Multiple sequence alignment - TraesCS7A01G554600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G554600 chr7A 100.000 3910 0 0 1 3910 726908908 726904999 0.000000e+00 7221.0
1 TraesCS7A01G554600 chr7A 87.354 1115 122 12 2806 3910 586205596 586206701 0.000000e+00 1260.0
2 TraesCS7A01G554600 chr7A 82.542 716 76 23 1658 2354 586204904 586205589 5.630000e-163 584.0
3 TraesCS7A01G554600 chr7A 87.281 456 49 5 1006 1453 106411990 106412444 2.690000e-141 512.0
4 TraesCS7A01G554600 chr7A 79.556 225 35 7 1644 1860 106420208 106420429 2.430000e-32 150.0
5 TraesCS7A01G554600 chr6A 92.781 1122 60 10 2798 3910 515061646 515060537 0.000000e+00 1604.0
6 TraesCS7A01G554600 chr6A 92.437 476 16 9 318 785 515062325 515061862 0.000000e+00 662.0
7 TraesCS7A01G554600 chr6A 89.318 337 14 5 1 336 515062703 515062388 1.690000e-108 403.0
8 TraesCS7A01G554600 chr6A 96.380 221 8 0 2362 2582 515061861 515061641 7.980000e-97 364.0
9 TraesCS7A01G554600 chr6A 94.248 226 12 1 2576 2800 601390502 601390277 1.040000e-90 344.0
10 TraesCS7A01G554600 chr6A 93.421 228 14 1 2574 2800 899233 899006 1.740000e-88 337.0
11 TraesCS7A01G554600 chr6A 81.818 88 16 0 2319 2406 596209357 596209270 1.510000e-09 75.0
12 TraesCS7A01G554600 chr3B 90.550 963 72 7 2798 3757 782441412 782442358 0.000000e+00 1256.0
13 TraesCS7A01G554600 chr3B 91.047 793 55 9 1005 1789 5346813 5346029 0.000000e+00 1057.0
14 TraesCS7A01G554600 chr3B 96.379 359 11 2 2798 3154 5331987 5331629 1.210000e-164 590.0
15 TraesCS7A01G554600 chr3B 82.238 563 49 22 1745 2297 5346155 5345634 4.640000e-119 438.0
16 TraesCS7A01G554600 chr3B 78.774 212 30 6 1644 1850 5346207 5346006 1.140000e-25 128.0
17 TraesCS7A01G554600 chr3B 80.451 133 24 2 2255 2386 22125391 22125260 2.490000e-17 100.0
18 TraesCS7A01G554600 chr3B 85.542 83 12 0 1881 1963 5346086 5346004 1.940000e-13 87.9
19 TraesCS7A01G554600 chr5B 87.248 1043 122 7 2873 3910 615957939 615956903 0.000000e+00 1179.0
20 TraesCS7A01G554600 chr5B 85.451 921 113 14 2987 3904 257187608 257188510 0.000000e+00 939.0
21 TraesCS7A01G554600 chr5B 78.890 739 120 23 1126 1837 615958714 615957985 5.920000e-128 468.0
22 TraesCS7A01G554600 chr5B 93.274 223 7 6 319 540 80602332 80602547 4.870000e-84 322.0
23 TraesCS7A01G554600 chr5B 92.825 223 8 6 319 540 80197854 80198069 2.270000e-82 316.0
24 TraesCS7A01G554600 chr5B 81.429 420 36 17 1 408 615960910 615960521 4.910000e-79 305.0
25 TraesCS7A01G554600 chr5B 86.219 283 29 7 636 914 690881860 690882136 8.210000e-77 298.0
26 TraesCS7A01G554600 chr5B 79.389 131 27 0 2255 2385 538315984 538315854 4.160000e-15 93.5
27 TraesCS7A01G554600 chr2A 86.187 1057 134 7 2806 3859 192131276 192130229 0.000000e+00 1133.0
28 TraesCS7A01G554600 chr2A 96.903 226 7 0 2575 2800 35560290 35560065 2.850000e-101 379.0
29 TraesCS7A01G554600 chr2A 87.013 77 9 1 1978 2053 669626777 669626701 6.960000e-13 86.1
30 TraesCS7A01G554600 chr1B 85.758 983 132 6 2913 3893 549765811 549766787 0.000000e+00 1033.0
31 TraesCS7A01G554600 chr1B 86.334 922 110 10 2987 3904 74830521 74829612 0.000000e+00 990.0
32 TraesCS7A01G554600 chr1B 86.226 922 111 11 2987 3904 667761167 667762076 0.000000e+00 985.0
33 TraesCS7A01G554600 chr1B 81.570 917 153 10 2809 3719 348489308 348488402 0.000000e+00 743.0
34 TraesCS7A01G554600 chr1B 93.151 73 5 0 1005 1077 42310509 42310437 1.490000e-19 108.0
35 TraesCS7A01G554600 chr1B 74.502 251 41 15 637 871 534300387 534300630 1.940000e-13 87.9
36 TraesCS7A01G554600 chr1B 75.369 203 33 6 1747 1945 549756046 549756235 9.000000e-12 82.4
37 TraesCS7A01G554600 chrUn 84.304 841 109 15 1006 1827 85448399 85447563 0.000000e+00 800.0
38 TraesCS7A01G554600 chrUn 84.304 841 109 15 1006 1827 85452024 85451188 0.000000e+00 800.0
39 TraesCS7A01G554600 chrUn 91.403 221 11 6 319 538 92774506 92774719 2.950000e-76 296.0
40 TraesCS7A01G554600 chrUn 77.124 153 32 3 2255 2406 85071355 85071505 6.960000e-13 86.1
41 TraesCS7A01G554600 chrUn 100.000 36 0 0 566 601 119209644 119209609 2.520000e-07 67.6
42 TraesCS7A01G554600 chr3A 82.919 884 134 10 2798 3673 54467180 54466306 0.000000e+00 780.0
43 TraesCS7A01G554600 chr3A 94.690 226 11 1 2575 2799 629675109 629674884 2.240000e-92 350.0
44 TraesCS7A01G554600 chr3A 85.882 85 7 3 787 871 12523263 12523184 6.960000e-13 86.1
45 TraesCS7A01G554600 chr2B 90.141 426 39 3 2060 2484 673981669 673982092 5.710000e-153 551.0
46 TraesCS7A01G554600 chr2B 87.895 380 39 2 1121 1493 673981243 673981622 1.290000e-119 440.0
47 TraesCS7A01G554600 chr2B 84.800 375 39 11 636 1005 54454394 54454033 1.030000e-95 361.0
48 TraesCS7A01G554600 chr2B 88.596 114 13 0 1006 1119 673981096 673981209 5.270000e-29 139.0
49 TraesCS7A01G554600 chr2B 93.182 44 2 1 562 604 721211802 721211759 3.260000e-06 63.9
50 TraesCS7A01G554600 chr2D 87.131 373 32 9 636 1005 130090374 130090733 3.640000e-110 409.0
51 TraesCS7A01G554600 chr2D 92.825 223 4 9 319 537 476725793 476726007 2.930000e-81 313.0
52 TraesCS7A01G554600 chr2D 85.957 235 32 1 3 237 476725548 476725781 2.330000e-62 250.0
53 TraesCS7A01G554600 chr2D 91.589 107 7 2 1497 1603 314506872 314506768 3.150000e-31 147.0
54 TraesCS7A01G554600 chr4A 84.987 373 42 8 636 1005 115991302 115990941 2.220000e-97 366.0
55 TraesCS7A01G554600 chr4D 94.298 228 12 1 2575 2801 408266941 408267168 8.040000e-92 348.0
56 TraesCS7A01G554600 chr7D 93.450 229 12 3 2575 2801 383866174 383866401 1.740000e-88 337.0
57 TraesCS7A01G554600 chr7D 93.421 228 12 2 2576 2800 34580033 34579806 6.260000e-88 335.0
58 TraesCS7A01G554600 chr7D 100.000 36 0 0 566 601 191731326 191731361 2.520000e-07 67.6
59 TraesCS7A01G554600 chr5D 93.363 226 14 1 2576 2800 53986768 53986993 2.250000e-87 333.0
60 TraesCS7A01G554600 chr5D 93.636 220 14 0 2579 2798 315208527 315208308 2.910000e-86 329.0
61 TraesCS7A01G554600 chr5D 90.783 217 7 7 323 539 69985180 69984977 1.070000e-70 278.0
62 TraesCS7A01G554600 chr5D 83.871 248 39 1 1 248 69985454 69985208 6.530000e-58 235.0
63 TraesCS7A01G554600 chr3D 92.308 221 9 6 320 539 467783118 467782905 1.360000e-79 307.0
64 TraesCS7A01G554600 chr3D 91.441 222 11 5 319 539 166511741 166511955 8.210000e-77 298.0
65 TraesCS7A01G554600 chr1D 92.308 221 9 6 320 539 41297493 41297280 1.360000e-79 307.0
66 TraesCS7A01G554600 chr1D 78.972 214 33 4 1745 1947 15854432 15854220 6.810000e-28 135.0
67 TraesCS7A01G554600 chr4B 81.586 353 61 2 2136 2484 613092154 613091802 4.940000e-74 289.0
68 TraesCS7A01G554600 chr4B 100.000 36 0 0 566 601 447953867 447953902 2.520000e-07 67.6
69 TraesCS7A01G554600 chr6B 73.487 347 87 5 2141 2484 6469043 6468699 4.100000e-25 126.0
70 TraesCS7A01G554600 chr5A 89.831 59 2 4 543 600 482130569 482130624 5.420000e-09 73.1
71 TraesCS7A01G554600 chr7B 100.000 36 0 0 566 601 420457013 420457048 2.520000e-07 67.6
