Multiple sequence alignment - TraesCS7A01G559100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G559100 chr7A 100.000 3343 0 0 1 3343 731095060 731098402 0.000000e+00 6174.0
1 TraesCS7A01G559100 chr7A 87.317 2318 207 30 333 2610 731185870 731188140 0.000000e+00 2571.0
2 TraesCS7A01G559100 chr7A 87.193 2319 209 30 333 2610 731156907 731159178 0.000000e+00 2556.0
3 TraesCS7A01G559100 chr7A 87.306 2253 199 36 333 2545 731125469 731127674 0.000000e+00 2495.0
4 TraesCS7A01G559100 chr7A 90.712 1895 125 11 1453 3343 731397762 731395915 0.000000e+00 2477.0
5 TraesCS7A01G559100 chr7A 86.067 1902 178 38 1489 3343 731220342 731222203 0.000000e+00 1964.0
6 TraesCS7A01G559100 chr7A 96.866 989 26 3 2339 3325 731013266 731014251 0.000000e+00 1650.0
7 TraesCS7A01G559100 chr7A 86.758 1465 133 34 1512 2945 731506620 731505186 0.000000e+00 1574.0
8 TraesCS7A01G559100 chr7A 83.066 1618 221 30 903 2484 675021872 675023472 0.000000e+00 1421.0
9 TraesCS7A01G559100 chr7A 93.539 681 37 3 2663 3343 731430460 731429787 0.000000e+00 1007.0
10 TraesCS7A01G559100 chr7A 84.569 823 80 23 2429 3231 731012437 731013232 0.000000e+00 773.0
11 TraesCS7A01G559100 chr7A 88.850 565 48 5 958 1516 731539468 731538913 0.000000e+00 680.0
12 TraesCS7A01G559100 chr7A 87.255 612 45 12 2750 3343 731159573 731160169 0.000000e+00 667.0
13 TraesCS7A01G559100 chr7A 87.092 612 46 12 2750 3343 731129869 731130465 0.000000e+00 662.0
14 TraesCS7A01G559100 chr7A 87.092 612 46 11 2750 3343 731188535 731189131 0.000000e+00 662.0
15 TraesCS7A01G559100 chr7A 94.375 320 10 6 25 341 731185516 731185830 5.010000e-133 484.0
16 TraesCS7A01G559100 chr7A 93.769 321 12 6 25 341 731156551 731156867 3.020000e-130 475.0
17 TraesCS7A01G559100 chr7A 93.750 320 13 6 25 341 731125114 731125429 1.090000e-129 473.0
18 TraesCS7A01G559100 chr7A 100.000 54 0 0 2685 2738 731505410 731505357 2.120000e-17 100.0
19 TraesCS7A01G559100 chr7A 98.148 54 1 0 2685 2738 675026664 675026717 9.870000e-16 95.3
20 TraesCS7A01G559100 chr7A 98.148 54 1 0 2685 2738 731012731 731012784 9.870000e-16 95.3
21 TraesCS7A01G559100 chr7A 98.148 54 1 0 2685 2738 731221570 731221623 9.870000e-16 95.3
22 TraesCS7A01G559100 chr7A 100.000 39 0 0 1 39 731125074 731125112 4.630000e-09 73.1
23 TraesCS7A01G559100 chr7A 100.000 39 0 0 1 39 731156511 731156549 4.630000e-09 73.1
24 TraesCS7A01G559100 chr7A 100.000 39 0 0 1 39 731185476 731185514 4.630000e-09 73.1
25 TraesCS7A01G559100 chr4B 90.485 2186 127 34 333 2489 625072211 625074344 0.000000e+00 2809.0
26 TraesCS7A01G559100 chr4B 85.131 1029 92 27 2352 3343 625074340 625075344 0.000000e+00 996.0
27 TraesCS7A01G559100 chr4B 89.231 325 18 10 25 341 625071860 625072175 1.120000e-104 390.0
