Multiple sequence alignment - TraesCS7A01G557600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G557600 chr7A 100.000 6107 0 0 1 6107 730430753 730424647 0.000000e+00 11278.0
1 TraesCS7A01G557600 chr7A 91.432 887 30 11 3302 4151 730301114 730300237 0.000000e+00 1175.0
2 TraesCS7A01G557600 chr7A 94.369 515 29 0 1912 2426 730358444 730357930 0.000000e+00 791.0
3 TraesCS7A01G557600 chr7A 93.981 515 29 1 1912 2426 730311191 730310679 0.000000e+00 778.0
4 TraesCS7A01G557600 chr7A 96.543 405 14 0 2426 2830 730302334 730301930 0.000000e+00 671.0
5 TraesCS7A01G557600 chr7A 92.017 476 34 3 4156 4630 730298661 730298189 0.000000e+00 665.0
6 TraesCS7A01G557600 chr7A 96.632 386 13 0 2445 2830 730350289 730349904 5.160000e-180 641.0
7 TraesCS7A01G557600 chr7A 85.162 647 65 18 3253 3896 730290297 730289679 8.640000e-178 634.0
8 TraesCS7A01G557600 chr7A 89.910 446 45 0 2831 3276 730301553 730301108 5.310000e-160 575.0
9 TraesCS7A01G557600 chr7A 89.910 446 45 0 2831 3276 730349527 730349082 5.310000e-160 575.0
10 TraesCS7A01G557600 chr7A 93.017 358 16 2 5756 6107 730295258 730294904 1.170000e-141 514.0
11 TraesCS7A01G557600 chr7A 94.500 200 7 1 3302 3501 730349088 730348893 7.690000e-79 305.0
12 TraesCS7A01G557600 chr7A 93.023 43 1 1 4085 4127 730289656 730289616 1.840000e-05 62.1
13 TraesCS7A01G557600 chr7B 93.363 4068 192 35 1 4033 740037856 740033832 0.000000e+00 5945.0
14 TraesCS7A01G557600 chr7B 91.524 1227 80 15 4123 5338 740033727 740032514 0.000000e+00 1668.0
15 TraesCS7A01G557600 chr7B 87.061 456 31 6 5654 6107 740032486 740032057 1.980000e-134 490.0
16 TraesCS7A01G557600 chr7B 84.928 345 46 5 5041 5380 739998006 739997663 1.630000e-90 344.0
17 TraesCS7A01G557600 chr7B 90.521 211 20 0 3767 3977 739990323 739990113 4.660000e-71 279.0
18 TraesCS7A01G557600 chr7B 77.996 459 70 18 4555 4999 739999873 739999432 6.070000e-65 259.0
19 TraesCS7A01G557600 chr7D 93.300 3985 205 29 81 4027 635584105 635588065 0.000000e+00 5823.0
20 TraesCS7A01G557600 chr7D 94.466 1283 62 8 4120 5396 635588111 635589390 0.000000e+00 1967.0
21 TraesCS7A01G557600 chr7D 95.703 256 9 1 5852 6107 635589384 635589637 1.580000e-110 411.0
22 TraesCS7A01G557600 chr2B 83.051 3782 451 111 1206 4889 610416068 610419757 0.000000e+00 3258.0
23 TraesCS7A01G557600 chr2D 81.654 4197 521 146 1206 5285 518265535 518269599 0.000000e+00 3254.0
24 TraesCS7A01G557600 chr2D 77.742 310 49 10 3787 4086 621083747 621083448 8.140000e-39 172.0
25 TraesCS7A01G557600 chr2A 84.491 2895 330 71 1206 4033 662338724 662341566 0.000000e+00 2748.0
26 TraesCS7A01G557600 chr2A 81.120 768 101 22 4131 4889 662341710 662342442 5.310000e-160 575.0
27 TraesCS7A01G557600 chrUn 85.841 226 32 0 2190 2415 74820428 74820203 2.200000e-59 241.0
28 TraesCS7A01G557600 chr6B 77.570 428 70 19 2190 2594 716619275 716619699 1.020000e-57 235.0
29 TraesCS7A01G557600 chr4D 90.000 100 10 0 1498 1597 457948 457849 4.970000e-26 130.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G557600 chr7A 730424647 730430753 6106 True 11278.000000 11278 100.000000 1 6107 1 chr7A.!!$R3 6106
1 TraesCS7A01G557600 chr7A 730357930 730358444 514 True 791.000000 791 94.369000 1912 2426 1 chr7A.!!$R2 514
2 TraesCS7A01G557600 chr7A 730310679 730311191 512 True 778.000000 778 93.981000 1912 2426 1 chr7A.!!$R1 514
3 TraesCS7A01G557600 chr7A 730294904 730302334 7430 True 720.000000 1175 92.583800 2426 6107 5 chr7A.!!$R5 3681
4 TraesCS7A01G557600 chr7A 730348893 730350289 1396 True 507.000000 641 93.680667 2445 3501 3 chr7A.!!$R6 1056
5 TraesCS7A01G557600 chr7A 730289616 730290297 681 True 348.050000 634 89.092500 3253 4127 2 chr7A.!!$R4 874
6 TraesCS7A01G557600 chr7B 740032057 740037856 5799 True 2701.000000 5945 90.649333 1 6107 3 chr7B.!!$R3 6106
7 TraesCS7A01G557600 chr7B 739997663 739999873 2210 True 301.500000 344 81.462000 4555 5380 2 chr7B.!!$R2 825
8 TraesCS7A01G557600 chr7D 635584105 635589637 5532 False 2733.666667 5823 94.489667 81 6107 3 chr7D.!!$F1 6026
9 TraesCS7A01G557600 chr2B 610416068 610419757 3689 False 3258.000000 3258 83.051000 1206 4889 1 chr2B.!!$F1 3683
10 TraesCS7A01G557600 chr2D 518265535 518269599 4064 False 3254.000000 3254 81.654000 1206 5285 1 chr2D.!!$F1 4079
11 TraesCS7A01G557600 chr2A 662338724 662342442 3718 False 1661.500000 2748 82.805500 1206 4889 2 chr2A.!!$F1 3683

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
783 790 0.668535 GGCGTTGTGCTTTCTCCTTT 59.331 50.000 0.00 0.0 45.43 3.11 F
1011 1018 0.032813 CTCCCACCATGGCTTCCAAT 60.033 55.000 13.04 0.0 36.95 3.16 F
1089 1096 1.112113 GCCGGTACCAGATGAAGAGA 58.888 55.000 13.54 0.0 0.00 3.10 F
2619 2705 1.419012 TGATCCTAGCCATTCCTGCTG 59.581 52.381 0.00 0.0 39.91 4.41 F
4424 6605 0.397941 CCTTGCCTCTTGAGTGGTCA 59.602 55.000 1.53 0.0 0.00 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2653 2744 0.958091 TTGTTAGCTGCGGCACAATT 59.042 45.0 21.93 0.00 41.70 2.32 R
2704 2795 1.361668 CCGGTTCGAGCTCCACATTG 61.362 60.0 8.47 0.00 0.00 2.82 R
2803 2894 2.547299 ACGGGTAAATGTCAAACCGA 57.453 45.0 6.49 0.00 43.69 4.69 R
4432 6613 0.107017 CACCAGGTGGCATAGGAAGG 60.107 60.0 12.40 0.77 39.32 3.46 R
5578 10195 0.033090 AACTTCGACAACGTCCCCTC 59.967 55.0 0.00 0.00 40.69 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 59 5.812642 ACCAATACTCGATGTGTGATTCTTC 59.187 40.000 0.00 0.00 0.00 2.87
268 270 9.918630 CTGAAATTGGATACTCTCAATTTGTTT 57.081 29.630 15.71 0.00 46.88 2.83
294 296 2.885266 CCTTGAATGGAGATGGATGCTG 59.115 50.000 0.00 0.00 0.00 4.41
303 305 3.478509 GAGATGGATGCTGCAATCTCTT 58.521 45.455 25.00 3.58 33.67 2.85
430 433 5.319453 TCTTCATTTGATGCTCTGGAGTTT 58.681 37.500 0.00 0.00 0.00 2.66
492 495 5.586243 GTCTTTTGCTTCATATCAGGTAGCA 59.414 40.000 0.00 0.00 39.85 3.49
499 502 5.009410 GCTTCATATCAGGTAGCAAGCAATT 59.991 40.000 6.15 0.00 33.83 2.32
519 522 4.859304 TTTGCTGTGCATCTTCTGAAAT 57.141 36.364 0.00 0.00 38.76 2.17
562 565 5.367302 AGCTCCAAGAGAGAATATGCTTTC 58.633 41.667 0.00 0.00 46.50 2.62
607 610 2.026822 AGTTCTTGGCCTAGTGTGGATG 60.027 50.000 14.12 0.00 0.00 3.51
