Multiple sequence alignment - TraesCS7A01G556300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G556300 chr7A 100.000 1688 0 0 850 2537 727774293 727772606 0.000000e+00 3118
1 TraesCS7A01G556300 chr7A 100.000 633 0 0 1 633 727775142 727774510 0.000000e+00 1170
2 TraesCS7A01G556300 chr7A 90.199 653 61 1 850 1502 727788645 727787996 0.000000e+00 848
3 TraesCS7A01G556300 chr7A 90.995 633 39 7 1 633 727789296 727788682 0.000000e+00 837
4 TraesCS7A01G556300 chr7A 86.194 268 25 6 1635 1895 727787521 727787259 1.920000e-71 279
5 TraesCS7A01G556300 chr7A 82.500 240 26 7 1922 2150 727787278 727787044 1.990000e-46 196
6 TraesCS7A01G556300 chr7A 76.753 271 50 10 872 1140 727597552 727597293 3.400000e-29 139
7 TraesCS7A01G556300 chr7D 93.156 1052 55 8 850 1893 638296314 638297356 0.000000e+00 1528
8 TraesCS7A01G556300 chr7D 91.667 624 33 9 1 624 638287215 638287819 0.000000e+00 846
9 TraesCS7A01G556300 chr7D 85.213 656 85 8 850 1502 638287869 638288515 0.000000e+00 664
10 TraesCS7A01G556300 chr7D 87.949 473 48 7 1922 2392 638297337 638297802 1.330000e-152 549
11 TraesCS7A01G556300 chr7D 87.077 325 30 8 156 469 638295875 638296198 8.630000e-95 357
12 TraesCS7A01G556300 chr7D 80.952 441 60 8 1922 2357 638288843 638289264 6.770000e-86 327
13 TraesCS7A01G556300 chr7D 78.185 518 92 11 988 1502 638273937 638274436 6.820000e-81 311
14 TraesCS7A01G556300 chr7D 84.892 278 19 13 1625 1893 638288599 638288862 2.500000e-65 259
15 TraesCS7A01G556300 chr7B 85.727 1093 92 36 850 1913 734408380 734407323 0.000000e+00 1096
16 TraesCS7A01G556300 chr7B 81.289 636 106 12 872 1502 734380060 734379433 1.050000e-138 503
17 TraesCS7A01G556300 chr7B 82.460 496 62 19 1902 2392 734407362 734406887 6.530000e-111 411
18 TraesCS7A01G556300 chr7B 78.101 516 91 14 988 1501 734426981 734426486 8.820000e-80 307
19 TraesCS7A01G556300 chr7B 84.946 279 38 4 4 282 734409360 734409086 1.920000e-71 279
20 TraesCS7A01G556300 chr7B 76.258 497 83 25 868 1337 734361048 734360560 5.460000e-57 231
21 TraesCS7A01G556300 chr7B 75.530 519 97 24 872 1387 734366711 734366220 7.060000e-56 228


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G556300 chr7A 727772606 727775142 2536 True 2144.000000 3118 100.000000 1 2537 2 chr7A.!!$R2 2536
1 TraesCS7A01G556300 chr7A 727787044 727789296 2252 True 540.000000 848 87.472000 1 2150 4 chr7A.!!$R3 2149
2 TraesCS7A01G556300 chr7D 638295875 638297802 1927 False 811.333333 1528 89.394000 156 2392 3 chr7D.!!$F3 2236
3 TraesCS7A01G556300 chr7D 638287215 638289264 2049 False 524.000000 846 85.681000 1 2357 4 chr7D.!!$F2 2356
4 TraesCS7A01G556300 chr7B 734406887 734409360 2473 True 595.333333 1096 84.377667 4 2392 3 chr7B.!!$R5 2388
5 TraesCS7A01G556300 chr7B 734379433 734380060 627 True 503.000000 503 81.289000 872 1502 1 chr7B.!!$R3 630

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