72 TraesCS7A01G554600 chr7B 100.000 36 0 0 566 601 451446099 451446134 2.520000e-07 67.6
73 TraesCS7A01G554600 chr6D 100.000 36 0 0 566 601 263618689 263618654 2.520000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G554600 chr7A 726904999 726908908 3909 True 7221.000000 7221 100.000000 1 3910 1 chr7A.!!$R1 3909
1 TraesCS7A01G554600 chr7A 586204904 586206701 1797 False 922.000000 1260 84.948000 1658 3910 2 chr7A.!!$F3 2252
2 TraesCS7A01G554600 chr6A 515060537 515062703 2166 True 758.250000 1604 92.729000 1 3910 4 chr6A.!!$R4 3909
3 TraesCS7A01G554600 chr3B 782441412 782442358 946 False 1256.000000 1256 90.550000 2798 3757 1 chr3B.!!$F1 959
4 TraesCS7A01G554600 chr3B 5345634 5346813 1179 True 427.725000 1057 84.400250 1005 2297 4 chr3B.!!$R3 1292
5 TraesCS7A01G554600 chr5B 257187608 257188510 902 False 939.000000 939 85.451000 2987 3904 1 chr5B.!!$F3 917
6 TraesCS7A01G554600 chr5B 615956903 615960910 4007 True 650.666667 1179 82.522333 1 3910 3 chr5B.!!$R2 3909
7 TraesCS7A01G554600 chr2A 192130229 192131276 1047 True 1133.000000 1133 86.187000 2806 3859 1 chr2A.!!$R2 1053
8 TraesCS7A01G554600 chr1B 549765811 549766787 976 False 1033.000000 1033 85.758000 2913 3893 1 chr1B.!!$F3 980
9 TraesCS7A01G554600 chr1B 74829612 74830521 909 True 990.000000 990 86.334000 2987 3904 1 chr1B.!!$R2 917
10 TraesCS7A01G554600 chr1B 667761167 667762076 909 False 985.000000 985 86.226000 2987 3904 1 chr1B.!!$F4 917
11 TraesCS7A01G554600 chr1B 348488402 348489308 906 True 743.000000 743 81.570000 2809 3719 1 chr1B.!!$R3 910
12 TraesCS7A01G554600 chrUn 85447563 85452024 4461 True 800.000000 800 84.304000 1006 1827 2 chrUn.!!$R2 821
13 TraesCS7A01G554600 chr3A 54466306 54467180 874 True 780.000000 780 82.919000 2798 3673 1 chr3A.!!$R2 875
14 TraesCS7A01G554600 chr2B 673981096 673982092 996 False 376.666667 551 88.877333 1006 2484 3 chr2B.!!$F1 1478

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
751 1732 0.040157 CAGGCACAACCACACAATCG 60.040 55.0 0.00 0.00 43.14 3.34 F
1238 2480 0.035820 ATTTCGTTAGGGAAGCGGCA 60.036 50.0 1.45 0.00 0.00 5.69 F
2586 4599 0.038310 GCCTCAACTAAGGGCCAGTT 59.962 55.0 6.18 4.61 39.96 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1794 3061 0.804989 GCACTGCATGGGTGTACTTC 59.195 55.0 6.46 0.00 37.07 3.01 R
2804 4817 0.317479 ACAGGTAAGTGAGTCACCGC 59.683 55.0 19.71 9.82 37.42 5.68 R
3548 6555 0.327480 TGTCTGGGCACTGGGGATAT 60.327 55.0 0.00 0.00 0.00 1.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
62 63 3.736100 TTGCAGTTCGCCGCATGG 61.736 61.111 0.00 0.00 41.33 3.66
133 134 0.895530 ACGTACACTATGCCACTGCT 59.104 50.000 0.00 0.00 38.71 4.24
136 137 2.796383 CGTACACTATGCCACTGCTCTC 60.796 54.545 0.00 0.00 38.71 3.20
178 179 2.788786 GCATGATTATCCGGCAAAAACG 59.211 45.455 0.00 0.00 0.00 3.60
198 199 0.532573 AGTCATGTACTCACGGGCTG 59.467 55.000 0.00 0.00 30.33 4.85
200 201 1.079197 CATGTACTCACGGGCTGCA 60.079 57.895 0.50 0.00 0.00 4.41
201 202 1.079127 ATGTACTCACGGGCTGCAC 60.079 57.895 0.50 0.00 0.00 4.57
202 203 1.544825 ATGTACTCACGGGCTGCACT 61.545 55.000 0.00 0.00 0.00 4.40
354 457 7.667219 TCTCTCTCCTTTTGCTTTTTGATGTAT 59.333 33.333 0.00 0.00 0.00 2.29
355 458 8.181904 TCTCTCCTTTTGCTTTTTGATGTATT 57.818 30.769 0.00 0.00 0.00 1.89
357 460 8.816640 TCTCCTTTTGCTTTTTGATGTATTTC 57.183 30.769 0.00 0.00 0.00 2.17
359 462 9.264719 CTCCTTTTGCTTTTTGATGTATTTCTT 57.735 29.630 0.00 0.00 0.00 2.52
360 463 9.612066 TCCTTTTGCTTTTTGATGTATTTCTTT 57.388 25.926 0.00 0.00 0.00 2.52
361 464 9.654417 CCTTTTGCTTTTTGATGTATTTCTTTG 57.346 29.630 0.00 0.00 0.00 2.77
362 465 9.654417 CTTTTGCTTTTTGATGTATTTCTTTGG 57.346 29.630 0.00 0.00 0.00 3.28
363 466 8.729805 TTTGCTTTTTGATGTATTTCTTTGGT 57.270 26.923 0.00 0.00 0.00 3.67
364 467 9.823647 TTTGCTTTTTGATGTATTTCTTTGGTA 57.176 25.926 0.00 0.00 0.00 3.25
365 468 8.810652 TGCTTTTTGATGTATTTCTTTGGTAC 57.189 30.769 0.00 0.00 0.00 3.34
366 469 7.593273 TGCTTTTTGATGTATTTCTTTGGTACG 59.407 33.333 0.00 0.00 0.00 3.67
367 470 7.593644 GCTTTTTGATGTATTTCTTTGGTACGT 59.406 33.333 0.00 0.00 0.00 3.57
368 471 8.789881 TTTTTGATGTATTTCTTTGGTACGTG 57.210 30.769 0.00 0.00 0.00 4.49
385 488 0.524414 GTGTTCATGCATGCAGCTCA 59.476 50.000 26.69 17.91 45.94 4.26
539 822 7.395190 TCTACAAGCAAGTTTGATAATGCAT 57.605 32.000 3.63 0.00 41.18 3.96
552 835 8.547894 GTTTGATAATGCATCGTATGTAGTTCA 58.452 33.333 0.00 0.00 36.33 3.18
606 1223 8.882415 TTTATGAACGGATGGAGTATTAGTTC 57.118 34.615 0.00 0.00 36.68 3.01
701 1682 3.731652 TGAGCTTTTGTGGTTTCATGG 57.268 42.857 0.00 0.00 0.00 3.66
751 1732 0.040157 CAGGCACAACCACACAATCG 60.040 55.000 0.00 0.00 43.14 3.34
800 1781 8.246180 GTCTGAAGGAATGAAAATAGAAATGCA 58.754 33.333 0.00 0.00 0.00 3.96
801 1782 8.805175 TCTGAAGGAATGAAAATAGAAATGCAA 58.195 29.630 0.00 0.00 0.00 4.08
802 1783 9.426837 CTGAAGGAATGAAAATAGAAATGCAAA 57.573 29.630 0.00 0.00 0.00 3.68
803 1784 9.426837 TGAAGGAATGAAAATAGAAATGCAAAG 57.573 29.630 0.00 0.00 0.00 2.77
804 1785 9.643693 GAAGGAATGAAAATAGAAATGCAAAGA 57.356 29.630 0.00 0.00 0.00 2.52
814 1795 7.823149 ATAGAAATGCAAAGAATGTTTCTGC 57.177 32.000 15.94 0.00 40.59 4.26
815 1796 5.603596 AGAAATGCAAAGAATGTTTCTGCA 58.396 33.333 8.10 6.62 41.19 4.41
817 1798 7.380536 AGAAATGCAAAGAATGTTTCTGCATA 58.619 30.769 13.84 0.00 44.07 3.14
819 1800 9.304731 GAAATGCAAAGAATGTTTCTGCATATA 57.695 29.630 13.84 0.00 44.07 0.86
820 1801 9.826574 AAATGCAAAGAATGTTTCTGCATATAT 57.173 25.926 13.84 5.25 44.07 0.86
822 1803 9.826574 ATGCAAAGAATGTTTCTGCATATATTT 57.173 25.926 12.54 0.00 43.46 1.40
849 1830 9.950496 TTTGGAAGATGATTTAGGCTATCTATC 57.050 33.333 0.00 0.29 30.19 2.08
850 1831 8.083828 TGGAAGATGATTTAGGCTATCTATCC 57.916 38.462 0.00 6.74 32.99 2.59
851 1832 7.903481 TGGAAGATGATTTAGGCTATCTATCCT 59.097 37.037 17.08 7.54 33.24 3.24
853 1834 8.907829 AAGATGATTTAGGCTATCTATCCTCA 57.092 34.615 0.00 0.00 34.02 3.86
854 1835 9.504705 AAGATGATTTAGGCTATCTATCCTCAT 57.495 33.333 0.00 0.00 34.02 2.90
855 1836 9.146586 AGATGATTTAGGCTATCTATCCTCATC 57.853 37.037 0.00 6.28 37.52 2.92
856 1837 9.146586 GATGATTTAGGCTATCTATCCTCATCT 57.853 37.037 0.00 0.00 36.24 2.90
858 1839 8.118600 TGATTTAGGCTATCTATCCTCATCTGA 58.881 37.037 0.00 0.00 34.02 3.27
859 1840 9.146586 GATTTAGGCTATCTATCCTCATCTGAT 57.853 37.037 0.00 0.00 34.02 2.90
861 1842 6.089808 AGGCTATCTATCCTCATCTGATGA 57.910 41.667 18.61 18.61 37.76 2.92
873 1854 5.810080 TCATCTGATGAGCATGAGATCTT 57.190 39.130 16.06 0.00 39.26 2.40
874 1855 6.176014 TCATCTGATGAGCATGAGATCTTT 57.824 37.500 16.06 0.00 39.26 2.52
875 1856 5.992217 TCATCTGATGAGCATGAGATCTTTG 59.008 40.000 16.06 0.00 39.26 2.77
876 1857 5.609533 TCTGATGAGCATGAGATCTTTGA 57.390 39.130 10.00 0.00 0.00 2.69
877 1858 6.176014 TCTGATGAGCATGAGATCTTTGAT 57.824 37.500 10.00 4.29 0.00 2.57
