Multiple sequence alignment - TraesCS7A01G557400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G557400 chr7A 100.000 8096 0 0 1 8096 729934833 729942928 0.000000e+00 14951.0
1 TraesCS7A01G557400 chr7A 95.192 104 5 0 1709 1812 492926069 492925966 1.810000e-36 165.0
2 TraesCS7A01G557400 chr7A 78.417 278 19 15 22 266 106681684 106681953 8.470000e-30 143.0
3 TraesCS7A01G557400 chr7A 82.353 153 16 4 136 278 604837417 604837568 1.100000e-23 122.0
4 TraesCS7A01G557400 chr7A 86.000 100 14 0 1633 1732 545059736 545059835 3.090000e-19 108.0
5 TraesCS7A01G557400 chr7A 89.412 85 7 2 58 141 102351662 102351745 1.110000e-18 106.0
6 TraesCS7A01G557400 chr7A 92.857 56 3 1 215 269 119482632 119482687 6.740000e-11 80.5
7 TraesCS7A01G557400 chr7D 91.107 5611 281 91 2576 8039 635848806 635843267 0.000000e+00 7396.0
8 TraesCS7A01G557400 chr7D 90.068 2497 146 53 5580 8034 635678309 635675873 0.000000e+00 3144.0
9 TraesCS7A01G557400 chr7D 89.944 2496 147 61 5580 8034 636329478 636331910 0.000000e+00 3123.0
10 TraesCS7A01G557400 chr7D 90.411 2263 111 42 4075 6275 635691723 635689505 0.000000e+00 2880.0
11 TraesCS7A01G557400 chr7D 90.141 2262 110 44 4075 6275 636307423 636309632 0.000000e+00 2837.0
12 TraesCS7A01G557400 chr7D 88.679 2067 127 38 270 2297 635851098 635849100 0.000000e+00 2422.0
13 TraesCS7A01G557400 chr7D 88.482 955 80 20 5485 6417 636515139 636514193 0.000000e+00 1127.0
14 TraesCS7A01G557400 chr7D 86.852 540 26 16 7474 8003 635689482 635688978 5.490000e-156 562.0
15 TraesCS7A01G557400 chr7D 86.740 543 27 16 7471 8003 636309652 636310159 5.490000e-156 562.0
16 TraesCS7A01G557400 chr7D 92.105 304 9 4 3386 3686 635711614 635711323 1.630000e-111 414.0
17 TraesCS7A01G557400 chr7D 91.118 304 12 4 3386 3686 636300210 636300501 1.640000e-106 398.0
18 TraesCS7A01G557400 chr7D 96.335 191 6 1 3829 4018 635707270 635707080 6.100000e-81 313.0
19 TraesCS7A01G557400 chr7D 81.443 194 18 10 101 276 213382149 213381956 8.470000e-30 143.0
20 TraesCS7A01G557400 chr7D 86.000 100 14 0 1633 1732 452698697 452698796 3.090000e-19 108.0
21 TraesCS7A01G557400 chr7B 91.105 4373 245 69 2576 6851 739929216 739933541 0.000000e+00 5788.0
22 TraesCS7A01G557400 chr7B 87.948 2091 110 67 270 2297 739926980 739928991 0.000000e+00 2335.0
23 TraesCS7A01G557400 chr7B 92.871 1052 58 9 4789 5829 739962494 739963539 0.000000e+00 1511.0
24 TraesCS7A01G557400 chr7B 87.231 1253 105 36 6808 8038 739933550 739934769 0.000000e+00 1376.0
25 TraesCS7A01G557400 chr7B 86.000 100 14 0 1633 1732 475655826 475655925 3.090000e-19 108.0
26 TraesCS7A01G557400 chr7B 89.873 79 8 0 165 243 412933334 412933412 1.440000e-17 102.0
27 TraesCS7A01G557400 chr7B 96.552 58 2 0 8039 8096 624722737 624722680 6.690000e-16 97.1
28 TraesCS7A01G557400 chr1B 80.000 605 94 17 4890 5483 680884162 680884750 9.710000e-114 422.0
29 TraesCS7A01G557400 chr1B 93.590 156 10 0 5552 5707 680884782 680884937 4.890000e-57 233.0
30 TraesCS7A01G557400 chr1B 86.525 141 16 3 3 141 649447665 649447804 1.410000e-32 152.0
31 TraesCS7A01G557400 chr1B 96.053 76 3 0 1707 1782 144366366 144366291 3.070000e-24 124.0
32 TraesCS7A01G557400 chr1B 94.915 59 3 0 2069 2127 144249912 144249854 8.650000e-15 93.5
33 TraesCS7A01G557400 chr1B 94.915 59 3 0 2069 2127 567923739 567923681 8.650000e-15 93.5
34 TraesCS7A01G557400 chr1D 78.571 630 79 31 4890 5480 471291197 471291809 1.660000e-96 364.0
35 TraesCS7A01G557400 chr1D 79.348 184 18 10 6118 6281 495269875 495270058 2.390000e-20 111.0
36 TraesCS7A01G557400 chr1D 93.548 62 4 0 2066 2127 456489617 456489678 8.650000e-15 93.5
37 TraesCS7A01G557400 chr1D 92.308 65 5 0 6373 6437 495270171 495270235 8.650000e-15 93.5
38 TraesCS7A01G557400 chr4B 86.498 237 26 2 2061 2297 575892204 575892434 1.040000e-63 255.0
39 TraesCS7A01G557400 chr4B 96.610 59 2 0 8038 8096 672948906 672948964 1.860000e-16 99.0
40 TraesCS7A01G557400 chr3A 84.234 222 17 8 23 227 69643272 69643492 4.960000e-47 200.0
41 TraesCS7A01G557400 chr3A 85.714 105 15 0 165 269 714586793 714586689 2.390000e-20 111.0
42 TraesCS7A01G557400 chr3A 80.342 117 10 6 166 270 171772052 171772167 8.710000e-10 76.8
43 TraesCS7A01G557400 chr5D 97.030 101 3 0 1709 1809 203945757 203945857 3.890000e-38 171.0
44 TraesCS7A01G557400 chr5D 94.915 59 3 0 2069 2127 516472063 516472121 8.650000e-15 93.5
45 TraesCS7A01G557400 chr5D 94.915 59 3 0 2069 2127 544758278 544758220 8.650000e-15 93.5
46 TraesCS7A01G557400 chr4A 94.175 103 6 0 1707 1809 296243194 296243092 3.020000e-34 158.0
47 TraesCS7A01G557400 chr4A 87.255 102 13 0 165 266 467292720 467292821 5.130000e-22 117.0
48 TraesCS7A01G557400 chr4A 73.962 265 45 11 20 266 120564299 120564557 1.450000e-12 86.1
49 TraesCS7A01G557400 chr6B 77.517 298 37 12 1 269 274061396 274061100 1.410000e-32 152.0
50 TraesCS7A01G557400 chr6B 93.750 64 4 0 8033 8096 20862830 20862893 6.690000e-16 97.1
51 TraesCS7A01G557400 chr6B 96.552 58 2 0 8039 8096 188678116 188678173 6.690000e-16 97.1
52 TraesCS7A01G557400 chr6B 75.446 224 31 12 22 227 140419498 140419715 4.030000e-13 87.9
53 TraesCS7A01G557400 chr6B 75.446 224 31 12 22 227 140430017 140430234 4.030000e-13 87.9
54 TraesCS7A01G557400 chr6B 75.446 224 31 12 22 227 140446619 140446836 4.030000e-13 87.9
55 TraesCS7A01G557400 chrUn 85.000 120 16 2 3890 4008 74813005 74813123 3.970000e-23 121.0
56 TraesCS7A01G557400 chrUn 94.915 59 3 0 2069 2127 97858983 97858925 8.650000e-15 93.5
57 TraesCS7A01G557400 chr6A 76.573 286 28 16 22 270 79193295 79193578 3.970000e-23 121.0
58 TraesCS7A01G557400 chr1A 98.276 58 1 0 8038 8095 385360801 385360858 1.440000e-17 102.0
59 TraesCS7A01G557400 chr1A 96.610 59 2 0 8038 8096 500901157 500901099 1.860000e-16 99.0
60 TraesCS7A01G557400 chr2A 90.667 75 7 0 165 239 773858046 773857972 5.170000e-17 100.0
61 TraesCS7A01G557400 chr2A 84.112 107 12 2 165 266 182038230 182038336 1.860000e-16 99.0
62 TraesCS7A01G557400 chr2A 76.316 152 24 7 4 151 50960651 50960508 4.050000e-08 71.3
63 TraesCS7A01G557400 chr5B 96.610 59 2 0 8038 8096 101250356 101250298 1.860000e-16 99.0
64 TraesCS7A01G557400 chr5B 96.552 58 2 0 8039 8096 101253037 101252980 6.690000e-16 97.1
65 TraesCS7A01G557400 chr2B 92.424 66 4 1 8031 8096 9711788 9711724 8.650000e-15 93.5
66 TraesCS7A01G557400 chr5A 100.000 28 0 0 7007 7034 124505288 124505315 1.500000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G557400 chr7A 729934833 729942928 8095 False 14951.000000 14951 100.000000 1 8096 1 chr7A.!!$F6 8095
1 TraesCS7A01G557400 chr7D 635843267 635851098 7831 True 4909.000000 7396 89.893000 270 8039 2 chr7D.!!$R7 7769
2 TraesCS7A01G557400 chr7D 635675873 635678309 2436 True 3144.000000 3144 90.068000 5580 8034 1 chr7D.!!$R2 2454
3 TraesCS7A01G557400 chr7D 636329478 636331910 2432 False 3123.000000 3123 89.944000 5580 8034 1 chr7D.!!$F3 2454
4 TraesCS7A01G557400 chr7D 635688978 635691723 2745 True 1721.000000 2880 88.631500 4075 8003 2 chr7D.!!$R6 3928
5 TraesCS7A01G557400 chr7D 636307423 636310159 2736 False 1699.500000 2837 88.440500 4075 8003 2 chr7D.!!$F4 3928
6 TraesCS7A01G557400 chr7D 636514193 636515139 946 True 1127.000000 1127 88.482000 5485 6417 1 chr7D.!!$R5 932
7 TraesCS7A01G557400 chr7B 739926980 739934769 7789 False 3166.333333 5788 88.761333 270 8038 3 chr7B.!!$F4 7768
8 TraesCS7A01G557400 chr7B 739962494 739963539 1045 False 1511.000000 1511 92.871000 4789 5829 1 chr7B.!!$F3 1040
9 TraesCS7A01G557400 chr1B 680884162 680884937 775 False 327.500000 422 86.795000 4890 5707 2 chr1B.!!$F2 817
10 TraesCS7A01G557400 chr1D 471291197 471291809 612 False 364.000000 364 78.571000 4890 5480 1 chr1D.!!$F2 590

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
767 802 0.033109 TTCCTCTCCGATCTCTGCCA 60.033 55.000 0.00 0.0 0.00 4.92 F
2006 2097 0.038744 CCCTGCAGGTCCTTGACATT 59.961 55.000 30.63 0.0 33.68 2.71 F
2807 2979 0.329261 TGCATTCCAGGCTTACAGCT 59.671 50.000 0.00 0.0 41.99 4.24 F
2808 2980 1.559219 TGCATTCCAGGCTTACAGCTA 59.441 47.619 0.00 0.0 41.99 3.32 F
3398 3602 2.168458 AGAAGGCCCTAAGAGGAGTC 57.832 55.000 0.00 0.0 37.67 3.36 F
5248 5543 1.919918 TCTTGTTGCCTTTTTGTGCG 58.080 45.000 0.00 0.0 0.00 5.34 F
6461 6810 0.037590 TGCCGGCATCAAGGTAAACT 59.962 50.000 29.03 0.0 0.00 2.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2151 2250 0.170561 CCGGTGAGAAGAACGATCGT 59.829 55.000 16.60 16.6 0.00 3.73 R
3899 4106 0.817654 GCCCCTCCACTATTTTGCAC 59.182 55.000 0.00 0.0 0.00 4.57 R
4199 4409 1.298859 GCAAAATCCGTGCCTCGACT 61.299 55.000 0.02 0.0 42.86 4.18 R
4505 4735 3.009723 AGTACGGCTGTTTGATGGATTG 58.990 45.455 1.99 0.0 0.00 2.67 R
5282 5578 2.448961 TCCCCCAACCTTCATCAAGAAA 59.551 45.455 0.00 0.0 35.40 2.52 R
6772 7132 0.109132 GCAAAGATTTCAGGGTGCGG 60.109 55.000 0.00 0.0 0.00 5.69 R
7785 8308 1.137404 CGGCCTTTTGGATCAAGCG 59.863 57.895 0.00 0.0 44.07 4.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 4.759205 GGCCCACCAAAGCCCGAT 62.759 66.667 0.00 0.00 43.76 4.18
45 46 2.679996 GCCCACCAAAGCCCGATT 60.680 61.111 0.00 0.00 0.00 3.34