128 129 0.107993 ATCACGTCCACATCAGCCAG 60.108 55.0 0.0 0.0 0.0 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1714 2321 0.75906 GGAAACACCCCAAAGTGGCT 60.759 55.0 0.0 0.0 42.28 4.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.874970 ACTATCCTGCTGCAAAAGTTTTG 58.125 39.130 21.60 21.60 0.00 2.44
30 31 5.124645 TGCTGCAAAAGTTTTGGATCAAAT 58.875 33.333 25.65 0.00 33.19 2.32
34 35 6.783162 TGCAAAAGTTTTGGATCAAATGTTG 58.217 32.000 25.65 1.22 33.19 3.33
54 55 3.405831 TGAAGCTTCCAACATGTCTCAG 58.594 45.455 23.42 0.00 0.00 3.35
62 63 6.621596 GCTTCCAACATGTCTCAGTATTTCAC 60.622 42.308 0.00 0.00 0.00 3.18
128 129 0.107993 ATCACGTCCACATCAGCCAG 60.108 55.000 0.00 0.00 0.00 4.85
192 193 6.008696 TCCTTCCACTTTAGTTTTCCTTCA 57.991 37.500 0.00 0.00 0.00 3.02
327 328 7.899973 ACACAATGAAAAAGGCAATAGATTCT 58.100 30.769 0.00 0.00 0.00 2.40
351 352 3.736252 CCCTGCAAATATTCGTAGAGTCG 59.264 47.826 0.00 0.00 38.43 4.18
473 484 3.186119 CACGGACAATTTTTGCACAAGT 58.814 40.909 0.00 0.00 0.00 3.16
476 487 3.733727 CGGACAATTTTTGCACAAGTACC 59.266 43.478 0.00 0.00 0.00 3.34
516 527 1.035923 TTTTGCTGGGTCGAATGCAA 58.964 45.000 10.23 10.23 42.60 4.08
535 546 1.928868 ACAAGCCAGCAATAAAGCCT 58.071 45.000 0.00 0.00 34.23 4.58
545 556 6.424812 GCCAGCAATAAAGCCTAATTAAATGG 59.575 38.462 0.00 0.00 34.23 3.16
557 568 8.593492 GCCTAATTAAATGGCAAATCTTAAGG 57.407 34.615 8.88 0.00 45.46 2.69
614 628 7.766283 TGTGAAGACAAATTGAATGTACAACA 58.234 30.769 0.00 0.33 32.50 3.33
629 643 5.599732 TGTACAACACGACCTAGCTAAAAA 58.400 37.500 0.00 0.00 0.00 1.94
632 646 3.396260 ACACGACCTAGCTAAAAAGCA 57.604 42.857 0.00 0.00 37.25 3.91
949 1166 3.591835 ACCTGTTGTTTGCCGCCG 61.592 61.111 0.00 0.00 0.00 6.46
977 1194 3.698463 CACCGTGGTTGTCGACGC 61.698 66.667 11.62 6.23 42.71 5.19
1137 1357 2.515523 GCCAGGCAGATCGCACAT 60.516 61.111 6.55 0.00 45.17 3.21
1151 1371 1.687494 GCACATTCTGACGACGAGCC 61.687 60.000 0.00 0.00 0.00 4.70
1212 1432 3.845259 GTGGGGAGCGCGTGGATA 61.845 66.667 8.43 0.00 0.00 2.59
1551 1827 3.891586 TTGACTCCGAGCGTGCGTC 62.892 63.158 0.00 0.00 0.00 5.19
1575 1851 0.872451 CGATGCTCTGCTCTGCTCTG 60.872 60.000 0.00 0.00 0.00 3.35
1576 1852 1.153329 ATGCTCTGCTCTGCTCTGC 60.153 57.895 0.00 0.00 0.00 4.26
1577 1853 2.512057 GCTCTGCTCTGCTCTGCC 60.512 66.667 0.00 0.00 0.00 4.85
1578 1854 3.021473 GCTCTGCTCTGCTCTGCCT 62.021 63.158 0.00 0.00 0.00 4.75
1579 1855 1.142314 CTCTGCTCTGCTCTGCCTC 59.858 63.158 0.00 0.00 0.00 4.70
1668 2275 1.740296 CGGCCAACGGACAGGTAAG 60.740 63.158 2.24 0.00 39.42 2.34
1714 2321 4.436515 CCGATATGGCTCGTGCAA 57.563 55.556 12.07 0.00 41.91 4.08
1810 2423 7.814107 TGGAAATTAAGCAAAGCACTAGAAATG 59.186 33.333 0.00 0.00 0.00 2.32
1886 2508 0.029700 CAGCCATGTGTGTGTGTGTG 59.970 55.000 0.00 0.00 0.00 3.82
1887 2509 0.394216 AGCCATGTGTGTGTGTGTGT 60.394 50.000 0.00 0.00 0.00 3.72
1888 2510 0.455410 GCCATGTGTGTGTGTGTGTT 59.545 50.000 0.00 0.00 0.00 3.32
1889 2511 1.135141 GCCATGTGTGTGTGTGTGTTT 60.135 47.619 0.00 0.00 0.00 2.83
