Multiple sequence alignment - TraesCS7A01G559400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G559400 chr7A 100.000 4034 0 0 1 4034 731274214 731270181 0.000000e+00 7450
1 TraesCS7A01G559400 chr7A 96.552 87 3 0 614 700 138960741 138960827 1.170000e-30 145
2 TraesCS7A01G559400 chr7A 92.857 98 7 0 610 707 471816094 471816191 4.200000e-30 143
3 TraesCS7A01G559400 chr7D 95.499 1622 51 12 699 2311 634687099 634688707 0.000000e+00 2571
4 TraesCS7A01G559400 chr7D 99.332 449 3 0 2586 3034 634688928 634689376 0.000000e+00 813
5 TraesCS7A01G559400 chr7D 85.030 501 44 15 3546 4034 634691613 634692094 7.840000e-132 481
6 TraesCS7A01G559400 chr7D 86.333 439 29 12 129 566 634686667 634687075 2.210000e-122 449
7 TraesCS7A01G559400 chr7D 85.831 367 33 14 701 1063 609055599 609055248 4.920000e-99 372
8 TraesCS7A01G559400 chr7D 91.176 102 8 1 608 708 330808226 330808125 1.960000e-28 137
9 TraesCS7A01G559400 chr7D 84.821 112 8 2 17 128 634686295 634686397 1.980000e-18 104
10 TraesCS7A01G559400 chr7B 95.229 1551 62 8 699 2245 741569925 741571467 0.000000e+00 2444
11 TraesCS7A01G559400 chr7B 95.372 497 18 5 2556 3047 741571522 741572018 0.000000e+00 785
12 TraesCS7A01G559400 chr7B 88.267 375 34 6 130 496 741569473 741569845 1.330000e-119 440
13 TraesCS7A01G559400 chr7B 80.259 309 26 16 3544 3819 741573567 741573873 2.460000e-47 200
14 TraesCS7A01G559400 chr7B 91.791 134 10 1 3901 4033 741573891 741574024 6.890000e-43 185
15 TraesCS7A01G559400 chr7B 98.795 83 1 0 530 612 741569844 741569926 9.030000e-32 148
16 TraesCS7A01G559400 chr4B 84.504 484 52 11 128 611 101791680 101792140 1.320000e-124 457
17 TraesCS7A01G559400 chr4B 85.286 367 35 14 701 1063 218594334 218593983 1.070000e-95 361
18 TraesCS7A01G559400 chr4B 84.741 367 37 14 701 1063 352357473 352357824 2.310000e-92 350
19 TraesCS7A01G559400 chr1B 85.831 367 33 10 129 487 233274418 233274063 4.920000e-99 372
20 TraesCS7A01G559400 chr1B 98.734 79 1 0 534 612 233266436 233266358 1.510000e-29 141
21 TraesCS7A01G559400 chr1B 98.734 79 1 0 534 612 233274061 233273983 1.510000e-29 141
22 TraesCS7A01G559400 chr1B 89.815 108 7 4 595 700 296490724 296490619 7.030000e-28 135
23 TraesCS7A01G559400 chr2B 84.800 375 38 14 701 1071 48238263 48237904 3.830000e-95 359
24 TraesCS7A01G559400 chr5B 85.246 366 31 16 701 1062 617305038 617304692 4.960000e-94 355
25 TraesCS7A01G559400 chr5B 85.771 253 24 7 359 611 617305280 617305040 1.440000e-64 257
26 TraesCS7A01G559400 chr6B 84.741 367 37 13 701 1063 24753070 24753421 2.310000e-92 350
27 TraesCS7A01G559400 chr2A 84.741 367 33 17 701 1063 472415181 472415528 2.980000e-91 346
28 TraesCS7A01G559400 chr2A 85.375 253 26 5 359 611 627184673 627184432 6.690000e-63 252
29 TraesCS7A01G559400 chr2A 87.864 206 18 4 406 611 472414981 472415179 6.740000e-58 235
30 TraesCS7A01G559400 chr2A 86.802 197 19 4 130 326 627184862 627184673 3.160000e-51 213
31 TraesCS7A01G559400 chrUn 87.437 199 16 7 130 326 340881422 340881613 1.890000e-53 220
32 TraesCS7A01G559400 chr2D 87.437 199 16 7 130 326 19724492 19724683 1.890000e-53 220
33 TraesCS7A01G559400 chr2D 87.437 199 16 7 130 326 19748345 19748536 1.890000e-53 220
34 TraesCS7A01G559400 chr5D 87.730 163 14 5 164 326 473056328 473056172 6.890000e-43 185
35 TraesCS7A01G559400 chr5D 87.500 160 12 4 359 518 473056172 473056021 1.150000e-40 178
36 TraesCS7A01G559400 chr4D 86.875 160 13 4 359 518 446595980 446595829 5.360000e-39 172
37 TraesCS7A01G559400 chr3B 84.302 172 20 4 440 611 749280478 749280314 1.160000e-35 161
38 TraesCS7A01G559400 chr3D 95.652 92 4 0 610 701 436676894 436676985 9.030000e-32 148
39 TraesCS7A01G559400 chr3D 96.512 86 3 0 615 700 22679059 22679144 4.200000e-30 143
40 TraesCS7A01G559400 chr3D 94.624 93 3 2 615 706 22767899 22767808 4.200000e-30 143
41 TraesCS7A01G559400 chr4A 93.814 97 4 2 608 703 586426842 586426937 1.170000e-30 145
42 TraesCS7A01G559400 chr6A 94.565 92 5 0 615 706 158080394 158080485 4.200000e-30 143


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G559400 chr7A 731270181 731274214 4033 True 7450.000000 7450 100.000000 1 4034 1 chr7A.!!$R1 4033
1 TraesCS7A01G559400 chr7D 634686295 634692094 5799 False 883.600000 2571 90.203000 17 4034 5 chr7D.!!$F1 4017
2 TraesCS7A01G559400 chr7B 741569473 741574024 4551 False 700.333333 2444 91.618833 130 4033 6 chr7B.!!$F1 3903
3 TraesCS7A01G559400 chr5B 617304692 617305280 588 True 306.000000 355 85.508500 359 1062 2 chr5B.!!$R1 703
4 TraesCS7A01G559400 chr2A 472414981 472415528 547 False 290.500000 346 86.302500 406 1063 2 chr2A.!!$F1 657

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
477 762 0.110056 CCGTGACAGCATCTGTTTGC 60.110 55.0 0.66 0.0 45.44 3.68 F
1356 1648 0.462759 CCGCCTTCAGGAACATCCTC 60.463 60.0 0.00 0.0 45.66 3.71 F
2381 2678 0.319383 CGAGTATGCTAGGCTGCAGG 60.319 60.0 17.12 0.0 46.71 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2380 2677 0.179179 GCGCAGAAATTCACAGCTCC 60.179 55.0 0.30 0.0 0.00 4.70 R
2394 2691 0.240678 TGCAGTTGGTAAATGCGCAG 59.759 50.0 18.32 0.0 42.92 5.18 R
3882 6292 0.177836 ACCCCAAGCTTTTTGCACAC 59.822 50.0 0.00 0.0 45.94 3.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.366359 AGGATTACTAATTTTGGCATGAGTTT 57.634 30.769 0.00 0.00 0.00 2.66
26 27 8.470002 AGGATTACTAATTTTGGCATGAGTTTC 58.530 33.333 0.00 0.00 0.00 2.78
54 55 5.184711 GGATCTAGATCCGTCCGTATAAGT 58.815 45.833 31.23 0.00 46.84 2.24
58 59 6.294473 TCTAGATCCGTCCGTATAAGTTCTT 58.706 40.000 0.00 0.00 0.00 2.52
64 65 3.303495 CGTCCGTATAAGTTCTTGCAGTG 59.697 47.826 0.00 0.00 0.00 3.66
74 75 8.783833 ATAAGTTCTTGCAGTGCCATATATAG 57.216 34.615 13.72 0.00 0.00 1.31
75 76 6.179906 AGTTCTTGCAGTGCCATATATAGT 57.820 37.500 13.72 0.00 0.00 2.12
76 77 7.303182 AGTTCTTGCAGTGCCATATATAGTA 57.697 36.000 13.72 0.00 0.00 1.82
77 78 7.382110 AGTTCTTGCAGTGCCATATATAGTAG 58.618 38.462 13.72 0.00 0.00 2.57
78 79 6.286240 TCTTGCAGTGCCATATATAGTAGG 57.714 41.667 13.72 0.00 0.00 3.18
79 80 6.016555 TCTTGCAGTGCCATATATAGTAGGA 58.983 40.000 13.72 0.00 0.00 2.94
80 81 5.921962 TGCAGTGCCATATATAGTAGGAG 57.078 43.478 13.72 0.00 0.00 3.69
81 82 5.333581 TGCAGTGCCATATATAGTAGGAGT 58.666 41.667 13.72 0.00 0.00 3.85
82 83 6.490492 TGCAGTGCCATATATAGTAGGAGTA 58.510 40.000 13.72 0.00 0.00 2.59
83 84 6.377429 TGCAGTGCCATATATAGTAGGAGTAC 59.623 42.308 13.72 0.00 0.00 2.73
84 85 6.458478 GCAGTGCCATATATAGTAGGAGTACG 60.458 46.154 2.85 0.00 33.97 3.67
85 86 6.598457 CAGTGCCATATATAGTAGGAGTACGT 59.402 42.308 0.00 0.00 33.97 3.57
99 100 1.535462 AGTACGTTTCTTGCATGTGCC 59.465 47.619 0.00 0.00 41.18 5.01
157 428 2.871022 CTCTGCCTGTGAATGATAGTGC 59.129 50.000 0.00 0.00 0.00 4.40
162 433 3.201290 CCTGTGAATGATAGTGCCTGTC 58.799 50.000 0.00 0.00 0.00 3.51
170 441 1.834263 GATAGTGCCTGTCACCCTCTT 59.166 52.381 0.00 0.00 46.81 2.85
171 442 2.615986 TAGTGCCTGTCACCCTCTTA 57.384 50.000 0.00 0.00 46.81 2.10
185 459 4.396166 CACCCTCTTAACATGTTGATCCAC 59.604 45.833 21.42 0.00 0.00 4.02
207 481 3.763097 TTGTGCAAAGAATATGCTCCG 57.237 42.857 0.00 0.00 44.14 4.63
255 532 4.024893 CACCTAACATCATGTGGCGATTAC 60.025 45.833 0.00 0.00 0.00 1.89
266 543 6.649141 TCATGTGGCGATTACAAATAGGATAC 59.351 38.462 0.00 0.00 0.00 2.24
267 544 5.919755 TGTGGCGATTACAAATAGGATACA 58.080 37.500 0.00 0.00 41.41 2.29
277 554 6.191657 ACAAATAGGATACAGATGGATGCA 57.808 37.500 0.00 0.00 41.41 3.96
302 579 2.358939 GCAACCAAGCCATGAGAAAG 57.641 50.000 0.00 0.00 0.00 2.62
303 580 1.067354 GCAACCAAGCCATGAGAAAGG 60.067 52.381 0.00 0.00 0.00 3.11
328 605 6.447162 GGCTACTCTGCTTTTGTTATGTTTT 58.553 36.000 0.00 0.00 0.00 2.43
335 612 6.036953 TCTGCTTTTGTTATGTTTTGCCTTTG 59.963 34.615 0.00 0.00 0.00 2.77
357 637 4.758165 TGCTGTTTACAGTTTAACCCTAGC 59.242 41.667 11.23 0.00 45.45 3.42
410 695 2.219458 CCATCATGGCTCAGCTAACAG 58.781 52.381 0.00 0.00 0.00 3.16
432 717 5.292834 CAGTACTGATGTGATCATGTCCAAC 59.707 44.000 18.45 0.00 38.85 3.77
477 762 0.110056 CCGTGACAGCATCTGTTTGC 60.110 55.000 0.66 0.00 45.44 3.68
479 764 1.198408 CGTGACAGCATCTGTTTGCAT 59.802 47.619 0.66 0.00 45.44 3.96
480 765 2.416202 CGTGACAGCATCTGTTTGCATA 59.584 45.455 0.66 0.00 45.44 3.14
481 766 3.120234 CGTGACAGCATCTGTTTGCATAA 60.120 43.478 0.66 0.00 45.44 1.90
520 805 2.548280 CCATGTTGCTGCACCATTTTCA 60.548 45.455 10.14 0.00 0.00 2.69
612 898 5.865085 TGATACAGCCCTTGGTCAATATAC 58.135 41.667 0.00 0.00 0.00 1.47