28 TraesCS7A01G559100 chr7D 88.651 1586 145 17 871 2430 634659433 634661009 0.000000e+00 1899.0
29 TraesCS7A01G559100 chr7D 90.232 1423 115 15 960 2369 634751437 634750026 0.000000e+00 1836.0
30 TraesCS7A01G559100 chr7D 87.330 884 85 19 2475 3343 634661016 634661887 0.000000e+00 987.0
31 TraesCS7A01G559100 chr7D 83.642 648 87 11 898 1532 634454554 634455195 2.870000e-165 592.0
32 TraesCS7A01G559100 chr7D 100.000 54 0 0 2685 2738 634661266 634661319 2.120000e-17 100.0
33 TraesCS7A01G559100 chr7B 84.270 2028 233 40 939 2905 741625004 741623002 0.000000e+00 1899.0
34 TraesCS7A01G559100 chr7B 84.709 1478 179 21 1503 2946 741541906 741543370 0.000000e+00 1434.0
35 TraesCS7A01G559100 chr7B 91.126 462 36 3 945 1402 741482117 741482577 3.660000e-174 621.0
36 TraesCS7A01G559100 chr7B 90.647 417 32 4 993 1402 741541493 741541909 6.310000e-152 547.0
37 TraesCS7A01G559100 chr7B 92.401 329 22 1 3018 3343 741543370 741543698 1.820000e-127 466.0
38 TraesCS7A01G559100 chr7B 86.667 120 13 3 416 534 741625327 741625210 2.710000e-26 130.0
39 TraesCS7A01G559100 chr7B 100.000 54 0 0 2685 2738 741543146 741543199 2.120000e-17 100.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G559100 chr7A 731095060 731098402 3342 False 6174.000000 6174 100.000000 1 3343 1 chr7A.!!$F1 3342
1 TraesCS7A01G559100 chr7A 731395915 731397762 1847 True 2477.000000 2477 90.712000 1453 3343 1 chr7A.!!$R1 1890
2 TraesCS7A01G559100 chr7A 731220342 731222203 1861 False 1029.650000 1964 92.107500 1489 3343 2 chr7A.!!$F7 1854
3 TraesCS7A01G559100 chr7A 731429787 731430460 673 True 1007.000000 1007 93.539000 2663 3343 1 chr7A.!!$R2 680
4 TraesCS7A01G559100 chr7A 731185476 731189131 3655 False 947.525000 2571 92.196000 1 3343 4 chr7A.!!$F6 3342
5 TraesCS7A01G559100 chr7A 731156511 731160169 3658 False 942.775000 2556 92.054250 1 3343 4 chr7A.!!$F5 3342
6 TraesCS7A01G559100 chr7A 731125074 731130465 5391 False 925.775000 2495 92.037000 1 3343 4 chr7A.!!$F4 3342
7 TraesCS7A01G559100 chr7A 731012437 731014251 1814 False 839.433333 1650 93.194333 2339 3325 3 chr7A.!!$F3 986
8 TraesCS7A01G559100 chr7A 731505186 731506620 1434 True 837.000000 1574 93.379000 1512 2945 2 chr7A.!!$R4 1433
9 TraesCS7A01G559100 chr7A 675021872 675026717 4845 False 758.150000 1421 90.607000 903 2738 2 chr7A.!!$F2 1835
10 TraesCS7A01G559100 chr7A 731538913 731539468 555 True 680.000000 680 88.850000 958 1516 1 chr7A.!!$R3 558
11 TraesCS7A01G559100 chr4B 625071860 625075344 3484 False 1398.333333 2809 88.282333 25 3343 3 chr4B.!!$F1 3318
12 TraesCS7A01G559100 chr7D 634750026 634751437 1411 True 1836.000000 1836 90.232000 960 2369 1 chr7D.!!$R1 1409
13 TraesCS7A01G559100 chr7D 634659433 634661887 2454 False 995.333333 1899 91.993667 871 3343 3 chr7D.!!$F2 2472