1890 2512 2.528125 CCATGTGTGTGTGTGTGTTTG 58.472 47.619 0.00 0.00 0.00 2.93
1891 2513 2.094803 CCATGTGTGTGTGTGTGTTTGT 60.095 45.455 0.00 0.00 0.00 2.83
1892 2514 2.695613 TGTGTGTGTGTGTGTTTGTG 57.304 45.000 0.00 0.00 0.00 3.33
1893 2515 1.950216 TGTGTGTGTGTGTGTTTGTGT 59.050 42.857 0.00 0.00 0.00 3.72
1894 2516 2.287248 TGTGTGTGTGTGTGTTTGTGTG 60.287 45.455 0.00 0.00 0.00 3.82
1895 2517 1.950216 TGTGTGTGTGTGTTTGTGTGT 59.050 42.857 0.00 0.00 0.00 3.72
1896 2518 2.287248 TGTGTGTGTGTGTTTGTGTGTG 60.287 45.455 0.00 0.00 0.00 3.82
1897 2519 1.950216 TGTGTGTGTGTTTGTGTGTGT 59.050 42.857 0.00 0.00 0.00 3.72
1898 2520 2.287248 TGTGTGTGTGTTTGTGTGTGTG 60.287 45.455 0.00 0.00 0.00 3.82
1899 2521 1.950216 TGTGTGTGTTTGTGTGTGTGT 59.050 42.857 0.00 0.00 0.00 3.72
1900 2522 2.287248 TGTGTGTGTTTGTGTGTGTGTG 60.287 45.455 0.00 0.00 0.00 3.82
1901 2523 1.950216 TGTGTGTTTGTGTGTGTGTGT 59.050 42.857 0.00 0.00 0.00 3.72
1902 2524 2.287248 TGTGTGTTTGTGTGTGTGTGTG 60.287 45.455 0.00 0.00 0.00 3.82
1903 2525 1.950216 TGTGTTTGTGTGTGTGTGTGT 59.050 42.857 0.00 0.00 0.00 3.72
1904 2526 2.287248 TGTGTTTGTGTGTGTGTGTGTG 60.287 45.455 0.00 0.00 0.00 3.82
1905 2527 1.950216 TGTTTGTGTGTGTGTGTGTGT 59.050 42.857 0.00 0.00 0.00 3.72
1906 2528 2.287248 TGTTTGTGTGTGTGTGTGTGTG 60.287 45.455 0.00 0.00 0.00 3.82
1907 2529 1.598882 TTGTGTGTGTGTGTGTGTGT 58.401 45.000 0.00 0.00 0.00 3.72
1908 2530 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1909 2531 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1910 2532 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1911 2533 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1912 2534 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1913 2535 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1914 2536 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1915 2537 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1916 2538 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1917 2539 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1918 2540 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1919 2541 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1920 2542 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1921 2543 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1922 2544 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1923 2545 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1924 2546 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1925 2547 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1926 2548 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1927 2549 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1928 2550 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1929 2551 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1970 2612 4.873827 TGAGACACGCTTTACTTCTTTTGT 59.126 37.500 0.00 0.00 0.00 2.83
1971 2613 5.353123 TGAGACACGCTTTACTTCTTTTGTT 59.647 36.000 0.00 0.00 0.00 2.83