631 634 6.098409 TGTCCAATGGCAAAAAGTTTACCTAA 59.902 34.615 0.00 0.00 0.00 2.69
646 649 1.349688 ACCTAATGCCTCACGTTTGGA 59.650 47.619 7.69 0.00 41.21 3.53
708 715 7.039011 ACAAGTCATGAGGAATCTTACAGTGTA 60.039 37.037 0.00 0.00 0.00 2.90
742 749 1.269257 GCCTTTCTTGCCTTGTGTGTC 60.269 52.381 0.00 0.00 0.00 3.67
783 790 0.668535 GGCGTTGTGCTTTCTCCTTT 59.331 50.000 0.00 0.00 45.43 3.11
913 920 4.763793 CACCCAGACAATCACAATCTTCTT 59.236 41.667 0.00 0.00 0.00 2.52
914 921 5.939883 CACCCAGACAATCACAATCTTCTTA 59.060 40.000 0.00 0.00 0.00 2.10
924 931 6.500684 TCACAATCTTCTTAGCAACATTCC 57.499 37.500 0.00 0.00 0.00 3.01
928 935 6.128172 ACAATCTTCTTAGCAACATTCCTTCG 60.128 38.462 0.00 0.00 0.00 3.79
932 939 5.401531 TCTTAGCAACATTCCTTCGTAGT 57.598 39.130 0.00 0.00 0.00 2.73
933 940 5.790593 TCTTAGCAACATTCCTTCGTAGTT 58.209 37.500 0.00 0.00 0.00 2.24
944 951 3.070446 TCCTTCGTAGTTTTGCTTCTCCA 59.930 43.478 0.00 0.00 0.00 3.86
957 964 9.098355 GTTTTGCTTCTCCAAAAATAGTTCTTT 57.902 29.630 2.09 0.00 43.80 2.52
994 1001 5.112686 CAGTTTATCAAGCCTGGTAGTCTC 58.887 45.833 0.00 0.00 0.00 3.36
1005 1012 0.983378 GGTAGTCTCCCACCATGGCT 60.983 60.000 13.04 0.83 35.79 4.75
1011 1018 0.032813 CTCCCACCATGGCTTCCAAT 60.033 55.000 13.04 0.00 36.95 3.16
1089 1096 1.112113 GCCGGTACCAGATGAAGAGA 58.888 55.000 13.54 0.00 0.00 3.10
1107 1114 6.374417 AAGAGATGCTTCCAAAGGTACTAA 57.626 37.500 0.00 0.00 28.81 2.24
1110 1117 6.881602 AGAGATGCTTCCAAAGGTACTAAAAG 59.118 38.462 0.00 0.00 38.49 2.27
1111 1118 6.543735 AGATGCTTCCAAAGGTACTAAAAGT 58.456 36.000 0.00 0.00 38.49 2.66
1114 1150 8.700439 ATGCTTCCAAAGGTACTAAAAGTTAA 57.300 30.769 0.00 0.00 38.49 2.01
1117 1153 8.573885 GCTTCCAAAGGTACTAAAAGTTAATGT 58.426 33.333 0.00 0.00 38.49 2.71
1162 1199 4.081406 TCAAGAAATATTGCTGCTGTGGT 58.919 39.130 0.00 0.00 0.00 4.16
1163 1200 4.156556 TCAAGAAATATTGCTGCTGTGGTC 59.843 41.667 0.00 0.00 0.00 4.02
1333 1371 6.157904 TCTCGGTTACATTATTTGTTCGACA 58.842 36.000 0.00 0.00 39.87 4.35
1358 1405 6.496911 ACAGGTTATTTTGCTTTACATTCCCT 59.503 34.615 0.00 0.00 0.00 4.20
1359 1406 6.813152 CAGGTTATTTTGCTTTACATTCCCTG 59.187 38.462 0.00 0.00 0.00 4.45
1385 1435 2.613133 CCTTCTGCAGCTAGAATCAAGC 59.387 50.000 9.47 0.00 36.21 4.01
1436 1502 3.766545 TCCTTTATGTTTGCAGGAAGCT 58.233 40.909 0.00 0.00 45.94 3.74
1836 1906 5.874895 TCATGTCTTCAAAGCTGAATGAG 57.125 39.130 0.00 0.00 40.78 2.90
1945 2015 7.066887 TCACAGAGACTATCAGAAGATCAGAAC 59.933 40.741 0.00 0.00 35.67 3.01
1949 2019 9.866655 AGAGACTATCAGAAGATCAGAACTAAT 57.133 33.333 0.00 0.00 35.67 1.73
2346 2420 5.995282 GTCCCATCCATATTTAACATCGTCA 59.005 40.000 0.00 0.00 0.00 4.35
2430 2504 6.980978 CGGTCAGGTATGGATATTATTAGCAG 59.019 42.308 0.00 0.00 0.00 4.24
2460 2537 5.541868 AGGACATAATACTCTGATCAGGGTG 59.458 44.000 34.00 20.89 43.16 4.61
2484 2561 3.991773 CACATTCTGAAGGCATGGTTTTG 59.008 43.478 1.41 0.00 0.00 2.44
2619 2705 1.419012 TGATCCTAGCCATTCCTGCTG 59.581 52.381 0.00 0.00 39.91 4.41
2623 2709 1.486310 CCTAGCCATTCCTGCTGTGTA 59.514 52.381 0.00 0.00 39.91 2.90
2653 2744 6.049955 AGAACTGCTAAACTAATGGCTACA 57.950 37.500 0.00 0.00 0.00 2.74
2803 2894 2.697147 ATTTGCGCCAGTGGGTGTCT 62.697 55.000 12.15 0.00 46.76 3.41
2872 3339 8.822652 GCCAGCTGCAAATTATTAATTATCTT 57.177 30.769 8.66 0.00 40.77 2.40
2896 3371 6.816136 TCACTCTTGTGTCAGTGATCTTTAA 58.184 36.000 0.00 0.00 43.31 1.52
2938 3413 1.830279 TTCAGGATGCTTCTGCCAAG 58.170 50.000 0.00 0.00 38.71 3.61
3001 3476 0.961019 ACTACACCGACGGCAACTTA 59.039 50.000 15.39 0.00 0.00 2.24
3031 3506 2.093973 CCTCATGTCGAGCAAACTAGGT 60.094 50.000 0.00 0.00 40.78 3.08
3043 3518 3.493699 GCAAACTAGGTGTCACACAGGTA 60.494 47.826 10.85 0.00 35.86 3.08
3053 3528 4.578928 GTGTCACACAGGTAGGAAAATGTT 59.421 41.667 2.00 0.00 34.08 2.71
3055 3530 5.067153 TGTCACACAGGTAGGAAAATGTTTG 59.933 40.000 0.00 0.00 0.00 2.93
3062 3538 7.596248 CACAGGTAGGAAAATGTTTGATCAAAG 59.404 37.037 21.05 6.90 0.00 2.77
3126 3602 2.378547 TGGCATCCCTAAGTGGTCTTTT 59.621 45.455 0.00 0.00 35.36 2.27
3258 3734 5.106948 CGATATGATTGCCATGAACACTACC 60.107 44.000 0.00 0.00 36.71 3.18
3342 3821 4.883083 TGTAACTTCAGTGCTCTAACAGG 58.117 43.478 0.00 0.00 0.00 4.00
3343 3822 2.464157 ACTTCAGTGCTCTAACAGGC 57.536 50.000 0.00 0.00 0.00 4.85
3344 3823 1.694150 ACTTCAGTGCTCTAACAGGCA 59.306 47.619 0.00 0.00 36.01 4.75
3345 3824 2.289320 ACTTCAGTGCTCTAACAGGCAG 60.289 50.000 0.00 0.00 39.22 4.85
3352 3831 1.364626 CTCTAACAGGCAGCGCTTGG 61.365 60.000 7.50 0.00 40.00 3.61
3575 4056 2.925724 CTGACAGGTTTACACCCACAA 58.074 47.619 0.00 0.00 45.63 3.33
3655 4144 5.335661 CCCTTAGGAACACACATACTTTTGC 60.336 44.000 0.00 0.00 33.47 3.68
3677 4166 5.474532 TGCTTGATCAGACAAAGTTGCTAAT 59.525 36.000 0.00 0.00 0.00 1.73
3683 4172 5.280945 TCAGACAAAGTTGCTAATTGTTGC 58.719 37.500 2.96 0.00 37.41 4.17
3902 4428 4.134379 AGACGAGATCAACAAGATGCAT 57.866 40.909 0.00 0.00 37.00 3.96
4208 6376 1.903404 CTGCGGGCTTCCAACCTTT 60.903 57.895 0.00 0.00 0.00 3.11
4399 6567 1.457823 TACGAATGGTAGGCGCCGAT 61.458 55.000 23.20 7.21 0.00 4.18
4407 6575 1.152610 TAGGCGCCGATCCTTACCT 60.153 57.895 23.20 0.95 35.21 3.08
4414 6582 1.123928 CCGATCCTTACCTTGCCTCT 58.876 55.000 0.00 0.00 0.00 3.69
4424 6605 0.397941 CCTTGCCTCTTGAGTGGTCA 59.602 55.000 1.53 0.00 0.00 4.02
4425 6606 1.202806 CCTTGCCTCTTGAGTGGTCAA 60.203 52.381 1.53 5.35 40.55 3.18
4426 6607 1.876156 CTTGCCTCTTGAGTGGTCAAC 59.124 52.381 1.53 0.00 37.79 3.18
4427 6608 0.836606 TGCCTCTTGAGTGGTCAACA 59.163 50.000 1.53 0.00 37.79 3.33
4439 6620 2.943036 GGTCAACACCAACCTTCCTA 57.057 50.000 0.00 0.00 43.17 2.94
4473 6654 4.024725 TGTGAAAATGTAACCGTGTGCTAC 60.025 41.667 0.00 0.00 0.00 3.58
4486 6670 1.003464 TGTGCTACACATGATGGCAGT 59.997 47.619 11.75 0.00 39.62 4.40
4597 6781 1.191535 AACAGCGGTACCTGCAGATA 58.808 50.000 24.11 0.00 36.29 1.98
4662 6933 3.809832 GCGGTGCATCTTCAGTACATAAT 59.190 43.478 0.00 0.00 0.00 1.28
4668 6939 8.673711 GGTGCATCTTCAGTACATAATTAAACA 58.326 33.333 0.00 0.00 0.00 2.83
4849 8045 1.970917 GCAAGTGTGCGCGCTCTTAT 61.971 55.000 30.79 15.31 41.93 1.73
4867 8063 8.873830 CGCTCTTATGAAATTTACTCAAGAGAA 58.126 33.333 22.75 0.00 32.81 2.87
