Multiple sequence alignment - TraesCS7A01G553800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G553800 chr7A 100.000 5259 0 0 1 5259 726486190 726480932 0.000000e+00 9712.0
1 TraesCS7A01G553800 chr7A 91.162 826 60 7 4435 5256 128901949 128902765 0.000000e+00 1109.0
2 TraesCS7A01G553800 chr7A 90.357 840 61 16 4435 5259 538803935 538804769 0.000000e+00 1085.0
3 TraesCS7A01G553800 chr7A 92.000 225 16 2 3191 3414 726482922 726482699 1.100000e-81 315.0
4 TraesCS7A01G553800 chr7A 92.000 225 16 2 3269 3492 726483000 726482777 1.100000e-81 315.0
5 TraesCS7A01G553800 chr7A 87.755 147 16 2 3191 3336 726482844 726482699 2.520000e-38 171.0
6 TraesCS7A01G553800 chr7A 87.755 147 16 2 3347 3492 726483000 726482855 2.520000e-38 171.0
7 TraesCS7A01G553800 chr7A 97.403 77 1 1 4440 4515 161765455 161765531 4.270000e-26 130.0
8 TraesCS7A01G553800 chr7D 89.426 3168 192 52 302 3409 630530759 630527675 0.000000e+00 3862.0
9 TraesCS7A01G553800 chr7D 94.944 1167 51 4 3274 4433 630527888 630526723 0.000000e+00 1821.0
10 TraesCS7A01G553800 chr7D 93.436 259 13 3 63 318 612840714 612840457 1.070000e-101 381.0
11 TraesCS7A01G553800 chr7D 90.141 142 12 2 3191 3331 630527815 630527675 3.230000e-42 183.0
12 TraesCS7A01G553800 chr7D 87.234 141 18 0 3352 3492 630527888 630527748 1.520000e-35 161.0
13 TraesCS7A01G553800 chr7B 88.412 3193 228 59 302 3414 733526663 733529793 0.000000e+00 3716.0
14 TraesCS7A01G553800 chr7B 94.885 1173 52 5 3269 4433 733529570 733530742 0.000000e+00 1827.0
15 TraesCS7A01G553800 chr7B 89.521 668 56 12 4457 5118 524618207 524617548 0.000000e+00 833.0
16 TraesCS7A01G553800 chr7B 89.116 147 14 2 3191 3336 733529648 733529793 1.160000e-41 182.0
17 TraesCS7A01G553800 chr1A 89.531 831 54 17 4435 5259 271889820 271889017 0.000000e+00 1022.0
18 TraesCS7A01G553800 chr1A 88.425 838 45 16 4435 5259 405518526 405519324 0.000000e+00 963.0
19 TraesCS7A01G553800 chr1A 87.927 820 32 19 4434 5231 382230913 382231687 0.000000e+00 904.0
20 TraesCS7A01G553800 chr1D 91.803 671 38 8 4435 5092 253205711 253205045 0.000000e+00 918.0
21 TraesCS7A01G553800 chr1B 90.630 651 55 6 4479 5128 327834373 327833728 0.000000e+00 859.0
22 TraesCS7A01G553800 chr1B 90.476 651 56 6 4479 5128 327835778 327835133 0.000000e+00 854.0
23 TraesCS7A01G553800 chr1B 95.492 244 9 2 63 305 39730385 39730143 6.390000e-104 388.0
24 TraesCS7A01G553800 chr4B 88.989 663 63 7 4480 5136 250729302 250729960 0.000000e+00 811.0
25 TraesCS7A01G553800 chr4B 88.650 652 59 11 4481 5128 559850779 559850139 0.000000e+00 780.0