878 1859 6.592870 TCTGATGAGCATGAGATCTTTGATT 58.407 36.000 10.00 0.00 0.00 2.57
879 1860 6.483640 TCTGATGAGCATGAGATCTTTGATTG 59.516 38.462 10.00 0.39 0.00 2.67
880 1861 6.354130 TGATGAGCATGAGATCTTTGATTGA 58.646 36.000 10.00 0.00 0.00 2.57
881 1862 6.826741 TGATGAGCATGAGATCTTTGATTGAA 59.173 34.615 10.00 0.00 0.00 2.69
882 1863 6.432607 TGAGCATGAGATCTTTGATTGAAC 57.567 37.500 10.00 0.00 0.00 3.18
883 1864 6.178324 TGAGCATGAGATCTTTGATTGAACT 58.822 36.000 10.00 0.00 0.00 3.01
884 1865 7.333323 TGAGCATGAGATCTTTGATTGAACTA 58.667 34.615 10.00 0.00 0.00 2.24
885 1866 7.279536 TGAGCATGAGATCTTTGATTGAACTAC 59.720 37.037 10.00 0.00 0.00 2.73
886 1867 6.257411 AGCATGAGATCTTTGATTGAACTACG 59.743 38.462 10.00 0.00 0.00 3.51
887 1868 6.417327 CATGAGATCTTTGATTGAACTACGC 58.583 40.000 0.00 0.00 0.00 4.42
888 1869 4.562789 TGAGATCTTTGATTGAACTACGCG 59.437 41.667 3.53 3.53 0.00 6.01
889 1870 3.865745 AGATCTTTGATTGAACTACGCGG 59.134 43.478 12.47 0.00 0.00 6.46
890 1871 3.306917 TCTTTGATTGAACTACGCGGA 57.693 42.857 12.47 0.00 0.00 5.54
891 1872 2.991190 TCTTTGATTGAACTACGCGGAC 59.009 45.455 12.47 0.00 0.00 4.79
892 1873 2.442212 TTGATTGAACTACGCGGACA 57.558 45.000 12.47 0.00 0.00 4.02
893 1874 2.665649 TGATTGAACTACGCGGACAT 57.334 45.000 12.47 0.00 0.00 3.06
894 1875 3.786516 TGATTGAACTACGCGGACATA 57.213 42.857 12.47 0.00 0.00 2.29
895 1876 4.316205 TGATTGAACTACGCGGACATAT 57.684 40.909 12.47 0.00 0.00 1.78
896 1877 5.441709 TGATTGAACTACGCGGACATATA 57.558 39.130 12.47 0.00 0.00 0.86
897 1878 6.020971 TGATTGAACTACGCGGACATATAT 57.979 37.500 12.47 0.00 0.00 0.86
898 1879 6.452242 TGATTGAACTACGCGGACATATATT 58.548 36.000 12.47 0.00 0.00 1.28
899 1880 7.595604 TGATTGAACTACGCGGACATATATTA 58.404 34.615 12.47 0.00 0.00 0.98
900 1881 7.539710 TGATTGAACTACGCGGACATATATTAC 59.460 37.037 12.47 0.00 0.00 1.89
901 1882 5.384787 TGAACTACGCGGACATATATTACG 58.615 41.667 12.47 0.00 0.00 3.18
902 1883 4.346734 ACTACGCGGACATATATTACGG 57.653 45.455 12.47 0.00 0.00 4.02
903 1884 4.002982 ACTACGCGGACATATATTACGGA 58.997 43.478 12.47 0.00 0.00 4.69
905 1886 5.817296 ACTACGCGGACATATATTACGGATA 59.183 40.000 12.47 0.00 0.00 2.59
907 1888 4.036027 ACGCGGACATATATTACGGATAGG 59.964 45.833 12.47 0.00 0.00 2.57
910 1891 5.747197 GCGGACATATATTACGGATAGGTTG 59.253 44.000 0.00 0.00 0.00 3.77
919 1900 1.628846 ACGGATAGGTTGGTGCTCTTT 59.371 47.619 0.00 0.00 0.00 2.52
920 1901 2.039879 ACGGATAGGTTGGTGCTCTTTT 59.960 45.455 0.00 0.00 0.00 2.27
921 1902 3.081804 CGGATAGGTTGGTGCTCTTTTT 58.918 45.455 0.00 0.00 0.00 1.94
928 1909 2.346766 TGGTGCTCTTTTTCTCTGCA 57.653 45.000 0.00 0.00 0.00 4.41
929 1910 2.867624 TGGTGCTCTTTTTCTCTGCAT 58.132 42.857 0.00 0.00 36.04 3.96
930 1911 3.225104 TGGTGCTCTTTTTCTCTGCATT 58.775 40.909 0.00 0.00 36.04 3.56
931 1912 3.638160 TGGTGCTCTTTTTCTCTGCATTT 59.362 39.130 0.00 0.00 36.04 2.32
933 1914 5.052481 GGTGCTCTTTTTCTCTGCATTTTT 58.948 37.500 0.00 0.00 36.04 1.94
976 1957 7.561021 TTTTTGTATTAAGCTGACAGACACA 57.439 32.000 6.65 0.00 0.00 3.72
977 1958 6.785488 TTTGTATTAAGCTGACAGACACAG 57.215 37.500 6.65 0.00 38.27 3.66
999 1980 3.872182 GCTCTGTTAAGCTACTTTAGGGC 59.128 47.826 0.00 0.00 39.27 5.19
1000 1981 4.623171 GCTCTGTTAAGCTACTTTAGGGCA 60.623 45.833 5.27 0.00 39.27 5.36
1002 1983 5.428253 TCTGTTAAGCTACTTTAGGGCATG 58.572 41.667 0.00 0.00 0.00 4.06
1003 1984 5.188948 TCTGTTAAGCTACTTTAGGGCATGA 59.811 40.000 0.00 0.00 0.00 3.07
1047 2204 3.055719 CATTCAGGGCGGCGTGTT 61.056 61.111 27.65 15.77 0.00 3.32
1048 2205 2.282180 ATTCAGGGCGGCGTGTTT 60.282 55.556 27.65 15.44 0.00 2.83
1083 2240 4.735132 CCGCTCCGTTCTTGCCGA 62.735 66.667 0.00 0.00 0.00 5.54
1173 2415 1.895020 TAGGTGGCCAGCGTTTCGAT 61.895 55.000 28.24 12.32 0.00 3.59
1210 2452 1.342819 GTGGAGATCTTGATAGCCGCT 59.657 52.381 0.00 0.00 0.00 5.52
1238 2480 0.035820 ATTTCGTTAGGGAAGCGGCA 60.036 50.000 1.45 0.00 0.00 5.69
1297 2541 3.006323 GCTACATATGGGAGTGTCTCTGG 59.994 52.174 7.80 0.00 0.00 3.86
1306 2550 3.323979 GGGAGTGTCTCTGGTTGTTTCTA 59.676 47.826 0.00 0.00 0.00 2.10
1324 2568 1.063174 CTATGCGTTTCTTCCTGCTGC 59.937 52.381 0.00 0.00 0.00 5.25
1385 2636 3.557595 CGATCATTACTGCTGGTTCTTCC 59.442 47.826 0.00 0.00 0.00 3.46
1386 2637 4.517285 GATCATTACTGCTGGTTCTTCCA 58.483 43.478 0.00 0.00 45.01 3.53
1394 2648 1.264288 GCTGGTTCTTCCACGTTTGAG 59.736 52.381 0.00 0.00 41.93 3.02
1407 2661 1.270625 CGTTTGAGGGCCTTGTGTCTA 60.271 52.381 7.89 0.00 0.00 2.59
1425 2679 4.545706 CTGCTCGGCCCGCCATTA 62.546 66.667 6.52 0.00 35.37 1.90
1526 2793 2.565834 GGCCTCTTCTACTGGTTGTACA 59.434 50.000 0.00 0.00 0.00 2.90
1532 2799 6.351371 CCTCTTCTACTGGTTGTACATGTCAT 60.351 42.308 0.00 0.00 0.00 3.06
1547 2814 2.046023 CATTGCTGGCCCAGTCGA 60.046 61.111 13.35 5.11 33.43 4.20
1572 2839 1.300931 GAAGACACCAGCGTGCAGA 60.301 57.895 0.00 0.00 44.40 4.26
1614 2881 0.099259 ATGCACGGTCAAATGATGCG 59.901 50.000 0.00 0.00 39.18 4.73
1793 3060 3.243128 CACGCATGCACTCGAACA 58.757 55.556 19.57 0.00 0.00 3.18
1794 3061 1.131218 CACGCATGCACTCGAACAG 59.869 57.895 19.57 0.00 0.00 3.16
1797 3064 0.094216 CGCATGCACTCGAACAGAAG 59.906 55.000 19.57 0.00 0.00 2.85
1798 3065 1.151668 GCATGCACTCGAACAGAAGT 58.848 50.000 14.21 0.00 0.00 3.01
1799 3066 2.337583 GCATGCACTCGAACAGAAGTA 58.662 47.619 14.21 0.00 0.00 2.24
1800 3067 2.092838 GCATGCACTCGAACAGAAGTAC 59.907 50.000 14.21 0.00 0.00 2.73
1801 3068 3.317150 CATGCACTCGAACAGAAGTACA 58.683 45.455 0.00 0.00 0.00 2.90
1803 3070 2.059541 GCACTCGAACAGAAGTACACC 58.940 52.381 0.00 0.00 0.00 4.16
1813 3083 0.804989 GAAGTACACCCATGCAGTGC 59.195 55.000 8.58 8.58 38.87 4.40
1818 3088 4.953010 ACCCATGCAGTGCACGCA 62.953 61.111 29.00 29.00 43.04 5.24
1832 3102 2.334971 CACGCATGCAGTTCAATGAA 57.665 45.000 19.57 0.00 0.00 2.57
1836 3106 4.858140 CACGCATGCAGTTCAATGAAAATA 59.142 37.500 19.57 0.00 0.00 1.40
1837 3107 5.517411 CACGCATGCAGTTCAATGAAAATAT 59.483 36.000 19.57 0.00 0.00 1.28
1840 3110 5.277154 GCATGCAGTTCAATGAAAATATGCC 60.277 40.000 14.21 4.70 33.14 4.40
1841 3111 5.664294 TGCAGTTCAATGAAAATATGCCT 57.336 34.783 15.96 0.00 0.00 4.75
1842 3112 5.412640 TGCAGTTCAATGAAAATATGCCTG 58.587 37.500 15.96 10.51 0.00 4.85
1843 3113 5.185442 TGCAGTTCAATGAAAATATGCCTGA 59.815 36.000 15.96 1.90 0.00 3.86
1844 3114 5.517770 GCAGTTCAATGAAAATATGCCTGAC 59.482 40.000 10.42 1.20 0.00 3.51
1845 3115 5.740569 CAGTTCAATGAAAATATGCCTGACG 59.259 40.000 0.00 0.00 0.00 4.35
1846 3116 4.291540 TCAATGAAAATATGCCTGACGC 57.708 40.909 0.00 0.00 38.31 5.19
1871 3141 3.847037 GCGCATGCAATCCAATAAAAG 57.153 42.857 19.57 0.00 42.15 2.27
1879 3149 3.181504 GCAATCCAATAAAAGTACGCCGT 60.182 43.478 0.00 0.00 0.00 5.68
1886 3163 2.088950 AAAAGTACGCCGTAGTGCAT 57.911 45.000 5.20 0.00 0.00 3.96
1947 3272 2.995258 ACGCATGCAATCCAATGAAAAC 59.005 40.909 19.57 0.00 0.00 2.43