46 47 2.710902 GCCCACCAAAGCCCGATTC 61.711 63.158 0.00 0.00 0.00 2.52
47 48 1.304052 CCCACCAAAGCCCGATTCA 60.304 57.895 0.00 0.00 0.00 2.57
48 49 0.897863 CCCACCAAAGCCCGATTCAA 60.898 55.000 0.00 0.00 0.00 2.69
49 50 0.965439 CCACCAAAGCCCGATTCAAA 59.035 50.000 0.00 0.00 0.00 2.69
50 51 1.342819 CCACCAAAGCCCGATTCAAAA 59.657 47.619 0.00 0.00 0.00 2.44
51 52 2.224161 CCACCAAAGCCCGATTCAAAAA 60.224 45.455 0.00 0.00 0.00 1.94
65 66 2.600470 AAAAACCCAGGCCCGAGC 60.600 61.111 0.00 0.00 38.76 5.03
95 96 2.262292 CGACCGTCGGGCCTAAAA 59.738 61.111 17.28 0.00 36.00 1.52
96 97 1.374505 CGACCGTCGGGCCTAAAAA 60.375 57.895 17.28 0.00 36.00 1.94
97 98 0.741927 CGACCGTCGGGCCTAAAAAT 60.742 55.000 17.28 0.00 36.00 1.82
98 99 1.456296 GACCGTCGGGCCTAAAAATT 58.544 50.000 17.28 0.00 36.48 1.82
99 100 1.131693 GACCGTCGGGCCTAAAAATTG 59.868 52.381 17.28 0.00 36.48 2.32
100 101 0.454196 CCGTCGGGCCTAAAAATTGG 59.546 55.000 2.34 0.00 0.00 3.16
101 102 0.454196 CGTCGGGCCTAAAAATTGGG 59.546 55.000 0.84 0.00 0.00 4.12
108 109 2.967599 CCTAAAAATTGGGCCTGAGC 57.032 50.000 4.53 0.00 38.76 4.26
118 119 4.864334 GCCTGAGCCCGGTCCATG 62.864 72.222 0.00 0.00 0.00 3.66
119 120 3.083349 CCTGAGCCCGGTCCATGA 61.083 66.667 0.00 0.00 0.00 3.07
120 121 2.503061 CTGAGCCCGGTCCATGAG 59.497 66.667 0.00 0.00 0.00 2.90
121 122 3.746949 CTGAGCCCGGTCCATGAGC 62.747 68.421 0.00 0.00 0.00 4.26
122 123 3.474570 GAGCCCGGTCCATGAGCT 61.475 66.667 0.00 0.00 36.25 4.09
123 124 2.041922 AGCCCGGTCCATGAGCTA 60.042 61.111 0.00 0.00 30.46 3.32
124 125 1.686325 GAGCCCGGTCCATGAGCTAA 61.686 60.000 0.00 0.00 32.97 3.09
125 126 1.223487 GCCCGGTCCATGAGCTAAA 59.777 57.895 0.00 0.00 0.00 1.85
126 127 0.393808 GCCCGGTCCATGAGCTAAAA 60.394 55.000 0.00 0.00 0.00 1.52
127 128 1.668419 CCCGGTCCATGAGCTAAAAG 58.332 55.000 0.00 0.00 0.00 2.27
128 129 1.017387 CCGGTCCATGAGCTAAAAGC 58.983 55.000 0.00 0.00 42.84 3.51
129 130 1.017387 CGGTCCATGAGCTAAAAGCC 58.983 55.000 0.00 0.00 43.77 4.35
130 131 1.407437 CGGTCCATGAGCTAAAAGCCT 60.407 52.381 0.00 0.00 43.77 4.58
131 132 2.019984 GGTCCATGAGCTAAAAGCCTG 58.980 52.381 0.00 0.00 43.77 4.85
132 133 1.403323 GTCCATGAGCTAAAAGCCTGC 59.597 52.381 0.00 0.00 43.77 4.85
133 134 0.743097 CCATGAGCTAAAAGCCTGCC 59.257 55.000 0.00 0.00 43.77 4.85
134 135 0.379669 CATGAGCTAAAAGCCTGCCG 59.620 55.000 0.00 0.00 43.77 5.69
135 136 0.749454 ATGAGCTAAAAGCCTGCCGG 60.749 55.000 0.00 0.00 43.77 6.13
136 137 2.044946 AGCTAAAAGCCTGCCGGG 60.045 61.111 2.18 0.00 43.77 5.73
148 149 3.777910 GCCGGGCCTCCTCGTTAA 61.778 66.667 8.12 0.00 0.00 2.01
149 150 3.103091 GCCGGGCCTCCTCGTTAAT 62.103 63.158 8.12 0.00 0.00 1.40
150 151 1.227556 CCGGGCCTCCTCGTTAATG 60.228 63.158 0.84 0.00 0.00 1.90
151 152 1.887707 CGGGCCTCCTCGTTAATGC 60.888 63.158 0.84 0.00 0.00 3.56
152 153 1.887707 GGGCCTCCTCGTTAATGCG 60.888 63.158 0.84 0.00 0.00 4.73
153 154 2.534903 GGCCTCCTCGTTAATGCGC 61.535 63.158 0.00 0.00 0.00 6.09
154 155 2.871427 GCCTCCTCGTTAATGCGCG 61.871 63.158 0.00 0.00 0.00 6.86
155 156 1.226859 CCTCCTCGTTAATGCGCGA 60.227 57.895 12.10 0.00 35.70 5.87
156 157 0.804544 CCTCCTCGTTAATGCGCGAA 60.805 55.000 12.10 0.00 36.65 4.70
157 158 1.209128 CTCCTCGTTAATGCGCGAAT 58.791 50.000 12.10 0.00 36.65 3.34
158 159 2.390938 CTCCTCGTTAATGCGCGAATA 58.609 47.619 12.10 0.00 36.65 1.75
159 160 2.987149 CTCCTCGTTAATGCGCGAATAT 59.013 45.455 12.10 0.00 36.65 1.28
160 161 2.729360 TCCTCGTTAATGCGCGAATATG 59.271 45.455 12.10 0.00 36.65 1.78
161 162 2.729360 CCTCGTTAATGCGCGAATATGA 59.271 45.455 12.10 0.00 36.65 2.15
162 163 3.421826 CCTCGTTAATGCGCGAATATGAC 60.422 47.826 12.10 3.63 36.65 3.06
163 164 2.152301 TCGTTAATGCGCGAATATGACG 59.848 45.455 12.10 16.37 33.96 4.35
164 165 2.717595 CGTTAATGCGCGAATATGACGG 60.718 50.000 12.10 0.00 0.00 4.79
165 166 1.424403 TAATGCGCGAATATGACGGG 58.576 50.000 12.10 12.73 44.26 5.28
168 169 2.029073 CGCGAATATGACGGGCCT 59.971 61.111 0.00 0.00 36.96 5.19
169 170 2.310233 CGCGAATATGACGGGCCTG 61.310 63.158 11.02 11.02 36.96 4.85
170 171 1.961277 GCGAATATGACGGGCCTGG 60.961 63.158 18.00 4.46 0.00 4.45
171 172 1.961277 CGAATATGACGGGCCTGGC 60.961 63.158 18.00 15.20 0.00 4.85
188 189 4.617875 CCGTCGGGCTTGAAATCT 57.382 55.556 2.34 0.00 0.00 2.40
189 190 3.752796 CCGTCGGGCTTGAAATCTA 57.247 52.632 2.34 0.00 0.00 1.98
190 191 1.571919 CCGTCGGGCTTGAAATCTAG 58.428 55.000 2.34 0.00 0.00 2.43
191 192 1.571919 CGTCGGGCTTGAAATCTAGG 58.428 55.000 0.00 0.00 0.00 3.02
192 193 1.300481 GTCGGGCTTGAAATCTAGGC 58.700 55.000 9.36 9.36 41.89 3.93
196 197 2.717639 GGCTTGAAATCTAGGCCTGA 57.282 50.000 17.99 11.61 39.68 3.86
197 198 2.570135 GGCTTGAAATCTAGGCCTGAG 58.430 52.381 17.99 9.21 39.68 3.35
198 199 1.946081 GCTTGAAATCTAGGCCTGAGC 59.054 52.381 17.99 7.87 38.76 4.26
215 216 4.820744 CCCGGCCCATGGACAAGG 62.821 72.222 15.22 9.16 0.00 3.61
216 217 4.047125 CCGGCCCATGGACAAGGT 62.047 66.667 15.22 0.00 0.00 3.50
217 218 2.438434 CGGCCCATGGACAAGGTC 60.438 66.667 15.22 0.00 0.00 3.85
218 219 2.438434 GGCCCATGGACAAGGTCG 60.438 66.667 15.22 0.00 32.65 4.79
219 220 2.438434 GCCCATGGACAAGGTCGG 60.438 66.667 15.22 0.00 32.65 4.79
220 221 2.272146 CCCATGGACAAGGTCGGG 59.728 66.667 15.22 0.00 32.65 5.14
221 222 2.438434 CCATGGACAAGGTCGGGC 60.438 66.667 5.56 0.00 32.65 6.13
222 223 2.438434 CATGGACAAGGTCGGGCC 60.438 66.667 0.00 0.00 32.65 5.80
223 224 4.096003 ATGGACAAGGTCGGGCCG 62.096 66.667 22.51 22.51 43.70 6.13
232 233 3.744719 GTCGGGCCGGGCTTTTTC 61.745 66.667 28.80 9.71 0.00 2.29
241 242 3.744719 GGCTTTTTCGGGCCGACC 61.745 66.667 31.23 22.42 38.91 4.79
306 307 0.605589 AACTCTACACAAAGCCGCCC 60.606 55.000 0.00 0.00 0.00 6.13
360 361 8.519526 TGGGAAGTAATTATAAGTTTGCACAAG 58.480 33.333 0.00 0.00 0.00 3.16
395 398 9.725019 TTTGACAAGATAATGAACACACTAGAT 57.275 29.630 0.00 0.00 0.00 1.98
517 521 7.073088 AGAGAAATTAAGGGAGGAAATAGGAGG 59.927 40.741 0.00 0.00 0.00 4.30
518 522 6.914841 AGAAATTAAGGGAGGAAATAGGAGGA 59.085 38.462 0.00 0.00 0.00 3.71
519 523 6.771934 AATTAAGGGAGGAAATAGGAGGAG 57.228 41.667 0.00 0.00 0.00 3.69
627 636 0.398522 ACCTCCACTCCACACTCACA 60.399 55.000 0.00 0.00 0.00 3.58
628 637 0.319728 CCTCCACTCCACACTCACAG 59.680 60.000 0.00 0.00 0.00 3.66
629 638 0.320247 CTCCACTCCACACTCACAGC 60.320 60.000 0.00 0.00 0.00 4.40
633 642 2.447572 TCCACACTCACAGCCCCA 60.448 61.111 0.00 0.00 0.00 4.96
634 643 2.055689 CTCCACACTCACAGCCCCAA 62.056 60.000 0.00 0.00 0.00 4.12
635 644 1.898574 CCACACTCACAGCCCCAAC 60.899 63.158 0.00 0.00 0.00 3.77
636 645 1.898574 CACACTCACAGCCCCAACC 60.899 63.158 0.00 0.00 0.00 3.77
637 646 2.282462 CACTCACAGCCCCAACCC 60.282 66.667 0.00 0.00 0.00 4.11
638 647 3.580319 ACTCACAGCCCCAACCCC 61.580 66.667 0.00 0.00 0.00 4.95
639 648 3.260100 CTCACAGCCCCAACCCCT 61.260 66.667 0.00 0.00 0.00 4.79
640 649 3.256960 TCACAGCCCCAACCCCTC 61.257 66.667 0.00 0.00 0.00 4.30
642 651 4.617595 ACAGCCCCAACCCCTCCT 62.618 66.667 0.00 0.00 0.00 3.69
649 658 1.394151 CCAACCCCTCCTCCTCTCT 59.606 63.158 0.00 0.00 0.00 3.10
650 659 0.689412 CCAACCCCTCCTCCTCTCTC 60.689 65.000 0.00 0.00 0.00 3.20
651 660 0.338120 CAACCCCTCCTCCTCTCTCT 59.662 60.000 0.00 0.00 0.00 3.10
655 664 1.411501 CCCCTCCTCCTCTCTCTGAAG 60.412 61.905 0.00 0.00 0.00 3.02
668 677 0.037882 TCTGAAGGAACAGAGCAGCG 60.038 55.000 0.00 0.00 41.21 5.18
669 678 0.037882 CTGAAGGAACAGAGCAGCGA 60.038 55.000 0.00 0.00 39.94 4.93
676 685 1.603236 AACAGAGCAGCGAGAGAGGG 61.603 60.000 0.00 0.00 0.00 4.30
691 714 1.002274 AGGGACTCCTGTAGCCCAG 59.998 63.158 0.00 0.00 42.98 4.45
699 722 1.517832 CTGTAGCCCAGGAGTTCGG 59.482 63.158 0.00 0.00 37.54 4.30
700 723 0.970937 CTGTAGCCCAGGAGTTCGGA 60.971 60.000 0.00 0.00 37.54 4.55
701 724 0.325296 TGTAGCCCAGGAGTTCGGAT 60.325 55.000 0.00 0.00 0.00 4.18
702 725 0.389757 GTAGCCCAGGAGTTCGGATC 59.610 60.000 0.00 0.00 0.00 3.36
703 726 1.107538 TAGCCCAGGAGTTCGGATCG 61.108 60.000 0.00 0.00 0.00 3.69
704 727 2.423898 GCCCAGGAGTTCGGATCGA 61.424 63.158 0.00 0.00 0.00 3.59
705 728 1.437986 CCCAGGAGTTCGGATCGAC 59.562 63.158 0.00 0.00 34.89 4.20
706 729 1.437986 CCAGGAGTTCGGATCGACC 59.562 63.158 0.00 0.00 34.89 4.79
707 730 1.437986 CAGGAGTTCGGATCGACCC 59.562 63.158 0.00 0.00 34.89 4.46
708 731 1.757340 AGGAGTTCGGATCGACCCC 60.757 63.158 0.00 0.00 34.89 4.95
709 732 2.794028 GGAGTTCGGATCGACCCCC 61.794 68.421 0.00 0.00 34.89 5.40
710 733 1.757340 GAGTTCGGATCGACCCCCT 60.757 63.158 0.00 0.00 34.89 4.79
737 760 0.179073 CCAGCCAAGGTGACGATAGG 60.179 60.000 0.00 0.00 43.77 2.57
764 799 2.753296 GCATTTCCTCTCCGATCTCTG 58.247 52.381 0.00 0.00 0.00 3.35
765 800 2.753296 CATTTCCTCTCCGATCTCTGC 58.247 52.381 0.00 0.00 0.00 4.26
766 801 1.115467 TTTCCTCTCCGATCTCTGCC 58.885 55.000 0.00 0.00 0.00 4.85
767 802 0.033109 TTCCTCTCCGATCTCTGCCA 60.033 55.000 0.00 0.00 0.00 4.92
768 803 0.187117 TCCTCTCCGATCTCTGCCAT 59.813 55.000 0.00 0.00 0.00 4.40
769 804 1.047002 CCTCTCCGATCTCTGCCATT 58.953 55.000 0.00 0.00 0.00 3.16
770 805 1.000731 CCTCTCCGATCTCTGCCATTC 59.999 57.143 0.00 0.00 0.00 2.67
771 806 0.670706 TCTCCGATCTCTGCCATTCG 59.329 55.000 0.00 0.00 0.00 3.34