26 TraesCS7A01G553800 chr4B 95.102 245 10 2 61 304 649586237 649585994 8.260000e-103 385.0
27 TraesCS7A01G553800 chr2B 88.502 661 64 9 4485 5138 214826323 214825668 0.000000e+00 789.0
28 TraesCS7A01G553800 chr5A 95.868 242 8 2 64 304 411605546 411605786 1.780000e-104 390.0
29 TraesCS7A01G553800 chr5B 94.800 250 11 2 57 305 180025413 180025165 6.390000e-104 388.0
30 TraesCS7A01G553800 chr5B 95.492 244 9 2 64 306 354302746 354302504 6.390000e-104 388.0
31 TraesCS7A01G553800 chr6B 95.455 242 9 2 64 304 142811710 142811470 8.260000e-103 385.0
32 TraesCS7A01G553800 chr4A 94.048 252 13 2 54 304 650410605 650410855 1.070000e-101 381.0
33 TraesCS7A01G553800 chr2A 94.400 250 10 4 56 304 645960170 645960416 1.070000e-101 381.0
34 TraesCS7A01G553800 chr3A 94.872 39 2 0 5213 5251 360903594 360903632 1.580000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G553800 chr7A 726480932 726486190 5258 True 2136.800000 9712 91.902000 1 5259 5 chr7A.!!$R1 5258
1 TraesCS7A01G553800 chr7A 128901949 128902765 816 False 1109.000000 1109 91.162000 4435 5256 1 chr7A.!!$F1 821
2 TraesCS7A01G553800 chr7A 538803935 538804769 834 False 1085.000000 1085 90.357000 4435 5259 1 chr7A.!!$F3 824
3 TraesCS7A01G553800 chr7D 630526723 630530759 4036 True 1506.750000 3862 90.436250 302 4433 4 chr7D.!!$R2 4131
4 TraesCS7A01G553800 chr7B 733526663 733530742 4079 False 1908.333333 3716 90.804333 302 4433 3 chr7B.!!$F1 4131
5 TraesCS7A01G553800 chr7B 524617548 524618207 659 True 833.000000 833 89.521000 4457 5118 1 chr7B.!!$R1 661
6 TraesCS7A01G553800 chr1A 271889017 271889820 803 True 1022.000000 1022 89.531000 4435 5259 1 chr1A.!!$R1 824
7 TraesCS7A01G553800 chr1A 405518526 405519324 798 False 963.000000 963 88.425000 4435 5259 1 chr1A.!!$F2 824
8 TraesCS7A01G553800 chr1A 382230913 382231687 774 False 904.000000 904 87.927000 4434 5231 1 chr1A.!!$F1 797
9 TraesCS7A01G553800 chr1D 253205045 253205711 666 True 918.000000 918 91.803000 4435 5092 1 chr1D.!!$R1 657
10 TraesCS7A01G553800 chr1B 327833728 327835778 2050 True 856.500000 859 90.553000 4479 5128 2 chr1B.!!$R2 649
11 TraesCS7A01G553800 chr4B 250729302 250729960 658 False 811.000000 811 88.989000 4480 5136 1 chr4B.!!$F1 656
12 TraesCS7A01G553800 chr4B 559850139 559850779 640 True 780.000000 780 88.650000 4481 5128 1 chr4B.!!$R1 647
13 TraesCS7A01G553800 chr2B 214825668 214826323 655 True 789.000000 789 88.502000 4485 5138 1 chr2B.!!$R1 653

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
888 929 0.034337 TTTCTCCGGGTCTGTTTCGG 59.966 55.0 0.0 0.0 44.59 4.30 F