1950 3275 3.181528 GCATGCAATCCAATGAAAACACG 60.182 43.478 14.21 0.00 0.00 4.49
1952 3277 1.386412 GCAATCCAATGAAAACACGCG 59.614 47.619 3.53 3.53 0.00 6.01
1980 3326 1.858091 CACTCCAGTAATGCTAGCCG 58.142 55.000 13.29 0.00 0.00 5.52
1986 3332 3.196039 TCCAGTAATGCTAGCCGTTTACA 59.804 43.478 23.27 9.32 0.00 2.41
2005 3351 4.198028 ACAGGGTTATTACGGAGTTGAC 57.802 45.455 0.00 0.00 37.78 3.18
2034 3380 3.181476 GGCAGATTATGGTTGGCGATTTT 60.181 43.478 0.00 0.00 0.00 1.82
2109 3456 1.967779 GCTGTTTGGGTGGGTATTTGT 59.032 47.619 0.00 0.00 0.00 2.83
2120 3467 2.647299 TGGGTATTTGTGTCTGGTCCAT 59.353 45.455 0.00 0.00 0.00 3.41
2251 4262 1.234821 TTGACAGGTCAATTGGTCGC 58.765 50.000 10.63 0.00 43.90 5.19
2269 4280 1.077858 CCCTTCTGCTCTTCCTGCC 60.078 63.158 0.00 0.00 0.00 4.85
2279 4290 1.002134 CTTCCTGCCGGTGTCCATT 60.002 57.895 1.90 0.00 0.00 3.16
2313 4324 2.439960 TTGGTGCTCCGTCTGTGGT 61.440 57.895 0.00 0.00 36.30 4.16
2338 4350 1.239347 GTCCAAGAGTGGTGCCTTTC 58.761 55.000 0.00 0.00 46.11 2.62
2343 4355 1.227853 GAGTGGTGCCTTTCCGTGT 60.228 57.895 0.00 0.00 0.00 4.49
2385 4397 4.020485 GCCTACTCCTCTTGGTAAGTTCAA 60.020 45.833 0.00 0.00 34.23 2.69
2431 4444 5.067023 GCTGCTGCTACTGATAATTTCCTTT 59.933 40.000 8.53 0.00 36.03 3.11
2516 4529 8.047310 TCTTTCCTTTTATCTCCATGTAGAACC 58.953 37.037 0.00 0.00 0.00 3.62
2552 4565 3.187227 ACTGAAGTAGCGTGCAGAAAATG 59.813 43.478 0.00 0.00 32.86 2.32
2575 4588 1.978617 CCATTTGGCGGCCTCAACT 60.979 57.895 21.46 0.00 0.00 3.16
2576 4589 0.679640 CCATTTGGCGGCCTCAACTA 60.680 55.000 21.46 0.00 0.00 2.24
2577 4590 1.173043 CATTTGGCGGCCTCAACTAA 58.827 50.000 21.46 1.36 0.00 2.24
2578 4591 1.133025 CATTTGGCGGCCTCAACTAAG 59.867 52.381 21.46 0.00 0.00 2.18
2579 4592 0.608035 TTTGGCGGCCTCAACTAAGG 60.608 55.000 21.46 0.00 39.62 2.69
2580 4593 2.124695 GGCGGCCTCAACTAAGGG 60.125 66.667 12.87 0.00 36.88 3.95
2584 4597 4.645809 GCCTCAACTAAGGGCCAG 57.354 61.111 6.18 0.00 39.96 4.85
2585 4598 1.685820 GCCTCAACTAAGGGCCAGT 59.314 57.895 6.18 0.00 39.96 4.00
2586 4599 0.038310 GCCTCAACTAAGGGCCAGTT 59.962 55.000 6.18 4.61 39.96 3.16
2587 4600 1.950954 GCCTCAACTAAGGGCCAGTTC 60.951 57.143 6.18 0.00 39.96 3.01
2588 4601 1.630878 CCTCAACTAAGGGCCAGTTCT 59.369 52.381 6.18 0.00 33.99 3.01
2589 4602 2.040412 CCTCAACTAAGGGCCAGTTCTT 59.960 50.000 6.18 0.29 33.99 2.52
2590 4603 3.498661 CCTCAACTAAGGGCCAGTTCTTT 60.499 47.826 6.18 0.00 33.99 2.52
2591 4604 4.145052 CTCAACTAAGGGCCAGTTCTTTT 58.855 43.478 6.18 0.00 33.99 2.27
2592 4605 4.542697 TCAACTAAGGGCCAGTTCTTTTT 58.457 39.130 6.18 0.00 33.99 1.94
2620 4633 4.535526 TTTTTGGGCTTCCAGAATAAGC 57.464 40.909 0.00 0.00 46.90 3.09
2621 4634 3.456380 TTTGGGCTTCCAGAATAAGCT 57.544 42.857 7.65 0.00 46.81 3.74
2622 4635 2.425143 TGGGCTTCCAGAATAAGCTG 57.575 50.000 7.65 0.00 46.81 4.24
2623 4636 1.028130 GGGCTTCCAGAATAAGCTGC 58.972 55.000 7.65 0.00 46.81 5.25
2624 4637 1.028130 GGCTTCCAGAATAAGCTGCC 58.972 55.000 7.65 0.00 46.81 4.85
2625 4638 1.028130 GCTTCCAGAATAAGCTGCCC 58.972 55.000 0.00 0.00 44.75 5.36
2626 4639 1.409381 GCTTCCAGAATAAGCTGCCCT 60.409 52.381 0.00 0.00 44.75 5.19
2627 4640 2.570135 CTTCCAGAATAAGCTGCCCTC 58.430 52.381 0.00 0.00 34.56 4.30
2628 4641 1.885049 TCCAGAATAAGCTGCCCTCT 58.115 50.000 0.00 0.00 34.56 3.69
2629 4642 3.046283 TCCAGAATAAGCTGCCCTCTA 57.954 47.619 0.00 0.00 34.56 2.43
2630 4643 2.700897 TCCAGAATAAGCTGCCCTCTAC 59.299 50.000 0.00 0.00 34.56 2.59
2631 4644 2.224402 CCAGAATAAGCTGCCCTCTACC 60.224 54.545 0.00 0.00 34.56 3.18
2632 4645 2.050918 AGAATAAGCTGCCCTCTACCC 58.949 52.381 0.00 0.00 0.00 3.69
2633 4646 1.768870 GAATAAGCTGCCCTCTACCCA 59.231 52.381 0.00 0.00 0.00 4.51
2634 4647 1.428869 ATAAGCTGCCCTCTACCCAG 58.571 55.000 0.00 0.00 0.00 4.45
2636 4649 3.086600 GCTGCCCTCTACCCAGCT 61.087 66.667 4.74 0.00 46.28 4.24
2637 4650 2.674220 GCTGCCCTCTACCCAGCTT 61.674 63.158 4.74 0.00 46.28 3.74
2638 4651 1.338136 GCTGCCCTCTACCCAGCTTA 61.338 60.000 4.74 0.00 46.28 3.09
2639 4652 1.428869 CTGCCCTCTACCCAGCTTAT 58.571 55.000 0.00 0.00 0.00 1.73
2640 4653 1.771255 CTGCCCTCTACCCAGCTTATT 59.229 52.381 0.00 0.00 0.00 1.40
2641 4654 1.768870 TGCCCTCTACCCAGCTTATTC 59.231 52.381 0.00 0.00 0.00 1.75
2642 4655 2.050918 GCCCTCTACCCAGCTTATTCT 58.949 52.381 0.00 0.00 0.00 2.40
2643 4656 3.240302 GCCCTCTACCCAGCTTATTCTA 58.760 50.000 0.00 0.00 0.00 2.10
2644 4657 3.259625 GCCCTCTACCCAGCTTATTCTAG 59.740 52.174 0.00 0.00 0.00 2.43
2645 4658 4.742012 CCCTCTACCCAGCTTATTCTAGA 58.258 47.826 0.00 0.00 0.00 2.43
2646 4659 5.148502 CCCTCTACCCAGCTTATTCTAGAA 58.851 45.833 7.82 7.82 0.00 2.10
2647 4660 5.245075 CCCTCTACCCAGCTTATTCTAGAAG 59.755 48.000 11.53 0.00 0.00 2.85
2660 4673 9.591792 GCTTATTCTAGAAGCCAAATCAATTTT 57.408 29.630 11.53 0.00 42.90 1.82
2686 4699 7.730364 TTCTTTTGAAAGCCTACTAGTCAAG 57.270 36.000 0.00 0.00 33.77 3.02
2687 4700 6.827727 TCTTTTGAAAGCCTACTAGTCAAGT 58.172 36.000 0.00 0.00 37.80 3.16
2688 4701 6.929606 TCTTTTGAAAGCCTACTAGTCAAGTC 59.070 38.462 0.00 0.00 36.49 3.01
2689 4702 6.420913 TTTGAAAGCCTACTAGTCAAGTCT 57.579 37.500 0.00 0.00 39.80 3.24
2690 4703 6.420913 TTGAAAGCCTACTAGTCAAGTCTT 57.579 37.500 0.00 0.00 39.80 3.01
2691 4704 7.534723 TTGAAAGCCTACTAGTCAAGTCTTA 57.465 36.000 0.00 0.00 39.80 2.10
2692 4705 7.534723 TGAAAGCCTACTAGTCAAGTCTTAA 57.465 36.000 0.00 0.00 39.80 1.85
2693 4706 7.376615 TGAAAGCCTACTAGTCAAGTCTTAAC 58.623 38.462 0.00 0.00 39.80 2.01
2694 4707 7.232941 TGAAAGCCTACTAGTCAAGTCTTAACT 59.767 37.037 0.00 0.00 39.80 2.24
2695 4708 8.647256 AAAGCCTACTAGTCAAGTCTTAACTA 57.353 34.615 0.00 0.00 39.80 2.24
2696 4709 8.826293 AAGCCTACTAGTCAAGTCTTAACTAT 57.174 34.615 0.00 0.00 39.80 2.12
2697 4710 8.826293 AGCCTACTAGTCAAGTCTTAACTATT 57.174 34.615 0.00 0.00 39.80 1.73
2698 4711 9.917887 AGCCTACTAGTCAAGTCTTAACTATTA 57.082 33.333 0.00 0.00 39.80 0.98
2702 4715 8.826293 ACTAGTCAAGTCTTAACTATTAGGCT 57.174 34.615 0.00 0.00 33.48 4.58
2703 4716 9.257428 ACTAGTCAAGTCTTAACTATTAGGCTT 57.743 33.333 0.00 0.00 33.48 4.35
2704 4717 9.738832 CTAGTCAAGTCTTAACTATTAGGCTTC 57.261 37.037 0.00 0.00 33.48 3.86
2705 4718 8.368962 AGTCAAGTCTTAACTATTAGGCTTCT 57.631 34.615 0.00 0.00 33.48 2.85
2706 4719 9.476928 AGTCAAGTCTTAACTATTAGGCTTCTA 57.523 33.333 0.00 0.00 33.48 2.10
2733 4746 8.846943 AAAAATAATTTTGGTTGGGCTTCTAG 57.153 30.769 0.00 0.00 37.36 2.43
2734 4747 7.790782 AAATAATTTTGGTTGGGCTTCTAGA 57.209 32.000 0.00 0.00 0.00 2.43
2735 4748 7.790782 AATAATTTTGGTTGGGCTTCTAGAA 57.209 32.000 4.81 4.81 0.00 2.10
2736 4749 7.978099 ATAATTTTGGTTGGGCTTCTAGAAT 57.022 32.000 5.44 0.00 0.00 2.40
2737 4750 9.487442 AATAATTTTGGTTGGGCTTCTAGAATA 57.513 29.630 5.44 0.00 0.00 1.75
2738 4751 7.790782 AATTTTGGTTGGGCTTCTAGAATAA 57.209 32.000 5.44 0.00 0.00 1.40
2739 4752 6.834168 TTTTGGTTGGGCTTCTAGAATAAG 57.166 37.500 5.44 0.00 0.00 1.73