14 TraesCS7A01G559100 chr7D 634454554 634455195 641 False 592.000000 592 83.642000 898 1532 1 chr7D.!!$F1 634
15 TraesCS7A01G559100 chr7B 741623002 741625327 2325 True 1014.500000 1899 85.468500 416 2905 2 chr7B.!!$R1 2489
16 TraesCS7A01G559100 chr7B 741541493 741543698 2205 False 636.750000 1434 91.939250 993 3343 4 chr7B.!!$F2 2350

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
706 783 0.107312 ATGGCTTCGCAGAGCTGAAT 60.107 50.0 0.85 0.0 38.43 2.57 F
1763 1938 0.249120 TCCCGTCCACAACTATGCAG 59.751 55.0 0.00 0.0 0.00 4.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1811 1987 0.316937 CACGCACGCAGTCAAAACAT 60.317 50.0 0.0 0.0 41.61 2.71 R
2744 6259 0.608640 CAAGGTAGTGAAGCCTCCGT 59.391 55.0 0.0 0.0 33.24 4.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
340 414 1.918293 AATCCCTGACCCTCACGCA 60.918 57.895 0.00 0.0 0.00 5.24
341 415 1.903877 AATCCCTGACCCTCACGCAG 61.904 60.000 0.00 0.0 0.00 5.18
358 432 1.695597 AGCCCCTCCCCAATCTCAG 60.696 63.158 0.00 0.0 0.00 3.35
398 472 0.822121 GTTCCCGTGCCCAAGAAAGT 60.822 55.000 0.00 0.0 0.00 2.66
445 519 2.683572 TCCTAAGCCCGCTCAGCA 60.684 61.111 0.00 0.0 0.00 4.41
446 520 2.244117 CTCCTAAGCCCGCTCAGCAA 62.244 60.000 0.00 0.0 0.00 3.91
449 524 1.098050 CTAAGCCCGCTCAGCAAATT 58.902 50.000 0.00 0.0 0.00 1.82
473 548 1.547372 GAGCATTGATGGCACCAAGTT 59.453 47.619 0.00 0.0 0.00 2.66
481 556 2.356665 TGGCACCAAGTTTGCTTCTA 57.643 45.000 0.00 0.0 40.07 2.10
482 557 2.875296 TGGCACCAAGTTTGCTTCTAT 58.125 42.857 0.00 0.0 40.07 1.98
496 572 2.628657 GCTTCTATGTGTATCCGGGACT 59.371 50.000 0.00 0.0 0.00 3.85
498 574 3.878237 TCTATGTGTATCCGGGACTCT 57.122 47.619 0.00 0.0 0.00 3.24
512 588 2.461695 GGACTCTGTCTCCATTCCTGA 58.538 52.381 0.00 0.0 32.47 3.86
584 660 6.088137 TGAATTTCCCCTTTTTATCCAACCT 58.912 36.000 0.00 0.0 0.00 3.50
586 662 7.904022 TGAATTTCCCCTTTTTATCCAACCTAT 59.096 33.333 0.00 0.0 0.00 2.57
696 773 1.099879 ATGGAGCTGAATGGCTTCGC 61.100 55.000 0.00 0.0 43.20 4.70
703 780 1.022982 TGAATGGCTTCGCAGAGCTG 61.023 55.000 8.07 0.0 38.43 4.24
704 781 0.742281 GAATGGCTTCGCAGAGCTGA 60.742 55.000 0.85 0.0 38.43 4.26
705 782 0.321919 AATGGCTTCGCAGAGCTGAA 60.322 50.000 0.85 0.0 38.43 3.02
706 783 0.107312 ATGGCTTCGCAGAGCTGAAT 60.107 50.000 0.85 0.0 38.43 2.57
707 784 1.022982 TGGCTTCGCAGAGCTGAATG 61.023 55.000 0.85 0.0 38.43 2.67
708 785 1.712977 GGCTTCGCAGAGCTGAATGG 61.713 60.000 0.85 0.0 38.43 3.16
709 786 1.720301 CTTCGCAGAGCTGAATGGC 59.280 57.895 0.85 0.0 38.43 4.40
710 787 0.743701 CTTCGCAGAGCTGAATGGCT 60.744 55.000 0.85 0.0 46.11 4.75
711 788 0.321919 TTCGCAGAGCTGAATGGCTT 60.322 50.000 0.85 0.0 43.20 4.35
712 789 0.742281 TCGCAGAGCTGAATGGCTTC 60.742 55.000 0.85 0.0 43.20 3.86