2039 2689 6.303054 TCATTTCTTGTGGTAAAGTGGATCA 58.697 36.000 0.00 0.00 0.00 2.92
2073 2725 2.437413 GAGGCACCCCTTTTGACTAAG 58.563 52.381 0.00 0.00 43.12 2.18
2083 2735 7.667219 CACCCCTTTTGACTAAGATATGCATAT 59.333 37.037 19.17 19.17 0.00 1.78
2084 2736 8.890472 ACCCCTTTTGACTAAGATATGCATATA 58.110 33.333 19.12 3.43 0.00 0.86
2117 2770 8.332464 TCTGAACAAAACACATAAAAGACTACG 58.668 33.333 0.00 0.00 0.00 3.51
2199 2852 5.779806 AGACGCCAATATATAATTGACGC 57.220 39.130 6.38 1.18 38.20 5.19
2256 2909 8.397906 TCATTCGATTTAGGATGTTTGATCAAC 58.602 33.333 7.89 4.45 35.71 3.18
2333 2988 7.767635 AGGCCACTTACTATACTAGTATTCCT 58.232 38.462 20.21 9.89 40.66 3.36
2392 3048 9.936329 ACAGTCCCCAAAATATAGAATGTAAAT 57.064 29.630 0.00 0.00 34.36 1.40
2397 3053 9.271828 CCCCAAAATATAGAATGTAAATTTGCC 57.728 33.333 0.00 0.00 0.00 4.52
2398 3054 9.829507 CCCAAAATATAGAATGTAAATTTGCCA 57.170 29.630 0.00 0.00 0.00 4.92
2526 3182 9.617523 AAATATTTCCTGCAATATTTTCCCTTG 57.382 29.630 7.86 0.00 42.72 3.61
2527 3183 5.419239 TTTCCTGCAATATTTTCCCTTGG 57.581 39.130 0.00 0.00 0.00 3.61
2528 3184 4.329638 TCCTGCAATATTTTCCCTTGGA 57.670 40.909 0.00 0.00 0.00 3.53
2529 3185 4.023291 TCCTGCAATATTTTCCCTTGGAC 58.977 43.478 0.00 0.00 0.00 4.02
2530 3186 3.768757 CCTGCAATATTTTCCCTTGGACA 59.231 43.478 0.00 0.00 0.00 4.02
2531 3187 4.406649 CCTGCAATATTTTCCCTTGGACAT 59.593 41.667 0.00 0.00 0.00 3.06
2532 3188 5.341872 TGCAATATTTTCCCTTGGACATG 57.658 39.130 0.00 0.00 0.00 3.21
2533 3189 4.776837 TGCAATATTTTCCCTTGGACATGT 59.223 37.500 0.00 0.00 0.00 3.21
2534 3190 5.954752 TGCAATATTTTCCCTTGGACATGTA 59.045 36.000 0.00 0.00 0.00 2.29
2535 3191 6.610830 TGCAATATTTTCCCTTGGACATGTAT 59.389 34.615 0.00 0.00 0.00 2.29
2536 3192 7.782168 TGCAATATTTTCCCTTGGACATGTATA 59.218 33.333 0.00 0.00 0.00 1.47
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 4.588106 TGGAAGCTTCAACATTTGATCCAA 59.412 37.500 27.02 0.00 40.36 3.53
22 23 4.789012 TGGAAGCTTCAACATTTGATCC 57.211 40.909 27.02 7.24 39.84 3.36
34 35 3.406764 ACTGAGACATGTTGGAAGCTTC 58.593 45.455 18.54 18.54 0.00 3.86
47 48 4.160329 AGGGACTGTGAAATACTGAGACA 58.840 43.478 0.00 0.00 37.18 3.41
128 129 3.791353 GCTTGATTGCCGTTAAAGTATGC 59.209 43.478 0.00 0.00 0.00 3.14
192 193 5.114780 CAACTCGACTGATGGAGATCATTT 58.885 41.667 0.00 0.00 37.97 2.32
327 328 5.506815 CGACTCTACGAATATTTGCAGGGTA 60.507 44.000 8.25 0.00 35.09 3.69
473 484 6.356556 ACATAAATTGTATGCTCTGCTGGTA 58.643 36.000 0.00 0.00 36.57 3.25
476 487 7.463648 GCAAAACATAAATTGTATGCTCTGCTG 60.464 37.037 8.38 0.00 43.10 4.41
516 527 1.928868 AGGCTTTATTGCTGGCTTGT 58.071 45.000 0.00 0.00 32.59 3.16
545 556 9.476202 AAAACTTATGTGTTCCTTAAGATTTGC 57.524 29.630 3.36 0.00 35.91 3.68
588 602 8.246871 TGTTGTACATTCAATTTGTCTTCACAA 58.753 29.630 0.00 1.50 40.97 3.33
865 1082 6.981762 TGACACGTTTTTACCTTAGTTTGA 57.018 33.333 0.00 0.00 0.00 2.69
1023 1243 4.742201 CTCCGGACCTGTGCCACG 62.742 72.222 0.00 0.00 0.00 4.94