2740 4753 3.886123 TGGTTGGGCTTCTAGAATAAGC 58.114 45.455 5.44 5.98 46.90 3.09
2741 4754 3.523564 TGGTTGGGCTTCTAGAATAAGCT 59.476 43.478 13.28 0.00 46.81 3.74
2742 4755 3.879892 GGTTGGGCTTCTAGAATAAGCTG 59.120 47.826 13.28 0.00 46.81 4.24
2743 4756 4.518249 GTTGGGCTTCTAGAATAAGCTGT 58.482 43.478 13.28 0.00 46.81 4.40
2744 4757 4.142609 TGGGCTTCTAGAATAAGCTGTG 57.857 45.455 13.28 0.00 46.81 3.66
2745 4758 3.519510 TGGGCTTCTAGAATAAGCTGTGT 59.480 43.478 13.28 0.00 46.81 3.72
2746 4759 4.714802 TGGGCTTCTAGAATAAGCTGTGTA 59.285 41.667 13.28 0.00 46.81 2.90
2747 4760 5.163405 TGGGCTTCTAGAATAAGCTGTGTAG 60.163 44.000 13.28 0.00 46.81 2.74
2748 4761 5.293560 GGCTTCTAGAATAAGCTGTGTAGG 58.706 45.833 13.28 0.00 46.81 3.18
2749 4762 5.293560 GCTTCTAGAATAAGCTGTGTAGGG 58.706 45.833 5.44 0.00 44.75 3.53
2750 4763 5.740513 GCTTCTAGAATAAGCTGTGTAGGGG 60.741 48.000 5.44 0.00 44.75 4.79
2751 4764 4.880164 TCTAGAATAAGCTGTGTAGGGGT 58.120 43.478 0.00 0.00 0.00 4.95
2752 4765 6.022107 TCTAGAATAAGCTGTGTAGGGGTA 57.978 41.667 0.00 0.00 0.00 3.69
2753 4766 6.069331 TCTAGAATAAGCTGTGTAGGGGTAG 58.931 44.000 0.00 0.00 0.00 3.18
2754 4767 3.388350 AGAATAAGCTGTGTAGGGGTAGC 59.612 47.826 0.00 0.00 0.00 3.58
2755 4768 2.544844 TAAGCTGTGTAGGGGTAGCT 57.455 50.000 0.00 0.00 0.00 3.32
2756 4769 1.657804 AAGCTGTGTAGGGGTAGCTT 58.342 50.000 4.64 4.64 37.72 3.74
2757 4770 2.544844 AGCTGTGTAGGGGTAGCTTA 57.455 50.000 0.00 0.00 0.00 3.09
2758 4771 3.047695 AGCTGTGTAGGGGTAGCTTAT 57.952 47.619 0.00 0.00 0.00 1.73
2759 4772 3.385115 AGCTGTGTAGGGGTAGCTTATT 58.615 45.455 0.00 0.00 0.00 1.40
2760 4773 3.780850 AGCTGTGTAGGGGTAGCTTATTT 59.219 43.478 0.00 0.00 0.00 1.40
2761 4774 4.127907 GCTGTGTAGGGGTAGCTTATTTC 58.872 47.826 0.00 0.00 0.00 2.17
2762 4775 4.383770 GCTGTGTAGGGGTAGCTTATTTCA 60.384 45.833 0.00 0.00 0.00 2.69
2763 4776 5.353394 TGTGTAGGGGTAGCTTATTTCAG 57.647 43.478 0.00 0.00 0.00 3.02
2764 4777 4.127907 GTGTAGGGGTAGCTTATTTCAGC 58.872 47.826 0.00 0.00 40.44 4.26
2788 4801 8.202745 GCTTATTCTAGAAGCTAGCAAAAGAA 57.797 34.615 18.83 18.42 44.83 2.52
2791 4804 7.608308 ATTCTAGAAGCTAGCAAAAGAACTG 57.392 36.000 18.83 0.00 0.00 3.16
2792 4805 5.482908 TCTAGAAGCTAGCAAAAGAACTGG 58.517 41.667 18.83 7.06 0.00 4.00
2793 4806 2.816672 AGAAGCTAGCAAAAGAACTGGC 59.183 45.455 18.83 0.00 40.38 4.85
2794 4807 1.539157 AGCTAGCAAAAGAACTGGCC 58.461 50.000 18.83 0.00 40.92 5.36
2795 4808 0.528017 GCTAGCAAAAGAACTGGCCC 59.472 55.000 10.63 0.00 34.61 5.80
2796 4809 1.888391 GCTAGCAAAAGAACTGGCCCT 60.888 52.381 10.63 0.00 34.61 5.19
2804 4817 2.045926 AACTGGCCCTAAGCGCAG 60.046 61.111 11.47 0.00 45.17 5.18
2839 4974 9.794685 CACTTACCTGTACATGCTCTATATATG 57.205 37.037 0.00 0.00 0.00 1.78
2844 4979 6.318900 CCTGTACATGCTCTATATATGACCGA 59.681 42.308 0.00 0.00 0.00 4.69
2904 5039 3.305177 GACGAAGCTTACCGCCCCA 62.305 63.158 0.00 0.00 40.39 4.96
2954 5092 3.463048 AGAAGAAGGGCAAACATCCAT 57.537 42.857 0.00 0.00 0.00 3.41
3219 5367 3.494626 CGTATTAATTGCTCTGCCACGAT 59.505 43.478 0.00 0.00 0.00 3.73
3246 5394 5.534654 AGAGATAGTTTCAGAGAATCCTCCG 59.465 44.000 0.00 0.00 40.30 4.63
3450 5598 0.114954 ATGGTGGTTCAACATGGCCT 59.885 50.000 3.32 0.00 40.58 5.19
3487 5635 4.041723 GCACAGCAAAACGAAACTACAAT 58.958 39.130 0.00 0.00 0.00 2.71
3495 5643 7.431084 AGCAAAACGAAACTACAATACAAACAG 59.569 33.333 0.00 0.00 0.00 3.16
3527 5741 4.797349 GCAAAGATATGCAACAGCTTCTTC 59.203 41.667 3.04 0.00 45.70 2.87
3544 6551 7.867909 CAGCTTCTTCGATATATTACCACTTCA 59.132 37.037 0.00 0.00 0.00 3.02
3558 6565 4.307259 ACCACTTCACATATATCCCCAGT 58.693 43.478 0.00 0.00 0.00 4.00
3690 6697 3.100671 GCAGGAGGGTATACTAGGATGG 58.899 54.545 0.00 0.00 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 1.530655 AACCGGGCCTTGAAAGTGG 60.531 57.895 6.32 0.00 0.00 4.00
133 134 6.169094 CAGCTAATCTTGAAGGACAAAGAGA 58.831 40.000 0.00 0.00 38.08 3.10
136 137 4.456911 TGCAGCTAATCTTGAAGGACAAAG 59.543 41.667 0.00 0.00 38.08 2.77
191 192 1.830587 TTCAGATCAGTGCAGCCCGT 61.831 55.000 0.00 0.00 0.00 5.28
299 309 9.495754 GAGAGAGAACCGAATTTATTTTGATTG 57.504 33.333 0.00 0.00 0.00 2.67
308 318 6.419791 AGAGAGAGAGAGAGAACCGAATTTA 58.580 40.000 0.00 0.00 0.00 1.40
309 319 5.261216 AGAGAGAGAGAGAGAACCGAATTT 58.739 41.667 0.00 0.00 0.00 1.82
312 322 3.517901 AGAGAGAGAGAGAGAGAACCGAA 59.482 47.826 0.00 0.00 0.00 4.30
314 324 3.458189 GAGAGAGAGAGAGAGAGAACCG 58.542 54.545 0.00 0.00 0.00 4.44
315 325 3.456277 AGGAGAGAGAGAGAGAGAGAACC 59.544 52.174 0.00 0.00 0.00 3.62
354 457 3.628032 TGCATGAACACGTACCAAAGAAA 59.372 39.130 0.00 0.00 0.00 2.52
355 458 3.206964 TGCATGAACACGTACCAAAGAA 58.793 40.909 0.00 0.00 0.00 2.52
357 460 3.491356 CATGCATGAACACGTACCAAAG 58.509 45.455 22.59 0.00 0.00 2.77
359 462 1.198867 GCATGCATGAACACGTACCAA 59.801 47.619 30.64 0.00 0.00 3.67
360 463 0.801872 GCATGCATGAACACGTACCA 59.198 50.000 30.64 0.00 0.00 3.25
361 464 0.801872 TGCATGCATGAACACGTACC 59.198 50.000 30.64 9.40 0.00 3.34
362 465 1.791555 GCTGCATGCATGAACACGTAC 60.792 52.381 30.64 10.13 42.31 3.67
363 466 0.447406 GCTGCATGCATGAACACGTA 59.553 50.000 30.64 0.11 42.31 3.57
364 467 1.210931 GCTGCATGCATGAACACGT 59.789 52.632 30.64 0.00 42.31 4.49
365 468 0.522705 GAGCTGCATGCATGAACACG 60.523 55.000 30.64 9.50 45.94 4.49
366 469 0.524414 TGAGCTGCATGCATGAACAC 59.476 50.000 30.64 15.90 45.94 3.32
367 470 0.808755 CTGAGCTGCATGCATGAACA 59.191 50.000 30.64 17.73 45.94 3.18
368 471 0.525668 GCTGAGCTGCATGCATGAAC 60.526 55.000 30.64 17.18 45.94 3.18
385 488 6.857326 CTCAAACAGAGTAGCACGTCAGCT 62.857 50.000 5.65 5.65 41.00 4.24
444 547 7.618019 AATTGGAAGGCTCACTATACATAGA 57.382 36.000 3.27 0.00 34.50 1.98
488 591 4.713553 TGCACCTCAAGTACATCAAAAGA 58.286 39.130 0.00 0.00 0.00 2.52
606 1223 3.136763 AGATTGAGCTCCGCATGTTATG 58.863 45.455 12.15 0.00 0.00 1.90
629 1246 6.121776 AGTATGATGTCCACACTTGGTTTA 57.878 37.500 0.00 0.00 44.35 2.01
634 1259 7.615582 AAATGTAGTATGATGTCCACACTTG 57.384 36.000 0.00 0.00 0.00 3.16
676 1657 5.596836 TGAAACCACAAAAGCTCAATCTT 57.403 34.783 0.00 0.00 0.00 2.40
701 1682 9.132521 CACCACATCTTCAAAATAGTGAAAATC 57.867 33.333 0.00 0.00 37.08 2.17
788 1769 8.715088 GCAGAAACATTCTTTGCATTTCTATTT 58.285 29.630 8.47 0.00 37.48 1.40
789 1770 7.874016 TGCAGAAACATTCTTTGCATTTCTATT 59.126 29.630 8.47 0.00 37.48 1.73
790 1771 7.380536 TGCAGAAACATTCTTTGCATTTCTAT 58.619 30.769 8.47 0.00 37.48 1.98
791 1772 6.747125 TGCAGAAACATTCTTTGCATTTCTA 58.253 32.000 8.47 0.00 37.48 2.10
792 1773 5.603596 TGCAGAAACATTCTTTGCATTTCT 58.396 33.333 3.87 3.87 39.58 2.52
793 1774 5.910637 TGCAGAAACATTCTTTGCATTTC 57.089 34.783 3.71 0.00 38.11 2.17
794 1775 9.826574 ATATATGCAGAAACATTCTTTGCATTT 57.173 25.926 18.71 15.02 43.02 2.32
795 1776 9.826574 AATATATGCAGAAACATTCTTTGCATT 57.173 25.926 18.71 12.16 43.02 3.56
796 1777 9.826574 AAATATATGCAGAAACATTCTTTGCAT 57.173 25.926 18.01 18.01 45.61 3.96