613 899 5.368230 TGATACAGCCCTTGGTCAATATACA 59.632 40.000 0.00 0.00 0.00 2.29
614 900 4.156455 ACAGCCCTTGGTCAATATACAG 57.844 45.455 0.00 0.00 0.00 2.74
615 901 3.523564 ACAGCCCTTGGTCAATATACAGT 59.476 43.478 0.00 0.00 0.00 3.55
616 902 4.719773 ACAGCCCTTGGTCAATATACAGTA 59.280 41.667 0.00 0.00 0.00 2.74
617 903 5.057149 CAGCCCTTGGTCAATATACAGTAC 58.943 45.833 0.00 0.00 0.00 2.73
618 904 4.969359 AGCCCTTGGTCAATATACAGTACT 59.031 41.667 0.00 0.00 0.00 2.73
619 905 5.070580 AGCCCTTGGTCAATATACAGTACTC 59.929 44.000 0.00 0.00 0.00 2.59
620 906 5.742255 GCCCTTGGTCAATATACAGTACTCC 60.742 48.000 0.00 0.00 0.00 3.85
621 907 5.221661 CCCTTGGTCAATATACAGTACTCCC 60.222 48.000 0.00 0.00 0.00 4.30
622 908 5.602978 CCTTGGTCAATATACAGTACTCCCT 59.397 44.000 0.00 0.00 0.00 4.20
623 909 6.239345 CCTTGGTCAATATACAGTACTCCCTC 60.239 46.154 0.00 0.00 0.00 4.30
624 910 5.145564 TGGTCAATATACAGTACTCCCTCC 58.854 45.833 0.00 0.00 0.00 4.30
625 911 4.217983 GGTCAATATACAGTACTCCCTCCG 59.782 50.000 0.00 0.00 0.00 4.63
626 912 4.826183 GTCAATATACAGTACTCCCTCCGT 59.174 45.833 0.00 0.00 0.00 4.69
627 913 6.000219 GTCAATATACAGTACTCCCTCCGTA 59.000 44.000 0.00 0.00 0.00 4.02
628 914 6.488006 GTCAATATACAGTACTCCCTCCGTAA 59.512 42.308 0.00 0.00 0.00 3.18
629 915 7.013655 GTCAATATACAGTACTCCCTCCGTAAA 59.986 40.741 0.00 0.00 0.00 2.01
630 916 6.890979 ATATACAGTACTCCCTCCGTAAAC 57.109 41.667 0.00 0.00 0.00 2.01
631 917 2.880443 ACAGTACTCCCTCCGTAAACA 58.120 47.619 0.00 0.00 0.00 2.83
632 918 3.233507 ACAGTACTCCCTCCGTAAACAA 58.766 45.455 0.00 0.00 0.00 2.83
633 919 3.642848 ACAGTACTCCCTCCGTAAACAAA 59.357 43.478 0.00 0.00 0.00 2.83
634 920 4.285260 ACAGTACTCCCTCCGTAAACAAAT 59.715 41.667 0.00 0.00 0.00 2.32
635 921 5.481473 ACAGTACTCCCTCCGTAAACAAATA 59.519 40.000 0.00 0.00 0.00 1.40
636 922 6.155737 ACAGTACTCCCTCCGTAAACAAATAT 59.844 38.462 0.00 0.00 0.00 1.28
637 923 7.342799 ACAGTACTCCCTCCGTAAACAAATATA 59.657 37.037 0.00 0.00 0.00 0.86
638 924 8.199449 CAGTACTCCCTCCGTAAACAAATATAA 58.801 37.037 0.00 0.00 0.00 0.98
639 925 8.419442 AGTACTCCCTCCGTAAACAAATATAAG 58.581 37.037 0.00 0.00 0.00 1.73
640 926 7.427989 ACTCCCTCCGTAAACAAATATAAGA 57.572 36.000 0.00 0.00 0.00 2.10
641 927 7.498443 ACTCCCTCCGTAAACAAATATAAGAG 58.502 38.462 0.00 0.00 0.00 2.85
642 928 7.125356 ACTCCCTCCGTAAACAAATATAAGAGT 59.875 37.037 0.00 0.00 0.00 3.24
643 929 7.270047 TCCCTCCGTAAACAAATATAAGAGTG 58.730 38.462 0.00 0.00 0.00 3.51
644 930 7.046033 CCCTCCGTAAACAAATATAAGAGTGT 58.954 38.462 0.00 0.00 0.00 3.55
645 931 7.551617 CCCTCCGTAAACAAATATAAGAGTGTT 59.448 37.037 0.00 0.00 35.77 3.32
646 932 8.943002 CCTCCGTAAACAAATATAAGAGTGTTT 58.057 33.333 5.98 5.98 44.23 2.83
694 980 9.566432 AAATGCTCTTATATTCCTTTACAGAGG 57.434 33.333 0.00 0.00 38.20 3.69
695 981 7.067496 TGCTCTTATATTCCTTTACAGAGGG 57.933 40.000 0.00 0.00 37.41 4.30
696 982 6.844388 TGCTCTTATATTCCTTTACAGAGGGA 59.156 38.462 0.00 0.00 37.41 4.20
697 983 7.015682 TGCTCTTATATTCCTTTACAGAGGGAG 59.984 40.741 0.00 0.00 37.41 4.30
698 984 7.015779 GCTCTTATATTCCTTTACAGAGGGAGT 59.984 40.741 0.00 0.00 37.41 3.85
699 985 9.589461 CTCTTATATTCCTTTACAGAGGGAGTA 57.411 37.037 0.00 0.00 37.41 2.59
702 988 9.670442 TTATATTCCTTTACAGAGGGAGTATGT 57.330 33.333 0.00 0.00 37.41 2.29
703 989 5.934402 TTCCTTTACAGAGGGAGTATGTC 57.066 43.478 0.00 0.00 37.41 3.06
706 992 6.023603 TCCTTTACAGAGGGAGTATGTCTTT 58.976 40.000 0.00 0.00 37.41 2.52
716 1002 1.063717 AGTATGTCTTTGGGGCCATGG 60.064 52.381 7.63 7.63 0.00 3.66
726 1012 1.757731 GGGCCATGGCAATGCTACA 60.758 57.895 36.56 0.00 44.11 2.74
803 1089 8.671384 TGCTTCACTTTTAAACTGTACTACAT 57.329 30.769 0.00 0.00 0.00 2.29
804 1090 8.556194 TGCTTCACTTTTAAACTGTACTACATG 58.444 33.333 0.00 0.00 0.00 3.21
805 1091 8.015658 GCTTCACTTTTAAACTGTACTACATGG 58.984 37.037 0.00 0.00 0.00 3.66
806 1092 8.967664 TTCACTTTTAAACTGTACTACATGGT 57.032 30.769 0.00 0.00 0.00 3.55
824 1111 6.888105 ACATGGTAAAAATGGAATTGGGATC 58.112 36.000 0.00 0.00 36.10 3.36
825 1112 5.948742 TGGTAAAAATGGAATTGGGATCC 57.051 39.130 1.92 1.92 36.10 3.36
837 1124 1.077429 GGGATCCTTGTGTCCTGGC 60.077 63.158 12.58 0.00 34.84 4.85
852 1139 4.901250 TGTCCTGGCAGTCATGAGAATATA 59.099 41.667 14.43 0.00 0.00 0.86
853 1140 5.221521 TGTCCTGGCAGTCATGAGAATATAC 60.222 44.000 14.43 0.00 0.00 1.47
854 1141 5.011533 GTCCTGGCAGTCATGAGAATATACT 59.988 44.000 14.43 0.00 0.00 2.12
855 1142 6.209589 GTCCTGGCAGTCATGAGAATATACTA 59.790 42.308 14.43 0.00 0.00 1.82
856 1143 6.435591 TCCTGGCAGTCATGAGAATATACTAG 59.564 42.308 14.43 0.00 0.00 2.57
880 1170 8.335532 AGTACTGCTGCTTTTGTTATTTATCA 57.664 30.769 0.00 0.00 0.00 2.15
886 1176 8.580720 TGCTGCTTTTGTTATTTATCACCTTTA 58.419 29.630 0.00 0.00 0.00 1.85
948 1239 6.592994 ACTGTTATATCATCAATCATGGCTCG 59.407 38.462 0.00 0.00 32.64 5.03
963 1254 2.205911 GGCTCGGCTAACATCTCTTTC 58.794 52.381 0.00 0.00 0.00 2.62
964 1255 2.159028 GGCTCGGCTAACATCTCTTTCT 60.159 50.000 0.00 0.00 0.00 2.52
965 1256 3.068307 GGCTCGGCTAACATCTCTTTCTA 59.932 47.826 0.00 0.00 0.00 2.10
966 1257 4.045783 GCTCGGCTAACATCTCTTTCTAC 58.954 47.826 0.00 0.00 0.00 2.59
1164 1456 2.668632 TGGTCCGCCATGAAGTCC 59.331 61.111 0.00 0.00 40.46 3.85
1311 1603 1.491563 CAACGTGGACTACAAGCGC 59.508 57.895 0.00 0.00 31.20 5.92
1356 1648 0.462759 CCGCCTTCAGGAACATCCTC 60.463 60.000 0.00 0.00 45.66 3.71
1366 1658 1.334239 GGAACATCCTCGAGATCGACG 60.334 57.143 15.71 8.59 44.22 5.12
1628 1920 1.935199 CGAGTACTCCGACCTCTTCTC 59.065 57.143 17.23 0.00 0.00 2.87
1668 1960 2.081725 GAACTCTCGGGTTCCTTGTC 57.918 55.000 0.00 0.00 39.50 3.18
1818 2110 2.572284 GTCCCCGACTTCGTGGAG 59.428 66.667 2.83 0.00 45.99 3.86
1967 2259 3.184683 GCAGACGGCGCTGAAGAG 61.185 66.667 25.98 10.64 38.14 2.85
2263 2555 4.767409 AGGTAAAAATGTTCCTCTTCTGCC 59.233 41.667 0.00 0.00 0.00 4.85
2311 2608 7.066284 TGCATCAAGTCTTTTAGCTAGGAATTC 59.934 37.037 0.00 0.00 0.00 2.17
2312 2609 7.066284 GCATCAAGTCTTTTAGCTAGGAATTCA 59.934 37.037 7.93 0.00 0.00 2.57
2313 2610 9.118300 CATCAAGTCTTTTAGCTAGGAATTCAT 57.882 33.333 7.93 2.14 0.00 2.57
2314 2611 8.723942 TCAAGTCTTTTAGCTAGGAATTCATC 57.276 34.615 7.93 0.00 0.00 2.92
2315 2612 8.543774 TCAAGTCTTTTAGCTAGGAATTCATCT 58.456 33.333 7.93 0.00 0.00 2.90
2317 2614 8.956533 AGTCTTTTAGCTAGGAATTCATCTTC 57.043 34.615 7.93 0.00 0.00 2.87
2318 2615 7.990314 AGTCTTTTAGCTAGGAATTCATCTTCC 59.010 37.037 7.93 0.00 44.29 3.46
2319 2616 7.227711 GTCTTTTAGCTAGGAATTCATCTTCCC 59.772 40.741 7.93 0.00 44.93 3.97
2322 2619 5.723860 AGCTAGGAATTCATCTTCCCTTT 57.276 39.130 7.93 0.00 44.93 3.11
2323 2620 6.084749 AGCTAGGAATTCATCTTCCCTTTT 57.915 37.500 7.93 0.00 44.93 2.27
2359 2656 7.199541 AGCATTCATTTCAGTAGATATGTGC 57.800 36.000 0.00 0.00 36.43 4.57
2360 2657 6.769341 AGCATTCATTTCAGTAGATATGTGCA 59.231 34.615 11.18 0.00 37.51 4.57
2361 2658 7.447545 AGCATTCATTTCAGTAGATATGTGCAT 59.552 33.333 0.00 0.00 37.51 3.96
2362 2659 7.749570 GCATTCATTTCAGTAGATATGTGCATC 59.250 37.037 0.00 0.00 36.32 3.91
2363 2660 7.412137 TTCATTTCAGTAGATATGTGCATCG 57.588 36.000 0.00 0.00 35.50 3.84
2364 2661 6.748132 TCATTTCAGTAGATATGTGCATCGA 58.252 36.000 0.00 0.00 35.50 3.59
2365 2662 6.865205 TCATTTCAGTAGATATGTGCATCGAG 59.135 38.462 0.00 0.00 35.50 4.04
2366 2663 5.774498 TTCAGTAGATATGTGCATCGAGT 57.226 39.130 0.00 0.00 0.00 4.18
2367 2664 6.877611 TTCAGTAGATATGTGCATCGAGTA 57.122 37.500 0.00 0.00 0.00 2.59
2368 2665 7.454260 TTCAGTAGATATGTGCATCGAGTAT 57.546 36.000 0.00 0.00 0.00 2.12
2369 2666 6.846350 TCAGTAGATATGTGCATCGAGTATG 58.154 40.000 0.00 0.00 38.74 2.39
2378 2675 1.707632 CATCGAGTATGCTAGGCTGC 58.292 55.000 0.00 0.00 0.00 5.25
2380 2677 0.670706 TCGAGTATGCTAGGCTGCAG 59.329 55.000 10.11 10.11 46.71 4.41
2381 2678 0.319383 CGAGTATGCTAGGCTGCAGG 60.319 60.000 17.12 0.00 46.71 4.85
2382 2679 1.043816 GAGTATGCTAGGCTGCAGGA 58.956 55.000 17.12 0.00 46.71 3.86
2383 2680 1.000731 GAGTATGCTAGGCTGCAGGAG 59.999 57.143 17.12 0.00 46.71 3.69
2384 2681 0.602372 GTATGCTAGGCTGCAGGAGC 60.602 60.000 17.12 5.09 46.71 4.70
2391 2688 4.315588 GCTGCAGGAGCTGTGAAT 57.684 55.556 17.12 0.00 45.21 2.57
2392 2689 2.564471 GCTGCAGGAGCTGTGAATT 58.436 52.632 17.12 0.00 45.21 2.17
2393 2690 0.886563 GCTGCAGGAGCTGTGAATTT 59.113 50.000 17.12 0.00 45.21 1.82
2394 2691 1.135460 GCTGCAGGAGCTGTGAATTTC 60.135 52.381 17.12 0.00 45.21 2.17
2395 2692 2.434428 CTGCAGGAGCTGTGAATTTCT 58.566 47.619 5.57 0.00 42.74 2.52
2396 2693 2.156917 TGCAGGAGCTGTGAATTTCTG 58.843 47.619 0.00 0.00 42.74 3.02