2472 2579 0.036010 GCCTGTATGCCACTCTGTGT 60.036 55.0 0.0 0.0 0.00 3.72 F
2903 3013 0.036388 GTTCCTCCAATGGTCAGCGA 60.036 55.0 0.0 0.0 0.00 4.93 F
2906 3016 0.250234 CCTCCAATGGTCAGCGAAGA 59.750 55.0 0.0 0.0 0.00 2.87 F
3865 3975 0.538584 TGAAGCCGATCATCAGCAGT 59.461 50.0 0.0 0.0 0.00 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2581 2691 0.036164 ACCACCTGCACGATAAGCAA 59.964 50.000 0.00 0.00 42.17 3.91 R
3454 3564 0.037975 GGGCTTGTGATGTTGCCTTG 60.038 55.000 0.00 0.00 44.36 3.61 R
3865 3975 2.060383 CCTCACCGGCTCATCTCCA 61.060 63.158 0.00 0.00 0.00 3.86 R
3921 4031 2.130272 GGAAGAAGATCCCCGCTTTT 57.870 50.000 0.00 0.00 33.05 2.27 R
5208 5482 0.607489 GGTGGATGACAGCTGCTGTT 60.607 55.000 33.33 20.63 45.44 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.973694 ATTATTCCGCGTACCACAGT 57.026 45.000 4.92 0.00 0.00 3.55
21 22 3.865011 TTATTCCGCGTACCACAGTAA 57.135 42.857 4.92 0.00 0.00 2.24
22 23 2.000429 ATTCCGCGTACCACAGTAAC 58.000 50.000 4.92 0.00 0.00 2.50
23 24 0.672889 TTCCGCGTACCACAGTAACA 59.327 50.000 4.92 0.00 0.00 2.41
24 25 0.241749 TCCGCGTACCACAGTAACAG 59.758 55.000 4.92 0.00 0.00 3.16
25 26 1.349259 CCGCGTACCACAGTAACAGC 61.349 60.000 4.92 0.00 0.00 4.40
26 27 0.388134 CGCGTACCACAGTAACAGCT 60.388 55.000 0.00 0.00 0.00 4.24
27 28 1.068474 GCGTACCACAGTAACAGCTG 58.932 55.000 13.48 13.48 41.92 4.24
29 30 2.352030 GCGTACCACAGTAACAGCTGTA 60.352 50.000 22.01 5.84 46.81 2.74
30 31 3.858129 GCGTACCACAGTAACAGCTGTAA 60.858 47.826 22.01 0.00 46.81 2.41
31 32 4.491676 CGTACCACAGTAACAGCTGTAAT 58.508 43.478 22.01 8.20 46.81 1.89
32 33 4.326278 CGTACCACAGTAACAGCTGTAATG 59.674 45.833 22.01 20.13 46.81 1.90
33 34 3.074412 ACCACAGTAACAGCTGTAATGC 58.926 45.455 22.01 9.30 46.81 3.56
34 35 3.073678 CCACAGTAACAGCTGTAATGCA 58.926 45.455 22.01 0.10 46.81 3.96
35 36 3.501828 CCACAGTAACAGCTGTAATGCAA 59.498 43.478 22.01 0.00 46.81 4.08
36 37 4.466828 CACAGTAACAGCTGTAATGCAAC 58.533 43.478 22.01 11.37 46.81 4.17
37 38 4.024133 CACAGTAACAGCTGTAATGCAACA 60.024 41.667 22.01 0.00 46.81 3.33
38 39 4.578516 ACAGTAACAGCTGTAATGCAACAA 59.421 37.500 22.01 0.00 46.68 2.83
39 40 4.911610 CAGTAACAGCTGTAATGCAACAAC 59.088 41.667 22.01 7.34 34.99 3.32
40 41 4.578516 AGTAACAGCTGTAATGCAACAACA 59.421 37.500 22.01 0.00 34.99 3.33
41 42 3.631145 ACAGCTGTAATGCAACAACAG 57.369 42.857 20.16 17.51 42.80 3.16
42 43 2.951642 ACAGCTGTAATGCAACAACAGT 59.048 40.909 20.16 6.32 42.10 3.55
43 44 3.243168 ACAGCTGTAATGCAACAACAGTG 60.243 43.478 20.16 18.85 42.10 3.66
44 45 2.951642 AGCTGTAATGCAACAACAGTGT 59.048 40.909 20.79 10.81 42.10 3.55
45 46 3.003689 AGCTGTAATGCAACAACAGTGTC 59.996 43.478 20.79 9.78 42.10 3.67