4968 8178 1.823976 GGAACCGGATCCAGAGGTC 59.176 63.158 24.93 7.73 39.42 3.85
4984 8198 2.557490 GAGGTCAGTGTTCGGTTCTACT 59.443 50.000 0.00 0.00 0.00 2.57
5108 9710 1.343510 CGGCGCGCAAACAAATGATT 61.344 50.000 34.42 0.00 0.00 2.57
5115 9717 4.381270 CGCGCAAACAAATGATTAGAACAA 59.619 37.500 8.75 0.00 0.00 2.83
5134 9736 7.559486 AGAACAACTACATGATGAGCTATGAA 58.441 34.615 0.00 0.00 0.00 2.57
5392 10009 4.085357 TCAGCACACCAACTTACAGAAT 57.915 40.909 0.00 0.00 0.00 2.40
5393 10010 5.222079 TCAGCACACCAACTTACAGAATA 57.778 39.130 0.00 0.00 0.00 1.75
5394 10011 5.804639 TCAGCACACCAACTTACAGAATAT 58.195 37.500 0.00 0.00 0.00 1.28
5395 10012 5.643348 TCAGCACACCAACTTACAGAATATG 59.357 40.000 0.00 0.00 0.00 1.78
5396 10013 5.643348 CAGCACACCAACTTACAGAATATGA 59.357 40.000 0.00 0.00 0.00 2.15
5397 10014 6.149308 CAGCACACCAACTTACAGAATATGAA 59.851 38.462 0.00 0.00 0.00 2.57
5398 10015 6.372659 AGCACACCAACTTACAGAATATGAAG 59.627 38.462 0.00 0.00 0.00 3.02
5399 10016 6.371548 GCACACCAACTTACAGAATATGAAGA 59.628 38.462 0.00 0.00 0.00 2.87
5400 10017 7.066284 GCACACCAACTTACAGAATATGAAGAT 59.934 37.037 0.00 0.00 0.00 2.40
5401 10018 9.599866 CACACCAACTTACAGAATATGAAGATA 57.400 33.333 0.00 0.00 0.00 1.98
5411 10028 8.618702 ACAGAATATGAAGATAATTGCTCCTG 57.381 34.615 0.00 0.00 0.00 3.86
5412 10029 8.435187 ACAGAATATGAAGATAATTGCTCCTGA 58.565 33.333 0.00 0.00 0.00 3.86
5413 10030 9.281371 CAGAATATGAAGATAATTGCTCCTGAA 57.719 33.333 0.00 0.00 0.00 3.02
5414 10031 9.857656 AGAATATGAAGATAATTGCTCCTGAAA 57.142 29.630 0.00 0.00 0.00 2.69
5415 10032 9.890352 GAATATGAAGATAATTGCTCCTGAAAC 57.110 33.333 0.00 0.00 0.00 2.78
5416 10033 8.985315 ATATGAAGATAATTGCTCCTGAAACA 57.015 30.769 0.00 0.00 0.00 2.83
5417 10034 7.893124 ATGAAGATAATTGCTCCTGAAACAT 57.107 32.000 0.00 0.00 0.00 2.71
5418 10035 7.707624 TGAAGATAATTGCTCCTGAAACATT 57.292 32.000 0.00 0.00 0.00 2.71
5419 10036 8.125978 TGAAGATAATTGCTCCTGAAACATTT 57.874 30.769 0.00 0.00 0.00 2.32
5420 10037 8.246180 TGAAGATAATTGCTCCTGAAACATTTC 58.754 33.333 0.00 0.00 37.69 2.17
5421 10038 7.951347 AGATAATTGCTCCTGAAACATTTCT 57.049 32.000 5.97 0.00 38.02 2.52
5422 10039 9.466497 AAGATAATTGCTCCTGAAACATTTCTA 57.534 29.630 5.97 0.00 38.02 2.10
5423 10040 9.466497 AGATAATTGCTCCTGAAACATTTCTAA 57.534 29.630 5.97 0.00 38.02 2.10
5424 10041 9.508567 GATAATTGCTCCTGAAACATTTCTAAC 57.491 33.333 5.97 0.00 38.02 2.34
5425 10042 5.705609 TTGCTCCTGAAACATTTCTAACC 57.294 39.130 5.97 0.00 38.02 2.85
5426 10043 4.724399 TGCTCCTGAAACATTTCTAACCA 58.276 39.130 5.97 0.00 38.02 3.67
5427 10044 5.324409 TGCTCCTGAAACATTTCTAACCAT 58.676 37.500 5.97 0.00 38.02 3.55
5428 10045 5.774690 TGCTCCTGAAACATTTCTAACCATT 59.225 36.000 5.97 0.00 38.02 3.16
5429 10046 6.095377 GCTCCTGAAACATTTCTAACCATTG 58.905 40.000 5.97 0.00 38.02 2.82
5430 10047 6.071952 GCTCCTGAAACATTTCTAACCATTGA 60.072 38.462 5.97 0.00 38.02 2.57
5431 10048 7.523709 GCTCCTGAAACATTTCTAACCATTGAA 60.524 37.037 5.97 0.00 38.02 2.69
5432 10049 8.243961 TCCTGAAACATTTCTAACCATTGAAA 57.756 30.769 5.97 0.00 38.02 2.69
5433 10050 8.700051 TCCTGAAACATTTCTAACCATTGAAAA 58.300 29.630 5.97 0.00 38.02 2.29
5434 10051 8.981647 CCTGAAACATTTCTAACCATTGAAAAG 58.018 33.333 5.97 0.00 38.02 2.27
5435 10052 9.533253 CTGAAACATTTCTAACCATTGAAAAGT 57.467 29.630 5.97 0.00 36.21 2.66
5436 10053 9.311916 TGAAACATTTCTAACCATTGAAAAGTG 57.688 29.630 5.97 0.00 35.31 3.16
5437 10054 8.661352 AAACATTTCTAACCATTGAAAAGTGG 57.339 30.769 0.00 0.00 41.35 4.00
5438 10055 6.758254 ACATTTCTAACCATTGAAAAGTGGG 58.242 36.000 0.00 0.00 39.86 4.61
5439 10056 6.326323 ACATTTCTAACCATTGAAAAGTGGGT 59.674 34.615 0.00 0.00 39.86 4.51
5440 10057 7.507616 ACATTTCTAACCATTGAAAAGTGGGTA 59.492 33.333 0.00 0.00 39.86 3.69
5441 10058 7.899648 TTTCTAACCATTGAAAAGTGGGTAA 57.100 32.000 0.00 0.00 37.23 2.85
5442 10059 8.485578 TTTCTAACCATTGAAAAGTGGGTAAT 57.514 30.769 0.00 0.00 37.23 1.89
5443 10060 8.485578 TTCTAACCATTGAAAAGTGGGTAATT 57.514 30.769 0.00 0.00 37.23 1.40
5444 10061 9.589461 TTCTAACCATTGAAAAGTGGGTAATTA 57.411 29.630 0.00 0.00 37.23 1.40
5445 10062 9.589461 TCTAACCATTGAAAAGTGGGTAATTAA 57.411 29.630 0.00 0.00 37.23 1.40
5448 10065 9.500785 AACCATTGAAAAGTGGGTAATTAATTG 57.499 29.630 11.05 0.00 39.86 2.32
5449 10066 8.655901 ACCATTGAAAAGTGGGTAATTAATTGT 58.344 29.630 11.05 0.00 39.86 2.71
5450 10067 8.934825 CCATTGAAAAGTGGGTAATTAATTGTG 58.065 33.333 11.05 0.00 0.00 3.33
5451 10068 9.703892 CATTGAAAAGTGGGTAATTAATTGTGA 57.296 29.630 11.05 0.00 0.00 3.58
5454 10071 9.535878 TGAAAAGTGGGTAATTAATTGTGAAAC 57.464 29.630 11.05 0.47 37.35 2.78
5473 10090 9.950680 TGTGAAACATTTCTAAGCTTAAAGAAG 57.049 29.630 7.74 2.70 45.67 2.85
5474 10091 9.952188 GTGAAACATTTCTAAGCTTAAAGAAGT 57.048 29.630 7.74 4.52 38.02 3.01
5475 10092 9.950680 TGAAACATTTCTAAGCTTAAAGAAGTG 57.049 29.630 22.95 22.95 42.16 3.16
5476 10093 9.399403 GAAACATTTCTAAGCTTAAAGAAGTGG 57.601 33.333 25.85 16.00 41.30 4.00
5477 10094 8.691661 AACATTTCTAAGCTTAAAGAAGTGGA 57.308 30.769 25.85 10.22 41.30 4.02
5478 10095 8.691661 ACATTTCTAAGCTTAAAGAAGTGGAA 57.308 30.769 25.85 14.32 41.30 3.53
5479 10096 9.131791 ACATTTCTAAGCTTAAAGAAGTGGAAA 57.868 29.630 25.85 19.74 41.30 3.13
5480 10097 9.399403 CATTTCTAAGCTTAAAGAAGTGGAAAC 57.601 33.333 19.40 0.00 36.40 2.78
5481 10098 8.514330 TTTCTAAGCTTAAAGAAGTGGAAACA 57.486 30.769 7.74 0.00 33.49 2.83
5482 10099 8.514330 TTCTAAGCTTAAAGAAGTGGAAACAA 57.486 30.769 7.74 0.00 46.06 2.83
5483 10100 8.691661 TCTAAGCTTAAAGAAGTGGAAACAAT 57.308 30.769 7.74 0.00 46.06 2.71
5493 10110 3.934068 AGTGGAAACAATTATCGACCGT 58.066 40.909 0.00 0.00 46.06 4.83
5494 10111 3.682858 AGTGGAAACAATTATCGACCGTG 59.317 43.478 0.00 0.00 46.06 4.94
5495 10112 2.417239 TGGAAACAATTATCGACCGTGC 59.583 45.455 0.00 0.00 37.44 5.34
5496 10113 2.536130 GGAAACAATTATCGACCGTGCG 60.536 50.000 0.00 0.00 0.00 5.34
5497 10114 0.372334 AACAATTATCGACCGTGCGC 59.628 50.000 0.00 0.00 0.00 6.09
5498 10115 1.275657 CAATTATCGACCGTGCGCC 59.724 57.895 4.18 0.00 0.00 6.53
5499 10116 1.885850 AATTATCGACCGTGCGCCC 60.886 57.895 4.18 0.00 0.00 6.13
