 chr7A.!!$F1 1619
2 TraesCS7A01G559600 chr7A 675021880 675027115 5235 False 1022.000000 1916 83.060333 956 3500 3 chr7A.!!$F6 2544
3 TraesCS7A01G559600 chr7A 730881201 730883718 2517 False 480.000000 538 84.554000 1002 3500 2 chr7A.!!$F7 2498
4 TraesCS7A01G559600 chr7A 731221351 731222036 685 False 383.000000 383 78.008000 2812 3493 1 chr7A.!!$F5 681
5 TraesCS7A01G559600 chr7A 731012490 731013177 687 False 323.000000 512 79.492000 2458 3493 2 chr7A.!!$F8 1035
6 TraesCS7A01G559600 chr7D 634649659 634653182 3523 False 5384.000000 5384 94.393000 1 3501 1 chr7D.!!$F2 3500
7 TraesCS7A01G559600 chr7D 583548534 583551030 2496 False 1214.000000 1868 83.532000 973 3500 2 chr7D.!!$F3 2527
8 TraesCS7A01G559600 chr7D 634659523 634661720 2197 False 731.333333 1467 82.547333 994 3493 3 chr7D.!!$F4 2499
9 TraesCS7A01G559600 chr7D 634643339 634643926 587 False 577.000000 577 85.618000 1 547 1 chr7D.!!$F1 546
10 TraesCS7A01G559600 chr7D 634759033 634759585 552 True 462.000000 462 82.394000 2728 3274 1 chr7D.!!$R2 546
11 TraesCS7A01G559600 chr7B 741623002 741624973 1971 True 1363.500000 2368 88.535500 1006 3225 2 chr7B.!!$R2 2219
12 TraesCS7A01G559600 chr7B 651134871 651136134 1263 False 1142.000000 1142 83.034000 1410 2683 1 chr7B.!!$F1 1273
13 TraesCS7A01G559600 chr7B 741482195 741484440 2245 False 681.333333 1090 86.433667 1073 3500 3 chr7B.!!$F3 2427
14 TraesCS7A01G559600 chr7B 741541408 741543370 1962 False 560.750000 1035 84.765000 958 3264 4 chr7B.!!$F4 2306
15 TraesCS7A01G559600 chr7B 651141917 651142651 734 False 231.500000 263 83.001000 2796 3416 2 chr7B.!!$F2 620
16 TraesCS7A01G559600 chr4B 625072799 625075171 2372 False 734.466667 1596 87.043000 995 3479 3 chr4B.!!$F1 2484

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
198 199 0.033601 ACCACCTTTGCACCTGAACA 60.034 50.0 0.00 0.0 0.00 3.18 F
286 311 0.105039 AGCCGGAACTCAATCGGATC 59.895 55.0 5.05 0.0 45.96 3.36 F
2160 2393 0.107654 GAAGGTCATACCGCTGCCTT 60.108 55.0 0.00 0.0 44.90 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1920 2144 1.013596 CTCAAAGTGCGTGTGTCCAA 58.986 50.000 0.0 0.0 0.00 3.53 R
2245 2478 3.127548 GCAATCCACGTTGACATTCTCAT 59.872 43.478 0.0 0.0 0.00 2.90 R
3346 6694 5.555966 TCAACTCACTGGTTATGCAACATA 58.444 37.500 0.0 0.0 36.29 2.29 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 5.643379 TCAGGAATAAATGCACTTCCAAC 57.357 39.130 16.89 0.00 40.77 3.77
41 42 0.593128 AATGCACTTCCAACAGCGAC 59.407 50.000 0.00 0.00 0.00 5.19
42 43 1.568612 ATGCACTTCCAACAGCGACG 61.569 55.000 0.00 0.00 0.00 5.12
72 73 0.391597 CCACCACTACCGCCGATAAT 59.608 55.000 0.00 0.00 0.00 1.28
76 77 3.192844 CACCACTACCGCCGATAATATCT 59.807 47.826 0.00 0.00 0.00 1.98
133 134 0.599060 TCACGCATCTGTCCAACGTA 59.401 50.000 0.00 0.00 34.79 3.57