1111 1331 1.685765 TCTGCCTGGCGGAGTACAT 60.686 57.895 25.94 0.00 39.19 2.29
1137 1357 1.579932 GACAGGCTCGTCGTCAGAA 59.420 57.895 0.00 0.00 0.00 3.02
1212 1432 3.491342 GAAGGGCCTCAAGAAGAAAGTT 58.509 45.455 6.46 0.00 0.00 2.66
1551 1827 1.153608 AGAGCAGAGCATCGCACAG 60.154 57.895 0.00 0.00 42.67 3.66
1575 1851 1.173913 ATAAAAACCCACGCAGAGGC 58.826 50.000 0.00 0.00 36.77 4.70
1576 1852 2.354821 GCTATAAAAACCCACGCAGAGG 59.645 50.000 0.00 0.00 38.25 3.69
1577 1853 2.030457 CGCTATAAAAACCCACGCAGAG 59.970 50.000 0.00 0.00 0.00 3.35
1578 1854 2.004017 CGCTATAAAAACCCACGCAGA 58.996 47.619 0.00 0.00 0.00 4.26
1579 1855 1.735571 ACGCTATAAAAACCCACGCAG 59.264 47.619 0.00 0.00 0.00 5.18
1617 2224 1.755179 CCACCATGGTCACTTCCATC 58.245 55.000 16.53 0.00 45.23 3.51
1714 2321 0.759060 GGAAACACCCCAAAGTGGCT 60.759 55.000 0.00 0.00 42.28 4.75
1770 2383 3.880047 ATTTCCACGAATCCACGTAGA 57.120 42.857 0.00 0.00 44.76 2.59
1810 2423 4.939052 ACCATACAGTATCACCACTAGC 57.061 45.455 0.00 0.00 0.00 3.42
1816 2429 9.862371 CTGATATTTCTACCATACAGTATCACC 57.138 37.037 0.00 0.00 0.00 4.02
1818 2431 9.314133 AGCTGATATTTCTACCATACAGTATCA 57.686 33.333 0.00 0.00 0.00 2.15
1847 2468 0.793250 GTCTCTTGGAAAGCAGACGC 59.207 55.000 0.00 0.00 45.70 5.19
1886 2508 2.287308 ACACACACACACACACACAAAC 60.287 45.455 0.00 0.00 0.00 2.93
1887 2509 1.950216 ACACACACACACACACACAAA 59.050 42.857 0.00 0.00 0.00 2.83
1888 2510 1.265365 CACACACACACACACACACAA 59.735 47.619 0.00 0.00 0.00 3.33
1889 2511 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1890 2512 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1891 2513 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1892 2514 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1893 2515 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1894 2516 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1895 2517 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1896 2518 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1897 2519 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1898 2520 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1899 2521 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1900 2522 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1901 2523 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1902 2524 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1903 2525 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1904 2526 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1905 2527 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1906 2528 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1907 2529 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1908 2530 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1909 2531 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1910 2532 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1911 2533 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1912 