824 1805 8.543774 GGATAGATAGCCTAAATCATCTTCCAA 58.456 37.037 0.00 0.00 31.77 3.53
825 1806 7.903481 AGGATAGATAGCCTAAATCATCTTCCA 59.097 37.037 0.00 0.00 40.98 3.53
826 1807 8.317776 AGGATAGATAGCCTAAATCATCTTCC 57.682 38.462 0.00 0.00 40.98 3.46
827 1808 8.976353 TGAGGATAGATAGCCTAAATCATCTTC 58.024 37.037 0.00 0.00 43.22 2.87
828 1809 8.907829 TGAGGATAGATAGCCTAAATCATCTT 57.092 34.615 0.00 0.00 43.22 2.40
829 1810 9.146586 GATGAGGATAGATAGCCTAAATCATCT 57.853 37.037 13.02 0.00 43.22 2.90
830 1811 9.146586 AGATGAGGATAGATAGCCTAAATCATC 57.853 37.037 16.02 14.38 43.22 2.92
831 1812 8.926374 CAGATGAGGATAGATAGCCTAAATCAT 58.074 37.037 16.02 8.41 43.22 2.45
832 1813 8.118600 TCAGATGAGGATAGATAGCCTAAATCA 58.881 37.037 16.02 4.84 43.22 2.57
834 1815 8.926374 CATCAGATGAGGATAGATAGCCTAAAT 58.074 37.037 4.11 0.00 43.22 1.40
835 1816 8.118600 TCATCAGATGAGGATAGATAGCCTAAA 58.881 37.037 9.21 0.00 43.22 1.85
836 1817 7.646884 TCATCAGATGAGGATAGATAGCCTAA 58.353 38.462 9.21 0.00 43.22 2.69
837 1818 7.218314 TCATCAGATGAGGATAGATAGCCTA 57.782 40.000 9.21 0.00 43.22 3.93
838 1819 6.089808 TCATCAGATGAGGATAGATAGCCT 57.910 41.667 9.21 0.00 46.43 4.58
851 1832 5.810080 AAGATCTCATGCTCATCAGATGA 57.190 39.130 12.74 12.74 37.76 2.92
853 1834 6.176014 TCAAAGATCTCATGCTCATCAGAT 57.824 37.500 0.00 0.00 0.00 2.90
854 1835 5.609533 TCAAAGATCTCATGCTCATCAGA 57.390 39.130 0.00 0.00 0.00 3.27
855 1836 6.483640 TCAATCAAAGATCTCATGCTCATCAG 59.516 38.462 0.00 0.00 0.00 2.90
856 1837 6.354130 TCAATCAAAGATCTCATGCTCATCA 58.646 36.000 0.00 0.00 0.00 3.07
858 1839 6.829298 AGTTCAATCAAAGATCTCATGCTCAT 59.171 34.615 0.00 0.00 0.00 2.90
859 1840 6.178324 AGTTCAATCAAAGATCTCATGCTCA 58.822 36.000 0.00 0.00 0.00 4.26
861 1842 6.257411 CGTAGTTCAATCAAAGATCTCATGCT 59.743 38.462 0.00 0.00 0.00 3.79
862 1843 6.417327 CGTAGTTCAATCAAAGATCTCATGC 58.583 40.000 0.00 0.00 0.00 4.06
863 1844 6.417327 GCGTAGTTCAATCAAAGATCTCATG 58.583 40.000 0.00 0.00 0.00 3.07
864 1845 5.233050 CGCGTAGTTCAATCAAAGATCTCAT 59.767 40.000 0.00 0.00 0.00 2.90
865 1846 4.562789 CGCGTAGTTCAATCAAAGATCTCA 59.437 41.667 0.00 0.00 0.00 3.27
866 1847 4.026475 CCGCGTAGTTCAATCAAAGATCTC 60.026 45.833 4.92 0.00 0.00 2.75
867 1848 3.865745 CCGCGTAGTTCAATCAAAGATCT 59.134 43.478 4.92 0.00 0.00 2.75
868 1849 3.863424 TCCGCGTAGTTCAATCAAAGATC 59.137 43.478 4.92 0.00 0.00 2.75
869 1850 3.617263 GTCCGCGTAGTTCAATCAAAGAT 59.383 43.478 4.92 0.00 0.00 2.40
870 1851 2.991190 GTCCGCGTAGTTCAATCAAAGA 59.009 45.455 4.92 0.00 0.00 2.52
871 1852 2.734606 TGTCCGCGTAGTTCAATCAAAG 59.265 45.455 4.92 0.00 0.00 2.77
872 1853 2.756829 TGTCCGCGTAGTTCAATCAAA 58.243 42.857 4.92 0.00 0.00 2.69
873 1854 2.442212 TGTCCGCGTAGTTCAATCAA 57.558 45.000 4.92 0.00 0.00 2.57
874 1855 2.665649 ATGTCCGCGTAGTTCAATCA 57.334 45.000 4.92 0.00 0.00 2.57
875 1856 6.946229 AATATATGTCCGCGTAGTTCAATC 57.054 37.500 4.92 0.00 0.00 2.67
876 1857 6.525628 CGTAATATATGTCCGCGTAGTTCAAT 59.474 38.462 4.92 0.00 0.00 2.57
877 1858 5.852755 CGTAATATATGTCCGCGTAGTTCAA 59.147 40.000 4.92 0.00 0.00 2.69
878 1859 5.384787 CGTAATATATGTCCGCGTAGTTCA 58.615 41.667 4.92 0.00 0.00 3.18
879 1860 4.790140 CCGTAATATATGTCCGCGTAGTTC 59.210 45.833 4.92 0.00 0.00 3.01
880 1861 4.455533 TCCGTAATATATGTCCGCGTAGTT 59.544 41.667 4.92 0.00 0.00 2.24
881 1862 4.002982 TCCGTAATATATGTCCGCGTAGT 58.997 43.478 4.92 0.00 0.00 2.73
882 1863 4.604843 TCCGTAATATATGTCCGCGTAG 57.395 45.455 4.92 0.00 0.00 3.51
883 1864 5.237127 CCTATCCGTAATATATGTCCGCGTA 59.763 44.000 4.92 0.00 0.00 4.42
884 1865 4.036027 CCTATCCGTAATATATGTCCGCGT 59.964 45.833 4.92 0.00 0.00 6.01
885 1866 4.036027 ACCTATCCGTAATATATGTCCGCG 59.964 45.833 0.00 0.00 0.00 6.46
886 1867 5.511234 ACCTATCCGTAATATATGTCCGC 57.489 43.478 0.00 0.00 0.00 5.54
887 1868 6.127535 ACCAACCTATCCGTAATATATGTCCG 60.128 42.308 0.00 0.00 0.00 4.79
888 1869 7.039882 CACCAACCTATCCGTAATATATGTCC 58.960 42.308 0.00 0.00 0.00 4.02
889 1870 6.534079 GCACCAACCTATCCGTAATATATGTC 59.466 42.308 0.00 0.00 0.00 3.06
890 1871 6.212791 AGCACCAACCTATCCGTAATATATGT 59.787 38.462 0.00 0.00 0.00 2.29
891 1872 6.640518 AGCACCAACCTATCCGTAATATATG 58.359 40.000 0.00 0.00 0.00 1.78
892 1873 6.668283 AGAGCACCAACCTATCCGTAATATAT 59.332 38.462 0.00 0.00 0.00 0.86
893 1874 6.014647 AGAGCACCAACCTATCCGTAATATA 58.985 40.000 0.00 0.00 0.00 0.86
894 1875 4.838986 AGAGCACCAACCTATCCGTAATAT 59.161 41.667 0.00 0.00 0.00 1.28
895 1876 4.220724 AGAGCACCAACCTATCCGTAATA 58.779 43.478 0.00 0.00 0.00 0.98
896 1877 3.039011 AGAGCACCAACCTATCCGTAAT 58.961 45.455 0.00 0.00 0.00 1.89
897 1878 2.463752 AGAGCACCAACCTATCCGTAA 58.536 47.619 0.00 0.00 0.00 3.18
898 1879 2.154567 AGAGCACCAACCTATCCGTA 57.845 50.000 0.00 0.00 0.00 4.02
899 1880 1.276622 AAGAGCACCAACCTATCCGT 58.723 50.000 0.00 0.00 0.00 4.69
900 1881 2.403252 AAAGAGCACCAACCTATCCG 57.597 50.000 0.00 0.00 0.00 4.18
901 1882 4.336280 AGAAAAAGAGCACCAACCTATCC 58.664 43.478 0.00 0.00 0.00 2.59
902 1883 5.123027 CAGAGAAAAAGAGCACCAACCTATC 59.877 44.000 0.00 0.00 0.00 2.08
903 1884 5.006386 CAGAGAAAAAGAGCACCAACCTAT 58.994 41.667 0.00 0.00 0.00 2.57
905 1886 3.217626 CAGAGAAAAAGAGCACCAACCT 58.782 45.455 0.00 0.00 0.00 3.50
907 1888 2.358898 TGCAGAGAAAAAGAGCACCAAC 59.641 45.455 0.00 0.00 0.00 3.77
910 1891 3.930634 AATGCAGAGAAAAAGAGCACC 57.069 42.857 0.00 0.00 38.12 5.01
952 1933 7.561021 TGTGTCTGTCAGCTTAATACAAAAA 57.439 32.000 0.00 0.00 0.00 1.94
953 1934 7.189693 CTGTGTCTGTCAGCTTAATACAAAA 57.810 36.000 0.00 0.00 0.00 2.44
954 1935 6.785488 CTGTGTCTGTCAGCTTAATACAAA 57.215 37.500 0.00 0.00 0.00 2.83
977 1958 3.872182 GCCCTAAAGTAGCTTAACAGAGC 59.128 47.826 0.00 0.00 43.02 4.09
978 1959 5.086104 TGCCCTAAAGTAGCTTAACAGAG 57.914 43.478 0.00 0.00 0.00 3.35
979 1960 5.188948 TCATGCCCTAAAGTAGCTTAACAGA 59.811 40.000 0.00 0.00 0.00 3.41
980 1961 5.294552 GTCATGCCCTAAAGTAGCTTAACAG 59.705 44.000 0.00 0.00 0.00 3.16
981 1962 5.045869 AGTCATGCCCTAAAGTAGCTTAACA 60.046 40.000 0.00 0.00 0.00 2.41
982 1963 5.294552 CAGTCATGCCCTAAAGTAGCTTAAC 59.705 44.000 0.00 0.00 0.00 2.01
983 1964 5.045869 ACAGTCATGCCCTAAAGTAGCTTAA 60.046 40.000 0.00 0.00 0.00 1.85
984 1965 4.469945 ACAGTCATGCCCTAAAGTAGCTTA 59.530 41.667 0.00 0.00 0.00 3.09
985 1966 3.264450 ACAGTCATGCCCTAAAGTAGCTT 59.736 43.478 0.00 0.00 0.00 3.74
986 1967 2.840651 ACAGTCATGCCCTAAAGTAGCT 59.159 45.455 0.00 0.00 0.00 3.32
987 1968 2.939103 CACAGTCATGCCCTAAAGTAGC 59.061 50.000 0.00 0.00 0.00 3.58
989 1970 2.676750 CGCACAGTCATGCCCTAAAGTA 60.677 50.000 0.00 0.00 42.99 2.24
990 1971 1.826385 GCACAGTCATGCCCTAAAGT 58.174 50.000 0.00 0.00 39.86 2.66
993 1974 0.673333 CACGCACAGTCATGCCCTAA 60.673 55.000 0.00 0.00 42.99 2.69
995 1976 2.359107 CACGCACAGTCATGCCCT 60.359 61.111 0.00 0.00 42.99 5.19
996 1977 3.434319 CCACGCACAGTCATGCCC 61.434 66.667 0.00 0.00 42.99 5.36