46 47 3.853307 GCTGTAATGCAACAACAGTGTCC 60.853 47.826 20.79 7.00 42.10 4.02
47 48 2.621055 TGTAATGCAACAACAGTGTCCC 59.379 45.455 0.00 0.00 36.80 4.46
48 49 1.774110 AATGCAACAACAGTGTCCCA 58.226 45.000 0.00 0.00 36.80 4.37
49 50 1.999648 ATGCAACAACAGTGTCCCAT 58.000 45.000 0.00 0.00 36.80 4.00
50 51 1.317613 TGCAACAACAGTGTCCCATC 58.682 50.000 0.00 0.00 36.80 3.51
51 52 1.317613 GCAACAACAGTGTCCCATCA 58.682 50.000 0.00 0.00 36.80 3.07
52 53 1.680735 GCAACAACAGTGTCCCATCAA 59.319 47.619 0.00 0.00 36.80 2.57
53 54 2.100584 GCAACAACAGTGTCCCATCAAA 59.899 45.455 0.00 0.00 36.80 2.69
54 55 3.705604 CAACAACAGTGTCCCATCAAAC 58.294 45.455 0.00 0.00 36.80 2.93
55 56 3.011566 ACAACAGTGTCCCATCAAACA 57.988 42.857 0.00 0.00 29.49 2.83
56 57 3.360867 ACAACAGTGTCCCATCAAACAA 58.639 40.909 0.00 0.00 29.49 2.83
57 58 3.766591 ACAACAGTGTCCCATCAAACAAA 59.233 39.130 0.00 0.00 29.49 2.83
58 59 4.405358 ACAACAGTGTCCCATCAAACAAAT 59.595 37.500 0.00 0.00 29.49 2.32
59 60 4.853924 ACAGTGTCCCATCAAACAAATC 57.146 40.909 0.00 0.00 0.00 2.17
60 61 4.214310 ACAGTGTCCCATCAAACAAATCA 58.786 39.130 0.00 0.00 0.00 2.57
61 62 4.834496 ACAGTGTCCCATCAAACAAATCAT 59.166 37.500 0.00 0.00 0.00 2.45
62 63 5.165676 CAGTGTCCCATCAAACAAATCATG 58.834 41.667 0.00 0.00 0.00 3.07
63 64 4.834496 AGTGTCCCATCAAACAAATCATGT 59.166 37.500 0.00 0.00 46.82 3.21
64 65 6.009589 AGTGTCCCATCAAACAAATCATGTA 58.990 36.000 0.00 0.00 42.99 2.29
65 66 6.071952 AGTGTCCCATCAAACAAATCATGTAC 60.072 38.462 0.00 0.00 42.99 2.90
66 67 6.009589 TGTCCCATCAAACAAATCATGTACT 58.990 36.000 0.00 0.00 42.99 2.73
67 68 6.150976 TGTCCCATCAAACAAATCATGTACTC 59.849 38.462 0.00 0.00 42.99 2.59
68 69 5.652014 TCCCATCAAACAAATCATGTACTCC 59.348 40.000 0.00 0.00 42.99 3.85
69 70 5.163519 CCCATCAAACAAATCATGTACTCCC 60.164 44.000 0.00 0.00 42.99 4.30
70 71 5.653769 CCATCAAACAAATCATGTACTCCCT 59.346 40.000 0.00 0.00 42.99 4.20
71 72 6.183360 CCATCAAACAAATCATGTACTCCCTC 60.183 42.308 0.00 0.00 42.99 4.30
72 73 5.253330 TCAAACAAATCATGTACTCCCTCC 58.747 41.667 0.00 0.00 42.99 4.30
73 74 5.014123 TCAAACAAATCATGTACTCCCTCCT 59.986 40.000 0.00 0.00 42.99 3.69
74 75 5.520748 AACAAATCATGTACTCCCTCCTT 57.479 39.130 0.00 0.00 42.99 3.36
75 76 5.104259 ACAAATCATGTACTCCCTCCTTC 57.896 43.478 0.00 0.00 41.63 3.46
76 77 4.080299 ACAAATCATGTACTCCCTCCTTCC 60.080 45.833 0.00 0.00 41.63 3.46
77 78 2.940514 TCATGTACTCCCTCCTTCCA 57.059 50.000 0.00 0.00 0.00 3.53
78 79 3.421394 TCATGTACTCCCTCCTTCCAT 57.579 47.619 0.00 0.00 0.00 3.41
79 80 3.309296 TCATGTACTCCCTCCTTCCATC 58.691 50.000 0.00 0.00 0.00 3.51