2397 2694 1.135460 GCAGGAGCTGTGAATTTCTGC 60.135 52.381 0.00 0.00 39.13 4.26
2398 2695 1.129998 CAGGAGCTGTGAATTTCTGCG 59.870 52.381 0.00 0.00 35.48 5.18
2399 2696 0.179179 GGAGCTGTGAATTTCTGCGC 60.179 55.000 0.00 0.00 35.48 6.09
2400 2697 0.518636 GAGCTGTGAATTTCTGCGCA 59.481 50.000 10.98 10.98 35.48 6.09
2401 2698 1.131883 GAGCTGTGAATTTCTGCGCAT 59.868 47.619 12.24 0.00 35.48 4.73
2402 2699 1.542915 AGCTGTGAATTTCTGCGCATT 59.457 42.857 12.24 0.74 35.48 3.56
2403 2700 2.029649 AGCTGTGAATTTCTGCGCATTT 60.030 40.909 12.24 2.21 35.48 2.32
2404 2701 3.191162 AGCTGTGAATTTCTGCGCATTTA 59.809 39.130 12.24 0.00 35.48 1.40
2405 2702 3.301642 GCTGTGAATTTCTGCGCATTTAC 59.698 43.478 12.24 10.07 0.00 2.01
2406 2703 3.832276 TGTGAATTTCTGCGCATTTACC 58.168 40.909 12.24 0.00 0.00 2.85
2407 2704 3.254411 TGTGAATTTCTGCGCATTTACCA 59.746 39.130 12.24 2.20 0.00 3.25
2408 2705 4.233789 GTGAATTTCTGCGCATTTACCAA 58.766 39.130 12.24 0.00 0.00 3.67
2409 2706 4.089923 GTGAATTTCTGCGCATTTACCAAC 59.910 41.667 12.24 1.45 0.00 3.77
2410 2707 4.022416 TGAATTTCTGCGCATTTACCAACT 60.022 37.500 12.24 0.00 0.00 3.16
2411 2708 2.987413 TTCTGCGCATTTACCAACTG 57.013 45.000 12.24 0.00 0.00 3.16
2412 2709 0.521291 TCTGCGCATTTACCAACTGC 59.479 50.000 12.24 0.00 0.00 4.40
2413 2710 0.240678 CTGCGCATTTACCAACTGCA 59.759 50.000 12.24 0.00 35.64 4.41
2414 2711 0.887247 TGCGCATTTACCAACTGCAT 59.113 45.000 5.66 0.00 35.64 3.96
2415 2712 1.271934 TGCGCATTTACCAACTGCATT 59.728 42.857 5.66 0.00 35.64 3.56
2416 2713 1.655099 GCGCATTTACCAACTGCATTG 59.345 47.619 0.30 0.00 35.64 2.82
2417 2714 2.926159 GCGCATTTACCAACTGCATTGT 60.926 45.455 0.30 0.00 36.47 2.71
2418 2715 2.916716 CGCATTTACCAACTGCATTGTC 59.083 45.455 0.00 0.00 36.47 3.18
2419 2716 3.611293 CGCATTTACCAACTGCATTGTCA 60.611 43.478 0.00 0.00 36.47 3.58
2420 2717 4.497300 GCATTTACCAACTGCATTGTCAT 58.503 39.130 0.00 0.00 36.47 3.06
2421 2718 4.931002 GCATTTACCAACTGCATTGTCATT 59.069 37.500 0.00 0.00 36.47 2.57
2422 2719 5.163933 GCATTTACCAACTGCATTGTCATTG 60.164 40.000 0.00 0.00 36.47 2.82
2423 2720 5.528043 TTTACCAACTGCATTGTCATTGT 57.472 34.783 0.00 0.00 36.47 2.71
2424 2721 3.374220 ACCAACTGCATTGTCATTGTG 57.626 42.857 0.00 0.00 36.47 3.33
2425 2722 2.694628 ACCAACTGCATTGTCATTGTGT 59.305 40.909 0.00 0.00 36.47 3.72
2426 2723 3.888323 ACCAACTGCATTGTCATTGTGTA 59.112 39.130 0.00 0.00 36.47 2.90
2427 2724 4.022935 ACCAACTGCATTGTCATTGTGTAG 60.023 41.667 0.00 0.00 36.47 2.74
2437 2734 4.919206 TGTCATTGTGTAGTTGTTGCTTG 58.081 39.130 0.00 0.00 0.00 4.01
2444 2741 3.499918 GTGTAGTTGTTGCTTGCTCTGAT 59.500 43.478 0.00 0.00 0.00 2.90
2447 2744 2.954318 AGTTGTTGCTTGCTCTGATTGT 59.046 40.909 0.00 0.00 0.00 2.71
2451 2748 3.570975 TGTTGCTTGCTCTGATTGTTCAT 59.429 39.130 0.00 0.00 0.00 2.57
2452 2749 4.164294 GTTGCTTGCTCTGATTGTTCATC 58.836 43.478 0.00 0.00 0.00 2.92
2453 2750 2.751259 TGCTTGCTCTGATTGTTCATCC 59.249 45.455 0.00 0.00 0.00 3.51
2455 2752 3.181499 GCTTGCTCTGATTGTTCATCCAG 60.181 47.826 0.00 0.00 0.00 3.86
2456 2753 2.362736 TGCTCTGATTGTTCATCCAGC 58.637 47.619 0.00 0.00 37.34 4.85
2458 2755 2.355132 GCTCTGATTGTTCATCCAGCAG 59.645 50.000 0.00 0.00 37.02 4.24
2462 2773 4.019411 TCTGATTGTTCATCCAGCAGGTAA 60.019 41.667 0.00 0.00 35.89 2.85
2483 2794 7.707104 GGTAACTAATATTGCTGCTTGAATGT 58.293 34.615 0.00 0.00 0.00 2.71
2484 2795 7.857885 GGTAACTAATATTGCTGCTTGAATGTC 59.142 37.037 0.00 0.00 0.00 3.06
2485 2796 6.052840 ACTAATATTGCTGCTTGAATGTCG 57.947 37.500 0.00 0.00 0.00 4.35
2486 2797 5.817296 ACTAATATTGCTGCTTGAATGTCGA 59.183 36.000 0.00 0.00 0.00 4.20
2487 2798 5.762825 AATATTGCTGCTTGAATGTCGAT 57.237 34.783 0.00 0.00 0.00 3.59
2489 2800 4.542662 ATTGCTGCTTGAATGTCGATAC 57.457 40.909 0.00 0.00 0.00 2.24
2490 2801 2.971307 TGCTGCTTGAATGTCGATACA 58.029 42.857 0.00 0.00 40.69 2.29
2491 2802 3.333804 TGCTGCTTGAATGTCGATACAA 58.666 40.909 0.00 0.00 39.58 2.41
2492 2803 3.750652 TGCTGCTTGAATGTCGATACAAA 59.249 39.130 0.00 0.00 39.58 2.83
2493 2804 4.142838 TGCTGCTTGAATGTCGATACAAAG 60.143 41.667 0.00 0.00 39.58 2.77
2494 2805 4.142816 GCTGCTTGAATGTCGATACAAAGT 60.143 41.667 0.00 0.00 39.58 2.66
2495 2806 5.063438 GCTGCTTGAATGTCGATACAAAGTA 59.937 40.000 0.00 0.00 39.58 2.24
2526 2857 7.744087 TGCTGCTAAAAATTAGTCTGAAAGA 57.256 32.000 0.00 0.00 43.69 2.52
2548 2879 7.851387 AGAAAGAAAGAAAGAAGAACGTTCT 57.149 32.000 24.93 24.93 46.03 3.01
2549 2880 7.689299 AGAAAGAAAGAAAGAAGAACGTTCTG 58.311 34.615 30.33 0.00 44.05 3.02
2550 2881 6.986904 AAGAAAGAAAGAAGAACGTTCTGT 57.013 33.333 30.33 19.70 44.05 3.41
2554 2885 5.485662 AGAAAGAAGAACGTTCTGTTTGG 57.514 39.130 29.70 0.00 43.42 3.28
2557 2888 3.606687 AGAAGAACGTTCTGTTTGGTGT 58.393 40.909 30.33 12.87 42.09 4.16
2562 2893 4.398044 AGAACGTTCTGTTTGGTGTTCATT 59.602 37.500 29.24 0.00 42.09 2.57
2569 2900 5.375773 TCTGTTTGGTGTTCATTCTCATGA 58.624 37.500 0.00 0.00 37.67 3.07
2571 2902 7.167535 TCTGTTTGGTGTTCATTCTCATGATA 58.832 34.615 0.00 0.00 39.28 2.15
2582 2913 9.823098 GTTCATTCTCATGATAATGCTTATGAC 57.177 33.333 22.61 12.85 39.28 3.06
2583 2914 9.563748 TTCATTCTCATGATAATGCTTATGACA 57.436 29.630 22.61 6.31 39.28 3.58
2584 2915 9.734984 TCATTCTCATGATAATGCTTATGACAT 57.265 29.630 22.61 0.00 34.22 3.06
3045 3391 2.202756 GCCTAGGCCGTCAGTTCG 60.203 66.667 24.19 0.00 34.56 3.95
3046 3392 3.003113 GCCTAGGCCGTCAGTTCGT 62.003 63.158 24.19 0.00 34.56 3.85
3061 3463 2.363788 TTCGTTCGGAACTCTGGATG 57.636 50.000 17.94 1.83 0.00 3.51
3066 3468 4.158949 TCGTTCGGAACTCTGGATGAATTA 59.841 41.667 17.94 0.00 0.00 1.40
3067 3469 4.868171 CGTTCGGAACTCTGGATGAATTAA 59.132 41.667 17.94 0.00 0.00 1.40
3071 3473 5.753438 TCGGAACTCTGGATGAATTAATTCG 59.247 40.000 20.45 8.31 39.62 3.34
3081 3483 6.873076 TGGATGAATTAATTCGCTTTTGCTTT 59.127 30.769 20.45 0.00 44.80 3.51
3083 3485 5.914746 TGAATTAATTCGCTTTTGCTTTGC 58.085 33.333 20.45 0.00 44.80 3.68
3085 3487 6.202570 TGAATTAATTCGCTTTTGCTTTGCTT 59.797 30.769 20.45 0.00 44.80 3.91
3086 3488 3.865224 AATTCGCTTTTGCTTTGCTTG 57.135 38.095 0.00 0.00 44.80 4.01
3087 3489 1.569708 TTCGCTTTTGCTTTGCTTGG 58.430 45.000 0.00 0.00 44.80 3.61
3089 3491 1.134848 TCGCTTTTGCTTTGCTTGGTT 60.135 42.857 0.00 0.00 44.80 3.67
3090 3492 2.099921 TCGCTTTTGCTTTGCTTGGTTA 59.900 40.909 0.00 0.00 44.80 2.85
3091 3493 3.059166 CGCTTTTGCTTTGCTTGGTTAT 58.941 40.909 0.00 0.00 44.80 1.89
3092 3494 3.120923 CGCTTTTGCTTTGCTTGGTTATG 60.121 43.478 0.00 0.00 44.80 1.90
3121 3524 8.888579 ATTAATAAGTAGAACTTGATGGACGG 57.111 34.615 2.59 0.00 39.11 4.79
3122 3525 3.611766 AAGTAGAACTTGATGGACGGG 57.388 47.619 0.00 0.00 37.00 5.28
3136 3539 3.475774 CGGGTCGTGTAGCGTTGC 61.476 66.667 0.00 0.00 42.13 4.17
3137 3540 2.356553 GGGTCGTGTAGCGTTGCA 60.357 61.111 0.00 0.00 42.13 4.08
3138 3541 1.957186 GGGTCGTGTAGCGTTGCAA 60.957 57.895 0.00 0.00 42.13 4.08
3140 3543 1.219522 GGTCGTGTAGCGTTGCAACT 61.220 55.000 26.09 12.00 42.13 3.16
3142 3545 1.004292 GTCGTGTAGCGTTGCAACTTT 60.004 47.619 26.09 16.29 42.13 2.66
3144 3547 1.753956 GTGTAGCGTTGCAACTTTGG 58.246 50.000 26.09 12.40 0.00 3.28
3145 3548 1.064952 GTGTAGCGTTGCAACTTTGGT 59.935 47.619 26.09 18.19 0.00 3.67
3147 3550 1.332375 GTAGCGTTGCAACTTTGGTGA 59.668 47.619 26.09 2.94 0.00 4.02
3148 3551 0.381801 AGCGTTGCAACTTTGGTGAG 59.618 50.000 26.09 9.92 0.00 3.51
3149 3552 0.594796 GCGTTGCAACTTTGGTGAGG 60.595 55.000 26.09 9.22 0.00 3.86
3150 3553 0.738389 CGTTGCAACTTTGGTGAGGT 59.262 50.000 26.09 0.00 0.00 3.85
3151 3554 1.134175 CGTTGCAACTTTGGTGAGGTT 59.866 47.619 26.09 0.00 0.00 3.50
3152 3555 2.794631 CGTTGCAACTTTGGTGAGGTTC 60.795 50.000 26.09 0.00 0.00 3.62
3154 3557 1.021968 GCAACTTTGGTGAGGTTCGT 58.978 50.000 0.00 0.00 0.00 3.85
3155 3558 1.268539 GCAACTTTGGTGAGGTTCGTG 60.269 52.381 0.00 0.00 0.00 4.35
3156 3559 2.285083 CAACTTTGGTGAGGTTCGTGA 58.715 47.619 0.00 0.00 0.00 4.35
3157 3560 1.949465 ACTTTGGTGAGGTTCGTGAC 58.051 50.000 0.00 0.00 0.00 3.67
3161 4524 0.828022 TGGTGAGGTTCGTGACACTT 59.172 50.000 3.68 0.00 34.28 3.16
3179 4542 3.561310 CACTTTGTGTGTAGCAGTGTCAT 59.439 43.478 0.00 0.00 41.53 3.06
3182 4545 3.192541 TGTGTGTAGCAGTGTCATTGT 57.807 42.857 0.00 0.00 0.00 2.71
3183 4546 3.540617 TGTGTGTAGCAGTGTCATTGTT 58.459 40.909 0.00 0.00 0.00 2.83
3184 4547 3.312146 TGTGTGTAGCAGTGTCATTGTTG 59.688 43.478 0.00 0.00 0.00 3.33
3185 4548 2.877786 TGTGTAGCAGTGTCATTGTTGG 59.122 45.455 0.00 0.00 0.00 3.77
3186 4549 3.138304 GTGTAGCAGTGTCATTGTTGGA 58.862 45.455 0.00 0.00 0.00 3.53