997 1978 2.669569 ACCACGCACAGTCATGCC 60.670 61.111 0.00 0.00 42.99 4.40
998 1979 1.904852 CTGACCACGCACAGTCATGC 61.905 60.000 0.69 0.00 41.90 4.06
999 1980 0.601046 ACTGACCACGCACAGTCATG 60.601 55.000 0.00 0.00 42.61 3.07
1000 1981 0.106708 AACTGACCACGCACAGTCAT 59.893 50.000 0.00 0.00 44.94 3.06
1002 1983 1.934463 CAACTGACCACGCACAGTC 59.066 57.895 0.00 0.00 44.94 3.51
1173 2415 4.770531 TCTCCACTAAGAAACTGATCCGAA 59.229 41.667 0.00 0.00 0.00 4.30
1210 2452 3.349927 TCCCTAACGAAATCTCTCGACA 58.650 45.455 0.00 0.00 41.44 4.35
1238 2480 4.584325 ACTTACCAACAGTGCAATCAACAT 59.416 37.500 0.00 0.00 0.00 2.71
1297 2541 5.147162 CAGGAAGAAACGCATAGAAACAAC 58.853 41.667 0.00 0.00 0.00 3.32
1306 2550 0.607489 AGCAGCAGGAAGAAACGCAT 60.607 50.000 0.00 0.00 0.00 4.73
1324 2568 9.346725 GAAAGAAGTTAGCCACAATATTCAAAG 57.653 33.333 0.00 0.00 0.00 2.77
1385 2636 1.101049 ACACAAGGCCCTCAAACGTG 61.101 55.000 0.00 0.00 0.00 4.49
1386 2637 0.818040 GACACAAGGCCCTCAAACGT 60.818 55.000 0.00 0.00 0.00 3.99
1394 2648 0.391793 GAGCAGTAGACACAAGGCCC 60.392 60.000 0.00 0.00 0.00 5.80
1509 2776 6.605471 ATGACATGTACAACCAGTAGAAGA 57.395 37.500 0.00 0.00 32.19 2.87
1510 2777 6.402550 GCAATGACATGTACAACCAGTAGAAG 60.403 42.308 0.00 0.00 32.19 2.85
1526 2793 0.682209 GACTGGGCCAGCAATGACAT 60.682 55.000 33.04 11.34 34.37 3.06
1532 2799 2.046023 CATCGACTGGGCCAGCAA 60.046 61.111 33.04 18.70 34.37 3.91
1547 2814 1.070758 ACGCTGGTGTCTTCTGAACAT 59.929 47.619 0.00 0.00 0.00 2.71
1572 2839 4.697756 CGTGTCATGCGGTGGGGT 62.698 66.667 0.00 0.00 0.00 4.95
1614 2881 1.663643 TCGAGTAATTGTTGATGCGCC 59.336 47.619 4.18 0.00 0.00 6.53
1622 2889 5.677091 GCATGCTTCCATTCGAGTAATTGTT 60.677 40.000 11.37 0.00 0.00 2.83
1626 2893 3.544684 TGCATGCTTCCATTCGAGTAAT 58.455 40.909 20.33 0.00 0.00 1.89
1627 2894 2.938451 CTGCATGCTTCCATTCGAGTAA 59.062 45.455 20.33 0.00 0.00 2.24
1706 2973 2.070783 GCCTCGGTGTATTTTCGTTGA 58.929 47.619 0.00 0.00 0.00 3.18
1737 3004 2.165167 ACTTCCGTTCGAGTCCATGTA 58.835 47.619 0.00 0.00 0.00 2.29
1743 3010 1.599992 CGTGTACTTCCGTTCGAGTC 58.400 55.000 0.00 0.00 0.00 3.36
1776 3043 1.131218 CTGTTCGAGTGCATGCGTG 59.869 57.895 14.09 0.09 0.00 5.34
1793 3060 1.611673 GCACTGCATGGGTGTACTTCT 60.612 52.381 6.46 0.00 37.07 2.85
1794 3061 0.804989 GCACTGCATGGGTGTACTTC 59.195 55.000 6.46 0.00 37.07 3.01
1797 3064 1.875963 GTGCACTGCATGGGTGTAC 59.124 57.895 10.32 9.41 41.91 2.90
1798 3065 1.670730 CGTGCACTGCATGGGTGTA 60.671 57.895 16.19 0.00 41.91 2.90
1799 3066 2.979676 CGTGCACTGCATGGGTGT 60.980 61.111 16.19 0.00 41.91 4.16
1800 3067 4.409218 GCGTGCACTGCATGGGTG 62.409 66.667 22.05 0.83 44.72 4.61
1801 3068 4.953010 TGCGTGCACTGCATGGGT 62.953 61.111 25.28 0.00 44.72 4.51
1813 3083 2.334971 TTCATTGAACTGCATGCGTG 57.665 45.000 14.09 11.03 0.00 5.34
1818 3088 6.046593 CAGGCATATTTTCATTGAACTGCAT 58.953 36.000 17.25 11.44 0.00 3.96
1823 3093 4.500477 GCGTCAGGCATATTTTCATTGAAC 59.500 41.667 0.00 0.00 42.87 3.18
1825 3095 4.291540 GCGTCAGGCATATTTTCATTGA 57.708 40.909 0.00 0.00 42.87 2.57
1851 3121 3.189285 ACTTTTATTGGATTGCATGCGC 58.811 40.909 14.09 0.00 39.24 6.09
1852 3122 4.437495 CGTACTTTTATTGGATTGCATGCG 59.563 41.667 14.09 0.00 0.00 4.73
1855 3125 4.497340 CGGCGTACTTTTATTGGATTGCAT 60.497 41.667 0.00 0.00 0.00 3.96
1865 3135 3.235157 TGCACTACGGCGTACTTTTAT 57.765 42.857 16.97 0.00 36.28 1.40
1867 3137 1.730064 CATGCACTACGGCGTACTTTT 59.270 47.619 16.97 0.00 36.28 2.27
1871 3141 1.151777 ATGCATGCACTACGGCGTAC 61.152 55.000 25.37 7.45 36.28 3.67
1886 3163 4.804665 CGTATTTTCATTGGATTGCATGCA 59.195 37.500 18.46 18.46 0.00 3.96
1958 3296 1.936547 GCTAGCATTACTGGAGTGCAC 59.063 52.381 9.40 9.40 41.19 4.57
1980 3326 6.091305 GTCAACTCCGTAATAACCCTGTAAAC 59.909 42.308 0.00 0.00 0.00 2.01
1986 3332 2.502947 GGGTCAACTCCGTAATAACCCT 59.497 50.000 0.00 0.00 41.37 4.34
2005 3351 2.428171 CAACCATAATCTGCCAACTGGG 59.572 50.000 0.00 0.00 40.85 4.45
2043 3390 3.289836 CAATCAAGGATATGTGTGGCCA 58.710 45.455 0.00 0.00 0.00 5.36
2109 3456 1.065926 GCACATCAGATGGACCAGACA 60.066 52.381 15.13 0.00 33.60 3.41
2120 3467 5.008514 TCGAAAAACAAATGAGCACATCAGA 59.991 36.000 0.00 0.00 42.53 3.27
2251 4262 1.077858 GGCAGGAAGAGCAGAAGGG 60.078 63.158 0.00 0.00 0.00 3.95
2279 4290 4.822896 AGCACCAACTAAATAACGGTCAAA 59.177 37.500 0.00 0.00 0.00 2.69
2599 4612 4.535526 GCTTATTCTGGAAGCCCAAAAA 57.464 40.909 0.00 0.00 42.90 1.94
2607 4620 2.172293 AGAGGGCAGCTTATTCTGGAAG 59.828 50.000 0.00 0.00 34.74 3.46
2608 4621 2.200081 AGAGGGCAGCTTATTCTGGAA 58.800 47.619 0.00 0.00 34.74 3.53
2609 4622 1.885049 AGAGGGCAGCTTATTCTGGA 58.115 50.000 0.00 0.00 34.74 3.86
2610 4623 2.224402 GGTAGAGGGCAGCTTATTCTGG 60.224 54.545 0.00 0.00 34.74 3.86
2611 4624 2.224402 GGGTAGAGGGCAGCTTATTCTG 60.224 54.545 0.00 0.00 37.15 3.02
2612 4625 2.050918 GGGTAGAGGGCAGCTTATTCT 58.949 52.381 0.00 0.00 0.00 2.40
2613 4626 1.768870 TGGGTAGAGGGCAGCTTATTC 59.231 52.381 0.00 0.00 0.00 1.75
2614 4627 1.771255 CTGGGTAGAGGGCAGCTTATT 59.229 52.381 0.00 0.00 0.00 1.40
2615 4628 1.428869 CTGGGTAGAGGGCAGCTTAT 58.571 55.000 0.00 0.00 0.00 1.73
2616 4629 1.338136 GCTGGGTAGAGGGCAGCTTA 61.338 60.000 0.00 0.00 36.12 3.09
2617 4630 2.674220 GCTGGGTAGAGGGCAGCTT 61.674 63.158 0.00 0.00 36.12 3.74
2618 4631 3.086600 GCTGGGTAGAGGGCAGCT 61.087 66.667 0.00 0.00 36.12 4.24
2619 4632 1.338136 TAAGCTGGGTAGAGGGCAGC 61.338 60.000 0.00 0.00 39.01 5.25
2620 4633 1.428869 ATAAGCTGGGTAGAGGGCAG 58.571 55.000 0.00 0.00 0.00 4.85
2621 4634 1.768870 GAATAAGCTGGGTAGAGGGCA 59.231 52.381 0.00 0.00 0.00 5.36
2622 4635 2.050918 AGAATAAGCTGGGTAGAGGGC 58.949 52.381 0.00 0.00 0.00 5.19
2623 4636 4.742012 TCTAGAATAAGCTGGGTAGAGGG 58.258 47.826 0.00 0.00 0.00 4.30
2624 4637 5.279256 GCTTCTAGAATAAGCTGGGTAGAGG 60.279 48.000 5.44 0.00 44.75 3.69
2625 4638 5.279256 GGCTTCTAGAATAAGCTGGGTAGAG 60.279 48.000 13.28 0.00 46.81 2.43
2626 4639 4.589374 GGCTTCTAGAATAAGCTGGGTAGA 59.411 45.833 13.28 0.00 46.81 2.59
2627 4640 4.345257 TGGCTTCTAGAATAAGCTGGGTAG 59.655 45.833 13.28 0.00 46.81 3.18
2628 4641 4.295201 TGGCTTCTAGAATAAGCTGGGTA 58.705 43.478 13.28 0.00 46.81 3.69
2629 4642 3.115390 TGGCTTCTAGAATAAGCTGGGT 58.885 45.455 13.28 0.00 46.81 4.51
2630 4643 3.845781 TGGCTTCTAGAATAAGCTGGG 57.154 47.619 13.28 0.00 46.81 4.45
2631 4644 5.824624 TGATTTGGCTTCTAGAATAAGCTGG 59.175 40.000 13.28 0.00 46.81 4.85
2632 4645 6.932356 TGATTTGGCTTCTAGAATAAGCTG 57.068 37.500 13.28 0.00 46.81 4.24
2633 4646 8.530804 AATTGATTTGGCTTCTAGAATAAGCT 57.469 30.769 13.28 0.00 46.81 3.74
2634 4647 9.591792 AAAATTGATTTGGCTTCTAGAATAAGC 57.408 29.630 5.44 5.98 46.90 3.09
2659 4672 8.514330 TGACTAGTAGGCTTTCAAAAGAAAAA 57.486 30.769 4.24 0.00 38.28 1.94
2660 4673 8.514330 TTGACTAGTAGGCTTTCAAAAGAAAA 57.486 30.769 4.24 0.00 38.28 2.29