80 81 3.051803 TCATGTACTCCCTCCTTCCATCT 60.052 47.826 0.00 0.00 0.00 2.90
81 82 4.170053 TCATGTACTCCCTCCTTCCATCTA 59.830 45.833 0.00 0.00 0.00 1.98
82 83 4.834406 TGTACTCCCTCCTTCCATCTAT 57.166 45.455 0.00 0.00 0.00 1.98
83 84 5.942977 TGTACTCCCTCCTTCCATCTATA 57.057 43.478 0.00 0.00 0.00 1.31
84 85 6.485388 TGTACTCCCTCCTTCCATCTATAT 57.515 41.667 0.00 0.00 0.00 0.86
85 86 7.599353 TGTACTCCCTCCTTCCATCTATATA 57.401 40.000 0.00 0.00 0.00 0.86
86 87 7.644062 TGTACTCCCTCCTTCCATCTATATAG 58.356 42.308 3.10 3.10 0.00 1.31
87 88 6.098716 ACTCCCTCCTTCCATCTATATAGG 57.901 45.833 9.89 0.00 0.00 2.57
88 89 5.042979 ACTCCCTCCTTCCATCTATATAGGG 60.043 48.000 9.89 4.49 43.23 3.53
89 90 3.970640 CCCTCCTTCCATCTATATAGGGC 59.029 52.174 9.89 0.00 36.30 5.19
90 91 3.970640 CCTCCTTCCATCTATATAGGGCC 59.029 52.174 9.89 0.00 0.00 5.80
91 92 4.327332 CCTCCTTCCATCTATATAGGGCCT 60.327 50.000 12.58 12.58 0.00 5.19
92 93 5.103043 CCTCCTTCCATCTATATAGGGCCTA 60.103 48.000 17.16 17.16 0.00 3.93
93 94 6.432190 TCCTTCCATCTATATAGGGCCTAA 57.568 41.667 18.91 7.61 0.00 2.69
94 95 7.009960 TCCTTCCATCTATATAGGGCCTAAT 57.990 40.000 18.91 14.19 0.00 1.73
95 96 6.846505 TCCTTCCATCTATATAGGGCCTAATG 59.153 42.308 18.91 15.42 0.00 1.90
96 97 6.465035 CCTTCCATCTATATAGGGCCTAATGC 60.465 46.154 18.91 0.00 40.16 3.56
97 98 4.588951 TCCATCTATATAGGGCCTAATGCG 59.411 45.833 18.91 10.04 42.61 4.73
98 99 4.345257 CCATCTATATAGGGCCTAATGCGT 59.655 45.833 18.91 2.76 42.61 5.24
99 100 5.163301 CCATCTATATAGGGCCTAATGCGTT 60.163 44.000 18.91 1.94 42.61 4.84
100 101 6.349300 CATCTATATAGGGCCTAATGCGTTT 58.651 40.000 18.91 1.12 42.61 3.60
101 102 6.368779 TCTATATAGGGCCTAATGCGTTTT 57.631 37.500 18.91 0.30 42.61 2.43
102 103 6.775708 TCTATATAGGGCCTAATGCGTTTTT 58.224 36.000 18.91 0.00 42.61 1.94
122 123 6.887626 TTTTTAAGACCGCCTTTGACTATT 57.112 33.333 0.00 0.00 36.34 1.73
123 124 5.873179 TTTAAGACCGCCTTTGACTATTG 57.127 39.130 0.00 0.00 36.34 1.90
124 125 3.695830 AAGACCGCCTTTGACTATTGA 57.304 42.857 0.00 0.00 0.00 2.57
125 126 2.973945 AGACCGCCTTTGACTATTGAC 58.026 47.619 0.00 0.00 0.00 3.18
126 127 2.301870 AGACCGCCTTTGACTATTGACA 59.698 45.455 0.00 0.00 0.00 3.58
127 128 3.071479 GACCGCCTTTGACTATTGACAA 58.929 45.455 0.00 0.00 0.00 3.18
128 129 3.074412 ACCGCCTTTGACTATTGACAAG 58.926 45.455 0.00 0.00 0.00 3.16
129 130 3.244422 ACCGCCTTTGACTATTGACAAGA 60.244 43.478 0.00 0.00 0.00 3.02
130 131 3.941483 CCGCCTTTGACTATTGACAAGAT 59.059 43.478 0.00 0.00 0.00 2.40
131 132 4.396166 CCGCCTTTGACTATTGACAAGATT 59.604 41.667 0.00 0.00 0.00 2.40