772 807 0.943359 CTCCGATCTCTGCCATTCGC 60.943 60.000 0.00 0.00 38.31 4.70
773 808 2.305853 CCGATCTCTGCCATTCGCG 61.306 63.158 0.00 0.00 42.08 5.87
774 809 1.589993 CGATCTCTGCCATTCGCGT 60.590 57.895 5.77 0.00 42.08 6.01
775 810 1.543941 CGATCTCTGCCATTCGCGTC 61.544 60.000 5.77 0.00 42.08 5.19
776 811 0.249238 GATCTCTGCCATTCGCGTCT 60.249 55.000 5.77 0.00 42.08 4.18
777 812 0.249238 ATCTCTGCCATTCGCGTCTC 60.249 55.000 5.77 0.00 42.08 3.36
778 813 1.140589 CTCTGCCATTCGCGTCTCT 59.859 57.895 5.77 0.00 42.08 3.10
804 839 2.754254 GGCCGGTGGATTTGGGTC 60.754 66.667 1.90 0.00 0.00 4.46
888 928 5.852827 TCTTGTTTGGTTTGATGAAATCCC 58.147 37.500 0.00 0.00 44.73 3.85
918 958 5.998454 ATATCTTGTTTGCTTCGAGATGG 57.002 39.130 12.80 0.00 36.88 3.51
986 1031 1.181741 TCTCTCTCGTTGGCTGCAGT 61.182 55.000 16.64 0.00 0.00 4.40
1119 1167 2.202892 GGCTTCGGCTTCTACCCG 60.203 66.667 0.00 0.00 46.88 5.28
1397 1460 3.770040 CGACGCCCTGTCCATGGA 61.770 66.667 11.44 11.44 45.23 3.41
1401 1464 3.717294 GCCCTGTCCATGGACGGT 61.717 66.667 39.29 0.00 46.88 4.83
1403 1466 2.290287 CCCTGTCCATGGACGGTGA 61.290 63.158 39.29 23.28 46.88 4.02
1404 1467 1.079127 CCTGTCCATGGACGGTGAC 60.079 63.158 39.29 19.79 46.88 3.67
1569 1632 2.262915 CACTTCCTCGCCGAGCTT 59.737 61.111 9.01 0.00 0.00 3.74
1809 1872 2.686835 GGCCAGGAGAGGTGAGCT 60.687 66.667 0.00 0.00 0.00 4.09
1812 1875 2.183811 CAGGAGAGGTGAGCTGCG 59.816 66.667 0.00 0.00 0.00 5.18
1816 1879 1.227205 GAGAGGTGAGCTGCGATGG 60.227 63.158 0.00 0.00 0.00 3.51
1818 1881 1.078848 GAGGTGAGCTGCGATGGTT 60.079 57.895 0.00 0.00 0.00 3.67
1819 1882 0.175760 GAGGTGAGCTGCGATGGTTA 59.824 55.000 0.00 0.00 0.00 2.85
1820 1883 0.108138 AGGTGAGCTGCGATGGTTAC 60.108 55.000 0.00 0.00 0.00 2.50
1822 1885 1.676014 GGTGAGCTGCGATGGTTACTT 60.676 52.381 0.00 0.00 0.00 2.24
1849 1940 4.635324 CCTCTGTTTGTTTGTTGGCATTTT 59.365 37.500 0.00 0.00 0.00 1.82
1866 1957 5.101628 GCATTTTGTTTCTGACTGTGTTCA 58.898 37.500 0.00 0.00 0.00 3.18
1868 1959 6.256321 GCATTTTGTTTCTGACTGTGTTCATT 59.744 34.615 0.00 0.00 0.00 2.57
1870 1961 5.499139 TTGTTTCTGACTGTGTTCATTCC 57.501 39.130 0.00 0.00 0.00 3.01
1871 1962 4.522114 TGTTTCTGACTGTGTTCATTCCA 58.478 39.130 0.00 0.00 0.00 3.53
1876 1967 6.298441 TCTGACTGTGTTCATTCCATGATA 57.702 37.500 0.00 0.00 39.39 2.15
1879 1970 7.281549 TCTGACTGTGTTCATTCCATGATAATG 59.718 37.037 12.18 12.18 39.39 1.90
2006 2097 0.038744 CCCTGCAGGTCCTTGACATT 59.961 55.000 30.63 0.00 33.68 2.71
2055 2146 5.894393 AGGTACAGTACATTGCTAGATCACT 59.106 40.000 12.89 0.00 0.00 3.41
2056 2147 6.381420 AGGTACAGTACATTGCTAGATCACTT 59.619 38.462 12.89 0.00 0.00 3.16
2061 2156 9.137459 ACAGTACATTGCTAGATCACTTACTAT 57.863 33.333 0.00 0.00 0.00 2.12
2067 2162 9.428097 CATTGCTAGATCACTTACTATGCATTA 57.572 33.333 3.54 0.00 0.00 1.90
2097 2196 3.039252 AGTAGGAGATCTGGGTGAAGG 57.961 52.381 0.00 0.00 0.00 3.46
2111 2210 3.054065 GGGTGAAGGACTGAAAGGATGAT 60.054 47.826 0.00 0.00 39.30 2.45
2128 2227 5.185249 AGGATGATATGCTTCCATGAATTGC 59.815 40.000 0.00 0.00 41.96 3.56
2132 2231 1.477553 TGCTTCCATGAATTGCCCTC 58.522 50.000 0.00 0.00 0.00 4.30
2151 2250 3.638627 CCTCTAGATATGCGCCATATGGA 59.361 47.826 26.47 4.86 37.20 3.41
2166 2265 4.261614 CCATATGGACGATCGTTCTTCTCA 60.262 45.833 26.17 15.39 37.39 3.27
2190 2289 4.689549 TTCGGGAGGAGGCGGTCA 62.690 66.667 0.00 0.00 0.00 4.02
2244 2343 1.794714 ATCAGACCATTCGCCCTACT 58.205 50.000 0.00 0.00 0.00 2.57
2283 2383 4.945246 TCAATATCGGTAAAGCTCTCACC 58.055 43.478 0.00 0.00 0.00 4.02
2287 2387 3.764237 TCGGTAAAGCTCTCACCTTTT 57.236 42.857 9.05 0.00 34.58 2.27
2297 2397 4.942483 AGCTCTCACCTTTTCTCATGAATG 59.058 41.667 0.00 0.00 31.56 2.67
2298 2398 4.438472 GCTCTCACCTTTTCTCATGAATGC 60.438 45.833 0.00 0.00 31.56 3.56
2299 2399 4.914983 TCTCACCTTTTCTCATGAATGCT 58.085 39.130 0.00 0.00 31.56 3.79
2303 2403 6.003326 TCACCTTTTCTCATGAATGCTTGTA 58.997 36.000 0.00 0.00 31.56 2.41
2309 2409 7.628769 TTTCTCATGAATGCTTGTATGCTAA 57.371 32.000 0.00 0.00 31.56 3.09
2310 2410 7.812690 TTCTCATGAATGCTTGTATGCTAAT 57.187 32.000 0.00 0.00 0.00 1.73
2311 2411 7.430992 TCTCATGAATGCTTGTATGCTAATC 57.569 36.000 0.00 0.00 0.00 1.75
2312 2412 6.993902 TCTCATGAATGCTTGTATGCTAATCA 59.006 34.615 0.00 0.00 0.00 2.57
2313 2413 7.664318 TCTCATGAATGCTTGTATGCTAATCAT 59.336 33.333 0.00 0.00 39.17 2.45
2315 2415 9.457436 TCATGAATGCTTGTATGCTAATCATAT 57.543 29.630 0.00 0.00 39.63 1.78
2316 2416 9.503427 CATGAATGCTTGTATGCTAATCATATG 57.497 33.333 0.00 0.00 39.63 1.78
2317 2417 8.625786 TGAATGCTTGTATGCTAATCATATGT 57.374 30.769 1.90 0.00 39.63 2.29
2318 2418 9.723601 TGAATGCTTGTATGCTAATCATATGTA 57.276 29.630 1.90 0.00 39.63 2.29
2322 2422 9.166173 TGCTTGTATGCTAATCATATGTATTCC 57.834 33.333 1.90 0.00 39.63 3.01
2323 2423 8.616076 GCTTGTATGCTAATCATATGTATTCCC 58.384 37.037 1.90 0.00 39.63 3.97
2327 2427 9.482627 GTATGCTAATCATATGTATTCCCTAGC 57.517 37.037 1.90 7.67 39.63 3.42
2333 2476 8.671987 AATCATATGTATTCCCTAGCAGTACT 57.328 34.615 1.90 0.00 0.00 2.73
2341 2484 8.003044 TGTATTCCCTAGCAGTACTAGTACATT 58.997 37.037 29.87 18.45 46.10 2.71
2347 2490 6.973474 CCTAGCAGTACTAGTACATTGTGAAC 59.027 42.308 29.87 11.11 46.10 3.18
2350 2493 5.100259 CAGTACTAGTACATTGTGAACCCG 58.900 45.833 29.87 4.64 38.48 5.28
2357 2504 3.066291 ACATTGTGAACCCGCTGATTA 57.934 42.857 0.00 0.00 0.00 1.75
2386 2533 7.279313 AGTGGAAATTGCTGCATTTTCATATTC 59.721 33.333 33.10 22.74 36.23 1.75
2387 2534 7.064847 GTGGAAATTGCTGCATTTTCATATTCA 59.935 33.333 33.10 24.24 36.23 2.57
2403 2550 7.368480 TCATATTCACATCAGTGTTGTTCTG 57.632 36.000 4.03 0.00 46.01 3.02
2404 2551 3.969117 TTCACATCAGTGTTGTTCTGC 57.031 42.857 4.03 0.00 46.01 4.26
2407 2554 2.874086 CACATCAGTGTTGTTCTGCTGA 59.126 45.455 4.03 0.00 40.92 4.26
2433 2580 6.205658 ACAGAACATTCAGAACTAAAGCCTTC 59.794 38.462 0.00 0.00 0.00 3.46
2434 2581 6.429385 CAGAACATTCAGAACTAAAGCCTTCT 59.571 38.462 0.00 0.00 0.00 2.85
2445 2592 9.153479 AGAACTAAAGCCTTCTGATAGATATGT 57.847 33.333 0.00 0.00 0.00 2.29
2446 2593 9.202273 GAACTAAAGCCTTCTGATAGATATGTG 57.798 37.037 0.00 0.00 0.00 3.21
2449 2596 9.853555 CTAAAGCCTTCTGATAGATATGTGTAG 57.146 37.037 0.00 0.00 0.00 2.74
2464 2611 9.561069 AGATATGTGTAGTTTTCACTTTTCAGT 57.439 29.630 0.00 0.00 36.83 3.41
2475 2622 2.945456 ACTTTTCAGTGAGGGGGAAAC 58.055 47.619 0.00 0.00 30.86 2.78
2476 2623 2.514160 ACTTTTCAGTGAGGGGGAAACT 59.486 45.455 0.00 0.00 30.86 2.66
2477 2624 2.951229 TTTCAGTGAGGGGGAAACTC 57.049 50.000 0.00 0.00 35.55 3.01
2496 2643 5.615925 ACTCCCTATCCATTTGTGTACTC 57.384 43.478 0.00 0.00 0.00 2.59
2500 2647 5.249622 TCCCTATCCATTTGTGTACTCAACA 59.750 40.000 9.78 0.00 35.06 3.33
2515 2662 5.599999 ACTCAACACAAGTACTCTTCTGT 57.400 39.130 0.00 0.00 35.04 3.41
2519 2666 6.513180 TCAACACAAGTACTCTTCTGTTAGG 58.487 40.000 0.00 0.00 39.50 2.69
2523 2670 7.828712 ACACAAGTACTCTTCTGTTAGGTATC 58.171 38.462 0.00 0.00 30.73 2.24
2524 2671 7.670559 ACACAAGTACTCTTCTGTTAGGTATCT 59.329 37.037 0.00 0.00 30.73 1.98
2526 2673 9.750783 ACAAGTACTCTTCTGTTAGGTATCTAA 57.249 33.333 0.00 0.00 33.43 2.10
2556 2704 3.475566 TGCTCATTACTAGGTCCATGC 57.524 47.619 0.00 0.00 0.00 4.06
2562 2710 6.252599 TCATTACTAGGTCCATGCTTCATT 57.747 37.500 0.00 0.00 0.00 2.57
2563 2711 6.662755 TCATTACTAGGTCCATGCTTCATTT 58.337 36.000 0.00 0.00 0.00 2.32
2566 2714 4.666512 ACTAGGTCCATGCTTCATTTTGT 58.333 39.130 0.00 0.00 0.00 2.83
2567 2715 3.947910 AGGTCCATGCTTCATTTTGTG 57.052 42.857 0.00 0.00 0.00 3.33
2568 2716 2.564062 AGGTCCATGCTTCATTTTGTGG 59.436 45.455 0.00 0.00 0.00 4.17
2569 2717 2.340337 GTCCATGCTTCATTTTGTGGC 58.660 47.619 0.00 0.00 0.00 5.01
2570 2718 1.275856 TCCATGCTTCATTTTGTGGCC 59.724 47.619 0.00 0.00 0.00 5.36
2571 2719 1.676615 CCATGCTTCATTTTGTGGCCC 60.677 52.381 0.00 0.00 0.00 5.80
2572 2720 1.002201 CATGCTTCATTTTGTGGCCCA 59.998 47.619 0.00 0.00 0.00 5.36
2574 2722 1.698532 TGCTTCATTTTGTGGCCCAAT 59.301 42.857 0.00 0.00 31.81 3.16
2587 2741 1.413812 GGCCCAATTTCCTGCTTATGG 59.586 52.381 0.00 0.00 0.00 2.74
2588 2742 2.110578 GCCCAATTTCCTGCTTATGGT 58.889 47.619 0.00 0.00 0.00 3.55
2593 2747 5.291971 CCAATTTCCTGCTTATGGTTATGC 58.708 41.667 0.00 0.00 0.00 3.14
2620 2774 4.373156 AGGCCTCATGTACAGAAAGTTT 57.627 40.909 0.00 0.00 0.00 2.66
2645 2799 9.750125 TTACATGACTAACTCATACACATGATC 57.250 33.333 0.00 0.00 40.40 2.92
2646 2800 8.016301 ACATGACTAACTCATACACATGATCT 57.984 34.615 0.00 0.00 40.40 2.75
2671 2825 6.683090 TTTTGTTTGTTCGTTTGTTCAGAG 57.317 33.333 0.00 0.00 0.00 3.35
2672 2826 5.614923 TTGTTTGTTCGTTTGTTCAGAGA 57.385 34.783 0.00 0.00 0.00 3.10
2673 2827 4.965062 TGTTTGTTCGTTTGTTCAGAGAC 58.035 39.130 0.00 0.00 0.00 3.36
2674 2828 4.452795 TGTTTGTTCGTTTGTTCAGAGACA 59.547 37.500 0.00 0.00 0.00 3.41
2675 2829 5.049336 TGTTTGTTCGTTTGTTCAGAGACAA 60.049 36.000 0.00 0.00 37.73 3.18
2676 2830 4.593597 TGTTCGTTTGTTCAGAGACAAC 57.406 40.909 0.00 0.00 39.11 3.32
2677 2831 3.061563 TGTTCGTTTGTTCAGAGACAACG 59.938 43.478 0.00 0.00 39.11 4.10
2678 2832 1.591158 TCGTTTGTTCAGAGACAACGC 59.409 47.619 0.00 0.00 39.11 4.84
2679 2833 1.593006 CGTTTGTTCAGAGACAACGCT 59.407 47.619 0.00 0.00 39.11 5.07