713 790 1.022982 CGCAGAGCTGAATGGCTTCA 61.023 55.000 0.85 0.0 43.20 3.02
714 791 0.450983 GCAGAGCTGAATGGCTTCAC 59.549 55.000 0.85 0.0 43.20 3.18
715 792 1.817357 CAGAGCTGAATGGCTTCACA 58.183 50.000 0.00 0.0 43.20 3.58
716 793 1.738350 CAGAGCTGAATGGCTTCACAG 59.262 52.381 0.00 0.0 43.20 3.66
717 794 1.627329 AGAGCTGAATGGCTTCACAGA 59.373 47.619 0.00 0.0 43.20 3.41
718 795 2.008329 GAGCTGAATGGCTTCACAGAG 58.992 52.381 0.00 0.0 43.20 3.35
719 796 0.450983 GCTGAATGGCTTCACAGAGC 59.549 55.000 0.00 0.0 41.96 4.09
720 797 1.949547 GCTGAATGGCTTCACAGAGCT 60.950 52.381 0.00 0.0 42.32 4.09
721 798 1.738350 CTGAATGGCTTCACAGAGCTG 59.262 52.381 0.00 0.0 42.32 4.24
765 842 4.653868 TGGTCGCCCTAATTTTCTAAACA 58.346 39.130 0.00 0.0 0.00 2.83
834 911 8.888579 ACAGGCATATTTGTAAGTAGATGTAC 57.111 34.615 0.00 0.0 0.00 2.90
847 924 9.750783 GTAAGTAGATGTACATAGGATTAGGGA 57.249 37.037 8.71 0.0 0.00 4.20
982 1095 0.832559 CCCTAACCCTCGATCCCCTC 60.833 65.000 0.00 0.0 0.00 4.30
1060 1201 1.337118 GGAGGAGATCTTCATCCGCT 58.663 55.000 3.21 0.0 45.87 5.52
1411 1580 2.863238 TGGAGATCCCTCTACCCTGTTA 59.137 50.000 0.00 0.0 39.38 2.41
1418 1587 3.112263 CCCTCTACCCTGTTACATCCAA 58.888 50.000 0.00 0.0 0.00 3.53
1468 1643 1.406614 GGTGAGCATCCTCTTGGACTG 60.407 57.143 0.00 0.0 46.51 3.51
1478 1653 1.558756 CTCTTGGACTGCAGGGAGATT 59.441 52.381 19.93 0.0 0.00 2.40
1525 1700 2.112297 GTGGACCAAACGGGAGCA 59.888 61.111 0.00 0.0 41.15 4.26
1763 1938 0.249120 TCCCGTCCACAACTATGCAG 59.751 55.000 0.00 0.0 0.00 4.41
1811 1987 3.117701 TCCCTTCTTTGGAACACATGTCA 60.118 43.478 0.00 0.0 39.29 3.58
2005 2181 2.751436 CGTTGTGATGGGCAGGGG 60.751 66.667 0.00 0.0 0.00 4.79
2025 2201 4.014569 GGAGGAGCCCTTGAGATATTTC 57.985 50.000 0.00 0.0 31.76 2.17
2141 2324 3.956199 CTGGGCAGTATCATTCCATTTGT 59.044 43.478 0.00 0.0 0.00 2.83
2199 2382 2.565841 GCGCTCCAGAAGGTATTCATT 58.434 47.619 0.00 0.0 37.94 2.57
2203 2386 4.676546 GCTCCAGAAGGTATTCATTTTGC 58.323 43.478 0.00 0.0 37.94 3.68
2505 3039 7.278203 GGTTTTAAGCTGATGTCTTAGTACTCC 59.722 40.741 0.00 0.0 0.00 3.85
2738 6253 3.525800 ATTGGGCTTGACTACCTTGTT 57.474 42.857 0.00 0.0 0.00 2.83
2739 6254 3.306472 TTGGGCTTGACTACCTTGTTT 57.694 42.857 0.00 0.0 0.00 2.83
2740 6255 3.306472 TGGGCTTGACTACCTTGTTTT 57.694 42.857 0.00 0.0 0.00 2.43
2741 6256 3.637769 TGGGCTTGACTACCTTGTTTTT 58.362 40.909 0.00 0.0 0.00 1.94
3191 6744 0.319405 GCAAAATGAGCAGCTTGGGT 59.681 50.000 0.00 0.0 0.00 4.51
3255 6808 2.979678 TGCCTCCTTCCTAAGAAGTTGT 59.020 45.455 0.53 0.0 46.93 3.32
3260 6813 6.576442 GCCTCCTTCCTAAGAAGTTGTGATAA 60.576 42.308 0.53 0.0 46.93 1.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
298 323 1.264288 CAAAACACGCACTCTCCCTTC 59.736 52.381 0.00 0.00 0.00 3.46