2661 4674 7.773690 ACTTGACTAGTAGGCTTTCAAAAGAAA 59.226 33.333 4.24 0.00 35.07 2.52
2662 4675 7.280356 ACTTGACTAGTAGGCTTTCAAAAGAA 58.720 34.615 4.24 0.00 35.07 2.52
2663 4676 6.827727 ACTTGACTAGTAGGCTTTCAAAAGA 58.172 36.000 4.24 0.00 35.07 2.52
2664 4677 6.931840 AGACTTGACTAGTAGGCTTTCAAAAG 59.068 38.462 4.24 0.90 37.17 2.27
2665 4678 6.827727 AGACTTGACTAGTAGGCTTTCAAAA 58.172 36.000 4.24 0.00 37.17 2.44
2666 4679 6.420913 AGACTTGACTAGTAGGCTTTCAAA 57.579 37.500 4.24 0.00 37.17 2.69
2667 4680 6.420913 AAGACTTGACTAGTAGGCTTTCAA 57.579 37.500 7.81 2.96 36.31 2.69
2668 4681 7.232941 AGTTAAGACTTGACTAGTAGGCTTTCA 59.767 37.037 17.10 4.43 40.21 2.69
2669 4682 7.604549 AGTTAAGACTTGACTAGTAGGCTTTC 58.395 38.462 17.10 11.58 40.21 2.62
2670 4683 7.541916 AGTTAAGACTTGACTAGTAGGCTTT 57.458 36.000 17.10 0.00 40.21 3.51
2671 4684 8.826293 ATAGTTAAGACTTGACTAGTAGGCTT 57.174 34.615 20.58 16.31 42.30 4.35
2672 4685 8.826293 AATAGTTAAGACTTGACTAGTAGGCT 57.174 34.615 20.58 0.00 37.17 4.58
2676 4689 9.917887 AGCCTAATAGTTAAGACTTGACTAGTA 57.082 33.333 20.58 20.18 37.17 1.82
2677 4690 8.826293 AGCCTAATAGTTAAGACTTGACTAGT 57.174 34.615 20.58 20.15 40.71 2.57
2678 4691 9.738832 GAAGCCTAATAGTTAAGACTTGACTAG 57.261 37.037 20.58 11.79 35.56 2.57
2679 4692 9.476928 AGAAGCCTAATAGTTAAGACTTGACTA 57.523 33.333 18.90 18.90 36.38 2.59
2680 4693 8.368962 AGAAGCCTAATAGTTAAGACTTGACT 57.631 34.615 16.02 16.02 37.33 3.41
2708 4721 8.655901 TCTAGAAGCCCAACCAAAATTATTTTT 58.344 29.630 0.00 0.00 35.41 1.94
2709 4722 8.201242 TCTAGAAGCCCAACCAAAATTATTTT 57.799 30.769 0.00 0.00 0.00 1.82
2710 4723 7.790782 TCTAGAAGCCCAACCAAAATTATTT 57.209 32.000 0.00 0.00 0.00 1.40
2711 4724 7.790782 TTCTAGAAGCCCAACCAAAATTATT 57.209 32.000 0.00 0.00 0.00 1.40
2712 4725 7.978099 ATTCTAGAAGCCCAACCAAAATTAT 57.022 32.000 11.53 0.00 0.00 1.28
2713 4726 8.887264 TTATTCTAGAAGCCCAACCAAAATTA 57.113 30.769 11.53 0.00 0.00 1.40
2714 4727 7.579531 GCTTATTCTAGAAGCCCAACCAAAATT 60.580 37.037 11.53 0.00 42.90 1.82
2715 4728 6.127338 GCTTATTCTAGAAGCCCAACCAAAAT 60.127 38.462 11.53 0.00 42.90 1.82
2716 4729 5.185056 GCTTATTCTAGAAGCCCAACCAAAA 59.815 40.000 11.53 0.00 42.90 2.44
2717 4730 4.705023 GCTTATTCTAGAAGCCCAACCAAA 59.295 41.667 11.53 0.00 42.90 3.28
2718 4731 4.270008 GCTTATTCTAGAAGCCCAACCAA 58.730 43.478 11.53 0.00 42.90 3.67
2719 4732 3.886123 GCTTATTCTAGAAGCCCAACCA 58.114 45.455 11.53 0.00 42.90 3.67
2727 4740 5.364157 ACCCCTACACAGCTTATTCTAGAAG 59.636 44.000 11.53 0.00 0.00 2.85
2728 4741 5.278061 ACCCCTACACAGCTTATTCTAGAA 58.722 41.667 7.82 7.82 0.00 2.10
2729 4742 4.880164 ACCCCTACACAGCTTATTCTAGA 58.120 43.478 0.00 0.00 0.00 2.43
2730 4743 5.279056 GCTACCCCTACACAGCTTATTCTAG 60.279 48.000 0.00 0.00 0.00 2.43
2731 4744 4.587684 GCTACCCCTACACAGCTTATTCTA 59.412 45.833 0.00 0.00 0.00 2.10
2732 4745 3.388350 GCTACCCCTACACAGCTTATTCT 59.612 47.826 0.00 0.00 0.00 2.40
2733 4746 3.388350 AGCTACCCCTACACAGCTTATTC 59.612 47.826 0.00 0.00 41.50 1.75
2734 4747 3.385115 AGCTACCCCTACACAGCTTATT 58.615 45.455 0.00 0.00 41.50 1.40
2735 4748 3.047695 AGCTACCCCTACACAGCTTAT 57.952 47.619 0.00 0.00 41.50 1.73
2736 4749 2.544844 AGCTACCCCTACACAGCTTA 57.455 50.000 0.00 0.00 41.50 3.09
2737 4750 1.657804 AAGCTACCCCTACACAGCTT 58.342 50.000 1.97 1.97 46.69 3.74
2738 4751 2.544844 TAAGCTACCCCTACACAGCT 57.455 50.000 0.00 0.00 46.05 4.24
2739 4752 3.840124 AATAAGCTACCCCTACACAGC 57.160 47.619 0.00 0.00 0.00 4.40
2740 4753 5.353394 TGAAATAAGCTACCCCTACACAG 57.647 43.478 0.00 0.00 0.00 3.66
2741 4754 4.383770 GCTGAAATAAGCTACCCCTACACA 60.384 45.833 0.00 0.00 40.20 3.72
2742 4755 4.127907 GCTGAAATAAGCTACCCCTACAC 58.872 47.826 0.00 0.00 40.20 2.90
2743 4756 4.417426 GCTGAAATAAGCTACCCCTACA 57.583 45.455 0.00 0.00 40.20 2.74
2764 4777 9.377312 AGTTCTTTTGCTAGCTTCTAGAATAAG 57.623 33.333 17.23 5.21 0.00 1.73
2765 4778 9.155975 CAGTTCTTTTGCTAGCTTCTAGAATAA 57.844 33.333 17.23 0.00 0.00 1.40
2766 4779 7.766278 CCAGTTCTTTTGCTAGCTTCTAGAATA 59.234 37.037 17.23 0.00 0.00 1.75
2767 4780 6.597280 CCAGTTCTTTTGCTAGCTTCTAGAAT 59.403 38.462 17.23 0.00 0.00 2.40
2768 4781 5.934625 CCAGTTCTTTTGCTAGCTTCTAGAA 59.065 40.000 17.23 15.23 0.00 2.10
2769 4782 5.482908 CCAGTTCTTTTGCTAGCTTCTAGA 58.517 41.667 17.23 10.32 0.00 2.43
2770 4783 4.094146 GCCAGTTCTTTTGCTAGCTTCTAG 59.906 45.833 17.23 8.16 0.00 2.43
2771 4784 4.003648 GCCAGTTCTTTTGCTAGCTTCTA 58.996 43.478 17.23 0.00 0.00 2.10
2772 4785 2.816672 GCCAGTTCTTTTGCTAGCTTCT 59.183 45.455 17.23 1.20 0.00 2.85
2774 4787 1.889170 GGCCAGTTCTTTTGCTAGCTT 59.111 47.619 17.23 0.00 0.00 3.74
2788 4801 4.785453 GCTGCGCTTAGGGCCAGT 62.785 66.667 18.37 0.00 40.86 4.00
2793 4806 4.451150 TCACCGCTGCGCTTAGGG 62.451 66.667 18.00 6.92 0.00 3.53
2794 4807 3.188786 GTCACCGCTGCGCTTAGG 61.189 66.667 18.00 11.56 0.00 2.69
2795 4808 2.125912 AGTCACCGCTGCGCTTAG 60.126 61.111 18.00 5.43 0.00 2.18
2796 4809 2.126071 GAGTCACCGCTGCGCTTA 60.126 61.111 18.00 0.00 0.00 3.09
2804 4817 0.317479 ACAGGTAAGTGAGTCACCGC 59.683 55.000 19.71 9.82 37.42 5.68
2839 4974 0.989890 GCGTGAGTGTACAATCGGTC 59.010 55.000 17.64 10.03 0.00 4.79
2844 4979 0.790207 CTTGCGCGTGAGTGTACAAT 59.210 50.000 8.43 0.00 45.15 2.71
2904 5039 3.838244 TTGCTACGGAGGATGCTATTT 57.162 42.857 0.00 0.00 0.00 1.40
2954 5092 4.895297 GCTCCCATGATCAAAATTTAGGGA 59.105 41.667 0.00 7.36 41.55 4.20
3219 5367 7.942341 GGAGGATTCTCTGAAACTATCTCTCTA 59.058 40.741 0.00 0.00 39.86 2.43
3246 5394 4.061596 GCTGCCTCTCCTTCATATGTAAC 58.938 47.826 1.90 0.00 0.00 2.50
3352 5500 6.571624 AGGGCATAGGAGTAGTAATTATGGA 58.428 40.000 0.00 0.00 0.00 3.41
3362 5510 3.706594 TGACTTCAAGGGCATAGGAGTAG 59.293 47.826 0.00 0.00 0.00 2.57
3363 5511 3.451178 GTGACTTCAAGGGCATAGGAGTA 59.549 47.826 0.00 0.00 0.00 2.59
3364 5512 2.237392 GTGACTTCAAGGGCATAGGAGT 59.763 50.000 0.00 0.00 0.00 3.85
3365 5513 2.237143 TGTGACTTCAAGGGCATAGGAG 59.763 50.000 0.00 0.00 0.00 3.69
3366 5514 2.265367 TGTGACTTCAAGGGCATAGGA 58.735 47.619 0.00 0.00 0.00 2.94
3367 5515 2.787473 TGTGACTTCAAGGGCATAGG 57.213 50.000 0.00 0.00 0.00 2.57
3450 5598 0.465278 TGTGCAGTTACTTGCTGGCA 60.465 50.000 0.00 0.23 44.38 4.92
3487 5635 5.129634 TCTTTGCCAGAATCACTGTTTGTA 58.870 37.500 0.00 0.00 44.40 2.41
3495 5643 4.906065 TGCATATCTTTGCCAGAATCAC 57.094 40.909 0.00 0.00 42.06 3.06
3544 6551 1.988107 CTGGGCACTGGGGATATATGT 59.012 52.381 0.00 0.00 0.00 2.29
3548 6555 0.327480 TGTCTGGGCACTGGGGATAT 60.327 55.000 0.00 0.00 0.00 1.63
3558 6565 1.144716 GATCATCGCTGTCTGGGCA 59.855 57.895 0.00 0.00 0.00 5.36
3639 6646 6.186957 TGGTGCCTGTGATAAAGTGATAAAT 58.813 36.000 0.00 0.00 0.00 1.40
3690 6697 4.473477 AGTAGTTGCTGGTGGATTAGAC 57.527 45.455 0.00 0.00 0.00 2.59
3782 7362 7.591426 CACTTCTGAGGCAAACAAACTATTTAC 59.409 37.037 0.00 0.00 0.00 2.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.