132 133 5.584649 CCGCCTTTGACTATTGACAAGATTA 59.415 40.000 0.00 0.00 0.00 1.75
133 134 6.093495 CCGCCTTTGACTATTGACAAGATTAA 59.907 38.462 0.00 0.00 0.00 1.40
134 135 7.201732 CCGCCTTTGACTATTGACAAGATTAAT 60.202 37.037 0.00 0.00 0.00 1.40
135 136 8.826710 CGCCTTTGACTATTGACAAGATTAATA 58.173 33.333 0.00 0.00 0.00 0.98
193 194 5.803020 GAAAGCTCCTTTCACATACGAAT 57.197 39.130 11.65 0.00 46.23 3.34
194 195 6.183309 GAAAGCTCCTTTCACATACGAATT 57.817 37.500 11.65 0.00 46.23 2.17
195 196 6.575162 AAAGCTCCTTTCACATACGAATTT 57.425 33.333 0.00 0.00 0.00 1.82
196 197 7.681939 AAAGCTCCTTTCACATACGAATTTA 57.318 32.000 0.00 0.00 0.00 1.40
197 198 7.681939 AAGCTCCTTTCACATACGAATTTAA 57.318 32.000 0.00 0.00 0.00 1.52
198 199 7.073342 AGCTCCTTTCACATACGAATTTAAC 57.927 36.000 0.00 0.00 0.00 2.01
199 200 5.957796 GCTCCTTTCACATACGAATTTAACG 59.042 40.000 0.00 0.00 0.00 3.18
200 201 6.183360 GCTCCTTTCACATACGAATTTAACGA 60.183 38.462 0.00 0.00 34.70 3.85
201 202 7.465513 GCTCCTTTCACATACGAATTTAACGAT 60.466 37.037 0.00 0.00 34.70 3.73
202 203 7.680982 TCCTTTCACATACGAATTTAACGATG 58.319 34.615 0.00 0.00 34.70 3.84
203 204 7.332430 TCCTTTCACATACGAATTTAACGATGT 59.668 33.333 0.00 0.00 34.61 3.06
204 205 7.425309 CCTTTCACATACGAATTTAACGATGTG 59.575 37.037 17.41 17.41 42.65 3.21
205 206 5.791589 TCACATACGAATTTAACGATGTGC 58.208 37.500 18.07 0.00 42.01 4.57
206 207 5.579119 TCACATACGAATTTAACGATGTGCT 59.421 36.000 18.07 0.00 42.01 4.40
207 208 6.091577 TCACATACGAATTTAACGATGTGCTT 59.908 34.615 18.07 0.00 42.01 3.91
208 209 6.740905 CACATACGAATTTAACGATGTGCTTT 59.259 34.615 1.86 0.00 39.51 3.51
209 210 7.270365 CACATACGAATTTAACGATGTGCTTTT 59.730 33.333 1.86 0.00 39.51 2.27
210 211 7.270365 ACATACGAATTTAACGATGTGCTTTTG 59.730 33.333 0.00 0.00 33.82 2.44
211 212 5.516090 ACGAATTTAACGATGTGCTTTTGT 58.484 33.333 0.00 0.00 34.70 2.83
212 213 5.398122 ACGAATTTAACGATGTGCTTTTGTG 59.602 36.000 0.00 0.00 34.70 3.33
213 214 5.398122 CGAATTTAACGATGTGCTTTTGTGT 59.602 36.000 0.00 0.00 0.00 3.72
214 215 6.575572 CGAATTTAACGATGTGCTTTTGTGTA 59.424 34.615 0.00 0.00 0.00 2.90
215 216 7.112287 CGAATTTAACGATGTGCTTTTGTGTAA 59.888 33.333 0.00 0.00 0.00 2.41
216 217 7.851822 ATTTAACGATGTGCTTTTGTGTAAG 57.148 32.000 0.00 0.00 0.00 2.34
217 218 4.893424 AACGATGTGCTTTTGTGTAAGT 57.107 36.364 0.00 0.00 0.00 2.24
218 219 4.893424 ACGATGTGCTTTTGTGTAAGTT 57.107 36.364 0.00 0.00 0.00 2.66
219 220 4.597079 ACGATGTGCTTTTGTGTAAGTTG 58.403 39.130 0.00 0.00 0.00 3.16
220 221 3.421888 CGATGTGCTTTTGTGTAAGTTGC 59.578 43.478 0.00 0.00 0.00 4.17
221 222 3.857549 TGTGCTTTTGTGTAAGTTGCA 57.142 38.095 0.00 0.00 0.00 4.08