134 135 1.203758 TCACGCATCTGTCCAACGTAT 59.796 47.619 0.00 0.00 34.79 3.06
198 199 0.033601 ACCACCTTTGCACCTGAACA 60.034 50.000 0.00 0.00 0.00 3.18
250 275 3.758715 CACCGGTGCATGTCATCTA 57.241 52.632 24.02 0.00 0.00 1.98
279 304 1.757118 CAGGATCTAGCCGGAACTCAA 59.243 52.381 5.05 0.00 0.00 3.02
286 311 0.105039 AGCCGGAACTCAATCGGATC 59.895 55.000 5.05 0.00 45.96 3.36
312 338 2.871453 TCTCATATGGCTACGCTACCA 58.129 47.619 2.13 0.00 41.06 3.25
334 360 1.497286 AGAAACCACCACCAAAGGCTA 59.503 47.619 0.00 0.00 0.00 3.93
346 372 4.022068 CACCAAAGGCTAACATGATGTTGT 60.022 41.667 20.29 4.61 41.30 3.32
374 400 0.666577 GGCGAGCTCAACACGTTAGT 60.667 55.000 15.40 0.00 34.56 2.24
411 437 1.524621 CCCTTGTAGGCTGCCGATG 60.525 63.158 13.96 3.92 32.73 3.84
464 490 1.228337 ACCCACCAAAACCGCTACC 60.228 57.895 0.00 0.00 0.00 3.18
491 517 1.032657 CCGTCGAGTCACCAGAGGAT 61.033 60.000 0.00 0.00 0.00 3.24
497 523 4.147449 TCACCAGAGGATGCCGCG 62.147 66.667 0.00 0.00 0.00 6.46
589 615 1.541233 CGCAGGGTCTTAGGCCAATAG 60.541 57.143 5.01 0.00 0.00 1.73
672 698 1.637478 TTCCGCCCGTAACGAAATGC 61.637 55.000 0.00 0.00 0.00 3.56
680 706 4.034279 GCCCGTAACGAAATGCTTTATGTA 59.966 41.667 0.00 0.00 0.00 2.29
711 741 5.765182 ACTTTTATGGAGCCGAGAATTATGG 59.235 40.000 0.00 0.00 0.00 2.74
930 960 9.317827 ACTAAACTAGTAGAGTACAATTTCCCA 57.682 33.333 3.59 0.00 37.44 4.37
933 963 6.641474 ACTAGTAGAGTACAATTTCCCAAGC 58.359 40.000 3.59 0.00 36.27 4.01
934 964 5.763876 AGTAGAGTACAATTTCCCAAGCT 57.236 39.130 0.00 0.00 0.00 3.74
935 965 6.128138 AGTAGAGTACAATTTCCCAAGCTT 57.872 37.500 0.00 0.00 0.00 3.74
936 966 6.543735 AGTAGAGTACAATTTCCCAAGCTTT 58.456 36.000 0.00 0.00 0.00 3.51
937 967 7.686434 AGTAGAGTACAATTTCCCAAGCTTTA 58.314 34.615 0.00 0.00 0.00 1.85
1326 1372 1.449601 GCCGCCGATTTCTCCTTCA 60.450 57.895 0.00 0.00 0.00 3.02
1357 1406 2.029290 TCGTTTCTTCTGCCTCCTACAC 60.029 50.000 0.00 0.00 0.00 2.90
1811 2016 6.288294 GTCCACAACTATGCAATGGTCTATA 58.712 40.000 0.00 0.00 36.85 1.31
1867 2091 0.746204 TCCTGTTTTGACTGCGTGCA 60.746 50.000 0.00 0.00 0.00 4.57
1913 2137 5.629133 GCCTTATGACAGGAGTGACCATTTA 60.629 44.000 0.00 0.00 42.04 1.40
2152 2385 3.055094 TGGAAGCTTGAGAAGGTCATACC 60.055 47.826 2.10 0.00 38.49 2.73
2160 2393 0.107654 GAAGGTCATACCGCTGCCTT 60.108 55.000 0.00 0.00 44.90 4.35
2245 2478 3.034635 GCACTCTAGAAGGGATTCCTGA 58.965 50.000 0.00 0.00 44.07 3.86
2273 2506 2.000447 GTCAACGTGGATTGCTACTCC 59.000 52.381 0.00 0.00 0.00 3.85
2364 2597 3.737263 ACCCTCCCATACTTTAGCTTCT 58.263 45.455 0.00 0.00 0.00 2.85
2451 2686 0.178950 TGGGTTTGGGTGCATGCTTA 60.179 50.000 20.33 0.00 0.00 3.09
2463 2831 1.468736 GCATGCTTAGCTTGTTCTGCC 60.469 52.381 18.92 0.75 36.33 4.85
2476 2844 1.602377 GTTCTGCCCGCATGGTTATAC 59.398 52.381 0.00 0.00 36.04 1.47