2686 2840 4.037565 TGTTCAGAGACAACGCTTCTCTAA 59.962 41.667 9.93 0.00 46.71 2.10
2691 2845 5.809562 CAGAGACAACGCTTCTCTAATGAAT 59.190 40.000 9.93 0.00 46.71 2.57
2740 2894 3.074412 TGCACTTAAAACCAGCTAGCTC 58.926 45.455 16.15 0.00 0.00 4.09
2798 2970 3.947910 ACACATTCTTTGCATTCCAGG 57.052 42.857 0.00 0.00 0.00 4.45
2799 2971 2.028748 ACACATTCTTTGCATTCCAGGC 60.029 45.455 0.00 0.00 0.00 4.85
2800 2972 2.232941 CACATTCTTTGCATTCCAGGCT 59.767 45.455 0.00 0.00 0.00 4.58
2802 2974 4.082081 CACATTCTTTGCATTCCAGGCTTA 60.082 41.667 0.00 0.00 0.00 3.09
2803 2975 4.082026 ACATTCTTTGCATTCCAGGCTTAC 60.082 41.667 0.00 0.00 0.00 2.34
2804 2976 3.153369 TCTTTGCATTCCAGGCTTACA 57.847 42.857 0.00 0.00 0.00 2.41
2805 2977 3.084039 TCTTTGCATTCCAGGCTTACAG 58.916 45.455 0.00 0.00 0.00 2.74
2806 2978 1.176527 TTGCATTCCAGGCTTACAGC 58.823 50.000 0.00 0.00 41.46 4.40
2807 2979 0.329261 TGCATTCCAGGCTTACAGCT 59.671 50.000 0.00 0.00 41.99 4.24
2808 2980 1.559219 TGCATTCCAGGCTTACAGCTA 59.441 47.619 0.00 0.00 41.99 3.32
2809 2981 2.173356 TGCATTCCAGGCTTACAGCTAT 59.827 45.455 0.00 0.00 41.99 2.97
2810 2982 2.810852 GCATTCCAGGCTTACAGCTATC 59.189 50.000 0.00 0.00 41.99 2.08
2811 2983 3.495806 GCATTCCAGGCTTACAGCTATCT 60.496 47.826 0.00 0.00 41.99 1.98
2812 2984 4.712476 CATTCCAGGCTTACAGCTATCTT 58.288 43.478 0.00 0.00 41.99 2.40
2813 2985 4.844349 TTCCAGGCTTACAGCTATCTTT 57.156 40.909 0.00 0.00 41.99 2.52
2814 2986 4.142609 TCCAGGCTTACAGCTATCTTTG 57.857 45.455 0.00 0.00 41.99 2.77
2853 3031 8.165239 TGTTATTTATGGTAGGATGCATTCAC 57.835 34.615 7.96 3.48 0.00 3.18
2857 3035 6.698008 TTATGGTAGGATGCATTCACAAAG 57.302 37.500 7.96 0.00 0.00 2.77
2865 3052 4.682860 GGATGCATTCACAAAGTTCTGTTG 59.317 41.667 0.00 0.00 0.00 3.33
3046 3235 2.328473 GATTTTGTCGGGCAGCTTTTC 58.672 47.619 0.00 0.00 0.00 2.29
3189 3393 3.495331 TGTAAGACGGTAGTGTTGGGTA 58.505 45.455 0.00 0.00 35.37 3.69
3362 3566 3.426695 GCAAGCAAAGCTGATGTTATCGT 60.427 43.478 0.00 0.00 39.62 3.73
3392 3596 3.643792 GCTAGATCAAGAAGGCCCTAAGA 59.356 47.826 0.00 0.00 0.00 2.10
3398 3602 2.168458 AGAAGGCCCTAAGAGGAGTC 57.832 55.000 0.00 0.00 37.67 3.36
3470 3674 3.876914 CTGGTTTAACAGCTCAGACAACA 59.123 43.478 0.00 0.00 0.00 3.33
3534 3738 6.953520 ACCATTGTGATTTCCCTCTTATTTCA 59.046 34.615 0.00 0.00 0.00 2.69
3554 3758 4.122046 TCATCTGAAGCCATTCATGTACG 58.878 43.478 0.00 0.00 44.32 3.67
3836 4043 8.519799 TCTATTTCTTTTCAACCTTTCACAGT 57.480 30.769 0.00 0.00 0.00 3.55
4031 4238 4.672587 TCAGGTATGGCATTCTCAGTAC 57.327 45.455 4.78 0.00 0.00 2.73
4050 4257 4.844655 AGTACTGTTGGGACTTCTACCATT 59.155 41.667 0.00 0.00 36.48 3.16
4282 4492 7.041780 GCTGAGACAATGTCTTTTGAAGTTCTA 60.042 37.037 17.79 0.00 43.53 2.10
4298 4521 2.309528 TCTAGTGCCCTTATTGTGCG 57.690 50.000 0.00 0.00 0.00 5.34
4306 4529 2.743183 GCCCTTATTGTGCGAGTGATCT 60.743 50.000 0.00 0.00 0.00 2.75
4349 4577 4.615949 CATGAGAGCTGGACATACTACAC 58.384 47.826 0.00 0.00 0.00 2.90
4497 4727 7.503566 CCAGTGGAATATGATGAACAAGGTAAT 59.496 37.037 1.68 0.00 0.00 1.89
4525 4760 2.747446 ACAATCCATCAAACAGCCGTAC 59.253 45.455 0.00 0.00 0.00 3.67
4529 4764 4.481368 TCCATCAAACAGCCGTACTAAT 57.519 40.909 0.00 0.00 0.00 1.73
4557 4816 6.054941 ACATGAATCATATCGCCTTTGTGTA 58.945 36.000 0.00 0.00 0.00 2.90
4586 4845 5.617252 TCTCGACCCTTACTGTTCATTTTT 58.383 37.500 0.00 0.00 0.00 1.94
4587 4846 5.699458 TCTCGACCCTTACTGTTCATTTTTC 59.301 40.000 0.00 0.00 0.00 2.29
4758 5017 2.683211 ACCCCTGAAATGCTTCAAGT 57.317 45.000 0.00 0.00 41.05 3.16
5016 5280 6.010219 ACAATGGCTCACTTTATGGTAACTT 58.990 36.000 0.00 0.00 37.61 2.66
5019 5283 7.865706 ATGGCTCACTTTATGGTAACTTAAG 57.134 36.000 0.00 0.00 37.48 1.85
5248 5543 1.919918 TCTTGTTGCCTTTTTGTGCG 58.080 45.000 0.00 0.00 0.00 5.34
5282 5578 4.047142 GTCGAGTCTAACGTGACCTTTTT 58.953 43.478 2.63 0.00 37.66 1.94
5456 5763 7.547370 GCAGTAAGTTGAACAATCTCATACTCT 59.453 37.037 0.00 0.00 0.00 3.24
5457 5764 9.081997 CAGTAAGTTGAACAATCTCATACTCTC 57.918 37.037 0.00 0.00 0.00 3.20
5794 6122 2.473609 CACATTGTGCTGCACATGTTTC 59.526 45.455 33.25 6.76 44.16 2.78
5868 6196 9.587772 AGCGTATTATTTTCTATAGGTATGCTG 57.412 33.333 0.00 0.00 33.37 4.41
6014 6355 2.481471 GCCTTTACGCAGGGATGGC 61.481 63.158 0.00 0.00 34.01 4.40
6139 6487 7.202075 CCTTCTCCATTCTGATCTTCCTTGATA 60.202 40.741 0.00 0.00 0.00 2.15
6141 6489 7.677892 TCTCCATTCTGATCTTCCTTGATATG 58.322 38.462 0.00 0.00 0.00 1.78
6460 6809 1.102978 ATGCCGGCATCAAGGTAAAC 58.897 50.000 36.10 0.00 29.42 2.01
6461 6810 0.037590 TGCCGGCATCAAGGTAAACT 59.962 50.000 29.03 0.00 0.00 2.66
6466 6816 3.270027 CGGCATCAAGGTAAACTGATGA 58.730 45.455 14.56 0.00 37.12 2.92
6472 6822 6.763135 GCATCAAGGTAAACTGATGAGACATA 59.237 38.462 14.56 0.00 37.12 2.29
6483 6833 7.725818 ACTGATGAGACATACTTGCATATTG 57.274 36.000 0.00 0.00 0.00 1.90
6484 6834 7.278135 ACTGATGAGACATACTTGCATATTGT 58.722 34.615 0.00 0.00 0.00 2.71
6486 6836 8.510243 TGATGAGACATACTTGCATATTGTTT 57.490 30.769 0.00 0.00 0.00 2.83
6488 6838 9.443283 GATGAGACATACTTGCATATTGTTTTC 57.557 33.333 0.00 0.00 0.00 2.29
6489 6839 8.334263 TGAGACATACTTGCATATTGTTTTCA 57.666 30.769 0.00 0.00 0.00 2.69
6490 6840 8.959548 TGAGACATACTTGCATATTGTTTTCAT 58.040 29.630 0.00 0.00 0.00 2.57
6491 6841 9.443283 GAGACATACTTGCATATTGTTTTCATC 57.557 33.333 0.00 0.00 0.00 2.92
6492 6842 8.959548 AGACATACTTGCATATTGTTTTCATCA 58.040 29.630 0.00 0.00 0.00 3.07
6512 6871 7.674120 TCATCATTTAGACTATGAGGTGATGG 58.326 38.462 10.88 0.00 41.04 3.51
6624 6983 1.133792 CAGACCCTCACCAACAACCTT 60.134 52.381 0.00 0.00 0.00 3.50
6772 7132 2.791849 GCTCAGTGTCGATCGGTAAGTC 60.792 54.545 16.41 0.82 0.00 3.01
6773 7133 1.741706 TCAGTGTCGATCGGTAAGTCC 59.258 52.381 16.41 0.00 0.00 3.85
6800 7160 4.711355 CCCTGAAATCTTTGCCATCCTAAA 59.289 41.667 0.00 0.00 0.00 1.85
6804 7208 7.922811 CCTGAAATCTTTGCCATCCTAAATAAC 59.077 37.037 0.00 0.00 0.00 1.89
6805 7209 8.593945 TGAAATCTTTGCCATCCTAAATAACT 57.406 30.769 0.00 0.00 0.00 2.24
6806 7210 9.034800 TGAAATCTTTGCCATCCTAAATAACTT 57.965 29.630 0.00 0.00 0.00 2.66
6840 7244 4.036027 ACATGCTGAAAGTCTTGAACTGTG 59.964 41.667 0.00 0.00 38.58 3.66
6857 7261 9.554395 TTGAACTGTGATAAACATTTCTGACTA 57.446 29.630 9.16 0.00 44.63 2.59
7002 7407 4.717629 CGCAAGTCCGGCTCGTCA 62.718 66.667 0.00 0.00 0.00 4.35
7135 7556 4.637977 ACTGCTGCTCTAATAAAAAGGCTC 59.362 41.667 0.00 0.00 0.00 4.70
7136 7557 3.947834 TGCTGCTCTAATAAAAAGGCTCC 59.052 43.478 0.00 0.00 0.00 4.70
7137 7558 3.947834 GCTGCTCTAATAAAAAGGCTCCA 59.052 43.478 0.00 0.00 0.00 3.86
7138 7559 4.582240 GCTGCTCTAATAAAAAGGCTCCAT 59.418 41.667 0.00 0.00 0.00 3.41
7139 7560 5.506982 GCTGCTCTAATAAAAAGGCTCCATG 60.507 44.000 0.00 0.00 0.00 3.66
7140 7561 4.339247 TGCTCTAATAAAAAGGCTCCATGC 59.661 41.667 0.00 0.00 41.94 4.06
7149 7570 2.827642 GCTCCATGCCTGCTCACC 60.828 66.667 0.00 0.00 35.15 4.02
7150 7571 2.996395 CTCCATGCCTGCTCACCT 59.004 61.111 0.00 0.00 0.00 4.00
7155 7576 4.994471 TGCCTGCTCACCTGCACG 62.994 66.667 0.00 0.00 38.12 5.34
7184 7606 0.947244 CAGTTCACTGAAGGTGTGGC 59.053 55.000 0.14 0.00 46.59 5.01
7443 7890 3.138884 TCAGAATGTGCTTGCTTGGTA 57.861 42.857 0.00 0.00 37.40 3.25
7453 7900 2.155539 GCTTGCTTGGTAAACATTTGCG 59.844 45.455 0.00 0.00 0.00 4.85
7457 7904 2.155539 GCTTGGTAAACATTTGCGCAAG 59.844 45.455 23.68 15.27 35.89 4.01
7472 7919 3.443329 TGCGCAAGTTAATCATGGTCATT 59.557 39.130 8.16 0.00 41.68 2.57
7509 7958 9.515226 AATTAGATTTGGTTCTACTTGCAACTA 57.485 29.630 0.00 0.00 0.00 2.24
7659 8145 6.035866 CACTTCTTAGATGCAGCTCAGTTAAG 59.964 42.308 8.28 10.21 0.00 1.85
7660 8146 5.667539 TCTTAGATGCAGCTCAGTTAAGT 57.332 39.130 8.28 0.00 31.66 2.24
7661 8147 6.042638 TCTTAGATGCAGCTCAGTTAAGTT 57.957 37.500 8.28 0.00 31.66 2.66
7662 8148 7.170393 TCTTAGATGCAGCTCAGTTAAGTTA 57.830 36.000 8.28 0.00 31.66 2.24
7704 8202 4.551702 AGTGTGTGCATAACTATGACCA 57.448 40.909 0.77 0.00 35.75 4.02
7720 8218 7.826690 ACTATGACCAAAATCAACATAACCAC 58.173 34.615 0.00 0.00 30.82 4.16
7731 8229 5.996219 TCAACATAACCACTCAAACAATCG 58.004 37.500 0.00 0.00 0.00 3.34
7754 8277 4.054780 TCTACTTCGCCGCTATGAATTT 57.945 40.909 0.00 0.00 0.00 1.82
7784 8307 0.532573 GGACGATCTTGTGGCAGAGA 59.467 55.000 3.29 3.29 0.00 3.10
7785 8308 1.634702 GACGATCTTGTGGCAGAGAC 58.365 55.000 2.90 0.00 0.00 3.36
7802 8325 0.171231 GACGCTTGATCCAAAAGGCC 59.829 55.000 0.00 0.00 0.00 5.19
7813 8336 0.110192 CAAAAGGCCGAAACTCTCGC 60.110 55.000 0.00 0.00 46.71 5.03
7855 8378 1.003118 CTCCGTGGATTTCACCCTTGA 59.997 52.381 0.00 0.00 43.23 3.02
7880 8403 2.808206 GCCCGAGGGAACATCCGAT 61.808 63.158 13.28 0.00 37.43 4.18
7940 8478 6.954684 ACCTGGGTATATCTAGGTGATACAAG 59.045 42.308 19.55 0.00 41.76 3.16
7946 8489 9.298250 GGTATATCTAGGTGATACAAGACAAGA 57.702 37.037 10.06 0.00 40.12 3.02
8024 8567 5.171339 AGATGGTCTCTGTGTTAGCAAAT 57.829 39.130 0.00 0.00 31.12 2.32
8030 8573 6.816640 TGGTCTCTGTGTTAGCAAATACATAC 59.183 38.462 0.00 0.00 36.31 2.39
8031 8574 6.816640 GGTCTCTGTGTTAGCAAATACATACA 59.183 38.462 0.00 0.00 36.31 2.29
8032 8575 7.010552 GGTCTCTGTGTTAGCAAATACATACAG 59.989 40.741 0.00 0.00 36.31 2.74