5500 10117 3.802418 ATTATCGACCGTGCGCCCC 62.802 63.158 4.18 0.00 0.00 5.80
5513 10130 3.606886 CGCCCCACGCTAAGATATT 57.393 52.632 0.00 0.00 34.21 1.28
5514 10131 1.429463 CGCCCCACGCTAAGATATTC 58.571 55.000 0.00 0.00 34.21 1.75
5515 10132 1.270094 CGCCCCACGCTAAGATATTCA 60.270 52.381 0.00 0.00 34.21 2.57
5516 10133 2.417719 GCCCCACGCTAAGATATTCAG 58.582 52.381 0.00 0.00 0.00 3.02
5517 10134 2.872038 GCCCCACGCTAAGATATTCAGG 60.872 54.545 0.00 0.00 0.00 3.86
5518 10135 2.289694 CCCCACGCTAAGATATTCAGGG 60.290 54.545 0.00 0.00 0.00 4.45
5519 10136 2.368875 CCCACGCTAAGATATTCAGGGT 59.631 50.000 0.00 0.00 36.04 4.34
5520 10137 3.393800 CCACGCTAAGATATTCAGGGTG 58.606 50.000 16.12 16.12 46.83 4.61
5521 10138 3.393800 CACGCTAAGATATTCAGGGTGG 58.606 50.000 15.63 4.39 44.81 4.61
5522 10139 3.039011 ACGCTAAGATATTCAGGGTGGT 58.961 45.455 0.00 0.00 34.55 4.16
5523 10140 3.454812 ACGCTAAGATATTCAGGGTGGTT 59.545 43.478 0.00 0.00 34.55 3.67
5524 10141 4.080526 ACGCTAAGATATTCAGGGTGGTTT 60.081 41.667 0.00 0.00 34.55 3.27
5525 10142 4.511826 CGCTAAGATATTCAGGGTGGTTTC 59.488 45.833 0.00 0.00 0.00 2.78
5526 10143 5.685075 CGCTAAGATATTCAGGGTGGTTTCT 60.685 44.000 0.00 0.00 0.00 2.52
5527 10144 5.760743 GCTAAGATATTCAGGGTGGTTTCTC 59.239 44.000 0.00 0.00 0.00 2.87
5528 10145 4.779993 AGATATTCAGGGTGGTTTCTCC 57.220 45.455 0.00 0.00 0.00 3.71
5536 10153 1.560146 GGGTGGTTTCTCCCTCTTAGG 59.440 57.143 0.00 0.00 42.07 2.69
5542 10159 0.902531 TTCTCCCTCTTAGGTTGCCG 59.097 55.000 0.00 0.00 31.93 5.69
5543 10160 0.252103 TCTCCCTCTTAGGTTGCCGT 60.252 55.000 0.00 0.00 31.93 5.68
5546 10163 0.541863 CCCTCTTAGGTTGCCGTCAT 59.458 55.000 0.00 0.00 31.93 3.06
5549 10166 3.393800 CCTCTTAGGTTGCCGTCATATG 58.606 50.000 0.00 0.00 0.00 1.78
5551 10168 4.442706 CTCTTAGGTTGCCGTCATATGTT 58.557 43.478 1.90 0.00 0.00 2.71
5552 10169 4.188462 TCTTAGGTTGCCGTCATATGTTG 58.812 43.478 1.90 0.00 0.00 3.33
5555 10172 1.459450 GTTGCCGTCATATGTTGGGT 58.541 50.000 14.86 0.00 0.00 4.51
5558 10175 2.520069 TGCCGTCATATGTTGGGTTTT 58.480 42.857 14.86 0.00 0.00 2.43
5559 10176 3.687125 TGCCGTCATATGTTGGGTTTTA 58.313 40.909 14.86 0.00 0.00 1.52
5560 10177 3.440872 TGCCGTCATATGTTGGGTTTTAC 59.559 43.478 14.86 0.00 0.00 2.01
5561 10178 3.692593 GCCGTCATATGTTGGGTTTTACT 59.307 43.478 14.86 0.00 0.00 2.24
5563 10180 5.529800 GCCGTCATATGTTGGGTTTTACTAT 59.470 40.000 14.86 0.00 0.00 2.12
5564 10181 6.038936 GCCGTCATATGTTGGGTTTTACTATT 59.961 38.462 14.86 0.00 0.00 1.73
5565 10182 7.227116 GCCGTCATATGTTGGGTTTTACTATTA 59.773 37.037 14.86 0.00 0.00 0.98
5566 10183 8.770828 CCGTCATATGTTGGGTTTTACTATTAG 58.229 37.037 1.90 0.00 0.00 1.73
5567 10184 9.537192 CGTCATATGTTGGGTTTTACTATTAGA 57.463 33.333 1.90 0.00 0.00 2.10
5569 10186 9.555727 TCATATGTTGGGTTTTACTATTAGAGC 57.444 33.333 1.90 0.00 0.00 4.09
5570 10187 8.784043 CATATGTTGGGTTTTACTATTAGAGCC 58.216 37.037 0.00 0.00 0.00 4.70
5571 10188 5.180271 TGTTGGGTTTTACTATTAGAGCCG 58.820 41.667 0.00 0.00 0.00 5.52
5572 10189 5.046448 TGTTGGGTTTTACTATTAGAGCCGA 60.046 40.000 0.00 0.00 0.00 5.54
5573 10190 5.881923 TGGGTTTTACTATTAGAGCCGAT 57.118 39.130 0.00 0.00 0.00 4.18
5574 10191 5.607477 TGGGTTTTACTATTAGAGCCGATG 58.393 41.667 0.00 0.00 0.00 3.84
5575 10192 4.995487 GGGTTTTACTATTAGAGCCGATGG 59.005 45.833 0.00 0.00 0.00 3.51
5576 10193 5.221581 GGGTTTTACTATTAGAGCCGATGGA 60.222 44.000 0.00 0.00 0.00 3.41
5578 10195 5.723672 TTTACTATTAGAGCCGATGGAGG 57.276 43.478 0.00 0.00 0.00 4.30
5579 10196 3.527507 ACTATTAGAGCCGATGGAGGA 57.472 47.619 0.00 0.00 0.00 3.71
5580 10197 3.426615 ACTATTAGAGCCGATGGAGGAG 58.573 50.000 0.00 0.00 0.00 3.69
5581 10198 1.638529 ATTAGAGCCGATGGAGGAGG 58.361 55.000 0.00 0.00 0.00 4.30
5583 10200 2.373338 TAGAGCCGATGGAGGAGGGG 62.373 65.000 0.00 0.00 0.00 4.79
5584 10201 3.758133 GAGCCGATGGAGGAGGGGA 62.758 68.421 0.00 0.00 0.00 4.81
5585 10202 3.551407 GCCGATGGAGGAGGGGAC 61.551 72.222 0.00 0.00 0.00 4.46
5587 10204 2.442272 CGATGGAGGAGGGGACGT 60.442 66.667 0.00 0.00 0.00 4.34
5588 10205 2.058595 CGATGGAGGAGGGGACGTT 61.059 63.158 0.00 0.00 0.00 3.99
5590 10207 1.229529 ATGGAGGAGGGGACGTTGT 60.230 57.895 0.00 0.00 0.00 3.32
5592 10209 2.572284 GAGGAGGGGACGTTGTCG 59.428 66.667 0.00 0.00 43.34 4.35
5594 10211 1.530013 GAGGAGGGGACGTTGTCGAA 61.530 60.000 0.00 0.00 40.62 3.71
5595 10212 1.080025 GGAGGGGACGTTGTCGAAG 60.080 63.158 0.00 0.00 40.62 3.79
5596 10213 1.664306 GAGGGGACGTTGTCGAAGT 59.336 57.895 0.00 0.00 40.62 3.01
5599 10216 1.568025 GGGACGTTGTCGAAGTTGC 59.432 57.895 0.00 0.00 40.62 4.17
5600 10217 0.878961 GGGACGTTGTCGAAGTTGCT 60.879 55.000 0.00 0.00 40.62 3.91
5601 10218 0.935196 GGACGTTGTCGAAGTTGCTT 59.065 50.000 0.00 0.00 40.62 3.91
5602 10219 1.070776 GGACGTTGTCGAAGTTGCTTC 60.071 52.381 0.00 0.00 40.62 3.86
5614 10231 5.076911 GAAGTTGCTTCGATGAGATTAGC 57.923 43.478 1.89 0.00 34.21 3.09
5620 10515 5.473931 TGCTTCGATGAGATTAGCTAATCC 58.526 41.667 33.13 25.91 42.29 3.01
5621 10516 5.011023 TGCTTCGATGAGATTAGCTAATCCA 59.989 40.000 33.13 29.30 42.29 3.41
5638 10533 2.314071 CCATCCATGGTGGGCATAAT 57.686 50.000 19.97 0.00 43.05 1.28
5644 10539 0.484212 ATGGTGGGCATAATCTGGGG 59.516 55.000 0.00 0.00 0.00 4.96
5645 10540 1.531602 GGTGGGCATAATCTGGGGC 60.532 63.158 0.00 0.00 0.00 5.80
5646 10541 1.538666 GTGGGCATAATCTGGGGCT 59.461 57.895 0.00 0.00 0.00 5.19
5647 10542 0.771127 GTGGGCATAATCTGGGGCTA 59.229 55.000 0.00 0.00 0.00 3.93
5648 10543 0.771127 TGGGCATAATCTGGGGCTAC 59.229 55.000 0.00 0.00 0.00 3.58
5649 10544 0.038310 GGGCATAATCTGGGGCTACC 59.962 60.000 0.00 0.00 40.81 3.18
5650 10545 0.321653 GGCATAATCTGGGGCTACCG 60.322 60.000 0.00 0.00 44.64 4.02
5651 10546 0.685097 GCATAATCTGGGGCTACCGA 59.315 55.000 0.00 0.00 44.64 4.69
5652 10547 1.279271 GCATAATCTGGGGCTACCGAT 59.721 52.381 0.00 0.00 44.64 4.18
5673 10576 2.680339 TGCCGAATTTGCGTTGATCATA 59.320 40.909 0.00 0.00 0.00 2.15
5680 10584 3.454042 TTGCGTTGATCATATATGCGC 57.546 42.857 20.77 20.77 43.07 6.09
5688 10592 6.489675 GTTGATCATATATGCGCATAAAGGG 58.510 40.000 32.02 20.95 0.00 3.95
5698 10602 2.548480 GCGCATAAAGGGTGAATAGACC 59.452 50.000 0.30 0.00 34.96 3.85