2488 2856 7.361201 CCCGCATGGTTATACAGAGAATTAATG 60.361 40.741 0.00 0.00 0.00 1.90
2684 3071 1.783140 GCTTTCACGCTTGCTTCTTTG 59.217 47.619 0.00 0.00 0.00 2.77
2692 3079 5.468746 TCACGCTTGCTTCTTTGTATTTAGT 59.531 36.000 0.00 0.00 0.00 2.24
2748 3135 7.347222 TGGGAGTACATCTTTGGTCATACTTAT 59.653 37.037 0.00 0.00 0.00 1.73
2759 3146 9.559958 CTTTGGTCATACTTATCAATTTCACAC 57.440 33.333 0.00 0.00 0.00 3.82
2805 3192 5.650105 TGTTCAAAACAAGAACGTTGCACG 61.650 41.667 5.00 7.07 46.34 5.34
3062 6340 5.385617 CAGTTGCTTCAAATTTCTACTCCG 58.614 41.667 0.00 0.00 0.00 4.63
3063 6341 4.455877 AGTTGCTTCAAATTTCTACTCCGG 59.544 41.667 0.00 0.00 0.00 5.14
3260 6584 1.533625 TAATGGCTTTCACGCTTGCT 58.466 45.000 0.00 0.00 0.00 3.91
3346 6694 9.777297 AATTTAATGGCAATGTTCAAAGTAAGT 57.223 25.926 0.00 0.00 0.00 2.24
3389 6738 1.981256 TGTTTGAAGGCCTTGAGTCC 58.019 50.000 26.25 8.65 0.00 3.85
3469 6822 5.407387 TCGTTTGTTATGGTCTGCTAAGTTC 59.593 40.000 0.00 0.00 0.00 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 2.300850 TTATCGGCGGTAGTGGTGGC 62.301 60.000 7.21 0.00 0.00 5.01
72 73 1.133136 AGGAGAAAGCCCGCCTAGATA 60.133 52.381 0.00 0.00 34.49 1.98
76 77 0.260816 TCTAGGAGAAAGCCCGCCTA 59.739 55.000 0.00 0.00 37.52 3.93
133 134 2.045340 GTAGGGTTGTGCGGGCAT 60.045 61.111 0.00 0.00 0.00 4.40
134 135 4.690719 CGTAGGGTTGTGCGGGCA 62.691 66.667 0.00 0.00 0.00 5.36
250 275 3.511934 CCGGCTAGATCCTGCTTATTAGT 59.488 47.826 0.00 0.00 0.00 2.24
279 304 4.343526 GCCATATGAGATGGTAGATCCGAT 59.656 45.833 8.03 0.00 41.17 4.18
312 338 1.775385 CCTTTGGTGGTGGTTTCTGT 58.225 50.000 0.00 0.00 0.00 3.41
334 360 3.567530 CATCACGCAACAACATCATGTT 58.432 40.909 0.00 0.00 44.08 2.71
346 372 2.815211 GAGCTCGCCATCACGCAA 60.815 61.111 0.00 0.00 0.00 4.85
374 400 0.532573 GCCTCGACTCAATGTCCTCA 59.467 55.000 0.00 0.00 42.49 3.86
378 404 0.250513 AAGGGCCTCGACTCAATGTC 59.749 55.000 6.46 0.00 42.06 3.06
383 409 0.970937 CCTACAAGGGCCTCGACTCA 60.971 60.000 6.46 0.00 0.00 3.41
384 410 1.817209 CCTACAAGGGCCTCGACTC 59.183 63.158 6.46 0.00 0.00 3.36
385 411 2.359967 GCCTACAAGGGCCTCGACT 61.360 63.158 6.46 0.00 45.92 4.18
411 437 1.497722 GTCTACTTGGCGTTGCAGC 59.502 57.895 0.00 0.00 0.00 5.25
419 445 0.947180 TTTGCGTCCGTCTACTTGGC 60.947 55.000 0.00 0.00 0.00 4.52
464 490 2.182030 GACTCGACGGCTTCCCTG 59.818 66.667 0.00 0.00 0.00 4.45
497 523 3.989787 CCCCTTTGGTTGCACGGC 61.990 66.667 0.00 0.00 0.00 5.68
582 608 0.385390 CCAAATGGGACGCTATTGGC 59.615 55.000 11.81 0.00 40.01 4.52
680 706 6.235664 TCTCGGCTCCATAAAAGTTAGTTTT 58.764 36.000 3.18 3.18 41.45 2.43
711 741 6.872628 ACTGTAAAGTGTAGTTTAAAGCCC 57.127 37.500 8.61 0.00 32.41 5.19
765 795 5.157781 GCACTATATCTCCGCTAAAGTGAG 58.842 45.833 3.89 0.00 35.93 3.51
916 946 6.564328 CCATAAAGCTTGGGAAATTGTACTC 58.436 40.000 0.00 0.00 0.00 2.59