8033 8576 6.535150 TCTCTGTGTTAGCAAATACATACAGC 59.465 38.462 0.00 0.00 36.31 4.40
8034 8577 6.169800 TCTGTGTTAGCAAATACATACAGCA 58.830 36.000 0.00 0.00 36.31 4.41
8035 8578 6.313658 TCTGTGTTAGCAAATACATACAGCAG 59.686 38.462 0.00 0.00 36.31 4.24
8036 8579 5.163764 TGTGTTAGCAAATACATACAGCAGC 60.164 40.000 0.00 0.00 32.45 5.25
8037 8580 5.065218 GTGTTAGCAAATACATACAGCAGCT 59.935 40.000 0.00 0.00 35.06 4.24
8038 8581 6.257849 GTGTTAGCAAATACATACAGCAGCTA 59.742 38.462 0.00 0.00 32.70 3.32
8039 8582 6.479990 TGTTAGCAAATACATACAGCAGCTAG 59.520 38.462 0.00 0.00 35.13 3.42
8040 8583 5.282055 AGCAAATACATACAGCAGCTAGA 57.718 39.130 0.00 0.00 0.00 2.43
8041 8584 5.295950 AGCAAATACATACAGCAGCTAGAG 58.704 41.667 0.00 0.00 0.00 2.43
8042 8585 4.084118 GCAAATACATACAGCAGCTAGAGC 60.084 45.833 0.00 0.00 42.49 4.09
8043 8586 4.944619 AATACATACAGCAGCTAGAGCA 57.055 40.909 4.01 0.00 45.16 4.26
8044 8587 5.480642 AATACATACAGCAGCTAGAGCAT 57.519 39.130 4.01 1.25 45.16 3.79
8045 8588 3.834489 ACATACAGCAGCTAGAGCATT 57.166 42.857 4.01 0.00 45.16 3.56
8046 8589 4.944619 ACATACAGCAGCTAGAGCATTA 57.055 40.909 4.01 1.79 45.16 1.90
8047 8590 4.626042 ACATACAGCAGCTAGAGCATTAC 58.374 43.478 4.01 0.00 45.16 1.89
8048 8591 4.343526 ACATACAGCAGCTAGAGCATTACT 59.656 41.667 4.01 0.00 45.16 2.24
8049 8592 5.536538 ACATACAGCAGCTAGAGCATTACTA 59.463 40.000 4.01 0.00 45.16 1.82
8050 8593 4.582701 ACAGCAGCTAGAGCATTACTAG 57.417 45.455 4.01 0.00 45.16 2.57
8051 8594 3.957497 ACAGCAGCTAGAGCATTACTAGT 59.043 43.478 0.00 0.00 45.16 2.57
8052 8595 5.133941 ACAGCAGCTAGAGCATTACTAGTA 58.866 41.667 4.01 0.00 45.16 1.82
8053 8596 5.240623 ACAGCAGCTAGAGCATTACTAGTAG 59.759 44.000 2.23 0.00 45.16 2.57
8054 8597 5.471797 CAGCAGCTAGAGCATTACTAGTAGA 59.528 44.000 3.59 0.00 45.16 2.59
8055 8598 6.016693 CAGCAGCTAGAGCATTACTAGTAGAA 60.017 42.308 3.59 0.00 45.16 2.10
8056 8599 6.016610 AGCAGCTAGAGCATTACTAGTAGAAC 60.017 42.308 3.59 0.00 45.16 3.01
8057 8600 6.674066 CAGCTAGAGCATTACTAGTAGAACC 58.326 44.000 3.59 0.00 45.16 3.62
8058 8601 5.771165 AGCTAGAGCATTACTAGTAGAACCC 59.229 44.000 3.59 0.00 45.16 4.11
8059 8602 5.771165 GCTAGAGCATTACTAGTAGAACCCT 59.229 44.000 3.59 2.74 39.36 4.34
8060 8603 6.072342 GCTAGAGCATTACTAGTAGAACCCTC 60.072 46.154 3.59 6.41 39.36 4.30
8061 8604 5.767670 AGAGCATTACTAGTAGAACCCTCA 58.232 41.667 3.59 0.00 0.00 3.86
8062 8605 6.195700 AGAGCATTACTAGTAGAACCCTCAA 58.804 40.000 3.59 0.00 0.00 3.02
8063 8606 6.668283 AGAGCATTACTAGTAGAACCCTCAAA 59.332 38.462 3.59 0.00 0.00 2.69
8064 8607 6.641474 AGCATTACTAGTAGAACCCTCAAAC 58.359 40.000 3.59 0.00 0.00 2.93
8065 8608 5.816258 GCATTACTAGTAGAACCCTCAAACC 59.184 44.000 3.59 0.00 0.00 3.27
8066 8609 6.346896 CATTACTAGTAGAACCCTCAAACCC 58.653 44.000 3.59 0.00 0.00 4.11
8067 8610 4.143406 ACTAGTAGAACCCTCAAACCCT 57.857 45.455 3.59 0.00 0.00 4.34
8068 8611 4.095211 ACTAGTAGAACCCTCAAACCCTC 58.905 47.826 3.59 0.00 0.00 4.30
8069 8612 2.986050 AGTAGAACCCTCAAACCCTCA 58.014 47.619 0.00 0.00 0.00 3.86
8070 8613 3.323775 AGTAGAACCCTCAAACCCTCAA 58.676 45.455 0.00 0.00 0.00 3.02
8071 8614 3.720002 AGTAGAACCCTCAAACCCTCAAA 59.280 43.478 0.00 0.00 0.00 2.69
8072 8615 2.945456 AGAACCCTCAAACCCTCAAAC 58.055 47.619 0.00 0.00 0.00 2.93
8073 8616 2.243736 AGAACCCTCAAACCCTCAAACA 59.756 45.455 0.00 0.00 0.00 2.83
8074 8617 2.067365 ACCCTCAAACCCTCAAACAC 57.933 50.000 0.00 0.00 0.00 3.32
8075 8618 1.569072 ACCCTCAAACCCTCAAACACT 59.431 47.619 0.00 0.00 0.00 3.55
8076 8619 2.024369 ACCCTCAAACCCTCAAACACTT 60.024 45.455 0.00 0.00 0.00 3.16
8077 8620 2.362077 CCCTCAAACCCTCAAACACTTG 59.638 50.000 0.00 0.00 0.00 3.16
8078 8621 3.023832 CCTCAAACCCTCAAACACTTGT 58.976 45.455 0.00 0.00 33.94 3.16
8079 8622 4.204012 CCTCAAACCCTCAAACACTTGTA 58.796 43.478 0.00 0.00 33.94 2.41
8080 8623 4.275936 CCTCAAACCCTCAAACACTTGTAG 59.724 45.833 0.00 0.00 33.94 2.74
8081 8624 3.630312 TCAAACCCTCAAACACTTGTAGC 59.370 43.478 0.00 0.00 33.94 3.58
8082 8625 3.290948 AACCCTCAAACACTTGTAGCA 57.709 42.857 0.00 0.00 33.94 3.49
8083 8626 2.851195 ACCCTCAAACACTTGTAGCAG 58.149 47.619 0.00 0.00 33.94 4.24
8084 8627 2.172717 ACCCTCAAACACTTGTAGCAGT 59.827 45.455 0.00 0.00 33.94 4.40
8085 8628 3.214328 CCCTCAAACACTTGTAGCAGTT 58.786 45.455 0.00 0.00 33.94 3.16
8086 8629 3.632145 CCCTCAAACACTTGTAGCAGTTT 59.368 43.478 0.00 0.00 34.78 2.66
8087 8630 4.097892 CCCTCAAACACTTGTAGCAGTTTT 59.902 41.667 0.00 0.00 32.34 2.43
8088 8631 5.298276 CCCTCAAACACTTGTAGCAGTTTTA 59.702 40.000 0.00 0.00 32.34 1.52
8089 8632 6.183360 CCCTCAAACACTTGTAGCAGTTTTAA 60.183 38.462 0.00 0.00 32.34 1.52
8090 8633 6.912591 CCTCAAACACTTGTAGCAGTTTTAAG 59.087 38.462 0.00 0.00 32.34 1.85
8091 8634 7.201696 CCTCAAACACTTGTAGCAGTTTTAAGA 60.202 37.037 0.00 0.00 32.34 2.10
8092 8635 7.693952 TCAAACACTTGTAGCAGTTTTAAGAG 58.306 34.615 0.00 0.00 32.34 2.85
8093 8636 7.335924 TCAAACACTTGTAGCAGTTTTAAGAGT 59.664 33.333 0.00 0.00 32.34 3.24
8094 8637 7.625828 AACACTTGTAGCAGTTTTAAGAGTT 57.374 32.000 0.00 0.00 30.86 3.01
8095 8638 7.016361 ACACTTGTAGCAGTTTTAAGAGTTG 57.984 36.000 0.00 0.00 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 4.759205 ATCGGGCTTTGGTGGGCC 62.759 66.667 0.00 0.00 46.89 5.80
28 29 2.679996 AATCGGGCTTTGGTGGGC 60.680 61.111 0.00 0.00 0.00 5.36
29 30 0.897863 TTGAATCGGGCTTTGGTGGG 60.898 55.000 0.00 0.00 0.00 4.61
30 31 0.965439 TTTGAATCGGGCTTTGGTGG 59.035 50.000 0.00 0.00 0.00 4.61
31 32 2.810439 TTTTGAATCGGGCTTTGGTG 57.190 45.000 0.00 0.00 0.00 4.17
48 49 2.600470 GCTCGGGCCTGGGTTTTT 60.600 61.111 14.54 0.00 0.00 1.94
78 79 0.741927 ATTTTTAGGCCCGACGGTCG 60.742 55.000 22.88 22.88 39.51 4.79
79 80 1.131693 CAATTTTTAGGCCCGACGGTC 59.868 52.381 13.94 0.00 0.00 4.79
80 81 1.170442 CAATTTTTAGGCCCGACGGT 58.830 50.000 13.94 0.00 0.00 4.83
81 82 0.454196 CCAATTTTTAGGCCCGACGG 59.546 55.000 6.99 6.99 0.00 4.79
82 83 0.454196 CCCAATTTTTAGGCCCGACG 59.546 55.000 0.00 0.00 0.00 5.12
83 84 0.174845 GCCCAATTTTTAGGCCCGAC 59.825 55.000 0.00 0.00 41.00 4.79
84 85 2.585876 GCCCAATTTTTAGGCCCGA 58.414 52.632 0.00 0.00 41.00 5.14
88 89 1.134699 GCTCAGGCCCAATTTTTAGGC 60.135 52.381 0.00 0.00 46.37 3.93
89 90 2.967599 GCTCAGGCCCAATTTTTAGG 57.032 50.000 0.00 0.00 0.00 2.69
101 102 4.864334 CATGGACCGGGCTCAGGC 62.864 72.222 7.57 0.00 37.82 4.85
102 103 3.083349 TCATGGACCGGGCTCAGG 61.083 66.667 7.57 5.55 0.00 3.86
103 104 2.503061 CTCATGGACCGGGCTCAG 59.497 66.667 7.57 0.00 0.00 3.35
104 105 2.871795 TAGCTCATGGACCGGGCTCA 62.872 60.000 7.57 3.51 34.88 4.26
105 106 1.686325 TTAGCTCATGGACCGGGCTC 61.686 60.000 7.57 0.00 34.88 4.70
106 107 1.271840 TTTAGCTCATGGACCGGGCT 61.272 55.000 7.57 5.70 37.08 5.19
107 108 0.393808 TTTTAGCTCATGGACCGGGC 60.394 55.000 6.32 0.21 0.00 6.13
108 109 1.668419 CTTTTAGCTCATGGACCGGG 58.332 55.000 6.32 0.00 0.00 5.73
109 110 1.017387 GCTTTTAGCTCATGGACCGG 58.983 55.000 0.00 0.00 38.45 5.28
110 111 1.017387 GGCTTTTAGCTCATGGACCG 58.983 55.000 0.00 0.00 41.99 4.79
111 112 2.019984 CAGGCTTTTAGCTCATGGACC 58.980 52.381 0.00 0.00 41.99 4.46
112 113 1.403323 GCAGGCTTTTAGCTCATGGAC 59.597 52.381 0.00 0.00 41.99 4.02
113 114 1.683011 GGCAGGCTTTTAGCTCATGGA 60.683 52.381 0.00 0.00 41.99 3.41
114 115 0.743097 GGCAGGCTTTTAGCTCATGG 59.257 55.000 0.00 0.00 41.99 3.66
115 116 0.379669 CGGCAGGCTTTTAGCTCATG 59.620 55.000 0.00 0.00 41.99 3.07
116 117 0.749454 CCGGCAGGCTTTTAGCTCAT 60.749 55.000 0.00 0.00 41.99 2.90
117 118 1.377202 CCGGCAGGCTTTTAGCTCA 60.377 57.895 0.00 0.00 41.99 4.26
118 119 2.115291 CCCGGCAGGCTTTTAGCTC 61.115 63.158 0.00 0.00 41.99 4.09
119 120 2.044946 CCCGGCAGGCTTTTAGCT 60.045 61.111 0.00 0.00 41.99 3.32
131 132 3.103091 ATTAACGAGGAGGCCCGGC 62.103 63.158 0.00 0.00 37.58 6.13
132 133 1.227556 CATTAACGAGGAGGCCCGG 60.228 63.158 0.00 0.00 37.58 5.73
133 134 1.887707 GCATTAACGAGGAGGCCCG 60.888 63.158 0.00 0.00 37.58 6.13
134 135 1.887707 CGCATTAACGAGGAGGCCC 60.888 63.158 0.00 0.00 34.06 5.80
135 136 2.534903 GCGCATTAACGAGGAGGCC 61.535 63.158 0.30 0.00 34.06 5.19
136 137 2.871427 CGCGCATTAACGAGGAGGC 61.871 63.158 8.75 0.00 34.06 4.70
137 138 0.804544 TTCGCGCATTAACGAGGAGG 60.805 55.000 8.75 0.00 39.81 4.30
138 139 1.209128 ATTCGCGCATTAACGAGGAG 58.791 50.000 8.75 0.00 39.81 3.69
139 140 2.495409 TATTCGCGCATTAACGAGGA 57.505 45.000 8.75 0.00 39.81 3.71
140 141 2.729360 TCATATTCGCGCATTAACGAGG 59.271 45.455 8.75 0.00 39.81 4.63
141 142 3.711425 GTCATATTCGCGCATTAACGAG 58.289 45.455 8.75 0.00 39.81 4.18
142 143 2.152301 CGTCATATTCGCGCATTAACGA 59.848 45.455 8.75 0.00 36.32 3.85
143 144 2.472583 CGTCATATTCGCGCATTAACG 58.527 47.619 8.75 3.50 0.00 3.18
144 145 2.411031 CCCGTCATATTCGCGCATTAAC 60.411 50.000 8.75 0.00 0.00 2.01
145 146 1.795872 CCCGTCATATTCGCGCATTAA 59.204 47.619 8.75 0.00 0.00 1.40
146 147 1.424403 CCCGTCATATTCGCGCATTA 58.576 50.000 8.75 0.00 0.00 1.90
147 148 1.841663 GCCCGTCATATTCGCGCATT 61.842 55.000 8.75 0.00 33.24 3.56
148 149 2.317609 GCCCGTCATATTCGCGCAT 61.318 57.895 8.75 0.00 33.24 4.73
149 150 2.964925 GCCCGTCATATTCGCGCA 60.965 61.111 8.75 0.00 33.24 6.09
150 151 3.712881 GGCCCGTCATATTCGCGC 61.713 66.667 0.00 0.00 0.00 6.86