3187 4550 3.753272 GTGTAGCAGTGTCATTGTTGGAT 59.247 43.478 0.00 0.00 0.00 3.41
3190 4553 4.247267 AGCAGTGTCATTGTTGGATTTG 57.753 40.909 0.00 0.00 0.00 2.32
3191 4554 2.733026 GCAGTGTCATTGTTGGATTTGC 59.267 45.455 0.00 0.00 0.00 3.68
3192 4555 3.319755 CAGTGTCATTGTTGGATTTGCC 58.680 45.455 0.00 0.00 37.10 4.52
3193 4556 2.299867 AGTGTCATTGTTGGATTTGCCC 59.700 45.455 0.00 0.00 34.97 5.36
3194 4557 1.622811 TGTCATTGTTGGATTTGCCCC 59.377 47.619 0.00 0.00 34.97 5.80
3195 4558 0.894141 TCATTGTTGGATTTGCCCCG 59.106 50.000 0.00 0.00 34.97 5.73
3197 4560 1.001860 CATTGTTGGATTTGCCCCGTT 59.998 47.619 0.00 0.00 34.97 4.44
3198 4561 1.123928 TTGTTGGATTTGCCCCGTTT 58.876 45.000 0.00 0.00 34.97 3.60
3200 4563 1.486726 TGTTGGATTTGCCCCGTTTTT 59.513 42.857 0.00 0.00 34.97 1.94
3201 4564 2.698797 TGTTGGATTTGCCCCGTTTTTA 59.301 40.909 0.00 0.00 34.97 1.52
3202 4565 3.134081 TGTTGGATTTGCCCCGTTTTTAA 59.866 39.130 0.00 0.00 34.97 1.52
3204 4567 4.195225 TGGATTTGCCCCGTTTTTAATC 57.805 40.909 0.00 0.00 34.97 1.75
3205 4568 3.835395 TGGATTTGCCCCGTTTTTAATCT 59.165 39.130 0.00 0.00 34.97 2.40
3206 4569 4.180817 GGATTTGCCCCGTTTTTAATCTG 58.819 43.478 0.00 0.00 0.00 2.90
3209 4572 1.889829 TGCCCCGTTTTTAATCTGTGG 59.110 47.619 0.00 0.00 0.00 4.17
3210 4573 2.164338 GCCCCGTTTTTAATCTGTGGA 58.836 47.619 0.00 0.00 0.00 4.02
3211 4574 2.559231 GCCCCGTTTTTAATCTGTGGAA 59.441 45.455 0.00 0.00 0.00 3.53
3212 4575 3.194755 GCCCCGTTTTTAATCTGTGGAAT 59.805 43.478 0.00 0.00 0.00 3.01
3214 4577 5.167845 CCCCGTTTTTAATCTGTGGAATTG 58.832 41.667 0.00 0.00 0.00 2.32
3215 4578 5.167845 CCCGTTTTTAATCTGTGGAATTGG 58.832 41.667 0.00 0.00 0.00 3.16
3216 4579 5.279256 CCCGTTTTTAATCTGTGGAATTGGT 60.279 40.000 0.00 0.00 0.00 3.67
3217 4580 6.220201 CCGTTTTTAATCTGTGGAATTGGTT 58.780 36.000 0.00 0.00 0.00 3.67
3218 4581 6.145371 CCGTTTTTAATCTGTGGAATTGGTTG 59.855 38.462 0.00 0.00 0.00 3.77
3219 4582 6.699642 CGTTTTTAATCTGTGGAATTGGTTGT 59.300 34.615 0.00 0.00 0.00 3.32
3220 4583 7.223777 CGTTTTTAATCTGTGGAATTGGTTGTT 59.776 33.333 0.00 0.00 0.00 2.83
3222 4585 9.757227 TTTTTAATCTGTGGAATTGGTTGTTAG 57.243 29.630 0.00 0.00 0.00 2.34
3224 4587 8.698973 TTAATCTGTGGAATTGGTTGTTAGAA 57.301 30.769 0.00 0.00 0.00 2.10
3227 4900 6.126409 TCTGTGGAATTGGTTGTTAGAACTT 58.874 36.000 0.00 0.00 0.00 2.66
3234 4907 3.390135 TGGTTGTTAGAACTTGAGCTCG 58.610 45.455 9.64 0.00 0.00 5.03
3249 4922 1.819229 CTCGAGCTAGCACCCATGT 59.181 57.895 18.83 0.00 0.00 3.21
3250 4923 0.176680 CTCGAGCTAGCACCCATGTT 59.823 55.000 18.83 0.00 0.00 2.71
3254 4927 0.251297 AGCTAGCACCCATGTTGCAA 60.251 50.000 18.83 0.00 0.00 4.08
3255 4928 0.109132 GCTAGCACCCATGTTGCAAC 60.109 55.000 22.83 22.83 0.00 4.17
3256 4929 1.538047 CTAGCACCCATGTTGCAACT 58.462 50.000 28.61 12.75 0.00 3.16
3257 4930 1.200716 CTAGCACCCATGTTGCAACTG 59.799 52.381 28.61 22.08 0.00 3.16
3258 4931 0.756442 AGCACCCATGTTGCAACTGT 60.756 50.000 28.61 17.42 0.00 3.55
3260 4933 1.545582 GCACCCATGTTGCAACTGTAT 59.454 47.619 28.61 12.69 0.00 2.29
3261 4934 2.671914 GCACCCATGTTGCAACTGTATG 60.672 50.000 28.61 22.33 0.00 2.39
3262 4935 2.557924 CACCCATGTTGCAACTGTATGT 59.442 45.455 28.61 16.46 0.00 2.29
3264 4937 2.819019 CCCATGTTGCAACTGTATGTGA 59.181 45.455 28.61 7.76 0.00 3.58
3265 4938 3.444742 CCCATGTTGCAACTGTATGTGAT 59.555 43.478 28.61 9.79 0.00 3.06
3266 4939 4.439153 CCCATGTTGCAACTGTATGTGATC 60.439 45.833 28.61 0.00 0.00 2.92
3267 4940 4.397103 CCATGTTGCAACTGTATGTGATCT 59.603 41.667 28.61 0.00 0.00 2.75
3283 5586 4.874396 TGTGATCTTCTTCTGTCATGCATC 59.126 41.667 0.00 0.00 0.00 3.91
3289 5592 6.236409 TCTTCTTCTGTCATGCATCTTCTTT 58.764 36.000 0.00 0.00 0.00 2.52
3292 5595 4.290711 TCTGTCATGCATCTTCTTTCCA 57.709 40.909 0.00 0.00 0.00 3.53
3293 5596 4.005650 TCTGTCATGCATCTTCTTTCCAC 58.994 43.478 0.00 0.00 0.00 4.02
3294 5597 4.008330 CTGTCATGCATCTTCTTTCCACT 58.992 43.478 0.00 0.00 0.00 4.00
3295 5598 5.046376 TCTGTCATGCATCTTCTTTCCACTA 60.046 40.000 0.00 0.00 0.00 2.74
3296 5599 5.181009 TGTCATGCATCTTCTTTCCACTAG 58.819 41.667 0.00 0.00 0.00 2.57
3297 5600 5.181748 GTCATGCATCTTCTTTCCACTAGT 58.818 41.667 0.00 0.00 0.00 2.57
3298 5601 6.070824 TGTCATGCATCTTCTTTCCACTAGTA 60.071 38.462 0.00 0.00 0.00 1.82
3299 5602 6.256757 GTCATGCATCTTCTTTCCACTAGTAC 59.743 42.308 0.00 0.00 0.00 2.73
3300 5603 4.744570 TGCATCTTCTTTCCACTAGTACG 58.255 43.478 0.00 0.00 0.00 3.67
3302 5605 4.563184 GCATCTTCTTTCCACTAGTACGTG 59.437 45.833 0.00 0.00 34.71 4.49
3303 5606 4.170292 TCTTCTTTCCACTAGTACGTGC 57.830 45.455 0.00 0.00 33.60 5.34
3304 5607 3.825014 TCTTCTTTCCACTAGTACGTGCT 59.175 43.478 11.87 11.87 33.60 4.40
3305 5608 3.570926 TCTTTCCACTAGTACGTGCTG 57.429 47.619 17.04 8.78 33.60 4.41
3327 5663 2.832931 GTGATCTTCACACAGCGCT 58.167 52.632 2.64 2.64 46.22 5.92
3328 5664 0.718343 GTGATCTTCACACAGCGCTC 59.282 55.000 7.13 0.00 46.22 5.03
3329 5665 0.605083 TGATCTTCACACAGCGCTCT 59.395 50.000 7.13 0.00 0.00 4.09
3330 5666 0.997932 GATCTTCACACAGCGCTCTG 59.002 55.000 7.13 9.68 45.71 3.35
3331 5667 1.018226 ATCTTCACACAGCGCTCTGC 61.018 55.000 12.97 0.00 44.10 4.26
3344 5680 1.757306 CTCTGCCACTGTTCCCACT 59.243 57.895 0.00 0.00 0.00 4.00
3359 5695 1.457346 CCACTCTCAGGGAACAATGC 58.543 55.000 0.00 0.00 0.00 3.56
3360 5696 1.004044 CCACTCTCAGGGAACAATGCT 59.996 52.381 0.00 0.00 0.00 3.79
3373 5709 5.238214 GGGAACAATGCTCTGTGATCTTATC 59.762 44.000 0.00 0.00 0.00 1.75
3374 5710 5.819379 GGAACAATGCTCTGTGATCTTATCA 59.181 40.000 0.00 0.00 36.84 2.15
3375 5711 6.485984 GGAACAATGCTCTGTGATCTTATCAT 59.514 38.462 0.00 0.00 42.04 2.45
3376 5712 7.658982 GGAACAATGCTCTGTGATCTTATCATA 59.341 37.037 0.00 0.00 42.04 2.15
3377 5713 8.604640 AACAATGCTCTGTGATCTTATCATAG 57.395 34.615 7.19 7.19 46.21 2.23
3378 5714 7.733969 ACAATGCTCTGTGATCTTATCATAGT 58.266 34.615 11.78 0.00 45.39 2.12
3381 5717 7.536159 TGCTCTGTGATCTTATCATAGTCAT 57.464 36.000 11.78 0.00 45.39 3.06
3422 5783 0.323178 CCTTGTTGCTGGCCAGATCT 60.323 55.000 37.21 0.00 0.00 2.75
3428 5789 3.198872 GTTGCTGGCCAGATCTAGTTAC 58.801 50.000 37.21 15.32 0.00 2.50
3434 5795 5.565834 GCTGGCCAGATCTAGTTACAGTATC 60.566 48.000 37.21 8.14 0.00 2.24
3450 5811 8.422566 GTTACAGTATCCCATAAGCTAAGAGTT 58.577 37.037 0.00 0.00 0.00 3.01
3451 5812 9.650714 TTACAGTATCCCATAAGCTAAGAGTTA 57.349 33.333 0.00 0.00 0.00 2.24
3455 5816 7.785506 AGTATCCCATAAGCTAAGAGTTACAGT 59.214 37.037 0.00 0.00 0.00 3.55
3489 5850 0.104671 GTGTTGGGTTGCATTGCAGT 59.895 50.000 11.76 0.00 40.61 4.40
3490 5851 0.829333 TGTTGGGTTGCATTGCAGTT 59.171 45.000 11.76 0.00 40.61 3.16
3491 5852 1.219646 GTTGGGTTGCATTGCAGTTG 58.780 50.000 11.76 0.00 40.61 3.16
3492 5853 0.532417 TTGGGTTGCATTGCAGTTGC 60.532 50.000 11.76 14.80 40.61 4.17
3504 5865 1.516161 GCAGTTGCAGACATGAGTGA 58.484 50.000 0.00 0.00 41.59 3.41
3505 5866 2.082231 GCAGTTGCAGACATGAGTGAT 58.918 47.619 0.00 0.00 41.59 3.06
3506 5867 2.095532 GCAGTTGCAGACATGAGTGATC 59.904 50.000 0.00 0.00 41.59 2.92
3521 5882 4.779489 TGAGTGATCCCTTCTCATTCTCAA 59.221 41.667 0.00 0.00 34.00 3.02
3537 5898 6.764308 ATTCTCAATGAATGACGATGGTTT 57.236 33.333 0.00 0.00 43.20 3.27
3539 5900 4.635765 TCTCAATGAATGACGATGGTTTCC 59.364 41.667 0.00 0.00 33.47 3.13
3540 5901 4.588899 TCAATGAATGACGATGGTTTCCT 58.411 39.130 0.00 0.00 31.50 3.36
3541 5902 4.395854 TCAATGAATGACGATGGTTTCCTG 59.604 41.667 0.00 0.00 31.50 3.86
3542 5903 2.083774 TGAATGACGATGGTTTCCTGC 58.916 47.619 0.00 0.00 0.00 4.85
3556 5927 4.081476 GGTTTCCTGCTAATTTCCTGCATT 60.081 41.667 0.00 0.00 36.07 3.56
3561 5932 4.178540 CTGCTAATTTCCTGCATTGTTGG 58.821 43.478 0.00 0.00 36.07 3.77
3601 5977 8.642935 TTATGCAGCTACAGAGTTAGATAGAT 57.357 34.615 0.00 0.00 0.00 1.98
3602 5978 9.740710 TTATGCAGCTACAGAGTTAGATAGATA 57.259 33.333 0.00 0.00 0.00 1.98
3603 5979 7.441890 TGCAGCTACAGAGTTAGATAGATAC 57.558 40.000 0.00 0.00 0.00 2.24
3604 5980 6.998673 TGCAGCTACAGAGTTAGATAGATACA 59.001 38.462 0.00 0.00 0.00 2.29
3605 5981 7.174080 TGCAGCTACAGAGTTAGATAGATACAG 59.826 40.741 0.00 0.00 0.00 2.74
3606 5982 7.174253 GCAGCTACAGAGTTAGATAGATACAGT 59.826 40.741 0.00 0.00 0.00 3.55
3637 6030 7.926555 AGTTGAGTTACAGGCATATATGTACAC 59.073 37.037 14.14 3.24 31.83 2.90
3638 6031 7.354751 TGAGTTACAGGCATATATGTACACA 57.645 36.000 14.14 0.00 31.83 3.72
3639 6032 7.207383 TGAGTTACAGGCATATATGTACACAC 58.793 38.462 14.14 5.12 31.83 3.82
3640 6033 7.119709 AGTTACAGGCATATATGTACACACA 57.880 36.000 14.14 0.00 39.52 3.72
3674 6067 9.855021 GGTGAGCAAGCTAATTAGATTTAAAAA 57.145 29.630 16.85 0.00 27.90 1.94