5702 10606 6.173339 CGCATAAAGGGTGAATAGACCATAT 58.827 40.000 0.00 0.00 37.80 1.78
5708 10612 5.738401 AGGGTGAATAGACCATATAAGGGT 58.262 41.667 0.00 0.00 42.61 4.34
5735 10639 7.438459 CCCGTTAATAAACTTAGGTGAGATCAG 59.562 40.741 0.00 0.00 33.15 2.90
5750 10654 3.643763 AGATCAGTTTGACACGAGACAC 58.356 45.455 0.00 0.00 0.00 3.67
5759 10663 4.233123 TGACACGAGACACGATTTACTT 57.767 40.909 0.00 0.00 45.77 2.24
5763 10667 4.217118 ACACGAGACACGATTTACTTAGGT 59.783 41.667 0.00 0.00 45.77 3.08
5769 11370 4.766375 ACACGATTTACTTAGGTCCATGG 58.234 43.478 4.97 4.97 0.00 3.66
5783 11384 4.827087 ATGGCCGCGAGCTGAGTG 62.827 66.667 8.23 0.00 43.05 3.51
5785 11386 4.521062 GGCCGCGAGCTGAGTGAT 62.521 66.667 8.23 0.00 43.05 3.06
5809 11410 6.482898 AGCTATATGTCATCCCTCATGATC 57.517 41.667 0.00 0.00 43.72 2.92
5810 11411 6.203813 AGCTATATGTCATCCCTCATGATCT 58.796 40.000 0.00 0.00 43.72 2.75
5833 11458 8.359875 TCTTCTTATATTCCCTCTAGCAGATG 57.640 38.462 0.00 0.00 0.00 2.90
5834 11459 7.398618 TCTTCTTATATTCCCTCTAGCAGATGG 59.601 40.741 0.00 0.00 32.09 3.51
5835 11460 6.805150 TCTTATATTCCCTCTAGCAGATGGA 58.195 40.000 6.22 6.22 37.27 3.41
5836 11461 6.665680 TCTTATATTCCCTCTAGCAGATGGAC 59.334 42.308 8.82 0.00 38.50 4.02
5837 11462 1.794714 TTCCCTCTAGCAGATGGACC 58.205 55.000 8.82 0.00 38.50 4.46
5838 11463 0.636647 TCCCTCTAGCAGATGGACCA 59.363 55.000 0.00 0.00 34.67 4.02
5839 11464 1.008327 TCCCTCTAGCAGATGGACCAA 59.992 52.381 0.00 0.00 34.67 3.67
5840 11465 1.139853 CCCTCTAGCAGATGGACCAAC 59.860 57.143 0.00 0.00 32.48 3.77
5841 11466 2.114616 CCTCTAGCAGATGGACCAACT 58.885 52.381 0.00 0.00 0.00 3.16
5842 11467 3.300388 CCTCTAGCAGATGGACCAACTA 58.700 50.000 3.60 0.93 0.00 2.24
5843 11468 3.706594 CCTCTAGCAGATGGACCAACTAA 59.293 47.826 3.60 0.00 0.00 2.24
5844 11469 4.346418 CCTCTAGCAGATGGACCAACTAAT 59.654 45.833 3.60 0.00 0.00 1.73
5845 11470 5.510520 CCTCTAGCAGATGGACCAACTAATC 60.511 48.000 3.60 0.00 0.00 1.75
5846 11471 5.211973 TCTAGCAGATGGACCAACTAATCT 58.788 41.667 3.60 5.05 0.00 2.40
5847 11472 4.851639 AGCAGATGGACCAACTAATCTT 57.148 40.909 3.60 0.00 0.00 2.40
5848 11473 4.521146 AGCAGATGGACCAACTAATCTTG 58.479 43.478 3.60 0.00 0.00 3.02
5849 11474 3.629398 GCAGATGGACCAACTAATCTTGG 59.371 47.826 3.60 0.00 45.62 3.61
5850 11475 3.629398 CAGATGGACCAACTAATCTTGGC 59.371 47.826 3.60 0.00 44.19 4.52
6030 11657 0.511221 CCGTTCATTTCTCGTTGCGT 59.489 50.000 0.00 0.00 0.00 5.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 59 0.955919 GCCAGAACCAGGAAACGGAG 60.956 60.000 0.00 0.00 0.00 4.63
268 270 6.044754 AGCATCCATCTCCATTCAAGGTATTA 59.955 38.462 0.00 0.00 0.00 0.98
294 296 5.684626 CAGAACACAAACTTCAAGAGATTGC 59.315 40.000 0.00 0.00 40.66 3.56
430 433 5.178096 TGCAATCTCAATACCAGAAAGGA 57.822 39.130 0.00 0.00 41.22 3.36
499 502 4.859304 AATTTCAGAAGATGCACAGCAA 57.141 36.364 0.00 0.00 43.62 3.91
562 565 5.381174 TCAGAAGATCACAAAAGGCAATG 57.619 39.130 0.00 0.00 0.00 2.82
607 610 4.956085 AGGTAAACTTTTTGCCATTGGAC 58.044 39.130 6.95 0.00 0.00 4.02
631 634 1.271325 TGACATCCAAACGTGAGGCAT 60.271 47.619 0.00 0.00 0.00 4.40
646 649 2.224113 CCTTTGCCAGCAGTTTTGACAT 60.224 45.455 0.00 0.00 0.00 3.06
708 715 3.290710 AGAAAGGCGGCATTACATCATT 58.709 40.909 13.08 0.00 0.00 2.57
742 749 5.189180 CCTGGGAGAAGTTATTCCAAAGAG 58.811 45.833 0.00 0.00 35.94 2.85
783 790 4.741837 GCAAGGTAGATGATGCTAAGCTGA 60.742 45.833 0.00 0.00 35.93 4.26
913 920 5.334569 GCAAAACTACGAAGGAATGTTGCTA 60.335 40.000 0.00 0.00 36.71 3.49
914 921 4.556699 GCAAAACTACGAAGGAATGTTGCT 60.557 41.667 0.00 0.00 36.71 3.91
924 931 5.418310 TTTGGAGAAGCAAAACTACGAAG 57.582 39.130 0.00 0.00 0.00 3.79
928 935 9.181805 GAACTATTTTTGGAGAAGCAAAACTAC 57.818 33.333 0.00 0.00 31.06 2.73
932 939 9.097257 CAAAGAACTATTTTTGGAGAAGCAAAA 57.903 29.630 0.00 0.00 32.13 2.44
933 940 8.474025 TCAAAGAACTATTTTTGGAGAAGCAAA 58.526 29.630 0.00 0.00 35.52 3.68
944 951 8.797438 GGTGGAGAAGATCAAAGAACTATTTTT 58.203 33.333 0.00 0.00 0.00 1.94
957 964 4.782691 TGATAAACTGGGTGGAGAAGATCA 59.217 41.667 0.00 0.00 0.00 2.92
994 1001 0.032813 AGATTGGAAGCCATGGTGGG 60.033 55.000 14.67 0.00 38.19 4.61
1005 1012 4.897509 TCTCTTGAAGCTGAGATTGGAA 57.102 40.909 0.00 0.00 34.77 3.53
1011 1018 3.580022 TGTCCATTCTCTTGAAGCTGAGA 59.420 43.478 0.00 0.00 37.53 3.27
1089 1096 8.700439 TTAACTTTTAGTACCTTTGGAAGCAT 57.300 30.769 0.00 0.00 0.00 3.79
1104 1111 9.906660 TGCCATAAAGAACACATTAACTTTTAG 57.093 29.630 0.00 0.00 34.93 1.85
1107 1114 7.331687 GCATGCCATAAAGAACACATTAACTTT 59.668 33.333 6.36 0.00 36.68 2.66
1110 1117 6.098679 TGCATGCCATAAAGAACACATTAAC 58.901 36.000 16.68 0.00 0.00 2.01
1111 1118 6.278172 TGCATGCCATAAAGAACACATTAA 57.722 33.333 16.68 0.00 0.00 1.40
1114 1150 5.113383 CAATGCATGCCATAAAGAACACAT 58.887 37.500 16.68 0.00 32.67 3.21
1333 1371 6.496911 AGGGAATGTAAAGCAAAATAACCTGT 59.503 34.615 0.00 0.00 0.00 4.00
1358 1405 2.470990 TCTAGCTGCAGAAGGGAATCA 58.529 47.619 20.43 0.00 0.00 2.57
1359 1406 3.550437 TTCTAGCTGCAGAAGGGAATC 57.450 47.619 20.43 0.00 31.01 2.52
1385 1435 5.287674 TCTGATAAGCTCCTTCCATCAAG 57.712 43.478 0.00 0.00 0.00 3.02
1836 1906 1.135170 GGCTTCATGCTTTCAGGCTTC 60.135 52.381 0.00 0.00 42.39 3.86
1857 1927 4.164988 AGGGTGAGCAAATAGTCTAGCAAT 59.835 41.667 0.00 0.00 0.00 3.56
1980 2051 3.684305 CGTTGACCATCAGTTTCTGCATA 59.316 43.478 0.00 0.00 0.00 3.14
2013 2084 1.068748 GTCTGAAGCTTGTCGACCGTA 60.069 52.381 14.12 0.00 0.00 4.02
2019 2090 1.777819 CGCTGTCTGAAGCTTGTCG 59.222 57.895 2.10 0.00 41.24 4.35
2460 2537 2.440409 ACCATGCCTTCAGAATGTGAC 58.560 47.619 0.00 0.00 37.40 3.67
2623 2709 8.244113 GCCATTAGTTTAGCAGTTCTACAAATT 58.756 33.333 0.00 0.00 0.00 1.82
2653 2744 0.958091 TTGTTAGCTGCGGCACAATT 59.042 45.000 21.93 0.00 41.70 2.32
2704 2795 1.361668 CCGGTTCGAGCTCCACATTG 61.362 60.000 8.47 0.00 0.00 2.82
2803 2894 2.547299 ACGGGTAAATGTCAAACCGA 57.453 45.000 6.49 0.00 43.69 4.69
2896 3371 9.412460 TGAAATCATGTCAGGATAAAGCTTTAT 57.588 29.630 27.73 27.73 36.14 1.40
2938 3413 3.389329 TGCCCTCTAGAATGTCAAGGATC 59.611 47.826 0.00 0.00 0.00 3.36
3001 3476 2.982130 GACATGAGGGACGCCACT 59.018 61.111 0.00 0.00 0.00 4.00