151 152 2.029073 AGGCCCGTCATATTCGCG 59.971 61.111 0.00 0.00 0.00 5.87
152 153 1.961277 CCAGGCCCGTCATATTCGC 60.961 63.158 0.00 0.00 0.00 4.70
153 154 1.961277 GCCAGGCCCGTCATATTCG 60.961 63.158 0.00 0.00 0.00 3.34
154 155 1.600916 GGCCAGGCCCGTCATATTC 60.601 63.158 21.62 0.00 44.06 1.75
155 156 2.515901 GGCCAGGCCCGTCATATT 59.484 61.111 21.62 0.00 44.06 1.28
171 172 1.571919 CTAGATTTCAAGCCCGACGG 58.428 55.000 6.99 6.99 0.00 4.79
172 173 1.571919 CCTAGATTTCAAGCCCGACG 58.428 55.000 0.00 0.00 0.00 5.12
173 174 1.300481 GCCTAGATTTCAAGCCCGAC 58.700 55.000 0.00 0.00 0.00 4.79
174 175 0.180406 GGCCTAGATTTCAAGCCCGA 59.820 55.000 0.00 0.00 37.66 5.14
175 176 0.181350 AGGCCTAGATTTCAAGCCCG 59.819 55.000 1.29 0.00 45.00 6.13
176 177 1.212935 TCAGGCCTAGATTTCAAGCCC 59.787 52.381 3.98 0.00 45.00 5.19
177 178 2.570135 CTCAGGCCTAGATTTCAAGCC 58.430 52.381 3.98 0.00 44.20 4.35
178 179 1.946081 GCTCAGGCCTAGATTTCAAGC 59.054 52.381 3.98 0.81 0.00 4.01
198 199 4.820744 CCTTGTCCATGGGCCGGG 62.821 72.222 15.27 12.08 0.00 5.73
199 200 3.995506 GACCTTGTCCATGGGCCGG 62.996 68.421 15.27 16.66 0.00 6.13
200 201 2.438434 GACCTTGTCCATGGGCCG 60.438 66.667 15.27 4.70 0.00 6.13
201 202 2.438434 CGACCTTGTCCATGGGCC 60.438 66.667 15.27 4.53 30.24 5.80
202 203 2.438434 CCGACCTTGTCCATGGGC 60.438 66.667 10.20 10.20 0.00 5.36
203 204 2.272146 CCCGACCTTGTCCATGGG 59.728 66.667 13.02 0.00 0.00 4.00
204 205 2.438434 GCCCGACCTTGTCCATGG 60.438 66.667 4.97 4.97 0.00 3.66
205 206 2.438434 GGCCCGACCTTGTCCATG 60.438 66.667 0.00 0.00 34.51 3.66
206 207 4.096003 CGGCCCGACCTTGTCCAT 62.096 66.667 0.00 0.00 35.61 3.41
215 216 3.744719 GAAAAAGCCCGGCCCGAC 61.745 66.667 3.71 0.00 0.00 4.79
224 225 3.744719 GGTCGGCCCGAAAAAGCC 61.745 66.667 7.77 0.00 46.17 4.35
253 254 0.846015 TGATTAGACCTGGCCATGGG 59.154 55.000 20.97 16.10 0.00 4.00
254 255 1.212688 TGTGATTAGACCTGGCCATGG 59.787 52.381 5.51 13.05 0.00 3.66
255 256 2.715749 TGTGATTAGACCTGGCCATG 57.284 50.000 5.51 6.06 0.00 3.66
256 257 2.684927 GCTTGTGATTAGACCTGGCCAT 60.685 50.000 5.51 0.00 0.00 4.40
257 258 1.340017 GCTTGTGATTAGACCTGGCCA 60.340 52.381 4.71 4.71 0.00 5.36
258 259 1.065126 AGCTTGTGATTAGACCTGGCC 60.065 52.381 0.00 0.00 0.00 5.36
259 260 2.409948 AGCTTGTGATTAGACCTGGC 57.590 50.000 0.00 0.00 0.00 4.85
260 261 4.202202 CCTCTAGCTTGTGATTAGACCTGG 60.202 50.000 0.00 0.00 0.00 4.45
261 262 4.646945 TCCTCTAGCTTGTGATTAGACCTG 59.353 45.833 0.00 0.00 0.00 4.00
262 263 4.873010 TCCTCTAGCTTGTGATTAGACCT 58.127 43.478 0.00 0.00 0.00 3.85
263 264 4.038642 CCTCCTCTAGCTTGTGATTAGACC 59.961 50.000 0.00 0.00 0.00 3.85
264 265 4.890581 TCCTCCTCTAGCTTGTGATTAGAC 59.109 45.833 0.00 0.00 0.00 2.59
265 266 5.130705 TCCTCCTCTAGCTTGTGATTAGA 57.869 43.478 0.00 0.00 0.00 2.10
266 267 5.362430 AGTTCCTCCTCTAGCTTGTGATTAG 59.638 44.000 0.00 0.00 0.00 1.73
267 268 5.273208 AGTTCCTCCTCTAGCTTGTGATTA 58.727 41.667 0.00 0.00 0.00 1.75
268 269 4.100373 AGTTCCTCCTCTAGCTTGTGATT 58.900 43.478 0.00 0.00 0.00 2.57
517 521 1.674057 CACACACACCCTCCTCCTC 59.326 63.158 0.00 0.00 0.00 3.71
518 522 1.843376 CCACACACACCCTCCTCCT 60.843 63.158 0.00 0.00 0.00 3.69
519 523 2.750350 CCACACACACCCTCCTCC 59.250 66.667 0.00 0.00 0.00 4.30
615 624 2.055689 TTGGGGCTGTGAGTGTGGAG 62.056 60.000 0.00 0.00 0.00 3.86
629 638 2.692741 GAGGAGGAGGGGTTGGGG 60.693 72.222 0.00 0.00 0.00 4.96
633 642 0.338120 CAGAGAGAGGAGGAGGGGTT 59.662 60.000 0.00 0.00 0.00 4.11
634 643 0.553862 TCAGAGAGAGGAGGAGGGGT 60.554 60.000 0.00 0.00 0.00 4.95
635 644 0.633921 TTCAGAGAGAGGAGGAGGGG 59.366 60.000 0.00 0.00 0.00 4.79
636 645 1.411501 CCTTCAGAGAGAGGAGGAGGG 60.412 61.905 0.00 0.00 0.00 4.30
637 646 1.568597 TCCTTCAGAGAGAGGAGGAGG 59.431 57.143 0.00 0.00 30.04 4.30
638 647 3.023832 GTTCCTTCAGAGAGAGGAGGAG 58.976 54.545 0.00 0.00 35.28 3.69
639 648 2.380249 TGTTCCTTCAGAGAGAGGAGGA 59.620 50.000 0.00 0.00 32.58 3.71
640 649 2.760092 CTGTTCCTTCAGAGAGAGGAGG 59.240 54.545 0.00 0.00 37.61 4.30
642 651 3.816398 TCTGTTCCTTCAGAGAGAGGA 57.184 47.619 0.00 0.00 39.20 3.71
649 658 0.037882 CGCTGCTCTGTTCCTTCAGA 60.038 55.000 0.00 0.00 41.40 3.27
650 659 0.037882 TCGCTGCTCTGTTCCTTCAG 60.038 55.000 0.00 0.00 36.85 3.02
651 660 0.037882 CTCGCTGCTCTGTTCCTTCA 60.038 55.000 0.00 0.00 0.00 3.02
655 664 0.179140 CTCTCTCGCTGCTCTGTTCC 60.179 60.000 0.00 0.00 0.00 3.62
668 677 1.687563 GCTACAGGAGTCCCTCTCTC 58.312 60.000 5.25 0.00 42.02 3.20
669 678 0.260523 GGCTACAGGAGTCCCTCTCT 59.739 60.000 5.25 0.00 42.02 3.10
691 714 2.813200 GGGGTCGATCCGAACTCC 59.187 66.667 9.04 0.00 43.71 3.85
692 715 1.328430 AAGGGGGTCGATCCGAACTC 61.328 60.000 9.04 0.00 44.17 3.01
693 716 1.305887 AAGGGGGTCGATCCGAACT 60.306 57.895 9.04 3.88 43.71 3.01
694 717 1.143401 GAAGGGGGTCGATCCGAAC 59.857 63.158 9.04 1.24 43.47 3.95
695 718 1.001248 AGAAGGGGGTCGATCCGAA 59.999 57.895 9.04 0.00 37.72 4.30
696 719 1.455217 GAGAAGGGGGTCGATCCGA 60.455 63.158 9.04 0.00 37.00 4.55
697 720 2.499827 GGAGAAGGGGGTCGATCCG 61.500 68.421 9.04 0.00 37.00 4.18
698 721 2.499827 CGGAGAAGGGGGTCGATCC 61.500 68.421 6.02 6.02 0.00 3.36
699 722 2.499827 CCGGAGAAGGGGGTCGATC 61.500 68.421 0.00 0.00 0.00 3.69
700 723 2.444140 CCGGAGAAGGGGGTCGAT 60.444 66.667 0.00 0.00 0.00 3.59
708 731 3.984193 CTTGGCTGGCCGGAGAAGG 62.984 68.421 18.31 0.00 39.42 3.46
709 732 2.437359 CTTGGCTGGCCGGAGAAG 60.437 66.667 18.31 12.16 39.42 2.85
710 733 4.033776 CCTTGGCTGGCCGGAGAA 62.034 66.667 18.31 5.58 39.42 2.87
720 743 1.972660 GCCCTATCGTCACCTTGGCT 61.973 60.000 0.00 0.00 34.61 4.75
737 760 1.169034 GGAGAGGAAATGCGATGGCC 61.169 60.000 0.00 0.00 38.85 5.36
764 799 0.179124 AGAGAAGAGACGCGAATGGC 60.179 55.000 15.93 0.00 38.69 4.40
765 800 1.923204 CAAGAGAAGAGACGCGAATGG 59.077 52.381 15.93 0.00 0.00 3.16
766 801 1.322936 GCAAGAGAAGAGACGCGAATG 59.677 52.381 15.93 0.00 0.00 2.67
767 802 1.634702 GCAAGAGAAGAGACGCGAAT 58.365 50.000 15.93 0.00 0.00 3.34
768 803 0.729478 CGCAAGAGAAGAGACGCGAA 60.729 55.000 15.93 0.00 45.17 4.70
769 804 1.154207 CGCAAGAGAAGAGACGCGA 60.154 57.895 15.93 0.00 45.17 5.87
770 805 2.155194 CCGCAAGAGAAGAGACGCG 61.155 63.158 3.53 3.53 42.21 6.01
771 806 2.448705 GCCGCAAGAGAAGAGACGC 61.449 63.158 0.00 0.00 43.02 5.19
772 807 1.807573 GGCCGCAAGAGAAGAGACG 60.808 63.158 0.00 0.00 43.02 4.18
773 808 1.807573 CGGCCGCAAGAGAAGAGAC 60.808 63.158 14.67 0.00 43.02 3.36
774 809 2.573869 CGGCCGCAAGAGAAGAGA 59.426 61.111 14.67 0.00 43.02 3.10
775 810 2.510238 CCGGCCGCAAGAGAAGAG 60.510 66.667 22.85 0.00 43.02 2.85
776 811 3.311110 ACCGGCCGCAAGAGAAGA 61.311 61.111 22.85 0.00 43.02 2.87
777 812 3.121030 CACCGGCCGCAAGAGAAG 61.121 66.667 22.85 5.83 43.02 2.85
778 813 4.697756 CCACCGGCCGCAAGAGAA 62.698 66.667 22.85 0.00 43.02 2.87
888 928 6.035005 TCGAAGCAAACAAGATATTTCTCTCG 59.965 38.462 0.00 0.00 0.00 4.04
986 1031 1.227350 CCCATGCTCGCTCGATCAA 60.227 57.895 0.00 0.00 0.00 2.57
1035 1080 4.776322 CCGCCGCCACCTTCATCA 62.776 66.667 0.00 0.00 0.00 3.07
1137 1185 3.773154 GAGCCTCCTCCCCCTCCT 61.773 72.222 0.00 0.00 31.68 3.69
1404 1467 4.517703 GAGACCGAGTCGCCGTCG 62.518 72.222 7.12 0.00 37.67 5.12
1569 1632 1.335132 GGTGCAGGTCCTTATCCGGA 61.335 60.000 6.61 6.61 0.00 5.14
1575 1638 0.892755 CGTACTGGTGCAGGTCCTTA 59.107 55.000 0.00 0.00 35.51 2.69
1809 1872 4.161565 ACAGAGGATTAAGTAACCATCGCA 59.838 41.667 0.00 0.00 0.00 5.10
1812 1875 7.923414 ACAAACAGAGGATTAAGTAACCATC 57.077 36.000 0.00 0.00 0.00 3.51
1816 1879 9.233232 CAACAAACAAACAGAGGATTAAGTAAC 57.767 33.333 0.00 0.00 0.00 2.50
1818 1881 7.469456 GCCAACAAACAAACAGAGGATTAAGTA 60.469 37.037 0.00 0.00 0.00 2.24
1819 1882 6.682861 GCCAACAAACAAACAGAGGATTAAGT 60.683 38.462 0.00 0.00 0.00 2.24
1820 1883 5.691754 GCCAACAAACAAACAGAGGATTAAG 59.308 40.000 0.00 0.00 0.00 1.85
1822 1885 4.646945 TGCCAACAAACAAACAGAGGATTA 59.353 37.500 0.00 0.00 0.00 1.75
1849 1940 4.522114 TGGAATGAACACAGTCAGAAACA 58.478 39.130 0.00 0.00 31.45 2.83
1866 1957 5.012046 TCTCACGCCTACATTATCATGGAAT 59.988 40.000 0.00 0.00 34.27 3.01
1868 1959 3.895041 TCTCACGCCTACATTATCATGGA 59.105 43.478 0.00 0.00 34.27 3.41
1870 1961 4.021981 TCCTCTCACGCCTACATTATCATG 60.022 45.833 0.00 0.00 36.34 3.07
1871 1962 4.021894 GTCCTCTCACGCCTACATTATCAT 60.022 45.833 0.00 0.00 0.00 2.45
1876 1967 0.824759 GGTCCTCTCACGCCTACATT 59.175 55.000 0.00 0.00 0.00 2.71
1879 1970 0.456628 GAAGGTCCTCTCACGCCTAC 59.543 60.000 0.00 0.00 0.00 3.18
2006 2097 4.687215 GGCAGCTCACGCAGGACA 62.687 66.667 0.00 0.00 39.10 4.02
2067 2162 7.891183 CACCCAGATCTCCTACTAGTATTACAT 59.109 40.741 2.33 0.00 0.00 2.29
2084 2179 3.604582 CTTTCAGTCCTTCACCCAGATC 58.395 50.000 0.00 0.00 0.00 2.75
2085 2180 2.307098 CCTTTCAGTCCTTCACCCAGAT 59.693 50.000 0.00 0.00 0.00 2.90
2087 2182 1.699634 TCCTTTCAGTCCTTCACCCAG 59.300 52.381 0.00 0.00 0.00 4.45
2097 2196 5.371526 TGGAAGCATATCATCCTTTCAGTC 58.628 41.667 0.00 0.00 33.80 3.51
2111 2210 3.117398 AGAGGGCAATTCATGGAAGCATA 60.117 43.478 4.41 0.00 0.00 3.14
2128 2227 3.244009 CCATATGGCGCATATCTAGAGGG 60.244 52.174 9.29 3.91 35.18 4.30
2132 2231 3.066760 TCGTCCATATGGCGCATATCTAG 59.933 47.826 24.75 2.91 35.18 2.43