918 948 5.105351 AGCCATAAAGCTTGGGAAATTGTAC 60.105 40.000 14.40 0.00 41.41 2.90
920 950 3.840078 AGCCATAAAGCTTGGGAAATTGT 59.160 39.130 14.40 0.00 41.41 2.71
921 951 4.476628 AGCCATAAAGCTTGGGAAATTG 57.523 40.909 14.40 0.00 41.41 2.32
932 962 2.158943 ACCTCCTACGAAGCCATAAAGC 60.159 50.000 0.00 0.00 0.00 3.51
933 963 3.118738 ACACCTCCTACGAAGCCATAAAG 60.119 47.826 0.00 0.00 0.00 1.85
934 964 2.835764 ACACCTCCTACGAAGCCATAAA 59.164 45.455 0.00 0.00 0.00 1.40
935 965 2.429610 GACACCTCCTACGAAGCCATAA 59.570 50.000 0.00 0.00 0.00 1.90
936 966 2.029623 GACACCTCCTACGAAGCCATA 58.970 52.381 0.00 0.00 0.00 2.74
937 967 0.824759 GACACCTCCTACGAAGCCAT 59.175 55.000 0.00 0.00 0.00 4.40
1326 1372 2.847435 GAAGAAACGACGGCCGGGAT 62.847 60.000 31.76 13.01 43.93 3.85
1811 2016 3.532102 AGGGAAAATAGGACACTCCACT 58.468 45.455 0.00 0.00 39.61 4.00
1867 2091 1.478510 CTGTCCAGTAGAAGCATCCGT 59.521 52.381 0.00 0.00 0.00 4.69
1920 2144 1.013596 CTCAAAGTGCGTGTGTCCAA 58.986 50.000 0.00 0.00 0.00 3.53
2087 2320 4.591072 AGAGAGGTATGATAGAGGGCAAAC 59.409 45.833 0.00 0.00 0.00 2.93
2160 2393 5.830799 ATGGAATAGTCATGATACTGCCA 57.169 39.130 0.00 5.37 33.77 4.92
2237 2470 4.872691 ACGTTGACATTCTCATCAGGAATC 59.127 41.667 0.00 0.00 31.90 2.52
2245 2478 3.127548 GCAATCCACGTTGACATTCTCAT 59.872 43.478 0.00 0.00 0.00 2.90
2273 2506 4.694760 TCCATATGTCTTGACCTCCATG 57.305 45.455 1.24 0.00 0.00 3.66
2451 2686 2.034687 ATGCGGGCAGAACAAGCT 59.965 55.556 0.00 0.00 0.00 3.74
2463 2831 7.387673 TCATTAATTCTCTGTATAACCATGCGG 59.612 37.037 0.00 0.00 38.77 5.69
2488 2856 7.454225 AGGTAGTCAAGCCCAATAGAATAATC 58.546 38.462 0.00 0.00 0.00 1.75
2492 2860 5.044846 ACAAGGTAGTCAAGCCCAATAGAAT 60.045 40.000 0.00 0.00 0.00 2.40
2700 3087 8.434392 TCCCACTGTAAACTAACATAAGACTTT 58.566 33.333 0.00 0.00 0.00 2.66
2702 3089 7.234988 ACTCCCACTGTAAACTAACATAAGACT 59.765 37.037 0.00 0.00 0.00 3.24
2703 3090 7.384477 ACTCCCACTGTAAACTAACATAAGAC 58.616 38.462 0.00 0.00 0.00 3.01
2710 3097 6.932947 AGATGTACTCCCACTGTAAACTAAC 58.067 40.000 0.00 0.00 0.00 2.34
2748 3135 6.814043 TGTTGAATGAATGGTGTGAAATTGA 58.186 32.000 0.00 0.00 0.00 2.57
2805 3192 7.493367 AGTACTCAAATATCAGCTTACAGGTC 58.507 38.462 0.00 0.00 0.00 3.85
3062 6340 9.908152 GCCCAATAGAACAATAATATAAACACC 57.092 33.333 0.00 0.00 0.00 4.16
3324 6671 9.019656 ACATACTTACTTTGAACATTGCCATTA 57.980 29.630 0.00 0.00 0.00 1.90
3341 6689 6.594159 ACTCACTGGTTATGCAACATACTTAC 59.406 38.462 0.00 0.00 36.29 2.34
3346 6694 5.555966 TCAACTCACTGGTTATGCAACATA 58.444 37.500 0.00 0.00 36.29 2.29
3449 6802 6.204688 CACAAGAACTTAGCAGACCATAACAA 59.795 38.462 0.00 0.00 0.00 2.83
3469 6822 5.565592 TGCAGCTTGGAAATATACACAAG 57.434 39.130 0.00 0.00 42.31 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.