3717 6114 3.055312 ACCCCAACTAGTAAGTAAGCAGC 60.055 47.826 0.00 0.00 33.75 5.25
3722 6119 3.444388 AACTAGTAAGTAAGCAGCGAGCT 59.556 43.478 0.00 0.54 46.54 4.09
3723 6120 4.639310 AACTAGTAAGTAAGCAGCGAGCTA 59.361 41.667 7.13 0.00 44.65 3.32
3724 6121 5.125097 AACTAGTAAGTAAGCAGCGAGCTAA 59.875 40.000 7.13 0.00 44.65 3.09
3725 6122 6.349944 AACTAGTAAGTAAGCAGCGAGCTAAA 60.350 38.462 7.13 0.00 44.65 1.85
3726 6123 8.312165 AACTAGTAAGTAAGCAGCGAGCTAAAC 61.312 40.741 7.13 8.78 44.65 2.01
3849 6259 1.004277 GCATGGTTCTGGTTACAGGGA 59.996 52.381 0.00 0.00 44.99 4.20
3852 6262 3.502123 TGGTTCTGGTTACAGGGAAAG 57.498 47.619 0.00 0.00 44.99 2.62
3853 6263 2.781174 TGGTTCTGGTTACAGGGAAAGT 59.219 45.455 0.00 0.00 44.99 2.66
3854 6264 3.146847 GGTTCTGGTTACAGGGAAAGTG 58.853 50.000 0.00 0.00 44.99 3.16
3857 6267 0.111639 TGGTTACAGGGAAAGTGGCC 59.888 55.000 0.00 0.00 0.00 5.36
3858 6268 0.611062 GGTTACAGGGAAAGTGGCCC 60.611 60.000 0.00 0.00 46.40 5.80
3864 6274 4.735358 GGAAAGTGGCCCCCGTCC 62.735 72.222 0.00 0.00 0.00 4.79
3885 6295 2.354510 CGTGTTCTGAAACATGGTGTGT 59.645 45.455 0.00 0.00 46.58 3.72
3888 6298 2.049888 TCTGAAACATGGTGTGTGCA 57.950 45.000 0.00 0.00 41.14 4.57
3895 6305 1.481772 ACATGGTGTGTGCAAAAAGCT 59.518 42.857 0.00 0.00 45.94 3.74
3897 6307 2.007360 TGGTGTGTGCAAAAAGCTTG 57.993 45.000 0.00 0.00 45.94 4.01
3899 6309 1.289276 GTGTGTGCAAAAAGCTTGGG 58.711 50.000 0.00 0.00 45.94 4.12
3917 6327 1.288127 GGTCGTCTACCGTTGCTGT 59.712 57.895 0.00 0.00 38.88 4.40
3935 6345 0.966920 GTCGGGACAGGAAGAACTCA 59.033 55.000 0.00 0.00 0.00 3.41
3953 6363 0.462047 CATAGTCCGGGTGCCTGTTC 60.462 60.000 0.00 0.00 0.00 3.18
3957 6367 3.953775 CCGGGTGCCTGTTCCTGT 61.954 66.667 0.00 0.00 0.00 4.00
3959 6369 2.282462 GGGTGCCTGTTCCTGTGG 60.282 66.667 0.00 0.00 0.00 4.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.961326 AACTCATGCCAAAATTAGTAATCCT 57.039 32.000 0.00 0.00 0.00 3.24
1 2 7.706607 GGAAACTCATGCCAAAATTAGTAATCC 59.293 37.037 0.00 0.00 0.00 3.01
2 3 7.706607 GGGAAACTCATGCCAAAATTAGTAATC 59.293 37.037 0.00 0.00 0.00 1.75
3 4 7.555965 GGGAAACTCATGCCAAAATTAGTAAT 58.444 34.615 0.00 0.00 0.00 1.89
4 5 6.349777 CGGGAAACTCATGCCAAAATTAGTAA 60.350 38.462 0.00 0.00 0.00 2.24
5 6 5.124776 CGGGAAACTCATGCCAAAATTAGTA 59.875 40.000 0.00 0.00 0.00 1.82
6 7 4.082245 CGGGAAACTCATGCCAAAATTAGT 60.082 41.667 0.00 0.00 0.00 2.24
7 8 4.423732 CGGGAAACTCATGCCAAAATTAG 58.576 43.478 0.00 0.00 0.00 1.73
8 9 3.367910 GCGGGAAACTCATGCCAAAATTA 60.368 43.478 0.00 0.00 0.00 1.40
9 10 2.612721 GCGGGAAACTCATGCCAAAATT 60.613 45.455 0.00 0.00 0.00 1.82
10 11 1.066929 GCGGGAAACTCATGCCAAAAT 60.067 47.619 0.00 0.00 0.00 1.82
11 12 0.316841 GCGGGAAACTCATGCCAAAA 59.683 50.000 0.00 0.00 0.00 2.44
12 13 1.861542 CGCGGGAAACTCATGCCAAA 61.862 55.000 0.00 0.00 0.00 3.28
13 14 2.331893 CGCGGGAAACTCATGCCAA 61.332 57.895 0.00 0.00 0.00 4.52
14 15 2.745884 CGCGGGAAACTCATGCCA 60.746 61.111 0.00 0.00 0.00 4.92
15 16 3.508840 CCGCGGGAAACTCATGCC 61.509 66.667 20.10 0.00 0.00 4.40
25 26 4.417641 GGATCTAGATCCGCGGGA 57.582 61.111 31.23 14.94 46.84 5.14
43 44 3.062234 GCACTGCAAGAACTTATACGGAC 59.938 47.826 0.00 0.00 37.43 4.79
54 55 6.496911 TCCTACTATATATGGCACTGCAAGAA 59.503 38.462 2.82 0.00 37.43 2.52
58 59 5.333581 ACTCCTACTATATATGGCACTGCA 58.666 41.667 2.82 0.00 0.00 4.41
64 65 8.278729 AGAAACGTACTCCTACTATATATGGC 57.721 38.462 0.00 0.00 0.00 4.40
74 75 4.091509 CACATGCAAGAAACGTACTCCTAC 59.908 45.833 0.00 0.00 0.00 3.18
75 76 4.242475 CACATGCAAGAAACGTACTCCTA 58.758 43.478 0.00 0.00 0.00 2.94
76 77 3.067106 CACATGCAAGAAACGTACTCCT 58.933 45.455 0.00 0.00 0.00 3.69
77 78 2.412847 GCACATGCAAGAAACGTACTCC 60.413 50.000 0.00 0.00 41.59 3.85
78 79 2.412847 GGCACATGCAAGAAACGTACTC 60.413 50.000 6.15 0.00 44.36 2.59
79 80 1.535462 GGCACATGCAAGAAACGTACT 59.465 47.619 6.15 0.00 44.36 2.73
80 81 1.535462 AGGCACATGCAAGAAACGTAC 59.465 47.619 6.15 0.00 44.36 3.67
81 82 1.804151 GAGGCACATGCAAGAAACGTA 59.196 47.619 6.15 0.00 44.36 3.57
82 83 0.593128 GAGGCACATGCAAGAAACGT 59.407 50.000 6.15 0.00 44.36 3.99
83 84 0.453282 CGAGGCACATGCAAGAAACG 60.453 55.000 6.15 0.00 44.36 3.60
84 85 0.730494 GCGAGGCACATGCAAGAAAC 60.730 55.000 6.15 0.00 44.36 2.78
85 86 1.171549 TGCGAGGCACATGCAAGAAA 61.172 50.000 6.15 0.00 44.36 2.52
99 100 0.179197 CAGATTTGTGCAGCTGCGAG 60.179 55.000 32.11 12.27 45.83 5.03
157 428 3.703001 ACATGTTAAGAGGGTGACAGG 57.297 47.619 0.00 0.00 0.00 4.00
162 433 4.396166 GTGGATCAACATGTTAAGAGGGTG 59.604 45.833 11.53 0.00 0.00 4.61
170 441 4.582240 TGCACAAAGTGGATCAACATGTTA 59.418 37.500 11.53 0.49 33.64 2.41
171 442 3.384146 TGCACAAAGTGGATCAACATGTT 59.616 39.130 4.92 4.92 33.64 2.71
185 459 4.100529 CGGAGCATATTCTTTGCACAAAG 58.899 43.478 15.45 15.45 46.82 2.77
207 481 5.808042 AATGATGCAGTGACATCTAACAC 57.192 39.130 20.71 0.00 45.51 3.32
255 532 7.317842 GATGCATCCATCTGTATCCTATTTG 57.682 40.000 16.23 0.00 43.62 2.32
302 579 1.911057 AACAAAAGCAGAGTAGCCCC 58.089 50.000 0.00 0.00 34.23 5.80
303 580 4.010349 ACATAACAAAAGCAGAGTAGCCC 58.990 43.478 0.00 0.00 34.23 5.19
357 637 7.768807 AGAGTAACAGGGAAGCATATACTAG 57.231 40.000 0.00 0.00 0.00 2.57
410 695 4.268644 CGTTGGACATGATCACATCAGTAC 59.731 45.833 0.00 0.00 43.53 2.73
480 765 9.404848 CAACATGGATGAGCATATCCTATTATT 57.595 33.333 17.06 5.44 45.59 1.40
481 766 7.501559 GCAACATGGATGAGCATATCCTATTAT 59.498 37.037 17.06 3.40 45.59 1.28
549 834 7.611079 TCCATCCCAATTCCATTTTGAATTTTC 59.389 33.333 0.00 0.00 41.74 2.29
612 898 3.947910 TTGTTTACGGAGGGAGTACTG 57.052 47.619 0.00 0.00 0.00 2.74
613 899 6.803366 ATATTTGTTTACGGAGGGAGTACT 57.197 37.500 0.00 0.00 0.00 2.73
614 900 8.416329 TCTTATATTTGTTTACGGAGGGAGTAC 58.584 37.037 0.00 0.00 0.00 2.73
615 901 8.537728 TCTTATATTTGTTTACGGAGGGAGTA 57.462 34.615 0.00 0.00 0.00 2.59
616 902 7.125356 ACTCTTATATTTGTTTACGGAGGGAGT 59.875 37.037 0.00 0.00 0.00 3.85
617 903 7.438459 CACTCTTATATTTGTTTACGGAGGGAG 59.562 40.741 0.00 0.00 0.00 4.30
618 904 7.093201 ACACTCTTATATTTGTTTACGGAGGGA 60.093 37.037 0.00 0.00 0.00 4.20
619 905 7.046033 ACACTCTTATATTTGTTTACGGAGGG 58.954 38.462 0.00 0.00 0.00 4.30
620 906 8.488651 AACACTCTTATATTTGTTTACGGAGG 57.511 34.615 0.00 0.00 0.00 4.30
668 954 9.566432 CCTCTGTAAAGGAATATAAGAGCATTT 57.434 33.333 0.00 0.00 38.87 2.32
669 955 8.160106 CCCTCTGTAAAGGAATATAAGAGCATT 58.840 37.037 0.00 0.00 38.87 3.56
670 956 7.514127 TCCCTCTGTAAAGGAATATAAGAGCAT 59.486 37.037 0.00 0.00 38.87 3.79
671 957 6.844388 TCCCTCTGTAAAGGAATATAAGAGCA 59.156 38.462 0.00 0.00 38.87 4.26
672 958 7.015779 ACTCCCTCTGTAAAGGAATATAAGAGC 59.984 40.741 0.00 0.00 38.87 4.09
673 959 8.485578 ACTCCCTCTGTAAAGGAATATAAGAG 57.514 38.462 0.00 0.00 38.87 2.85
676 962 9.670442 ACATACTCCCTCTGTAAAGGAATATAA 57.330 33.333 0.00 0.00 38.87 0.98
677 963 9.310449 GACATACTCCCTCTGTAAAGGAATATA 57.690 37.037 0.00 0.00 38.87 0.86
678 964 8.013667 AGACATACTCCCTCTGTAAAGGAATAT 58.986 37.037 0.00 0.00 38.87 1.28
679 965 7.363031 AGACATACTCCCTCTGTAAAGGAATA 58.637 38.462 0.00 0.00 38.87 1.75
680 966 6.206042 AGACATACTCCCTCTGTAAAGGAAT 58.794 40.000 0.00 0.00 38.87 3.01
681 967 5.590818 AGACATACTCCCTCTGTAAAGGAA 58.409 41.667 0.00 0.00 38.87 3.36
682 968 5.208294 AGACATACTCCCTCTGTAAAGGA 57.792 43.478 0.00 0.00 38.87 3.36
683 969 5.941555 AAGACATACTCCCTCTGTAAAGG 57.058 43.478 0.00 0.00 36.08 3.11
684 970 6.109359 CCAAAGACATACTCCCTCTGTAAAG 58.891 44.000 0.00 0.00 0.00 1.85
685 971 5.045869 CCCAAAGACATACTCCCTCTGTAAA 60.046 44.000 0.00 0.00 0.00 2.01
686 972 4.469945 CCCAAAGACATACTCCCTCTGTAA 59.530 45.833 0.00 0.00 0.00 2.41
687 973 4.030913 CCCAAAGACATACTCCCTCTGTA 58.969 47.826 0.00 0.00 0.00 2.74
688 974 2.840651 CCCAAAGACATACTCCCTCTGT 59.159 50.000 0.00 0.00 0.00 3.41
689 975 2.171448 CCCCAAAGACATACTCCCTCTG 59.829 54.545 0.00 0.00 0.00 3.35
690 976 2.482494 CCCCAAAGACATACTCCCTCT 58.518 52.381 0.00 0.00 0.00 3.69
691 977 1.134068 GCCCCAAAGACATACTCCCTC 60.134 57.143 0.00 0.00 0.00 4.30
692 978 0.919710 GCCCCAAAGACATACTCCCT 59.080 55.000 0.00 0.00 0.00 4.20
693 979 0.106669 GGCCCCAAAGACATACTCCC 60.107 60.000 0.00 0.00 0.00 4.30
694 980 0.623723 TGGCCCCAAAGACATACTCC 59.376 55.000 0.00 0.00 0.00 3.85
695 981 2.301346 CATGGCCCCAAAGACATACTC 58.699 52.381 0.00 0.00 0.00 2.59
696 982 1.063717 CCATGGCCCCAAAGACATACT 60.064 52.381 0.00 0.00 0.00 2.12
697 983 1.402787 CCATGGCCCCAAAGACATAC 58.597 55.000 0.00 0.00 0.00 2.39