2151 2250 0.170561 CCGGTGAGAAGAACGATCGT 59.829 55.000 16.60 16.60 0.00 3.73
2244 2343 1.194218 TGAGCGACAATCCCATCTGA 58.806 50.000 0.00 0.00 0.00 3.27
2283 2383 6.561614 AGCATACAAGCATTCATGAGAAAAG 58.438 36.000 0.00 0.00 37.29 2.27
2287 2387 6.993902 TGATTAGCATACAAGCATTCATGAGA 59.006 34.615 0.00 0.00 36.85 3.27
2297 2397 8.616076 GGGAATACATATGATTAGCATACAAGC 58.384 37.037 10.38 0.00 42.01 4.01
2298 2398 9.896645 AGGGAATACATATGATTAGCATACAAG 57.103 33.333 10.38 0.00 42.01 3.16
2303 2403 8.094284 TGCTAGGGAATACATATGATTAGCAT 57.906 34.615 10.38 0.00 36.89 3.79
2309 2409 9.415008 CTAGTACTGCTAGGGAATACATATGAT 57.585 37.037 10.38 0.00 42.63 2.45
2310 2410 8.809468 CTAGTACTGCTAGGGAATACATATGA 57.191 38.462 10.38 0.00 42.63 2.15
2325 2425 5.337330 GGGTTCACAATGTACTAGTACTGCT 60.337 44.000 28.56 13.98 37.00 4.24
2326 2426 4.868734 GGGTTCACAATGTACTAGTACTGC 59.131 45.833 28.56 8.12 37.00 4.40
2327 2427 5.100259 CGGGTTCACAATGTACTAGTACTG 58.900 45.833 28.56 22.35 37.00 2.74
2332 2475 2.930040 CAGCGGGTTCACAATGTACTAG 59.070 50.000 0.00 0.00 0.00 2.57
2333 2476 2.563620 TCAGCGGGTTCACAATGTACTA 59.436 45.455 0.00 0.00 0.00 1.82
2341 2484 3.153024 GCTAATCAGCGGGTTCACA 57.847 52.632 0.00 0.00 38.22 3.58
2350 2493 3.129988 AGCAATTTCCACTGCTAATCAGC 59.870 43.478 0.00 0.00 46.92 4.26
2363 2510 7.064847 TGTGAATATGAAAATGCAGCAATTTCC 59.935 33.333 26.31 14.74 33.74 3.13
2407 2554 6.064717 AGGCTTTAGTTCTGAATGTTCTGTT 58.935 36.000 0.00 0.00 0.00 3.16
2426 2573 7.847711 ACTACACATATCTATCAGAAGGCTT 57.152 36.000 0.00 0.00 0.00 4.35
2428 2575 8.894768 AAAACTACACATATCTATCAGAAGGC 57.105 34.615 0.00 0.00 0.00 4.35
2438 2585 9.561069 ACTGAAAAGTGAAAACTACACATATCT 57.439 29.630 0.00 0.00 40.25 1.98
2445 2592 5.588648 CCCTCACTGAAAAGTGAAAACTACA 59.411 40.000 9.64 0.00 46.60 2.74
2446 2593 5.008712 CCCCTCACTGAAAAGTGAAAACTAC 59.991 44.000 9.64 0.00 46.60 2.73
2449 2596 3.068165 CCCCCTCACTGAAAAGTGAAAAC 59.932 47.826 9.64 0.00 46.60 2.43
2456 2603 3.149981 GAGTTTCCCCCTCACTGAAAAG 58.850 50.000 0.00 0.00 30.47 2.27
2457 2604 2.158519 GGAGTTTCCCCCTCACTGAAAA 60.159 50.000 0.00 0.00 30.47 2.29
2458 2605 1.423921 GGAGTTTCCCCCTCACTGAAA 59.576 52.381 0.00 0.00 0.00 2.69
2459 2606 1.064825 GGAGTTTCCCCCTCACTGAA 58.935 55.000 0.00 0.00 0.00 3.02
2460 2607 2.773458 GGAGTTTCCCCCTCACTGA 58.227 57.895 0.00 0.00 0.00 3.41
2470 2617 4.600062 ACACAAATGGATAGGGAGTTTCC 58.400 43.478 0.00 0.00 35.23 3.13
2471 2618 6.415573 AGTACACAAATGGATAGGGAGTTTC 58.584 40.000 0.00 0.00 0.00 2.78
2472 2619 6.012858 TGAGTACACAAATGGATAGGGAGTTT 60.013 38.462 0.00 0.00 0.00 2.66
2473 2620 5.487488 TGAGTACACAAATGGATAGGGAGTT 59.513 40.000 0.00 0.00 0.00 3.01
2474 2621 5.030147 TGAGTACACAAATGGATAGGGAGT 58.970 41.667 0.00 0.00 0.00 3.85
2475 2622 5.614324 TGAGTACACAAATGGATAGGGAG 57.386 43.478 0.00 0.00 0.00 4.30
2476 2623 5.249622 TGTTGAGTACACAAATGGATAGGGA 59.750 40.000 7.33 0.00 0.00 4.20
2477 2624 5.496556 TGTTGAGTACACAAATGGATAGGG 58.503 41.667 7.33 0.00 0.00 3.53
2491 2638 6.994868 CAGAAGAGTACTTGTGTTGAGTAC 57.005 41.667 0.00 6.36 46.20 2.73
2500 2647 9.750783 TTAGATACCTAACAGAAGAGTACTTGT 57.249 33.333 0.00 0.00 31.86 3.16
2539 2687 5.894298 ATGAAGCATGGACCTAGTAATGA 57.106 39.130 0.00 0.00 0.00 2.57
2544 2692 4.460382 CACAAAATGAAGCATGGACCTAGT 59.540 41.667 0.00 0.00 0.00 2.57
2545 2693 4.142315 CCACAAAATGAAGCATGGACCTAG 60.142 45.833 0.00 0.00 0.00 3.02
2547 2695 2.564062 CCACAAAATGAAGCATGGACCT 59.436 45.455 0.00 0.00 0.00 3.85
2548 2696 2.932187 GCCACAAAATGAAGCATGGACC 60.932 50.000 0.00 0.00 0.00 4.46
2552 2700 1.002201 TGGGCCACAAAATGAAGCATG 59.998 47.619 0.00 0.00 0.00 4.06
2556 2704 3.752747 GGAAATTGGGCCACAAAATGAAG 59.247 43.478 5.23 0.00 43.46 3.02
2562 2710 0.396060 GCAGGAAATTGGGCCACAAA 59.604 50.000 5.23 0.00 43.46 2.83
2563 2711 0.471591 AGCAGGAAATTGGGCCACAA 60.472 50.000 5.23 7.14 44.54 3.33
2566 2714 2.109774 CATAAGCAGGAAATTGGGCCA 58.890 47.619 0.00 0.00 0.00 5.36
2567 2715 1.413812 CCATAAGCAGGAAATTGGGCC 59.586 52.381 0.00 0.00 0.00 5.80
2568 2716 2.110578 ACCATAAGCAGGAAATTGGGC 58.889 47.619 0.00 0.00 0.00 5.36
2569 2717 5.739935 GCATAACCATAAGCAGGAAATTGGG 60.740 44.000 0.00 0.00 0.00 4.12
2570 2718 5.291971 GCATAACCATAAGCAGGAAATTGG 58.708 41.667 0.00 0.00 0.00 3.16
2571 2719 5.163426 TGGCATAACCATAAGCAGGAAATTG 60.163 40.000 0.00 0.00 46.36 2.32
2572 2720 4.961730 TGGCATAACCATAAGCAGGAAATT 59.038 37.500 0.00 0.00 46.36 1.82
2574 2722 3.974719 TGGCATAACCATAAGCAGGAAA 58.025 40.909 0.00 0.00 46.36 3.13
2593 2747 4.422073 TCTGTACATGAGGCCTTAATGG 57.578 45.455 25.20 11.89 39.35 3.16
2607 2761 9.472361 GAGTTAGTCATGTAAACTTTCTGTACA 57.528 33.333 10.09 0.00 33.72 2.90
2608 2762 9.472361 TGAGTTAGTCATGTAAACTTTCTGTAC 57.528 33.333 10.09 0.00 33.72 2.90
2620 2774 9.136323 AGATCATGTGTATGAGTTAGTCATGTA 57.864 33.333 12.39 0.00 46.09 2.29
2652 2806 4.965062 TGTCTCTGAACAAACGAACAAAC 58.035 39.130 0.00 0.00 0.00 2.93
2655 2809 3.061563 CGTTGTCTCTGAACAAACGAACA 59.938 43.478 10.94 0.00 40.62 3.18
2656 2810 3.594312 CGTTGTCTCTGAACAAACGAAC 58.406 45.455 10.94 0.00 40.62 3.95
2657 2811 2.029970 GCGTTGTCTCTGAACAAACGAA 59.970 45.455 17.31 0.00 40.62 3.85
2658 2812 1.591158 GCGTTGTCTCTGAACAAACGA 59.409 47.619 17.31 0.00 40.62 3.85
2659 2813 1.593006 AGCGTTGTCTCTGAACAAACG 59.407 47.619 11.70 11.70 40.62 3.60
2660 2814 3.309954 AGAAGCGTTGTCTCTGAACAAAC 59.690 43.478 6.88 4.21 40.62 2.93
2661 2815 3.531538 AGAAGCGTTGTCTCTGAACAAA 58.468 40.909 6.88 0.00 40.62 2.83
2662 2816 3.123804 GAGAAGCGTTGTCTCTGAACAA 58.876 45.455 5.28 2.66 38.80 2.83
2663 2817 2.743938 GAGAAGCGTTGTCTCTGAACA 58.256 47.619 5.28 0.00 38.80 3.18
2670 2824 6.166279 TCAATTCATTAGAGAAGCGTTGTCT 58.834 36.000 3.64 3.64 37.10 3.41
2671 2825 6.408858 TCAATTCATTAGAGAAGCGTTGTC 57.591 37.500 0.00 0.00 0.00 3.18
2672 2826 6.650807 TCTTCAATTCATTAGAGAAGCGTTGT 59.349 34.615 0.00 0.00 36.52 3.32
2673 2827 7.065216 TCTTCAATTCATTAGAGAAGCGTTG 57.935 36.000 0.00 0.00 36.52 4.10
2674 2828 7.856145 ATCTTCAATTCATTAGAGAAGCGTT 57.144 32.000 0.00 0.00 36.52 4.84
2675 2829 7.655328 CCTATCTTCAATTCATTAGAGAAGCGT 59.345 37.037 0.00 0.00 36.52 5.07
2676 2830 7.869937 TCCTATCTTCAATTCATTAGAGAAGCG 59.130 37.037 0.00 0.00 36.52 4.68
2677 2831 9.553064 TTCCTATCTTCAATTCATTAGAGAAGC 57.447 33.333 0.00 0.00 36.52 3.86
2718 2872 3.690460 AGCTAGCTGGTTTTAAGTGCAT 58.310 40.909 18.57 0.00 0.00 3.96
2765 2919 9.177608 TGCAAAGAATGTGTATTAAAGCTATCT 57.822 29.630 0.00 0.00 0.00 1.98
2769 2923 7.761249 GGAATGCAAAGAATGTGTATTAAAGCT 59.239 33.333 0.00 0.00 38.83 3.74
2774 2946 6.405731 GCCTGGAATGCAAAGAATGTGTATTA 60.406 38.462 0.00 0.00 38.83 0.98
2775 2947 5.625197 GCCTGGAATGCAAAGAATGTGTATT 60.625 40.000 0.00 0.00 41.56 1.89
2779 2951 2.232941 AGCCTGGAATGCAAAGAATGTG 59.767 45.455 0.00 0.00 0.00 3.21
2781 2953 3.604875 AAGCCTGGAATGCAAAGAATG 57.395 42.857 0.00 0.00 0.00 2.67
2782 2954 4.088634 TGTAAGCCTGGAATGCAAAGAAT 58.911 39.130 0.00 0.00 0.00 2.40
2799 2971 6.765036 ACATCACATCCAAAGATAGCTGTAAG 59.235 38.462 0.00 0.00 0.00 2.34
2800 2972 6.653020 ACATCACATCCAAAGATAGCTGTAA 58.347 36.000 0.00 0.00 0.00 2.41
2802 2974 5.108187 ACATCACATCCAAAGATAGCTGT 57.892 39.130 0.00 0.00 0.00 4.40
2803 2975 6.765036 AGTAACATCACATCCAAAGATAGCTG 59.235 38.462 0.00 0.00 0.00 4.24
2804 2976 6.765036 CAGTAACATCACATCCAAAGATAGCT 59.235 38.462 0.00 0.00 0.00 3.32
2805 2977 6.540189 ACAGTAACATCACATCCAAAGATAGC 59.460 38.462 0.00 0.00 0.00 2.97
2806 2978 8.498054 AACAGTAACATCACATCCAAAGATAG 57.502 34.615 0.00 0.00 0.00 2.08
2808 2980 9.466497 AATAACAGTAACATCACATCCAAAGAT 57.534 29.630 0.00 0.00 0.00 2.40
2809 2981 8.862325 AATAACAGTAACATCACATCCAAAGA 57.138 30.769 0.00 0.00 0.00 2.52
2813 2985 9.119418 CCATAAATAACAGTAACATCACATCCA 57.881 33.333 0.00 0.00 0.00 3.41
2814 2986 9.120538 ACCATAAATAACAGTAACATCACATCC 57.879 33.333 0.00 0.00 0.00 3.51
3046 3235 2.096069 CCTTGAGTGAATGTCAGCGTTG 60.096 50.000 0.00 0.00 0.00 4.10
3362 3566 4.245660 CCTTCTTGATCTAGCGTGTTCAA 58.754 43.478 0.00 5.73 0.00 2.69
3392 3596 3.579151 GAGTAACTTCCACCTTGACTCCT 59.421 47.826 0.00 0.00 0.00 3.69
3398 3602 2.224209 ACGGTGAGTAACTTCCACCTTG 60.224 50.000 0.00 0.00 46.03 3.61
3470 3674 2.050918 GCTCCATACCTTAGCTCCCTT 58.949 52.381 0.00 0.00 33.40 3.95
3534 3738 4.142609 ACGTACATGAATGGCTTCAGAT 57.857 40.909 0.00 0.54 44.32 2.90
3554 3758 5.914898 AATAGCACCATAGGTTTTCCAAC 57.085 39.130 0.00 0.00 43.73 3.77
3796 4002 7.667575 AAGAAATAGAGCAGGATCTTCACTA 57.332 36.000 0.00 0.00 0.00 2.74
3836 4043 8.637099 TCATAAACAATTGATTCACAGGTTTCA 58.363 29.630 13.59 0.00 34.04 2.69
3899 4106 0.817654 GCCCCTCCACTATTTTGCAC 59.182 55.000 0.00 0.00 0.00 4.57
4031 4238 4.559862 AGAATGGTAGAAGTCCCAACAG 57.440 45.455 0.00 0.00 33.66 3.16
4050 4257 4.535526 TTGCTCACTTGCACATAGTAGA 57.464 40.909 0.00 0.00 43.20 2.59
4119 4329 6.212589 TGGTAAGAGTTGTGATTCACCATCTA 59.787 38.462 14.05 0.00 32.73 1.98
4199 4409 1.298859 GCAAAATCCGTGCCTCGACT 61.299 55.000 0.02 0.00 42.86 4.18
4497 4727 7.032580 CGGCTGTTTGATGGATTGTTATTTTA 58.967 34.615 0.00 0.00 0.00 1.52