3031 3506 4.431416 ACATTTTCCTACCTGTGTGACA 57.569 40.909 0.00 0.00 0.00 3.58
3043 3518 7.787623 ATCCTCTTTGATCAAACATTTTCCT 57.212 32.000 16.91 0.00 0.00 3.36
3103 3579 1.492176 AGACCACTTAGGGATGCCATG 59.508 52.381 5.86 0.00 43.89 3.66
3107 3583 4.079253 TCAAAAAGACCACTTAGGGATGC 58.921 43.478 0.00 0.00 43.89 3.91
3126 3602 2.382882 TGTGCAATTGTTCCCTGTCAA 58.617 42.857 7.40 0.00 0.00 3.18
3258 3734 7.384932 TGGTATGTGCTAGTGATGATAAAATCG 59.615 37.037 0.00 0.00 0.00 3.34
3342 3821 2.870372 CAAGTACCCAAGCGCTGC 59.130 61.111 12.58 0.00 0.00 5.25
3343 3822 1.965930 TGCAAGTACCCAAGCGCTG 60.966 57.895 12.58 5.12 0.00 5.18
3344 3823 1.966451 GTGCAAGTACCCAAGCGCT 60.966 57.895 2.64 2.64 34.84 5.92
3345 3824 2.561373 GTGCAAGTACCCAAGCGC 59.439 61.111 0.00 0.00 0.00 5.92
3352 3831 4.895961 AGAAGTTTCTAGGTGCAAGTACC 58.104 43.478 0.00 0.00 41.17 3.34
3575 4056 5.483685 TGCTGTACAGTAACTCCTCAATT 57.516 39.130 23.44 0.00 0.00 2.32
3655 4144 7.365741 ACAATTAGCAACTTTGTCTGATCAAG 58.634 34.615 0.00 0.00 0.00 3.02
3677 4166 4.953667 TGAATTTGGTAGCATTGCAACAA 58.046 34.783 11.91 9.15 0.00 2.83
3683 4172 4.019174 ACCCTCTGAATTTGGTAGCATTG 58.981 43.478 0.00 0.00 0.00 2.82
3902 4428 5.580691 CAGCTGGTACTTGTCGATCAAATTA 59.419 40.000 5.57 0.00 35.48 1.40
4208 6376 2.429930 CCTCCCTGGTTTGTCGCA 59.570 61.111 0.00 0.00 0.00 5.10
4288 6456 2.054453 GCAATCTTGGTCCCTGCCC 61.054 63.158 0.00 0.00 0.00 5.36
4295 6463 3.438434 GGAAGAAGTCTGCAATCTTGGTC 59.562 47.826 7.61 5.20 33.73 4.02
4399 6567 2.303022 CACTCAAGAGGCAAGGTAAGGA 59.697 50.000 1.73 0.00 0.00 3.36
4407 6575 1.211703 TGTTGACCACTCAAGAGGCAA 59.788 47.619 1.73 0.00 37.06 4.52
4424 6605 1.427368 TGGCATAGGAAGGTTGGTGTT 59.573 47.619 0.00 0.00 0.00 3.32
4425 6606 1.072266 TGGCATAGGAAGGTTGGTGT 58.928 50.000 0.00 0.00 0.00 4.16
4426 6607 1.463674 GTGGCATAGGAAGGTTGGTG 58.536 55.000 0.00 0.00 0.00 4.17
4427 6608 0.331616 GGTGGCATAGGAAGGTTGGT 59.668 55.000 0.00 0.00 0.00 3.67
4428 6609 0.625849 AGGTGGCATAGGAAGGTTGG 59.374 55.000 0.00 0.00 0.00 3.77
4429 6610 1.683011 CCAGGTGGCATAGGAAGGTTG 60.683 57.143 0.00 0.00 0.00 3.77
4430 6611 0.625849 CCAGGTGGCATAGGAAGGTT 59.374 55.000 0.00 0.00 0.00 3.50
4431 6612 0.550147 ACCAGGTGGCATAGGAAGGT 60.550 55.000 9.39 1.34 39.32 3.50
4432 6613 0.107017 CACCAGGTGGCATAGGAAGG 60.107 60.000 12.40 0.77 39.32 3.46
4433 6614 0.620556 ACACCAGGTGGCATAGGAAG 59.379 55.000 24.13 0.00 37.94 3.46
4434 6615 0.327924 CACACCAGGTGGCATAGGAA 59.672 55.000 24.13 0.00 44.04 3.36
4435 6616 1.990424 CACACCAGGTGGCATAGGA 59.010 57.895 24.13 0.00 44.04 2.94
4436 6617 4.643795 CACACCAGGTGGCATAGG 57.356 61.111 24.13 2.23 44.04 2.57
4473 6654 3.181494 CCATGTGTAACTGCCATCATGTG 60.181 47.826 0.00 0.00 38.04 3.21
4486 6670 5.009310 AGTCGCGTATATCTTCCATGTGTAA 59.991 40.000 5.77 0.00 0.00 2.41
4597 6781 7.181125 AGGTTCCTGTACTGAAGATTGTAGAAT 59.819 37.037 0.60 0.00 0.00 2.40
4662 6933 4.973168 AGACCTGCTCTGAATGTGTTTAA 58.027 39.130 0.00 0.00 0.00 1.52
4849 8045 5.472137 CCCGGTTTCTCTTGAGTAAATTTCA 59.528 40.000 0.00 0.00 0.00 2.69
4867 8063 2.207924 AGTCAGTCGCTTCCCGGTT 61.208 57.895 0.00 0.00 37.59 4.44
4936 8146 2.593148 TTCCGCGGCTTTCTGCAA 60.593 55.556 23.51 3.41 44.81 4.08
4968 8178 2.036733 TGGGAAGTAGAACCGAACACTG 59.963 50.000 0.00 0.00 0.00 3.66
4984 8198 1.403679 CGTTGTTTTCACTGCTGGGAA 59.596 47.619 3.86 3.86 0.00 3.97
5072 9674 3.459063 GCTTCGGCCCGAGTAGGT 61.459 66.667 5.73 0.00 37.14 3.08
5108 9710 8.237811 TCATAGCTCATCATGTAGTTGTTCTA 57.762 34.615 0.00 0.00 0.00 2.10
5115 9717 6.824553 ACACATTCATAGCTCATCATGTAGT 58.175 36.000 0.00 0.00 0.00 2.73
5134 9736 4.977963 CGAACATTTTGCTTCAGAACACAT 59.022 37.500 0.00 0.00 0.00 3.21
5392 10009 8.985315 ATGTTTCAGGAGCAATTATCTTCATA 57.015 30.769 0.00 0.00 0.00 2.15
5393 10010 7.893124 ATGTTTCAGGAGCAATTATCTTCAT 57.107 32.000 0.00 0.00 0.00 2.57
5394 10011 7.707624 AATGTTTCAGGAGCAATTATCTTCA 57.292 32.000 0.00 0.00 0.00 3.02
5395 10012 8.465201 AGAAATGTTTCAGGAGCAATTATCTTC 58.535 33.333 8.09 0.00 39.61 2.87
5396 10013 8.358582 AGAAATGTTTCAGGAGCAATTATCTT 57.641 30.769 8.09 0.00 39.61 2.40
5397 10014 7.951347 AGAAATGTTTCAGGAGCAATTATCT 57.049 32.000 8.09 0.00 39.61 1.98
5398 10015 9.508567 GTTAGAAATGTTTCAGGAGCAATTATC 57.491 33.333 8.09 0.00 39.61 1.75
5399 10016 8.470002 GGTTAGAAATGTTTCAGGAGCAATTAT 58.530 33.333 8.09 0.00 39.61 1.28
5400 10017 7.450014 TGGTTAGAAATGTTTCAGGAGCAATTA 59.550 33.333 8.09 0.00 39.61 1.40
5401 10018 6.267471 TGGTTAGAAATGTTTCAGGAGCAATT 59.733 34.615 8.09 0.00 39.61 2.32
5402 10019 5.774690 TGGTTAGAAATGTTTCAGGAGCAAT 59.225 36.000 8.09 0.00 39.61 3.56
5403 10020 5.136828 TGGTTAGAAATGTTTCAGGAGCAA 58.863 37.500 8.09 0.00 39.61 3.91
5404 10021 4.724399 TGGTTAGAAATGTTTCAGGAGCA 58.276 39.130 8.09 6.08 39.61 4.26
5405 10022 5.904362 ATGGTTAGAAATGTTTCAGGAGC 57.096 39.130 8.09 3.98 39.61 4.70
5406 10023 7.452880 TCAATGGTTAGAAATGTTTCAGGAG 57.547 36.000 8.09 0.00 39.61 3.69
5407 10024 7.831691 TTCAATGGTTAGAAATGTTTCAGGA 57.168 32.000 8.09 0.00 39.61 3.86
5408 10025 8.885494 TTTTCAATGGTTAGAAATGTTTCAGG 57.115 30.769 8.09 0.00 39.61 3.86
5409 10026 9.533253 ACTTTTCAATGGTTAGAAATGTTTCAG 57.467 29.630 8.09 0.00 38.29 3.02
5410 10027 9.311916 CACTTTTCAATGGTTAGAAATGTTTCA 57.688 29.630 8.09 0.00 38.96 2.69
5411 10028 8.764287 CCACTTTTCAATGGTTAGAAATGTTTC 58.236 33.333 0.00 0.00 38.96 2.78
5412 10029 7.714813 CCCACTTTTCAATGGTTAGAAATGTTT 59.285 33.333 0.00 0.00 38.96 2.83
5413 10030 7.147567 ACCCACTTTTCAATGGTTAGAAATGTT 60.148 33.333 0.00 0.00 38.96 2.71
5414 10031 6.326323 ACCCACTTTTCAATGGTTAGAAATGT 59.674 34.615 0.00 0.00 40.52 2.71
5415 10032 6.758254 ACCCACTTTTCAATGGTTAGAAATG 58.242 36.000 0.00 0.00 34.10 2.32
5416 10033 6.994421 ACCCACTTTTCAATGGTTAGAAAT 57.006 33.333 0.00 0.00 34.10 2.17
5417 10034 7.899648 TTACCCACTTTTCAATGGTTAGAAA 57.100 32.000 0.00 0.00 33.80 2.52
5418 10035 8.485578 AATTACCCACTTTTCAATGGTTAGAA 57.514 30.769 0.00 0.00 33.80 2.10
5419 10036 9.589461 TTAATTACCCACTTTTCAATGGTTAGA 57.411 29.630 0.00 0.00 33.80 2.10
5422 10039 9.500785 CAATTAATTACCCACTTTTCAATGGTT 57.499 29.630 0.00 0.00 33.80 3.67