2534 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1913 2535 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1914 2536 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1915 2537 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1916 2538 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1917 2539 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1918 2540 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1919 2541 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1920 2542 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1921 2543 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1922 2544 1.152510 TCACACACACACACACACAC 58.847 50.000 0.00 0.00 0.00 3.82
1923 2545 1.884235 TTCACACACACACACACACA 58.116 45.000 0.00 0.00 0.00 3.72
1924 2546 2.979401 TTTCACACACACACACACAC 57.021 45.000 0.00 0.00 0.00 3.82
1925 2547 3.142174 TCTTTTCACACACACACACACA 58.858 40.909 0.00 0.00 0.00 3.72
1926 2548 3.822594 TCTTTTCACACACACACACAC 57.177 42.857 0.00 0.00 0.00 3.82
1927 2549 4.006319 TCATCTTTTCACACACACACACA 58.994 39.130 0.00 0.00 0.00 3.72
1928 2550 4.332543 TCTCATCTTTTCACACACACACAC 59.667 41.667 0.00 0.00 0.00 3.82
1929 2551 4.332543 GTCTCATCTTTTCACACACACACA 59.667 41.667 0.00 0.00 0.00 3.72
1970 2612 1.682854 CTTTGGGAGCAAAGCACAGAA 59.317 47.619 0.00 0.00 35.70 3.02
1971 2613 1.133823 TCTTTGGGAGCAAAGCACAGA 60.134 47.619 0.00 0.00 40.81 3.41
2090 2742 9.997482 GTAGTCTTTTATGTGTTTTGTTCAGAA 57.003 29.630 0.00 0.00 0.00 3.02
2094 2746 9.659830 ATTCGTAGTCTTTTATGTGTTTTGTTC 57.340 29.630 0.00 0.00 0.00 3.18
2159 2812 7.101054 TGGCGTCTAAAACTTATGTACAAGAT 58.899 34.615 0.00 0.00 0.00 2.40
2190 2843 2.028876 TCCCAGATCGAGCGTCAATTA 58.971 47.619 0.00 0.00 0.00 1.40
2322 2977 8.487028 CAAAGAATTACCTGGAGGAATACTAGT 58.513 37.037 0.00 0.00 38.94 2.57
2333 2988 3.517296 TGGCACAAAGAATTACCTGGA 57.483 42.857 0.00 0.00 31.92 3.86
2500 3156 9.617523 CAAGGGAAAATATTGCAGGAAATATTT 57.382 29.630 10.79 10.79 46.95 1.40
2501 3157 8.212995 CCAAGGGAAAATATTGCAGGAAATATT 58.787 33.333 0.27 0.27 42.06 1.28
2502 3158 7.568366 TCCAAGGGAAAATATTGCAGGAAATAT 59.432 33.333 0.00 0.00 34.83 1.28
2503 3159 6.900186 TCCAAGGGAAAATATTGCAGGAAATA 59.100 34.615 0.00 0.00 0.00 1.40
2504 3160 5.725822 TCCAAGGGAAAATATTGCAGGAAAT 59.274 36.000 0.00 0.00 0.00 2.17
2505 3161 5.046663 GTCCAAGGGAAAATATTGCAGGAAA 60.047 40.000 0.00 0.00 31.38 3.13
2506 3162 4.466015 GTCCAAGGGAAAATATTGCAGGAA 59.534 41.667 0.00 0.00 31.38 3.36
2507 3163 4.023291 GTCCAAGGGAAAATATTGCAGGA 58.977 43.478 0.00 0.00 31.38 3.86
2508 3164 3.768757 TGTCCAAGGGAAAATATTGCAGG 59.231 43.478 0.00 0.00 31.38 4.85
2509 3165 5.105228 ACATGTCCAAGGGAAAATATTGCAG 60.105 40.000 0.00 0.00 31.38 4.41
2510 3166 4.776837 ACATGTCCAAGGGAAAATATTGCA 59.223 37.500 0.00 0.00 31.38 4.08
2511 3167 5.343307 ACATGTCCAAGGGAAAATATTGC 57.657 39.130 0.00 0.00 31.38 3.56


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.