4505 4735 3.009723 AGTACGGCTGTTTGATGGATTG 58.990 45.455 1.99 0.00 0.00 2.67
4525 4760 6.760298 AGGCGATATGATTCATGTAGCATTAG 59.240 38.462 22.88 2.62 35.93 1.73
4529 4764 4.541973 AGGCGATATGATTCATGTAGCA 57.458 40.909 22.88 0.00 35.93 3.49
4557 4816 5.479375 TGAACAGTAAGGGTCGAGATAAAGT 59.521 40.000 0.00 0.00 0.00 2.66
4596 4855 7.523293 TTGACCATTTTCTGCATAAAGAAGA 57.477 32.000 0.00 0.00 37.48 2.87
4598 4857 7.098477 CCATTGACCATTTTCTGCATAAAGAA 58.902 34.615 0.00 0.00 34.36 2.52
4599 4858 6.211184 ACCATTGACCATTTTCTGCATAAAGA 59.789 34.615 0.00 0.00 0.00 2.52
4600 4859 6.311935 CACCATTGACCATTTTCTGCATAAAG 59.688 38.462 0.00 0.00 0.00 1.85
4601 4860 6.164876 CACCATTGACCATTTTCTGCATAAA 58.835 36.000 0.00 0.00 0.00 1.40
4758 5017 6.199908 GCATGTACAATGTGCAAAAAGTGTAA 59.800 34.615 8.44 1.18 38.68 2.41
4823 5083 9.819267 AAAGTCCTATAATTGACAGTAAGTAGC 57.181 33.333 0.00 0.00 33.89 3.58
5016 5280 6.479001 GCAGAAATAGACATAGCCGAAACTTA 59.521 38.462 0.00 0.00 0.00 2.24
5019 5283 4.570772 TGCAGAAATAGACATAGCCGAAAC 59.429 41.667 0.00 0.00 0.00 2.78
5282 5578 2.448961 TCCCCCAACCTTCATCAAGAAA 59.551 45.455 0.00 0.00 35.40 2.52
5456 5763 3.134623 ACAGAACAGTCACTGAACATGGA 59.865 43.478 13.14 0.00 37.54 3.41
5457 5764 3.470709 ACAGAACAGTCACTGAACATGG 58.529 45.455 13.14 0.00 37.54 3.66
5794 6122 5.574970 AAAGGATATAAGAAGCTCCCTGG 57.425 43.478 0.00 0.00 0.00 4.45
5868 6196 4.938226 ACTAGTGTAGAATTTCTGCAAGGC 59.062 41.667 17.24 7.03 40.67 4.35
5930 6268 5.476091 TTTTCCAAACAAACTCCAGTGTT 57.524 34.783 0.00 0.00 39.63 3.32
6004 6345 2.803155 TTCACTCACGCCATCCCTGC 62.803 60.000 0.00 0.00 0.00 4.85
6014 6355 0.034059 AGAACTGGCCTTCACTCACG 59.966 55.000 3.32 0.00 0.00 4.35
6139 6487 1.523258 GCGCATGCCTGAGAGACAT 60.523 57.895 13.15 0.00 33.98 3.06
6141 6489 1.497223 GATGCGCATGCCTGAGAGAC 61.497 60.000 30.76 4.98 41.78 3.36
6164 6512 0.955919 GCGGCTGGTAGTTTGCTTCT 60.956 55.000 0.00 0.00 0.00 2.85
6460 6809 7.725818 ACAATATGCAAGTATGTCTCATCAG 57.274 36.000 0.00 0.00 0.00 2.90
6461 6810 8.510243 AAACAATATGCAAGTATGTCTCATCA 57.490 30.769 0.00 0.00 0.00 3.07
6466 6816 8.959548 TGATGAAAACAATATGCAAGTATGTCT 58.040 29.630 0.00 0.00 0.00 3.41
6483 6833 9.383519 TCACCTCATAGTCTAAATGATGAAAAC 57.616 33.333 0.00 0.00 33.08 2.43
6486 6836 8.152898 CCATCACCTCATAGTCTAAATGATGAA 58.847 37.037 11.45 0.60 43.04 2.57
6488 6838 7.448420 ACCATCACCTCATAGTCTAAATGATG 58.552 38.462 0.00 0.00 41.09 3.07
6489 6839 7.623999 ACCATCACCTCATAGTCTAAATGAT 57.376 36.000 0.00 0.00 33.08 2.45
6490 6840 7.125659 TCAACCATCACCTCATAGTCTAAATGA 59.874 37.037 0.00 0.00 32.56 2.57
6491 6841 7.275183 TCAACCATCACCTCATAGTCTAAATG 58.725 38.462 0.00 0.00 0.00 2.32
6492 6842 7.437713 TCAACCATCACCTCATAGTCTAAAT 57.562 36.000 0.00 0.00 0.00 1.40
6496 6855 5.762179 TTTCAACCATCACCTCATAGTCT 57.238 39.130 0.00 0.00 0.00 3.24
6499 6858 6.996879 AGATCATTTCAACCATCACCTCATAG 59.003 38.462 0.00 0.00 0.00 2.23
6501 6860 5.763355 AGATCATTTCAACCATCACCTCAT 58.237 37.500 0.00 0.00 0.00 2.90
6510 6869 4.463539 CCACAATGGAGATCATTTCAACCA 59.536 41.667 0.00 0.00 43.04 3.67
6512 6871 4.463891 ACCCACAATGGAGATCATTTCAAC 59.536 41.667 0.00 0.00 43.04 3.18
6624 6983 3.100658 TGCAGAACTTACGTGTAGCAA 57.899 42.857 0.00 0.00 0.00 3.91
6641 7000 3.561120 AACCGGGCGAAGGATTGCA 62.561 57.895 6.32 0.00 0.00 4.08
6645 7004 1.338136 ATGAGAACCGGGCGAAGGAT 61.338 55.000 6.32 0.00 0.00 3.24
6704 7064 5.199982 AGAGGTCAGAGGAGATTGTAAGA 57.800 43.478 0.00 0.00 0.00 2.10
6772 7132 0.109132 GCAAAGATTTCAGGGTGCGG 60.109 55.000 0.00 0.00 0.00 5.69
6773 7133 0.109132 GGCAAAGATTTCAGGGTGCG 60.109 55.000 0.00 0.00 32.77 5.34
6778 7138 5.920193 TTTAGGATGGCAAAGATTTCAGG 57.080 39.130 0.00 0.00 0.00 3.86
6857 7261 4.421058 GGAAGCAGAAAACGTTTTCAGTT 58.579 39.130 40.11 31.99 46.81 3.16
7135 7556 3.138798 GCAGGTGAGCAGGCATGG 61.139 66.667 0.00 0.00 0.00 3.66
7136 7557 2.360726 TGCAGGTGAGCAGGCATG 60.361 61.111 0.00 0.00 40.11 4.06
7137 7558 2.360852 GTGCAGGTGAGCAGGCAT 60.361 61.111 4.44 0.00 46.69 4.40
7138 7559 4.994471 CGTGCAGGTGAGCAGGCA 62.994 66.667 0.00 0.00 46.69 4.75
7141 7562 1.016130 CCTAACGTGCAGGTGAGCAG 61.016 60.000 17.12 10.11 46.69 4.24
7142 7563 1.005037 CCTAACGTGCAGGTGAGCA 60.005 57.895 17.12 1.57 43.35 4.26
7143 7564 1.004918 ACCTAACGTGCAGGTGAGC 60.005 57.895 18.69 0.00 44.89 4.26
7148 7569 1.066858 ACTGATCACCTAACGTGCAGG 60.067 52.381 13.57 13.57 42.69 4.85
7149 7570 2.370281 ACTGATCACCTAACGTGCAG 57.630 50.000 0.00 0.00 42.69 4.41
7150 7571 2.036604 TGAACTGATCACCTAACGTGCA 59.963 45.455 0.00 0.00 42.69 4.57
7419 7866 4.082571 ACCAAGCAAGCACATTCTGAATAC 60.083 41.667 1.98 0.00 0.00 1.89
7443 7890 5.120519 CCATGATTAACTTGCGCAAATGTTT 59.879 36.000 26.39 17.98 0.00 2.83
7497 7944 5.354234 CCTAAATGGTGGTAGTTGCAAGTAG 59.646 44.000 14.34 0.69 0.00 2.57
7704 8202 9.260002 GATTGTTTGAGTGGTTATGTTGATTTT 57.740 29.630 0.00 0.00 0.00 1.82
7720 8218 4.434330 GGCGAAGTAGAACGATTGTTTGAG 60.434 45.833 0.00 0.00 38.78 3.02
7731 8229 2.486951 TCATAGCGGCGAAGTAGAAC 57.513 50.000 12.98 0.00 0.00 3.01
7784 8307 1.586154 CGGCCTTTTGGATCAAGCGT 61.586 55.000 0.00 0.00 44.07 5.07
7785 8308 1.137404 CGGCCTTTTGGATCAAGCG 59.863 57.895 0.00 0.00 44.07 4.68
7813 8336 1.447314 GGCCCCTGTTCGAACTACG 60.447 63.158 27.32 15.74 44.09 3.51
7855 8378 3.948719 TTCCCTCGGGCGTGCTTT 61.949 61.111 0.00 0.00 34.68 3.51
7880 8403 4.807631 TCCCGGTCGATCGAGCCA 62.808 66.667 34.18 19.68 39.23 4.75
7940 8478 3.347958 TTCGGTTGCATTGTTCTTGTC 57.652 42.857 0.00 0.00 0.00 3.18
7946 8489 1.888512 AGCTGATTCGGTTGCATTGTT 59.111 42.857 0.00 0.00 0.00 2.83
8024 8567 4.944619 AATGCTCTAGCTGCTGTATGTA 57.055 40.909 13.43 0.00 42.66 2.29
8030 8573 4.582701 ACTAGTAATGCTCTAGCTGCTG 57.417 45.455 13.43 2.51 42.66 4.41
8031 8574 5.626142 TCTACTAGTAATGCTCTAGCTGCT 58.374 41.667 7.57 7.57 42.66 4.24
8032 8575 5.950758 TCTACTAGTAATGCTCTAGCTGC 57.049 43.478 3.76 0.00 42.66 5.25
8033 8576 6.294286 GGGTTCTACTAGTAATGCTCTAGCTG 60.294 46.154 3.76 0.00 42.66 4.24
8034 8577 5.771165 GGGTTCTACTAGTAATGCTCTAGCT 59.229 44.000 3.76 0.00 42.66 3.32
8035 8578 5.771165 AGGGTTCTACTAGTAATGCTCTAGC 59.229 44.000 3.76 0.00 38.60 3.42
8036 8579 6.999272 TGAGGGTTCTACTAGTAATGCTCTAG 59.001 42.308 3.76 0.00 40.23 2.43
8037 8580 6.907961 TGAGGGTTCTACTAGTAATGCTCTA 58.092 40.000 3.76 0.00 0.00 2.43
8038 8581 5.767670 TGAGGGTTCTACTAGTAATGCTCT 58.232 41.667 3.76 2.05 0.00 4.09
8039 8582 6.466885 TTGAGGGTTCTACTAGTAATGCTC 57.533 41.667 3.76 0.00 0.00 4.26
8040 8583 6.351966 GGTTTGAGGGTTCTACTAGTAATGCT 60.352 42.308 3.76 0.00 0.00 3.79
8041 8584 5.816258 GGTTTGAGGGTTCTACTAGTAATGC 59.184 44.000 3.76 0.00 0.00 3.56
8042 8585 6.156429 AGGGTTTGAGGGTTCTACTAGTAATG 59.844 42.308 3.76 0.00 0.00 1.90
8043 8586 6.269974 AGGGTTTGAGGGTTCTACTAGTAAT 58.730 40.000 3.76 0.00 0.00 1.89
8044 8587 5.658474 AGGGTTTGAGGGTTCTACTAGTAA 58.342 41.667 3.76 0.00 0.00 2.24
8045 8588 5.222400 TGAGGGTTTGAGGGTTCTACTAGTA 60.222 44.000 1.89 1.89 0.00 1.82
8046 8589 4.095211 GAGGGTTTGAGGGTTCTACTAGT 58.905 47.826 0.00 0.00 0.00 2.57
8047 8590 4.094476 TGAGGGTTTGAGGGTTCTACTAG 58.906 47.826 0.00 0.00 0.00 2.57
8048 8591 4.136341 TGAGGGTTTGAGGGTTCTACTA 57.864 45.455 0.00 0.00 0.00 1.82
8049 8592 2.986050 TGAGGGTTTGAGGGTTCTACT 58.014 47.619 0.00 0.00 0.00 2.57
8050 8593 3.782656 TTGAGGGTTTGAGGGTTCTAC 57.217 47.619 0.00 0.00 0.00 2.59
8051 8594 3.460340 TGTTTGAGGGTTTGAGGGTTCTA 59.540 43.478 0.00 0.00 0.00 2.10
8052 8595 2.243736 TGTTTGAGGGTTTGAGGGTTCT 59.756 45.455 0.00 0.00 0.00 3.01
8053 8596 2.361119 GTGTTTGAGGGTTTGAGGGTTC 59.639 50.000 0.00 0.00 0.00 3.62
8054 8597 2.024369 AGTGTTTGAGGGTTTGAGGGTT 60.024 45.455 0.00 0.00 0.00 4.11
8055 8598 1.569072 AGTGTTTGAGGGTTTGAGGGT 59.431 47.619 0.00 0.00 0.00 4.34
8056 8599 2.362077 CAAGTGTTTGAGGGTTTGAGGG 59.638 50.000 0.00 0.00 36.36 4.30
8057 8600 3.023832 ACAAGTGTTTGAGGGTTTGAGG 58.976 45.455 0.00 0.00 37.73 3.86
8058 8601 4.261197 GCTACAAGTGTTTGAGGGTTTGAG 60.261 45.833 0.00 0.00 37.73 3.02
8059 8602 3.630312 GCTACAAGTGTTTGAGGGTTTGA 59.370 43.478 0.00 0.00 37.73 2.69
8060 8603 3.380004 TGCTACAAGTGTTTGAGGGTTTG 59.620 43.478 0.00 0.00 37.73 2.93
8061 8604 3.626930 TGCTACAAGTGTTTGAGGGTTT 58.373 40.909 0.00 0.00 37.73 3.27
8062 8605 3.214328 CTGCTACAAGTGTTTGAGGGTT 58.786 45.455 0.00 0.00 37.73 4.11
8063 8606 2.172717 ACTGCTACAAGTGTTTGAGGGT 59.827 45.455 0.00 0.00 37.73 4.34
8064 8607 2.851195 ACTGCTACAAGTGTTTGAGGG 58.149 47.619 0.00 0.00 37.73 4.30
8065 8608 4.900635 AAACTGCTACAAGTGTTTGAGG 57.099 40.909 0.00 0.00 37.73 3.86
8066 8609 7.693952 TCTTAAAACTGCTACAAGTGTTTGAG 58.306 34.615 0.00 0.00 37.73 3.02
8067 8610 7.335924 ACTCTTAAAACTGCTACAAGTGTTTGA 59.664 33.333 0.00 0.00 37.73 2.69
8068 8611 7.472543 ACTCTTAAAACTGCTACAAGTGTTTG 58.527 34.615 0.00 0.00 40.24 2.93
8069 8612 7.625828 ACTCTTAAAACTGCTACAAGTGTTT 57.374 32.000 0.00 0.00 34.59 2.83
8070 8613 7.472543 CAACTCTTAAAACTGCTACAAGTGTT 58.527 34.615 0.00 0.00 34.84 3.32
8071 8614 7.016361 CAACTCTTAAAACTGCTACAAGTGT 57.984 36.000 0.00 0.00 0.00 3.55


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.