5423 10040 8.655901 ACAATTAATTACCCACTTTTCAATGGT 58.344 29.630 0.00 0.00 33.80 3.55
5424 10041 8.934825 CACAATTAATTACCCACTTTTCAATGG 58.065 33.333 0.00 0.00 35.59 3.16
5425 10042 9.703892 TCACAATTAATTACCCACTTTTCAATG 57.296 29.630 0.00 0.00 0.00 2.82
5428 10045 9.535878 GTTTCACAATTAATTACCCACTTTTCA 57.464 29.630 0.00 0.00 0.00 2.69
5429 10046 9.535878 TGTTTCACAATTAATTACCCACTTTTC 57.464 29.630 0.00 0.00 0.00 2.29
5433 10050 9.705290 GAAATGTTTCACAATTAATTACCCACT 57.295 29.630 0.00 0.00 37.15 4.00
5434 10051 9.705290 AGAAATGTTTCACAATTAATTACCCAC 57.295 29.630 0.00 0.00 39.61 4.61
5447 10064 9.950680 CTTCTTTAAGCTTAGAAATGTTTCACA 57.049 29.630 11.78 0.00 39.61 3.58
5448 10065 9.952188 ACTTCTTTAAGCTTAGAAATGTTTCAC 57.048 29.630 11.78 0.00 36.60 3.18
5449 10066 9.950680 CACTTCTTTAAGCTTAGAAATGTTTCA 57.049 29.630 11.78 0.00 36.60 2.69
5450 10067 9.399403 CCACTTCTTTAAGCTTAGAAATGTTTC 57.601 33.333 15.57 0.00 36.05 2.78
5451 10068 9.131791 TCCACTTCTTTAAGCTTAGAAATGTTT 57.868 29.630 15.57 0.00 36.05 2.83
5452 10069 8.691661 TCCACTTCTTTAAGCTTAGAAATGTT 57.308 30.769 15.57 0.40 36.05 2.71
5453 10070 8.691661 TTCCACTTCTTTAAGCTTAGAAATGT 57.308 30.769 15.57 8.21 36.05 2.71
5454 10071 9.399403 GTTTCCACTTCTTTAAGCTTAGAAATG 57.601 33.333 11.69 11.69 36.05 2.32
5455 10072 9.131791 TGTTTCCACTTCTTTAAGCTTAGAAAT 57.868 29.630 11.78 0.83 36.05 2.17
5456 10073 8.514330 TGTTTCCACTTCTTTAAGCTTAGAAA 57.486 30.769 11.78 9.99 36.05 2.52
5457 10074 8.514330 TTGTTTCCACTTCTTTAAGCTTAGAA 57.486 30.769 6.24 8.72 36.05 2.10
5458 10075 8.691661 ATTGTTTCCACTTCTTTAAGCTTAGA 57.308 30.769 6.24 0.97 36.05 2.10
5461 10078 9.914131 GATAATTGTTTCCACTTCTTTAAGCTT 57.086 29.630 3.48 3.48 36.05 3.74
5462 10079 8.237267 CGATAATTGTTTCCACTTCTTTAAGCT 58.763 33.333 0.00 0.00 36.05 3.74
5463 10080 8.234546 TCGATAATTGTTTCCACTTCTTTAAGC 58.765 33.333 0.00 0.00 36.05 3.09
5464 10081 9.543018 GTCGATAATTGTTTCCACTTCTTTAAG 57.457 33.333 0.00 0.00 38.77 1.85
5465 10082 8.508875 GGTCGATAATTGTTTCCACTTCTTTAA 58.491 33.333 0.00 0.00 0.00 1.52
5466 10083 7.148540 CGGTCGATAATTGTTTCCACTTCTTTA 60.149 37.037 0.00 0.00 0.00 1.85
5467 10084 6.348213 CGGTCGATAATTGTTTCCACTTCTTT 60.348 38.462 0.00 0.00 0.00 2.52
5468 10085 5.121768 CGGTCGATAATTGTTTCCACTTCTT 59.878 40.000 0.00 0.00 0.00 2.52
5469 10086 4.630069 CGGTCGATAATTGTTTCCACTTCT 59.370 41.667 0.00 0.00 0.00 2.85
5470 10087 4.390909 ACGGTCGATAATTGTTTCCACTTC 59.609 41.667 0.00 0.00 0.00 3.01
5471 10088 4.153475 CACGGTCGATAATTGTTTCCACTT 59.847 41.667 0.00 0.00 0.00 3.16
5472 10089 3.682858 CACGGTCGATAATTGTTTCCACT 59.317 43.478 0.00 0.00 0.00 4.00
5473 10090 3.726782 GCACGGTCGATAATTGTTTCCAC 60.727 47.826 0.00 0.00 0.00 4.02
5474 10091 2.417239 GCACGGTCGATAATTGTTTCCA 59.583 45.455 0.00 0.00 0.00 3.53
5475 10092 2.536130 CGCACGGTCGATAATTGTTTCC 60.536 50.000 0.00 0.00 0.00 3.13
5476 10093 2.689635 CGCACGGTCGATAATTGTTTC 58.310 47.619 0.00 0.00 0.00 2.78
5477 10094 1.201987 GCGCACGGTCGATAATTGTTT 60.202 47.619 0.30 0.00 0.00 2.83
5478 10095 0.372334 GCGCACGGTCGATAATTGTT 59.628 50.000 0.30 0.00 0.00 2.83
5479 10096 1.426041 GGCGCACGGTCGATAATTGT 61.426 55.000 10.83 0.00 0.00 2.71
5480 10097 1.275657 GGCGCACGGTCGATAATTG 59.724 57.895 10.83 0.00 0.00 2.32
5481 10098 1.885850 GGGCGCACGGTCGATAATT 60.886 57.895 10.83 0.00 0.00 1.40
5482 10099 2.279918 GGGCGCACGGTCGATAAT 60.280 61.111 10.83 0.00 0.00 1.28
5483 10100 4.517815 GGGGCGCACGGTCGATAA 62.518 66.667 10.83 0.00 0.00 1.75
5496 10113 2.417719 CTGAATATCTTAGCGTGGGGC 58.582 52.381 0.00 0.00 44.05 5.80
5497 10114 2.289694 CCCTGAATATCTTAGCGTGGGG 60.290 54.545 0.00 0.00 0.00 4.96
5498 10115 2.368875 ACCCTGAATATCTTAGCGTGGG 59.631 50.000 0.00 0.00 38.13 4.61
5499 10116 3.393800 CACCCTGAATATCTTAGCGTGG 58.606 50.000 0.00 0.00 0.00 4.94
5500 10117 3.181465 ACCACCCTGAATATCTTAGCGTG 60.181 47.826 0.00 0.00 0.00 5.34
5501 10118 3.039011 ACCACCCTGAATATCTTAGCGT 58.961 45.455 0.00 0.00 0.00 5.07
5502 10119 3.753294 ACCACCCTGAATATCTTAGCG 57.247 47.619 0.00 0.00 0.00 4.26
5503 10120 5.685728 AGAAACCACCCTGAATATCTTAGC 58.314 41.667 0.00 0.00 0.00 3.09
5504 10121 6.292150 GGAGAAACCACCCTGAATATCTTAG 58.708 44.000 0.00 0.00 38.79 2.18
5505 10122 5.132144 GGGAGAAACCACCCTGAATATCTTA 59.868 44.000 0.00 0.00 42.56 2.10
5506 10123 4.079730 GGGAGAAACCACCCTGAATATCTT 60.080 45.833 0.00 0.00 42.56 2.40
5507 10124 3.459969 GGGAGAAACCACCCTGAATATCT 59.540 47.826 0.00 0.00 42.56 1.98
5508 10125 3.821748 GGGAGAAACCACCCTGAATATC 58.178 50.000 0.00 0.00 42.56 1.63
5509 10126 3.953542 GGGAGAAACCACCCTGAATAT 57.046 47.619 0.00 0.00 42.56 1.28
5516 10133 1.560146 CCTAAGAGGGAGAAACCACCC 59.440 57.143 0.00 0.00 45.88 4.61
5517 10134 2.267192 ACCTAAGAGGGAGAAACCACC 58.733 52.381 0.00 0.00 40.58 4.61
5518 10135 3.676093 CAACCTAAGAGGGAGAAACCAC 58.324 50.000 0.00 0.00 40.58 4.16
5519 10136 2.039879 GCAACCTAAGAGGGAGAAACCA 59.960 50.000 0.00 0.00 40.58 3.67
5520 10137 2.618302 GGCAACCTAAGAGGGAGAAACC 60.618 54.545 0.00 0.00 40.58 3.27
5521 10138 2.712709 GGCAACCTAAGAGGGAGAAAC 58.287 52.381 0.00 0.00 40.58 2.78
5522 10139 1.278127 CGGCAACCTAAGAGGGAGAAA 59.722 52.381 0.00 0.00 40.58 2.52
5523 10140 0.902531 CGGCAACCTAAGAGGGAGAA 59.097 55.000 0.00 0.00 40.58 2.87
5524 10141 0.252103 ACGGCAACCTAAGAGGGAGA 60.252 55.000 0.00 0.00 40.58 3.71
5525 10142 0.175989 GACGGCAACCTAAGAGGGAG 59.824 60.000 0.00 0.00 40.58 4.30
5526 10143 0.543410 TGACGGCAACCTAAGAGGGA 60.543 55.000 0.00 0.00 40.58 4.20
5527 10144 0.541863 ATGACGGCAACCTAAGAGGG 59.458 55.000 0.00 0.00 40.58 4.30
5528 10145 3.181465 ACATATGACGGCAACCTAAGAGG 60.181 47.826 10.38 0.00 42.49 3.69
5534 10151 1.681780 CCCAACATATGACGGCAACCT 60.682 52.381 10.38 0.00 0.00 3.50
5536 10153 1.459450 ACCCAACATATGACGGCAAC 58.541 50.000 10.38 0.00 0.00 4.17
5543 10160 9.555727 GCTCTAATAGTAAAACCCAACATATGA 57.444 33.333 10.38 0.00 0.00 2.15
5546 10163 6.987992 CGGCTCTAATAGTAAAACCCAACATA 59.012 38.462 0.00 0.00 0.00 2.29
5549 10166 5.422145 TCGGCTCTAATAGTAAAACCCAAC 58.578 41.667 0.00 0.00 0.00 3.77
5551 10168 5.454187 CCATCGGCTCTAATAGTAAAACCCA 60.454 44.000 0.00 0.00 0.00 4.51