698 984 0.396974 GCCATGGCCCCAAAGACATA 60.397 55.000 27.24 0.00 34.56 2.29
699 985 1.686800 GCCATGGCCCCAAAGACAT 60.687 57.895 27.24 0.00 34.56 3.06
700 986 2.283821 GCCATGGCCCCAAAGACA 60.284 61.111 27.24 0.00 34.56 3.41
701 987 1.266867 ATTGCCATGGCCCCAAAGAC 61.267 55.000 33.44 3.62 41.09 3.01
702 988 1.080722 ATTGCCATGGCCCCAAAGA 59.919 52.632 33.44 10.68 41.09 2.52
703 989 1.222387 CATTGCCATGGCCCCAAAG 59.778 57.895 33.44 14.65 41.09 2.77
706 992 3.006415 TAGCATTGCCATGGCCCCA 62.006 57.895 33.44 18.05 41.09 4.96
716 1002 4.453819 AGAAGAACAGAACTGTAGCATTGC 59.546 41.667 7.90 0.00 44.13 3.56
726 1012 4.786425 AGGCTGAAAAGAAGAACAGAACT 58.214 39.130 0.00 0.00 32.90 3.01
801 1087 6.100134 AGGATCCCAATTCCATTTTTACCATG 59.900 38.462 8.55 0.00 35.59 3.66
803 1089 5.598754 AGGATCCCAATTCCATTTTTACCA 58.401 37.500 8.55 0.00 35.59 3.25
804 1090 6.070251 ACAAGGATCCCAATTCCATTTTTACC 60.070 38.462 8.55 0.00 35.59 2.85
805 1091 6.818142 CACAAGGATCCCAATTCCATTTTTAC 59.182 38.462 8.55 0.00 35.59 2.01
806 1092 6.500049 ACACAAGGATCCCAATTCCATTTTTA 59.500 34.615 8.55 0.00 35.59 1.52
807 1093 5.310331 ACACAAGGATCCCAATTCCATTTTT 59.690 36.000 8.55 0.00 35.59 1.94
824 1111 0.037303 ATGACTGCCAGGACACAAGG 59.963 55.000 0.00 0.00 0.00 3.61
825 1112 1.162698 CATGACTGCCAGGACACAAG 58.837 55.000 0.00 0.00 0.00 3.16
837 1124 9.008965 AGCAGTACTAGTATATTCTCATGACTG 57.991 37.037 5.75 7.65 34.06 3.51
852 1139 7.745620 AAATAACAAAAGCAGCAGTACTAGT 57.254 32.000 0.00 0.00 0.00 2.57
853 1140 9.922305 GATAAATAACAAAAGCAGCAGTACTAG 57.078 33.333 0.00 0.00 0.00 2.57
854 1141 9.443323 TGATAAATAACAAAAGCAGCAGTACTA 57.557 29.630 0.00 0.00 0.00 1.82
855 1142 8.237267 GTGATAAATAACAAAAGCAGCAGTACT 58.763 33.333 0.00 0.00 0.00 2.73
856 1143 7.484959 GGTGATAAATAACAAAAGCAGCAGTAC 59.515 37.037 0.00 0.00 0.00 2.73
880 1170 8.265764 GGGAGAAAGAATATACACAGTAAAGGT 58.734 37.037 0.00 0.00 0.00 3.50
886 1176 7.682787 ATCAGGGAGAAAGAATATACACAGT 57.317 36.000 0.00 0.00 0.00 3.55
894 1184 7.676043 CAGGAGGTATATCAGGGAGAAAGAATA 59.324 40.741 0.00 0.00 0.00 1.75
897 1187 5.103043 ACAGGAGGTATATCAGGGAGAAAGA 60.103 44.000 0.00 0.00 0.00 2.52
898 1188 5.151454 ACAGGAGGTATATCAGGGAGAAAG 58.849 45.833 0.00 0.00 0.00 2.62
913 1203 7.914427 TGATGATATAACAGTAACAGGAGGT 57.086 36.000 0.00 0.00 0.00 3.85
915 1205 9.987272 TGATTGATGATATAACAGTAACAGGAG 57.013 33.333 0.00 0.00 0.00 3.69
948 1239 7.576861 AGAGTAGTAGAAAGAGATGTTAGCC 57.423 40.000 0.00 0.00 0.00 3.93
963 1254 9.698309 TGACTTCTGAAATGAAAAGAGTAGTAG 57.302 33.333 0.00 0.00 0.00 2.57
964 1255 9.698309 CTGACTTCTGAAATGAAAAGAGTAGTA 57.302 33.333 0.00 0.00 0.00 1.82
965 1256 7.172361 GCTGACTTCTGAAATGAAAAGAGTAGT 59.828 37.037 0.00 0.00 0.00 2.73
966 1257 7.360776 GGCTGACTTCTGAAATGAAAAGAGTAG 60.361 40.741 0.00 0.00 0.00 2.57
1164 1456 1.080995 CCTTCTGCCGCTTCTTCTCG 61.081 60.000 0.00 0.00 0.00 4.04
1299 1591 1.805945 CCTGACGCGCTTGTAGTCC 60.806 63.158 5.73 0.00 34.24 3.85
1311 1603 1.444553 GACCTCGAAGTGCCTGACG 60.445 63.158 0.00 0.00 0.00 4.35
1356 1648 2.246977 CTCTCGGCGTCGATCTCG 59.753 66.667 14.65 0.06 45.04 4.04
1366 1658 4.593864 GGCGACCATCCTCTCGGC 62.594 72.222 0.00 0.00 46.42 5.54
1551 1843 3.396911 GACGATCTCCAGCGCGACA 62.397 63.158 12.10 0.00 0.00 4.35
1650 1942 1.619332 GAGACAAGGAACCCGAGAGTT 59.381 52.381 0.00 0.00 0.00 3.01
1668 1960 0.459078 TGAGCTTGATCTCGGCTGAG 59.541 55.000 16.98 16.98 43.99 3.35
1725 2017 1.492133 CCTTCAGAGGGCCCTTCACA 61.492 60.000 29.39 10.24 39.55 3.58
1737 2029 2.922503 TGCGCCACCTCCTTCAGA 60.923 61.111 4.18 0.00 0.00 3.27
1818 2110 2.513897 GCGCTGTACACCATCCCC 60.514 66.667 0.00 0.00 0.00 4.81
1967 2259 2.345760 TACTCCACGAACTCGCCCC 61.346 63.158 0.00 0.00 44.43 5.80
2028 2320 0.325671 TGAGCTTCCCCTCCCAGTAG 60.326 60.000 0.00 0.00 0.00 2.57
2245 2537 5.385198 TGTTAGGCAGAAGAGGAACATTTT 58.615 37.500 0.00 0.00 0.00 1.82
2246 2538 4.985538 TGTTAGGCAGAAGAGGAACATTT 58.014 39.130 0.00 0.00 0.00 2.32
2247 2539 4.640771 TGTTAGGCAGAAGAGGAACATT 57.359 40.909 0.00 0.00 0.00 2.71
2248 2540 4.851639 ATGTTAGGCAGAAGAGGAACAT 57.148 40.909 0.00 0.00 33.75 2.71
2333 2630 8.777413 GCACATATCTACTGAAATGAATGCTAA 58.223 33.333 0.00 0.00 0.00 3.09
2334 2631 7.933033 TGCACATATCTACTGAAATGAATGCTA 59.067 33.333 0.00 0.00 0.00 3.49
2335 2632 6.769341 TGCACATATCTACTGAAATGAATGCT 59.231 34.615 0.00 0.00 0.00 3.79
2336 2633 6.962686 TGCACATATCTACTGAAATGAATGC 58.037 36.000 0.00 0.00 0.00 3.56
2337 2634 7.955864 CGATGCACATATCTACTGAAATGAATG 59.044 37.037 0.00 0.00 0.00 2.67
2338 2635 7.874528 TCGATGCACATATCTACTGAAATGAAT 59.125 33.333 0.00 0.00 0.00 2.57
2339 2636 7.209475 TCGATGCACATATCTACTGAAATGAA 58.791 34.615 0.00 0.00 0.00 2.57
2340 2637 6.748132 TCGATGCACATATCTACTGAAATGA 58.252 36.000 0.00 0.00 0.00 2.57
2341 2638 6.644181 ACTCGATGCACATATCTACTGAAATG 59.356 38.462 0.00 0.00 0.00 2.32
2342 2639 6.753180 ACTCGATGCACATATCTACTGAAAT 58.247 36.000 0.00 0.00 0.00 2.17
2343 2640 6.149129 ACTCGATGCACATATCTACTGAAA 57.851 37.500 0.00 0.00 0.00 2.69
2344 2641 5.774498 ACTCGATGCACATATCTACTGAA 57.226 39.130 0.00 0.00 0.00 3.02
2345 2642 6.846350 CATACTCGATGCACATATCTACTGA 58.154 40.000 0.00 0.00 0.00 3.41
2359 2656 1.000171 TGCAGCCTAGCATACTCGATG 60.000 52.381 0.00 0.00 40.11 3.84
2360 2657 1.271934 CTGCAGCCTAGCATACTCGAT 59.728 52.381 0.00 0.00 44.68 3.59
2361 2658 0.670706 CTGCAGCCTAGCATACTCGA 59.329 55.000 0.00 0.00 44.68 4.04
2362 2659 0.319383 CCTGCAGCCTAGCATACTCG 60.319 60.000 8.66 0.00 44.68 4.18
2363 2660 1.000731 CTCCTGCAGCCTAGCATACTC 59.999 57.143 8.66 0.00 44.68 2.59
2364 2661 1.047002 CTCCTGCAGCCTAGCATACT 58.953 55.000 8.66 0.00 44.68 2.12
2365 2662 0.602372 GCTCCTGCAGCCTAGCATAC 60.602 60.000 21.94 0.76 44.68 2.39
2366 2663 1.750930 GCTCCTGCAGCCTAGCATA 59.249 57.895 21.94 0.00 44.68 3.14
2367 2664 2.509916 GCTCCTGCAGCCTAGCAT 59.490 61.111 21.94 0.00 44.68 3.79
2375 2672 2.161808 CAGAAATTCACAGCTCCTGCAG 59.838 50.000 6.78 6.78 42.74 4.41
2376 2673 2.156917 CAGAAATTCACAGCTCCTGCA 58.843 47.619 0.00 0.00 42.74 4.41
2377 2674 1.135460 GCAGAAATTCACAGCTCCTGC 60.135 52.381 0.00 0.00 38.69 4.85
2378 2675 1.129998 CGCAGAAATTCACAGCTCCTG 59.870 52.381 0.00 0.00 37.52 3.86
2379 2676 1.446907 CGCAGAAATTCACAGCTCCT 58.553 50.000 0.00 0.00 0.00 3.69
2380 2677 0.179179 GCGCAGAAATTCACAGCTCC 60.179 55.000 0.30 0.00 0.00 4.70
2381 2678 0.518636 TGCGCAGAAATTCACAGCTC 59.481 50.000 5.66 0.00 0.00 4.09
2382 2679 1.171308 ATGCGCAGAAATTCACAGCT 58.829 45.000 18.32 0.00 0.00 4.24
2383 2680 1.986698 AATGCGCAGAAATTCACAGC 58.013 45.000 18.32 0.00 0.00 4.40
2384 2681 3.853671 GGTAAATGCGCAGAAATTCACAG 59.146 43.478 18.32 0.00 0.00 3.66
2385 2682 3.254411 TGGTAAATGCGCAGAAATTCACA 59.746 39.130 18.32 4.45 0.00 3.58
2386 2683 3.832276 TGGTAAATGCGCAGAAATTCAC 58.168 40.909 18.32 0.46 0.00 3.18
2387 2684 4.022416 AGTTGGTAAATGCGCAGAAATTCA 60.022 37.500 18.32 7.13 0.00 2.57
2388 2685 4.324402 CAGTTGGTAAATGCGCAGAAATTC 59.676 41.667 18.32 4.34 0.00 2.17
2389 2686 4.236935 CAGTTGGTAAATGCGCAGAAATT 58.763 39.130 18.32 10.81 0.00 1.82
2390 2687 3.836949 CAGTTGGTAAATGCGCAGAAAT 58.163 40.909 18.32 4.12 0.00 2.17
2391 2688 2.606795 GCAGTTGGTAAATGCGCAGAAA 60.607 45.455 18.32 0.00 0.00 2.52
2392 2689 1.068610 GCAGTTGGTAAATGCGCAGAA 60.069 47.619 18.32 0.00 0.00 3.02
2393 2690 0.521291 GCAGTTGGTAAATGCGCAGA 59.479 50.000 18.32 0.00 0.00 4.26
2394 2691 0.240678 TGCAGTTGGTAAATGCGCAG 59.759 50.000 18.32 0.00 42.92 5.18
2395 2692 0.887247 ATGCAGTTGGTAAATGCGCA 59.113 45.000 14.96 14.96 42.92 6.09
2396 2693 1.655099 CAATGCAGTTGGTAAATGCGC 59.345 47.619 0.00 0.00 42.92 6.09
2397 2694 2.916716 GACAATGCAGTTGGTAAATGCG 59.083 45.455 9.05 0.00 42.92 4.73
2398 2695 3.911868 TGACAATGCAGTTGGTAAATGC 58.088 40.909 7.00 7.00 42.28 3.56
2399 2696 5.927689 ACAATGACAATGCAGTTGGTAAATG 59.072 36.000 11.76 7.54 42.28 2.32
2400 2697 5.927689 CACAATGACAATGCAGTTGGTAAAT 59.072 36.000 11.76 0.76 42.28 1.40
2401 2698 5.163468 ACACAATGACAATGCAGTTGGTAAA 60.163 36.000 11.76 0.00 42.28 2.01
2402 2699 4.340666 ACACAATGACAATGCAGTTGGTAA 59.659 37.500 11.76 0.00 42.28 2.85
2403 2700 3.888323 ACACAATGACAATGCAGTTGGTA 59.112 39.130 11.76 3.24 42.28 3.25
2404 2701 2.694628 ACACAATGACAATGCAGTTGGT 59.305 40.909 11.76 0.00 42.28 3.67
2405 2702 3.374220 ACACAATGACAATGCAGTTGG 57.626 42.857 11.76 0.00 42.28 3.77
2406 2703 5.112220 ACTACACAATGACAATGCAGTTG 57.888 39.130 0.00 0.00 43.64 3.16
2407 2704 5.067674 ACAACTACACAATGACAATGCAGTT 59.932 36.000 0.00 0.00 0.00 3.16