222 223 4.383850 TGTGCTTTTGTGTAAGTTGCAT 57.616 36.364 0.00 0.00 0.00 3.96
223 224 4.111198 TGTGCTTTTGTGTAAGTTGCATG 58.889 39.130 0.00 0.00 0.00 4.06
224 225 4.111916 GTGCTTTTGTGTAAGTTGCATGT 58.888 39.130 0.00 0.00 0.00 3.21
225 226 4.207019 GTGCTTTTGTGTAAGTTGCATGTC 59.793 41.667 0.00 0.00 0.00 3.06
226 227 4.142293 TGCTTTTGTGTAAGTTGCATGTCA 60.142 37.500 0.00 0.00 0.00 3.58
227 228 4.984161 GCTTTTGTGTAAGTTGCATGTCAT 59.016 37.500 0.00 0.00 0.00 3.06
228 229 6.148948 GCTTTTGTGTAAGTTGCATGTCATA 58.851 36.000 0.00 0.00 0.00 2.15
229 230 6.808212 GCTTTTGTGTAAGTTGCATGTCATAT 59.192 34.615 0.00 0.00 0.00 1.78
230 231 7.967854 GCTTTTGTGTAAGTTGCATGTCATATA 59.032 33.333 0.00 0.00 0.00 0.86
271 272 8.770850 TTAATCAAAGTTAACCTCGAAAAACG 57.229 30.769 0.88 0.00 44.09 3.60
272 273 4.590226 TCAAAGTTAACCTCGAAAAACGC 58.410 39.130 0.88 0.00 42.26 4.84
273 274 4.094590 TCAAAGTTAACCTCGAAAAACGCA 59.905 37.500 0.88 0.00 42.26 5.24
274 275 4.823790 AAGTTAACCTCGAAAAACGCAT 57.176 36.364 0.88 0.00 42.26 4.73
275 276 4.823790 AGTTAACCTCGAAAAACGCATT 57.176 36.364 0.88 0.00 42.26 3.56
276 277 5.927954 AGTTAACCTCGAAAAACGCATTA 57.072 34.783 0.88 0.00 42.26 1.90
277 278 5.923665 AGTTAACCTCGAAAAACGCATTAG 58.076 37.500 0.88 0.00 42.26 1.73
278 279 3.824414 AACCTCGAAAAACGCATTAGG 57.176 42.857 0.00 0.00 42.26 2.69
279 280 1.467342 ACCTCGAAAAACGCATTAGGC 59.533 47.619 0.00 0.00 42.26 3.93
280 281 1.202143 CCTCGAAAAACGCATTAGGCC 60.202 52.381 0.00 0.00 42.26 5.19
281 282 1.737793 CTCGAAAAACGCATTAGGCCT 59.262 47.619 11.78 11.78 42.26 5.19
282 283 2.933906 CTCGAAAAACGCATTAGGCCTA 59.066 45.455 8.91 8.91 42.26 3.93
283 284 3.537580 TCGAAAAACGCATTAGGCCTAT 58.462 40.909 14.74 0.75 42.26 2.57
284 285 4.695396 TCGAAAAACGCATTAGGCCTATA 58.305 39.130 14.74 5.18 42.26 1.31
285 286 5.302360 TCGAAAAACGCATTAGGCCTATAT 58.698 37.500 14.74 7.44 42.26 0.86
286 287 6.457355 TCGAAAAACGCATTAGGCCTATATA 58.543 36.000 14.74 0.00 42.26 0.86
287 288 6.588756 TCGAAAAACGCATTAGGCCTATATAG 59.411 38.462 14.74 8.67 42.26 1.31
288 289 6.588756 CGAAAAACGCATTAGGCCTATATAGA 59.411 38.462 14.74 0.00 40.31 1.98
289 290 7.277981 CGAAAAACGCATTAGGCCTATATAGAT 59.722 37.037 14.74 0.00 40.31 1.98
290 291 7.849804 AAAACGCATTAGGCCTATATAGATG 57.150 36.000 14.74 14.66 40.31 2.90
291 292 5.537300 ACGCATTAGGCCTATATAGATGG 57.463 43.478 14.74 10.06 40.31 3.51
292 293 5.208890 ACGCATTAGGCCTATATAGATGGA 58.791 41.667 14.74 0.00 40.31 3.41
293 294 5.661312 ACGCATTAGGCCTATATAGATGGAA 59.339 40.000 14.74 0.00 40.31 3.53
294 295 6.183360 ACGCATTAGGCCTATATAGATGGAAG 60.183 42.308 14.74 0.00 40.31 3.46