340 414 1.695597 CTGAGATTGGGGAGGGGCT 60.696 63.158 0.00 0.00 0.00 5.19
341 415 2.761465 CCTGAGATTGGGGAGGGGC 61.761 68.421 0.00 0.00 0.00 5.80
374 448 2.111999 CTTGGGCACGGGAACTCTCA 62.112 60.000 0.00 0.00 0.00 3.27
398 472 1.736645 GCTTGTCGCCGAGCACTTA 60.737 57.895 0.00 0.00 45.92 2.24
445 519 3.101437 TGCCATCAATGCTCAGGAATTT 58.899 40.909 0.00 0.00 0.00 1.82
446 520 2.429610 GTGCCATCAATGCTCAGGAATT 59.570 45.455 0.00 0.00 0.00 2.17
449 524 0.394762 GGTGCCATCAATGCTCAGGA 60.395 55.000 0.00 0.00 0.00 3.86
458 533 1.412079 AGCAAACTTGGTGCCATCAA 58.588 45.000 0.00 0.00 43.27 2.57
473 548 3.035363 TCCCGGATACACATAGAAGCAA 58.965 45.455 0.73 0.00 0.00 3.91
481 556 2.032620 GACAGAGTCCCGGATACACAT 58.967 52.381 0.73 0.00 0.00 3.21
482 557 1.005569 AGACAGAGTCCCGGATACACA 59.994 52.381 0.73 0.00 32.18 3.72
512 588 5.124776 TCACTTGTTGGAATCTTTTTGTCGT 59.875 36.000 0.00 0.00 0.00 4.34
654 731 6.279513 TGGATTGGAAAATTGTCGCTTTAT 57.720 33.333 0.00 0.00 0.00 1.40
696 773 1.738350 CTGTGAAGCCATTCAGCTCTG 59.262 52.381 0.00 0.00 45.96 3.35
703 780 2.008329 CTCAGCTCTGTGAAGCCATTC 58.992 52.381 0.00 0.00 43.56 2.67
704 781 1.350351 ACTCAGCTCTGTGAAGCCATT 59.650 47.619 6.02 0.00 43.56 3.16
705 782 0.982704 ACTCAGCTCTGTGAAGCCAT 59.017 50.000 6.02 0.00 43.56 4.40
706 783 0.034476 CACTCAGCTCTGTGAAGCCA 59.966 55.000 9.36 0.00 43.56 4.75
707 784 1.297456 GCACTCAGCTCTGTGAAGCC 61.297 60.000 16.99 0.00 43.56 4.35
708 785 1.297456 GGCACTCAGCTCTGTGAAGC 61.297 60.000 16.99 8.56 44.79 3.86
709 786 0.673022 GGGCACTCAGCTCTGTGAAG 60.673 60.000 16.99 0.00 41.91 3.02
710 787 1.372683 GGGCACTCAGCTCTGTGAA 59.627 57.895 16.99 0.00 41.91 3.18
711 788 2.587247 GGGGCACTCAGCTCTGTGA 61.587 63.158 16.99 0.00 45.61 3.58
712 789 2.046507 GGGGCACTCAGCTCTGTG 60.047 66.667 10.36 10.36 45.61 3.66
713 790 2.527624 TGGGGCACTCAGCTCTGT 60.528 61.111 0.00 0.00 45.61 3.41
714 791 2.046507 GTGGGGCACTCAGCTCTG 60.047 66.667 0.00 0.00 45.61 3.35
715 792 2.203907 AGTGGGGCACTCAGCTCT 60.204 61.111 0.00 0.00 41.21 4.09
824 901 8.457757 ACTTCCCTAATCCTATGTACATCTACT 58.542 37.037 12.68 0.00 0.00 2.57
883 974 6.647895 GCCATTTTATTTAGCTCCATGGATTG 59.352 38.462 16.63 5.67 32.87 2.67
1256 1418 4.530857 AGGAGAAATCGGCGGCGG 62.531 66.667 31.73 13.01 0.00 6.13
1386 1554 1.501604 GGGTAGAGGGATCTCCAGTCT 59.498 57.143 0.00 2.53 40.83 3.24
1418 1587 0.108329 CTTCGCGGTAGGTCCACATT 60.108 55.000 6.13 0.00 35.57 2.71
1468 1643 2.158957 TCGTTATCACCAATCTCCCTGC 60.159 50.000 0.00 0.00 0.00 4.85
1478 1653 3.305813 GGTCACAGAGTTCGTTATCACCA 60.306 47.826 0.00 0.00 0.00 4.17
1763 1938 1.067495 GGAGGCTCGAGCATATACCAC 60.067 57.143 36.27 17.69 44.36 4.16
1768 1943 1.356124 AATGGGAGGCTCGAGCATAT 58.644 50.000 36.27 22.57 44.36 1.78