5552 10169 4.995487 CCATCGGCTCTAATAGTAAAACCC 59.005 45.833 0.00 0.00 0.00 4.11
5555 10172 5.836898 TCCTCCATCGGCTCTAATAGTAAAA 59.163 40.000 0.00 0.00 0.00 1.52
5558 10175 4.567958 CCTCCTCCATCGGCTCTAATAGTA 60.568 50.000 0.00 0.00 0.00 1.82
5559 10176 3.426615 CTCCTCCATCGGCTCTAATAGT 58.573 50.000 0.00 0.00 0.00 2.12
5560 10177 2.757868 CCTCCTCCATCGGCTCTAATAG 59.242 54.545 0.00 0.00 0.00 1.73
5561 10178 2.557676 CCCTCCTCCATCGGCTCTAATA 60.558 54.545 0.00 0.00 0.00 0.98
5563 10180 0.470080 CCCTCCTCCATCGGCTCTAA 60.470 60.000 0.00 0.00 0.00 2.10
5564 10181 1.153989 CCCTCCTCCATCGGCTCTA 59.846 63.158 0.00 0.00 0.00 2.43
5565 10182 2.123077 CCCTCCTCCATCGGCTCT 60.123 66.667 0.00 0.00 0.00 4.09
5566 10183 3.237741 CCCCTCCTCCATCGGCTC 61.238 72.222 0.00 0.00 0.00 4.70
5567 10184 3.767268 TCCCCTCCTCCATCGGCT 61.767 66.667 0.00 0.00 0.00 5.52
5569 10186 3.227276 CGTCCCCTCCTCCATCGG 61.227 72.222 0.00 0.00 0.00 4.18
5570 10187 2.058595 AACGTCCCCTCCTCCATCG 61.059 63.158 0.00 0.00 0.00 3.84
5571 10188 1.265454 ACAACGTCCCCTCCTCCATC 61.265 60.000 0.00 0.00 0.00 3.51
5572 10189 1.229529 ACAACGTCCCCTCCTCCAT 60.230 57.895 0.00 0.00 0.00 3.41
5573 10190 1.911766 GACAACGTCCCCTCCTCCA 60.912 63.158 0.00 0.00 0.00 3.86
5574 10191 2.979649 GACAACGTCCCCTCCTCC 59.020 66.667 0.00 0.00 0.00 4.30
5575 10192 1.530013 TTCGACAACGTCCCCTCCTC 61.530 60.000 0.00 0.00 40.69 3.71
5576 10193 1.532316 TTCGACAACGTCCCCTCCT 60.532 57.895 0.00 0.00 40.69 3.69
5578 10195 0.033090 AACTTCGACAACGTCCCCTC 59.967 55.000 0.00 0.00 40.69 4.30
5579 10196 0.249741 CAACTTCGACAACGTCCCCT 60.250 55.000 0.00 0.00 40.69 4.79
5580 10197 1.838568 GCAACTTCGACAACGTCCCC 61.839 60.000 0.00 0.00 40.69 4.81
5581 10198 0.878961 AGCAACTTCGACAACGTCCC 60.879 55.000 0.00 0.00 40.69 4.46
5583 10200 2.280764 GAAGCAACTTCGACAACGTC 57.719 50.000 0.00 0.00 40.69 4.34
5592 10209 4.808364 AGCTAATCTCATCGAAGCAACTTC 59.192 41.667 5.86 0.00 37.16 3.01
5594 10211 4.399004 AGCTAATCTCATCGAAGCAACT 57.601 40.909 5.86 0.00 35.63 3.16
5595 10212 6.128688 GGATTAGCTAATCTCATCGAAGCAAC 60.129 42.308 34.28 16.65 41.33 4.17
5596 10213 5.928839 GGATTAGCTAATCTCATCGAAGCAA 59.071 40.000 34.28 1.94 41.33 3.91
5599 10216 6.756074 GGATGGATTAGCTAATCTCATCGAAG 59.244 42.308 35.56 0.00 42.85 3.79
5600 10217 6.211384 TGGATGGATTAGCTAATCTCATCGAA 59.789 38.462 35.56 30.28 42.85 3.71
5601 10218 5.716703 TGGATGGATTAGCTAATCTCATCGA 59.283 40.000 35.56 33.41 42.85 3.59
5602 10219 5.970592 TGGATGGATTAGCTAATCTCATCG 58.029 41.667 35.56 0.00 42.85 3.84
5603 10220 7.789273 CATGGATGGATTAGCTAATCTCATC 57.211 40.000 35.60 35.60 42.20 2.92
5620 10515 2.823747 CAGATTATGCCCACCATGGATG 59.176 50.000 21.47 12.84 40.96 3.51
5621 10516 2.225192 CCAGATTATGCCCACCATGGAT 60.225 50.000 21.47 3.04 40.96 3.41
5635 10530 0.685097 GCATCGGTAGCCCCAGATTA 59.315 55.000 0.00 0.00 0.00 1.75
5638 10533 3.161450 GGCATCGGTAGCCCCAGA 61.161 66.667 2.78 0.00 46.50 3.86
5644 10539 0.317020 GCAAATTCGGCATCGGTAGC 60.317 55.000 0.00 0.00 36.95 3.58
5645 10540 0.042188 CGCAAATTCGGCATCGGTAG 60.042 55.000 3.37 0.00 36.95 3.18
5646 10541 0.741574 ACGCAAATTCGGCATCGGTA 60.742 50.000 3.37 0.00 36.95 4.02
5647 10542 1.582610 AACGCAAATTCGGCATCGGT 61.583 50.000 3.37 0.00 36.95 4.69
5648 10543 1.133363 CAACGCAAATTCGGCATCGG 61.133 55.000 3.37 0.00 36.95 4.18
5649 10544 0.179202 TCAACGCAAATTCGGCATCG 60.179 50.000 3.37 0.00 37.82 3.84
5650 10545 2.111756 GATCAACGCAAATTCGGCATC 58.888 47.619 3.37 0.00 0.00 3.91
5651 10546 1.472082 TGATCAACGCAAATTCGGCAT 59.528 42.857 0.00 0.00 0.00 4.40
5652 10547 0.877743 TGATCAACGCAAATTCGGCA 59.122 45.000 0.00 0.00 0.00 5.69
5673 10576 5.643777 GTCTATTCACCCTTTATGCGCATAT 59.356 40.000 29.41 15.29 0.00 1.78
5680 10584 9.672673 CCTTATATGGTCTATTCACCCTTTATG 57.327 37.037 0.00 0.00 35.26 1.90
5698 10602 8.913487 AAGTTTATTAACGGGACCCTTATATG 57.087 34.615 9.41 0.00 39.31 1.78
5702 10606 6.443527 ACCTAAGTTTATTAACGGGACCCTTA 59.556 38.462 9.41 3.74 39.31 2.69
5708 10612 6.855763 TCTCACCTAAGTTTATTAACGGGA 57.144 37.500 9.85 0.00 39.31 5.14
5711 10615 8.928270 ACTGATCTCACCTAAGTTTATTAACG 57.072 34.615 0.00 0.00 39.31 3.18
5715 10619 9.220767 GTCAAACTGATCTCACCTAAGTTTATT 57.779 33.333 5.15 0.00 38.63 1.40
5724 10628 2.628178 TCGTGTCAAACTGATCTCACCT 59.372 45.455 0.00 0.00 0.00 4.00
5735 10639 3.854286 AAATCGTGTCTCGTGTCAAAC 57.146 42.857 0.00 0.00 40.80 2.93
5750 10654 3.139077 GGCCATGGACCTAAGTAAATCG 58.861 50.000 18.40 0.00 0.00 3.34
5759 10663 3.536917 CTCGCGGCCATGGACCTA 61.537 66.667 18.40 0.00 0.00 3.08
5769 11370 1.659954 CTATCACTCAGCTCGCGGC 60.660 63.158 6.13 9.11 42.19 6.53
5781 11382 6.782082 TGAGGGATGACATATAGCTATCAC 57.218 41.667 10.16 0.00 0.00 3.06
5783 11384 7.594351 TCATGAGGGATGACATATAGCTATC 57.406 40.000 10.16 0.00 36.06 2.08
5785 11386 7.360643 AGATCATGAGGGATGACATATAGCTA 58.639 38.462 0.09 0.00 44.12 3.32
5837 11462 4.271049 CACCATACTCGCCAAGATTAGTTG 59.729 45.833 0.00 0.00 0.00 3.16
5838 11463 4.442706 CACCATACTCGCCAAGATTAGTT 58.557 43.478 0.00 0.00 0.00 2.24
5839 11464 3.741388 GCACCATACTCGCCAAGATTAGT 60.741 47.826 0.00 0.00 0.00 2.24
5840 11465 2.802816 GCACCATACTCGCCAAGATTAG 59.197 50.000 0.00 0.00 0.00 1.73
5841 11466 2.169561 TGCACCATACTCGCCAAGATTA 59.830 45.455 0.00 0.00 0.00 1.75
5842 11467 1.065491 TGCACCATACTCGCCAAGATT 60.065 47.619 0.00 0.00 0.00 2.40
5843 11468 0.541392 TGCACCATACTCGCCAAGAT 59.459 50.000 0.00 0.00 0.00 2.40
5844 11469 0.541392 ATGCACCATACTCGCCAAGA 59.459 50.000 0.00 0.00 0.00 3.02
5845 11470 1.064505 CAATGCACCATACTCGCCAAG 59.935 52.381 0.00 0.00 0.00 3.61
5846 11471 1.093972 CAATGCACCATACTCGCCAA 58.906 50.000 0.00 0.00 0.00 4.52
5847 11472 0.035534 ACAATGCACCATACTCGCCA 60.036 50.000 0.00 0.00 0.00 5.69
5848 11473 0.378257 CACAATGCACCATACTCGCC 59.622 55.000 0.00 0.00 0.00 5.54
5849 11474 1.086696 ACACAATGCACCATACTCGC 58.913 50.000 0.00 0.00 0.00 5.03
5850 11475 3.436704 AGAAACACAATGCACCATACTCG 59.563 43.478 0.00 0.00 0.00 4.18
6013 11640 3.673809 AGACTACGCAACGAGAAATGAAC 59.326 43.478 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.