2408 2705 4.580167 ACAACTACACAATGACAATGCAGT 59.420 37.500 0.00 0.00 0.00 4.40
2409 2706 5.112220 ACAACTACACAATGACAATGCAG 57.888 39.130 0.00 0.00 0.00 4.41
2410 2707 5.280164 CAACAACTACACAATGACAATGCA 58.720 37.500 0.00 0.00 0.00 3.96
2411 2708 4.148696 GCAACAACTACACAATGACAATGC 59.851 41.667 0.00 0.00 0.00 3.56
2412 2709 5.522456 AGCAACAACTACACAATGACAATG 58.478 37.500 0.00 0.00 0.00 2.82
2413 2710 5.772825 AGCAACAACTACACAATGACAAT 57.227 34.783 0.00 0.00 0.00 2.71
2414 2711 5.339177 CAAGCAACAACTACACAATGACAA 58.661 37.500 0.00 0.00 0.00 3.18
2415 2712 4.733230 GCAAGCAACAACTACACAATGACA 60.733 41.667 0.00 0.00 0.00 3.58
2416 2713 3.730715 GCAAGCAACAACTACACAATGAC 59.269 43.478 0.00 0.00 0.00 3.06
2417 2714 3.631686 AGCAAGCAACAACTACACAATGA 59.368 39.130 0.00 0.00 0.00 2.57
2418 2715 3.968649 AGCAAGCAACAACTACACAATG 58.031 40.909 0.00 0.00 0.00 2.82
2419 2716 3.885297 AGAGCAAGCAACAACTACACAAT 59.115 39.130 0.00 0.00 0.00 2.71
2420 2717 3.065233 CAGAGCAAGCAACAACTACACAA 59.935 43.478 0.00 0.00 0.00 3.33
2421 2718 2.613595 CAGAGCAAGCAACAACTACACA 59.386 45.455 0.00 0.00 0.00 3.72
2422 2719 2.872245 TCAGAGCAAGCAACAACTACAC 59.128 45.455 0.00 0.00 0.00 2.90
2423 2720 3.192541 TCAGAGCAAGCAACAACTACA 57.807 42.857 0.00 0.00 0.00 2.74
2424 2721 4.023707 ACAATCAGAGCAAGCAACAACTAC 60.024 41.667 0.00 0.00 0.00 2.73
2425 2722 4.136796 ACAATCAGAGCAAGCAACAACTA 58.863 39.130 0.00 0.00 0.00 2.24
2426 2723 2.954318 ACAATCAGAGCAAGCAACAACT 59.046 40.909 0.00 0.00 0.00 3.16
2427 2724 3.360249 ACAATCAGAGCAAGCAACAAC 57.640 42.857 0.00 0.00 0.00 3.32
2437 2734 2.355132 CTGCTGGATGAACAATCAGAGC 59.645 50.000 10.28 0.00 40.39 4.09
2444 2741 3.788227 AGTTACCTGCTGGATGAACAA 57.212 42.857 17.64 0.00 37.04 2.83
2447 2744 6.486657 GCAATATTAGTTACCTGCTGGATGAA 59.513 38.462 17.64 4.59 37.04 2.57
2451 2748 5.630415 AGCAATATTAGTTACCTGCTGGA 57.370 39.130 17.64 0.00 38.64 3.86
2455 2752 5.296780 TCAAGCAGCAATATTAGTTACCTGC 59.703 40.000 0.00 0.00 43.19 4.85
2456 2753 6.925610 TCAAGCAGCAATATTAGTTACCTG 57.074 37.500 0.00 0.00 0.00 4.00
2458 2755 7.707104 ACATTCAAGCAGCAATATTAGTTACC 58.293 34.615 0.00 0.00 0.00 2.85
2462 2773 5.817296 TCGACATTCAAGCAGCAATATTAGT 59.183 36.000 0.00 0.00 0.00 2.24
2468 2779 3.940852 TGTATCGACATTCAAGCAGCAAT 59.059 39.130 0.00 0.00 0.00 3.56
2481 2792 8.708742 GCAGCAATATTATACTTTGTATCGACA 58.291 33.333 0.00 0.00 0.00 4.35
2482 2793 8.926710 AGCAGCAATATTATACTTTGTATCGAC 58.073 33.333 0.00 0.00 0.00 4.20
2526 2857 7.379098 ACAGAACGTTCTTCTTTCTTTCTTT 57.621 32.000 27.79 0.00 33.33 2.52
2528 2859 6.986904 AACAGAACGTTCTTCTTTCTTTCT 57.013 33.333 27.79 0.00 33.33 2.52
2536 2867 3.606687 ACACCAAACAGAACGTTCTTCT 58.393 40.909 27.79 14.89 36.59 2.85
2538 2869 3.754323 TGAACACCAAACAGAACGTTCTT 59.246 39.130 27.79 16.10 36.59 2.52
2539 2870 3.340034 TGAACACCAAACAGAACGTTCT 58.660 40.909 24.93 24.93 36.59 3.01
2541 2872 4.398044 AGAATGAACACCAAACAGAACGTT 59.602 37.500 0.00 0.00 40.50 3.99
2542 2873 3.945285 AGAATGAACACCAAACAGAACGT 59.055 39.130 0.00 0.00 0.00 3.99
2543 2874 4.035091 TGAGAATGAACACCAAACAGAACG 59.965 41.667 0.00 0.00 0.00 3.95
2548 2879 7.757941 TTATCATGAGAATGAACACCAAACA 57.242 32.000 0.09 0.00 33.83 2.83
2549 2880 7.221452 GCATTATCATGAGAATGAACACCAAAC 59.779 37.037 35.65 17.39 41.20 2.93
2550 2881 7.123098 AGCATTATCATGAGAATGAACACCAAA 59.877 33.333 35.65 0.12 41.20 3.28
2554 2885 9.608617 CATAAGCATTATCATGAGAATGAACAC 57.391 33.333 35.65 22.30 39.78 3.32
2557 2888 9.563748 TGTCATAAGCATTATCATGAGAATGAA 57.436 29.630 35.65 23.62 39.78 2.57
2569 2900 9.273016 GTACACCTGTTATGTCATAAGCATTAT 57.727 33.333 5.49 0.00 43.29 1.28
2571 2902 6.542370 GGTACACCTGTTATGTCATAAGCATT 59.458 38.462 5.49 0.00 0.00 3.56
2582 2913 1.066430 ACAGCGGGTACACCTGTTATG 60.066 52.381 11.99 8.02 44.34 1.90
2583 2914 1.066430 CACAGCGGGTACACCTGTTAT 60.066 52.381 14.37 0.00 44.34 1.89
2584 2915 0.319083 CACAGCGGGTACACCTGTTA 59.681 55.000 14.37 0.00 44.34 2.41
3043 3389 1.541379 TCATCCAGAGTTCCGAACGA 58.459 50.000 5.62 0.00 36.23 3.85
3044 3390 2.363788 TTCATCCAGAGTTCCGAACG 57.636 50.000 5.62 0.00 36.23 3.95
3045 3391 6.927294 ATTAATTCATCCAGAGTTCCGAAC 57.073 37.500 2.81 2.81 0.00 3.95
3046 3392 6.257849 CGAATTAATTCATCCAGAGTTCCGAA 59.742 38.462 24.23 0.00 36.61 4.30
3061 3463 6.156932 AGCAAAGCAAAAGCGAATTAATTC 57.843 33.333 16.79 16.79 0.00 2.17
3066 3468 2.545106 CCAAGCAAAGCAAAAGCGAATT 59.455 40.909 0.00 0.00 0.00 2.17
3067 3469 2.137523 CCAAGCAAAGCAAAAGCGAAT 58.862 42.857 0.00 0.00 0.00 3.34
3071 3473 4.057432 TCATAACCAAGCAAAGCAAAAGC 58.943 39.130 0.00 0.00 0.00 3.51
3136 3539 2.031683 GTCACGAACCTCACCAAAGTTG 59.968 50.000 0.00 0.00 0.00 3.16
3137 3540 2.285977 GTCACGAACCTCACCAAAGTT 58.714 47.619 0.00 0.00 0.00 2.66
3138 3541 1.208535 TGTCACGAACCTCACCAAAGT 59.791 47.619 0.00 0.00 0.00 2.66
3140 3543 1.208535 AGTGTCACGAACCTCACCAAA 59.791 47.619 0.00 0.00 0.00 3.28
3142 3545 0.828022 AAGTGTCACGAACCTCACCA 59.172 50.000 0.00 0.00 0.00 4.17
3144 3547 2.030457 CACAAAGTGTCACGAACCTCAC 59.970 50.000 0.00 0.00 0.00 3.51
3145 3548 2.276201 CACAAAGTGTCACGAACCTCA 58.724 47.619 0.00 0.00 0.00 3.86
3147 3550 2.006888 CACACAAAGTGTCACGAACCT 58.993 47.619 0.00 0.00 43.92 3.50
3148 3551 2.452006 CACACAAAGTGTCACGAACC 57.548 50.000 0.00 0.00 43.92 3.62
3161 4524 3.540617 ACAATGACACTGCTACACACAA 58.459 40.909 0.00 0.00 0.00 3.33
3173 4536 2.612721 GGGGCAAATCCAACAATGACAC 60.613 50.000 0.00 0.00 36.21 3.67
3174 4537 1.622811 GGGGCAAATCCAACAATGACA 59.377 47.619 0.00 0.00 36.21 3.58
3175 4538 1.404047 CGGGGCAAATCCAACAATGAC 60.404 52.381 0.00 0.00 36.21 3.06
3176 4539 0.894141 CGGGGCAAATCCAACAATGA 59.106 50.000 0.00 0.00 36.21 2.57
3179 4542 1.123928 AAACGGGGCAAATCCAACAA 58.876 45.000 0.00 0.00 36.21 2.83
3182 4545 4.284746 AGATTAAAAACGGGGCAAATCCAA 59.715 37.500 0.00 0.00 36.21 3.53
3183 4546 3.835395 AGATTAAAAACGGGGCAAATCCA 59.165 39.130 0.00 0.00 36.21 3.41
3184 4547 4.180817 CAGATTAAAAACGGGGCAAATCC 58.819 43.478 0.00 0.00 0.00 3.01
3185 4548 4.625311 CACAGATTAAAAACGGGGCAAATC 59.375 41.667 0.00 0.00 0.00 2.17
3186 4549 4.562552 CCACAGATTAAAAACGGGGCAAAT 60.563 41.667 0.00 0.00 0.00 2.32
3187 4550 3.243907 CCACAGATTAAAAACGGGGCAAA 60.244 43.478 0.00 0.00 0.00 3.68
3190 4553 2.164338 TCCACAGATTAAAAACGGGGC 58.836 47.619 0.00 0.00 0.00 5.80
3191 4554 5.167845 CAATTCCACAGATTAAAAACGGGG 58.832 41.667 0.00 0.00 0.00 5.73
3192 4555 5.167845 CCAATTCCACAGATTAAAAACGGG 58.832 41.667 0.00 0.00 0.00 5.28
3193 4556 5.778862 ACCAATTCCACAGATTAAAAACGG 58.221 37.500 0.00 0.00 0.00 4.44
3194 4557 6.699642 ACAACCAATTCCACAGATTAAAAACG 59.300 34.615 0.00 0.00 0.00 3.60
3195 4558 8.432110 AACAACCAATTCCACAGATTAAAAAC 57.568 30.769 0.00 0.00 0.00 2.43
3197 4560 9.137459 TCTAACAACCAATTCCACAGATTAAAA 57.863 29.630 0.00 0.00 0.00 1.52
3198 4561 8.698973 TCTAACAACCAATTCCACAGATTAAA 57.301 30.769 0.00 0.00 0.00 1.52
3200 4563 7.942341 AGTTCTAACAACCAATTCCACAGATTA 59.058 33.333 0.00 0.00 0.00 1.75
3201 4564 6.777580 AGTTCTAACAACCAATTCCACAGATT 59.222 34.615 0.00 0.00 0.00 2.40
3202 4565 6.306987 AGTTCTAACAACCAATTCCACAGAT 58.693 36.000 0.00 0.00 0.00 2.90
3204 4567 6.039270 TCAAGTTCTAACAACCAATTCCACAG 59.961 38.462 0.00 0.00 0.00 3.66
3205 4568 5.888724 TCAAGTTCTAACAACCAATTCCACA 59.111 36.000 0.00 0.00 0.00 4.17
3206 4569 6.385649 TCAAGTTCTAACAACCAATTCCAC 57.614 37.500 0.00 0.00 0.00 4.02
3209 4572 6.319141 AGCTCAAGTTCTAACAACCAATTC 57.681 37.500 0.00 0.00 0.00 2.17
3210 4573 5.049405 CGAGCTCAAGTTCTAACAACCAATT 60.049 40.000 15.40 0.00 0.00 2.32
3211 4574 4.452455 CGAGCTCAAGTTCTAACAACCAAT 59.548 41.667 15.40 0.00 0.00 3.16
3212 4575 3.807622 CGAGCTCAAGTTCTAACAACCAA 59.192 43.478 15.40 0.00 0.00 3.67
3214 4577 3.650139 TCGAGCTCAAGTTCTAACAACC 58.350 45.455 15.40 0.00 0.00 3.77
3215 4578 3.122111 GCTCGAGCTCAAGTTCTAACAAC 59.878 47.826 29.88 0.00 38.21 3.32
3216 4579 3.318017 GCTCGAGCTCAAGTTCTAACAA 58.682 45.455 29.88 0.00 38.21 2.83
3217 4580 2.947852 GCTCGAGCTCAAGTTCTAACA 58.052 47.619 29.88 0.00 38.21 2.41
3234 4907 0.677731 TGCAACATGGGTGCTAGCTC 60.678 55.000 17.23 12.62 0.00 4.09
3243 4916 2.819019 TCACATACAGTTGCAACATGGG 59.181 45.455 30.11 24.23 0.00 4.00
3249 4922 6.148315 CAGAAGAAGATCACATACAGTTGCAA 59.852 38.462 0.00 0.00 0.00 4.08
3250 4923 5.640783 CAGAAGAAGATCACATACAGTTGCA 59.359 40.000 0.00 0.00 0.00 4.08
3254 4927 6.596309 TGACAGAAGAAGATCACATACAGT 57.404 37.500 0.00 0.00 0.00 3.55