1811 1987 0.316937 CACGCACGCAGTCAAAACAT 60.317 50.000 0.00 0.00 41.61 2.71
1839 2015 1.228063 CAGCAGGCTGTGTCCAGTT 60.228 57.895 17.16 0.00 41.02 3.16
2005 2181 3.244735 GGGAAATATCTCAAGGGCTCCTC 60.245 52.174 0.00 0.00 30.89 3.71
2021 2197 3.593442 TGTTGACAGACAAGGGGAAAT 57.407 42.857 0.00 0.00 39.30 2.17
2025 2201 1.073763 TCCATGTTGACAGACAAGGGG 59.926 52.381 10.22 6.34 38.57 4.79
2141 2324 2.047750 TCGGCTGCACGCATTGTA 60.048 55.556 0.50 0.00 41.67 2.41
2199 2382 4.517075 TGAGTAACAATCCACATTCGCAAA 59.483 37.500 0.00 0.00 0.00 3.68
2203 2386 5.353956 TCCATTGAGTAACAATCCACATTCG 59.646 40.000 0.00 0.00 46.01 3.34
2659 4960 7.354751 ACCTTTCCTACTTGCAAAATTACAA 57.645 32.000 0.00 0.00 0.00 2.41
2739 6254 3.325716 AGGTAGTGAAGCCTCCGTAAAAA 59.674 43.478 0.00 0.00 0.00 1.94
2740 6255 2.901839 AGGTAGTGAAGCCTCCGTAAAA 59.098 45.455 0.00 0.00 0.00 1.52
2741 6256 2.532843 AGGTAGTGAAGCCTCCGTAAA 58.467 47.619 0.00 0.00 0.00 2.01
2742 6257 2.226962 AGGTAGTGAAGCCTCCGTAA 57.773 50.000 0.00 0.00 0.00 3.18
2743 6258 1.822990 CAAGGTAGTGAAGCCTCCGTA 59.177 52.381 0.00 0.00 33.24 4.02
2744 6259 0.608640 CAAGGTAGTGAAGCCTCCGT 59.391 55.000 0.00 0.00 33.24 4.69
2745 6260 0.608640 ACAAGGTAGTGAAGCCTCCG 59.391 55.000 0.00 0.00 33.24 4.63
2746 6261 1.623811 TGACAAGGTAGTGAAGCCTCC 59.376 52.381 0.00 0.00 33.24 4.30
2747 6262 3.402628 TTGACAAGGTAGTGAAGCCTC 57.597 47.619 0.00 0.00 33.24 4.70
2748 6263 3.136626 AGTTTGACAAGGTAGTGAAGCCT 59.863 43.478 0.00 0.00 36.51 4.58
2749 6264 3.477530 AGTTTGACAAGGTAGTGAAGCC 58.522 45.455 0.00 0.00 0.00 4.35
2750 6265 4.152580 GCTAGTTTGACAAGGTAGTGAAGC 59.847 45.833 0.00 0.00 0.00 3.86
2751 6266 5.542779 AGCTAGTTTGACAAGGTAGTGAAG 58.457 41.667 0.00 0.00 0.00 3.02
2752 6267 5.546621 AGCTAGTTTGACAAGGTAGTGAA 57.453 39.130 0.00 0.00 0.00 3.18
2753 6268 5.185249 CCTAGCTAGTTTGACAAGGTAGTGA 59.815 44.000 19.31 0.00 38.87 3.41
2754 6269 5.185249 TCCTAGCTAGTTTGACAAGGTAGTG 59.815 44.000 19.31 0.00 38.87 2.74
2755 6270 5.185442 GTCCTAGCTAGTTTGACAAGGTAGT 59.815 44.000 19.31 0.00 38.87 2.73
2756 6271 5.185249 TGTCCTAGCTAGTTTGACAAGGTAG 59.815 44.000 21.80 4.27 39.76 3.18
2757 6272 5.081728 TGTCCTAGCTAGTTTGACAAGGTA 58.918 41.667 21.80 5.58 33.35 3.08
2758 6273 3.901844 TGTCCTAGCTAGTTTGACAAGGT 59.098 43.478 21.80 0.00 33.35 3.50
3029 6577 4.661993 TCAACTTACAGCTTATGCAACG 57.338 40.909 3.16 0.00 42.74 4.10
3152 6705 5.565592 TGCAGTTTGGAAGCAATATACAG 57.434 39.130 0.00 0.00 34.97 2.74
3191 6744 4.764823 CACCATAACTTAGGAACAAAGGCA 59.235 41.667 0.00 0.00 0.00 4.75
3255 6808 6.383436 TGATGCAATGGGAAATTTCCTTATCA 59.617 34.615 31.23 24.92 46.72 2.15
3260 6813 4.533311 AGTTGATGCAATGGGAAATTTCCT 59.467 37.500 31.23 14.28 46.72 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.