3255 4928 6.018913 GCATGACAGAAGAAGATCACATACAG 60.019 42.308 0.00 0.00 0.00 2.74
3256 4929 5.814188 GCATGACAGAAGAAGATCACATACA 59.186 40.000 0.00 0.00 0.00 2.29
3257 4930 5.814188 TGCATGACAGAAGAAGATCACATAC 59.186 40.000 0.00 0.00 0.00 2.39
3258 4931 5.981174 TGCATGACAGAAGAAGATCACATA 58.019 37.500 0.00 0.00 0.00 2.29
3260 4933 4.276058 TGCATGACAGAAGAAGATCACA 57.724 40.909 0.00 0.00 0.00 3.58
3261 4934 5.117584 AGATGCATGACAGAAGAAGATCAC 58.882 41.667 2.46 0.00 0.00 3.06
3262 4935 5.354842 AGATGCATGACAGAAGAAGATCA 57.645 39.130 2.46 0.00 0.00 2.92
3264 4937 5.991861 AGAAGATGCATGACAGAAGAAGAT 58.008 37.500 2.46 0.00 0.00 2.40
3265 4938 5.417754 AGAAGATGCATGACAGAAGAAGA 57.582 39.130 2.46 0.00 0.00 2.87
3266 4939 6.403418 GGAAAGAAGATGCATGACAGAAGAAG 60.403 42.308 2.46 0.00 0.00 2.85
3267 4940 5.413833 GGAAAGAAGATGCATGACAGAAGAA 59.586 40.000 2.46 0.00 0.00 2.52
3283 5586 3.921021 CAGCACGTACTAGTGGAAAGAAG 59.079 47.826 5.39 0.00 42.09 2.85
3289 5592 3.128068 CACATACAGCACGTACTAGTGGA 59.872 47.826 5.39 0.00 42.09 4.02
3292 5595 4.882427 AGATCACATACAGCACGTACTAGT 59.118 41.667 0.00 0.00 31.27 2.57
3293 5596 5.425577 AGATCACATACAGCACGTACTAG 57.574 43.478 0.00 0.00 31.27 2.57
3294 5597 5.355910 TGAAGATCACATACAGCACGTACTA 59.644 40.000 0.00 0.00 31.27 1.82
3295 5598 4.157840 TGAAGATCACATACAGCACGTACT 59.842 41.667 0.00 0.00 31.27 2.73
3296 5599 4.265556 GTGAAGATCACATACAGCACGTAC 59.734 45.833 5.65 0.00 46.22 3.67
3297 5600 4.421058 GTGAAGATCACATACAGCACGTA 58.579 43.478 5.65 0.00 46.22 3.57
3298 5601 3.254060 GTGAAGATCACATACAGCACGT 58.746 45.455 5.65 0.00 46.22 4.49
3299 5602 3.914555 GTGAAGATCACATACAGCACG 57.085 47.619 5.65 0.00 46.22 5.34
3319 5655 3.420606 CAGTGGCAGAGCGCTGTG 61.421 66.667 28.78 28.78 44.17 3.66
3320 5656 3.466791 AACAGTGGCAGAGCGCTGT 62.467 57.895 18.48 8.56 43.23 4.40
3321 5657 2.667536 AACAGTGGCAGAGCGCTG 60.668 61.111 18.48 13.73 45.13 5.18
3323 5659 3.426568 GGAACAGTGGCAGAGCGC 61.427 66.667 0.00 0.00 41.28 5.92
3324 5660 2.743928 GGGAACAGTGGCAGAGCG 60.744 66.667 0.00 0.00 0.00 5.03
3325 5661 1.968540 GTGGGAACAGTGGCAGAGC 60.969 63.158 0.00 0.00 44.46 4.09
3326 5662 0.321122 GAGTGGGAACAGTGGCAGAG 60.321 60.000 0.00 0.00 46.33 3.35
3327 5663 0.764369 AGAGTGGGAACAGTGGCAGA 60.764 55.000 0.00 0.00 46.33 4.26
3328 5664 0.321122 GAGAGTGGGAACAGTGGCAG 60.321 60.000 0.00 0.00 46.33 4.85
3329 5665 1.053835 TGAGAGTGGGAACAGTGGCA 61.054 55.000 0.00 0.00 46.33 4.92
3330 5666 0.321122 CTGAGAGTGGGAACAGTGGC 60.321 60.000 0.00 0.00 46.33 5.01
3331 5667 0.322975 CCTGAGAGTGGGAACAGTGG 59.677 60.000 0.00 0.00 46.33 4.00
3332 5668 0.322975 CCCTGAGAGTGGGAACAGTG 59.677 60.000 0.00 0.00 46.33 3.66
3344 5680 1.980765 ACAGAGCATTGTTCCCTGAGA 59.019 47.619 0.00 0.00 0.00 3.27
3353 5689 7.733969 ACTATGATAAGATCACAGAGCATTGT 58.266 34.615 1.87 0.00 43.01 2.71
3354 5690 7.871463 TGACTATGATAAGATCACAGAGCATTG 59.129 37.037 1.87 0.00 43.01 2.82
3359 5695 8.738106 TGCTATGACTATGATAAGATCACAGAG 58.262 37.037 1.87 0.00 43.01 3.35
3360 5696 8.641498 TGCTATGACTATGATAAGATCACAGA 57.359 34.615 1.87 0.00 43.01 3.41
3376 5712 8.790718 CAGGCATCTTTTATTTATGCTATGACT 58.209 33.333 6.49 0.00 44.29 3.41
3377 5713 7.540055 GCAGGCATCTTTTATTTATGCTATGAC 59.460 37.037 12.92 0.00 44.29 3.06
3378 5714 7.309377 GGCAGGCATCTTTTATTTATGCTATGA 60.309 37.037 12.92 0.00 44.29 2.15
3381 5717 6.070656 AGGCAGGCATCTTTTATTTATGCTA 58.929 36.000 6.49 0.00 44.29 3.49
3393 5729 0.541296 AGCAACAAGGCAGGCATCTT 60.541 50.000 0.00 0.00 35.83 2.40
3395 5731 1.214589 CAGCAACAAGGCAGGCATC 59.785 57.895 0.00 0.00 35.83 3.91
3396 5732 2.280552 CCAGCAACAAGGCAGGCAT 61.281 57.895 0.00 0.00 33.50 4.40
3422 5783 9.298250 CTCTTAGCTTATGGGATACTGTAACTA 57.702 37.037 0.00 0.00 0.00 2.24
3428 5789 7.952671 TGTAACTCTTAGCTTATGGGATACTG 58.047 38.462 0.00 0.00 0.00 2.74
3434 5795 5.978814 ACACTGTAACTCTTAGCTTATGGG 58.021 41.667 0.00 0.00 0.00 4.00
3467 5828 0.600782 GCAATGCAACCCAACACTGG 60.601 55.000 0.00 0.00 43.10 4.00
3489 5850 1.911357 AGGGATCACTCATGTCTGCAA 59.089 47.619 0.00 0.00 0.00 4.08
3490 5851 1.576577 AGGGATCACTCATGTCTGCA 58.423 50.000 0.00 0.00 0.00 4.41
3491 5852 2.170187 AGAAGGGATCACTCATGTCTGC 59.830 50.000 0.00 0.00 0.00 4.26
3492 5853 3.450096 TGAGAAGGGATCACTCATGTCTG 59.550 47.826 0.00 0.00 36.04 3.51
3493 5854 3.717576 TGAGAAGGGATCACTCATGTCT 58.282 45.455 0.00 0.00 36.04 3.41
3494 5855 4.686191 ATGAGAAGGGATCACTCATGTC 57.314 45.455 16.96 5.09 45.61 3.06
3495 5856 4.720773 AGAATGAGAAGGGATCACTCATGT 59.279 41.667 17.81 11.56 46.30 3.21
3496 5857 5.163332 TGAGAATGAGAAGGGATCACTCATG 60.163 44.000 17.81 0.00 46.30 3.07
3498 5859 4.356436 TGAGAATGAGAAGGGATCACTCA 58.644 43.478 0.00 5.81 43.25 3.41
3499 5860 5.350504 TTGAGAATGAGAAGGGATCACTC 57.649 43.478 0.00 0.00 0.00 3.51
3500 5861 5.427806 TCATTGAGAATGAGAAGGGATCACT 59.572 40.000 0.00 0.00 42.69 3.41
3501 5862 5.678583 TCATTGAGAATGAGAAGGGATCAC 58.321 41.667 0.00 0.00 42.69 3.06
3502 5863 5.963214 TCATTGAGAATGAGAAGGGATCA 57.037 39.130 0.00 0.00 42.69 2.92
3521 5882 2.684881 GCAGGAAACCATCGTCATTCAT 59.315 45.455 0.00 0.00 0.00 2.57
3529 5890 3.947834 AGGAAATTAGCAGGAAACCATCG 59.052 43.478 0.00 0.00 0.00 3.84
3534 5895 4.725790 ATGCAGGAAATTAGCAGGAAAC 57.274 40.909 0.00 0.00 42.14 2.78
3536 5897 4.088634 ACAATGCAGGAAATTAGCAGGAA 58.911 39.130 0.00 0.00 42.14 3.36
3537 5898 3.700538 ACAATGCAGGAAATTAGCAGGA 58.299 40.909 0.00 0.00 42.14 3.86
3539 5900 4.178540 CCAACAATGCAGGAAATTAGCAG 58.821 43.478 0.00 0.00 42.14 4.24
3540 5901 3.577848 ACCAACAATGCAGGAAATTAGCA 59.422 39.130 0.00 0.00 43.14 3.49
3541 5902 3.928375 CACCAACAATGCAGGAAATTAGC 59.072 43.478 0.00 0.00 0.00 3.09
3542 5903 5.389859 TCACCAACAATGCAGGAAATTAG 57.610 39.130 0.00 0.00 0.00 1.73
3556 5927 8.596293 TGCATAATATAGATCTGATCACCAACA 58.404 33.333 19.12 3.68 0.00 3.33
3561 5932 9.462174 GTAGCTGCATAATATAGATCTGATCAC 57.538 37.037 19.12 0.00 0.00 3.06
3599 5975 5.470368 TGTAACTCAACTCAGCACTGTATC 58.530 41.667 0.00 0.00 0.00 2.24
3601 5977 4.262036 CCTGTAACTCAACTCAGCACTGTA 60.262 45.833 0.00 0.00 0.00 2.74
3602 5978 3.493350 CCTGTAACTCAACTCAGCACTGT 60.493 47.826 0.00 0.00 0.00 3.55
3603 5979 3.062763 CCTGTAACTCAACTCAGCACTG 58.937 50.000 0.00 0.00 0.00 3.66
3604 5980 2.548920 GCCTGTAACTCAACTCAGCACT 60.549 50.000 0.00 0.00 0.00 4.40
3605 5981 1.801178 GCCTGTAACTCAACTCAGCAC 59.199 52.381 0.00 0.00 0.00 4.40
3606 5982 1.416030 TGCCTGTAACTCAACTCAGCA 59.584 47.619 0.00 0.00 0.00 4.41
3717 6114 4.142816 CCAGACCAGAAAATGTTTAGCTCG 60.143 45.833 0.00 0.00 0.00 5.03
3722 6119 6.605594 AGTGAAACCAGACCAGAAAATGTTTA 59.394 34.615 0.00 0.00 37.80 2.01
3723 6120 5.422012 AGTGAAACCAGACCAGAAAATGTTT 59.578 36.000 0.00 0.00 37.80 2.83
3724 6121 4.956075 AGTGAAACCAGACCAGAAAATGTT 59.044 37.500 0.00 0.00 37.80 2.71
3725 6122 4.536765 AGTGAAACCAGACCAGAAAATGT 58.463 39.130 0.00 0.00 37.80 2.71
3726 6123 5.520376 AAGTGAAACCAGACCAGAAAATG 57.480 39.130 0.00 0.00 37.80 2.32
3727 6124 5.656416 TGAAAGTGAAACCAGACCAGAAAAT 59.344 36.000 0.00 0.00 37.80 1.82
3728 6125 5.013547 TGAAAGTGAAACCAGACCAGAAAA 58.986 37.500 0.00 0.00 37.80 2.29
3729 6126 4.594970 TGAAAGTGAAACCAGACCAGAAA 58.405 39.130 0.00 0.00 37.80 2.52
3730 6127 4.229304 TGAAAGTGAAACCAGACCAGAA 57.771 40.909 0.00 0.00 37.80 3.02
3826 6232 0.687920 TGTAACCAGAACCATGCGGA 59.312 50.000 0.00 0.00 35.59 5.54
3857 6267 1.070105 TTTCAGAACACGGACGGGG 59.930 57.895 0.00 0.00 0.00 5.73
3858 6268 0.531090 TGTTTCAGAACACGGACGGG 60.531 55.000 0.00 0.00 40.71 5.28
3872 6282 3.242381 GCTTTTTGCACACACCATGTTTC 60.242 43.478 0.00 0.00 40.64 2.78
3882 6292 0.177836 ACCCCAAGCTTTTTGCACAC 59.822 50.000 0.00 0.00 45.94 3.82
3883 6293 0.463620 GACCCCAAGCTTTTTGCACA 59.536 50.000 0.00 0.00 45.94 4.57
3885 6295 1.040339 ACGACCCCAAGCTTTTTGCA 61.040 50.000 0.00 0.00 45.94 4.08
3888 6298 2.501261 GTAGACGACCCCAAGCTTTTT 58.499 47.619 0.00 0.00 0.00 1.94
3895 6305 1.667151 CAACGGTAGACGACCCCAA 59.333 57.895 0.00 0.00 46.81 4.12
3897 6307 2.125793 GCAACGGTAGACGACCCC 60.126 66.667 0.00 0.00 46.81 4.95
3917 6327 1.938585 ATGAGTTCTTCCTGTCCCGA 58.061 50.000 0.00 0.00 0.00 5.14
3935 6345 1.623542 GGAACAGGCACCCGGACTAT 61.624 60.000 0.73 0.00 29.10 2.12
3953 6363 3.260100 AAGGACCAGGCCCACAGG 61.260 66.667 0.00 0.00 0.00 4.00
3957 6367 2.231380 GGAAGAAGGACCAGGCCCA 61.231 63.158 0.00 0.00 0.00 5.36
3959 6369 1.002011 GTGGAAGAAGGACCAGGCC 60.002 63.158 0.00 0.00 36.82 5.19


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.