295 296 6.529220 GCATTAGGCCTATATAGATGGAAGG 58.471 44.000 14.74 0.00 36.11 3.46
296 297 6.327626 GCATTAGGCCTATATAGATGGAAGGA 59.672 42.308 14.74 0.00 36.11 3.36
297 298 7.472663 GCATTAGGCCTATATAGATGGAAGGAG 60.473 44.444 14.74 0.00 36.11 3.69
298 299 4.889780 AGGCCTATATAGATGGAAGGAGG 58.110 47.826 1.29 0.00 0.00 4.30
299 300 3.970640 GGCCTATATAGATGGAAGGAGGG 59.029 52.174 11.53 0.00 0.00 4.30
300 301 4.327010 GGCCTATATAGATGGAAGGAGGGA 60.327 50.000 11.53 0.00 0.00 4.20
317 318 6.206042 AGGAGGGAGTATGAGACAATAAACT 58.794 40.000 0.00 0.00 0.00 2.66
318 319 6.098982 AGGAGGGAGTATGAGACAATAAACTG 59.901 42.308 0.00 0.00 0.00 3.16
319 320 6.127026 GGAGGGAGTATGAGACAATAAACTGT 60.127 42.308 0.00 0.00 0.00 3.55
323 324 6.351881 GGAGTATGAGACAATAAACTGTGGGA 60.352 42.308 0.00 0.00 0.00 4.37
326 327 8.109634 AGTATGAGACAATAAACTGTGGGAAAT 58.890 33.333 0.00 0.00 0.00 2.17
328 329 7.214467 TGAGACAATAAACTGTGGGAAATTC 57.786 36.000 0.00 0.00 0.00 2.17
366 368 2.987413 ACCGTCGTACAAATCACGTA 57.013 45.000 0.00 0.00 40.27 3.57
377 379 7.975058 TCGTACAAATCACGTAAGGATAATCAA 59.025 33.333 0.00 0.00 46.39 2.57
382 385 9.599322 CAAATCACGTAAGGATAATCAAATAGC 57.401 33.333 0.00 0.00 46.39 2.97
405 408 6.149308 AGCAAAATCACACTCAAATCGTATCA 59.851 34.615 0.00 0.00 0.00 2.15
413 416 5.460091 ACACTCAAATCGTATCACATCATCG 59.540 40.000 0.00 0.00 0.00 3.84
415 418 5.687730 ACTCAAATCGTATCACATCATCGTC 59.312 40.000 0.00 0.00 0.00 4.20
417 420 5.915196 TCAAATCGTATCACATCATCGTCTC 59.085 40.000 0.00 0.00 0.00 3.36
420 423 5.243426 TCGTATCACATCATCGTCTCAAA 57.757 39.130 0.00 0.00 0.00 2.69
505 520 7.927629 AGTAAGAAAATACACTTGGACACGTAA 59.072 33.333 0.00 0.00 0.00 3.18
508 523 2.054687 TACACTTGGACACGTAAGCG 57.945 50.000 0.00 0.00 45.62 4.68
568 599 2.759191 CAAAGCCAGAAAAGGAAAGGC 58.241 47.619 0.00 0.00 45.54 4.35
571 602 1.332195 GCCAGAAAAGGAAAGGCTGT 58.668 50.000 0.00 0.00 42.01 4.40
573 604 1.000171 CCAGAAAAGGAAAGGCTGTGC 60.000 52.381 0.00 0.00 0.00 4.57
575 606 0.951558 GAAAAGGAAAGGCTGTGCGA 59.048 50.000 0.00 0.00 0.00 5.10
747 778 2.125225 ACCCCACCTTCCTCCTCC 59.875 66.667 0.00 0.00 0.00 4.30
748 779 2.456840 CCCCACCTTCCTCCTCCT 59.543 66.667 0.00 0.00 0.00 3.69
749 780 1.690985 CCCCACCTTCCTCCTCCTC 60.691 68.421 0.00 0.00 0.00 3.71
835 866 4.796495 CCCCTTTTAGCCGCGCCT 62.796 66.667 0.00 0.00 0.00 5.52
881 922 0.325272 GCCTCTTTTTCTCCGGGTCT 59.675 55.000 0.00 0.00 0.00 3.85
887 928 1.873698 TTTTCTCCGGGTCTGTTTCG 58.126 50.000 0.00 0.00 0.00 3.46
888 929 0.034337 TTTCTCCGGGTCTGTTTCGG 59.966 55.000 0.00 0.00 44.59 4.30
889 930 1.823169 TTCTCCGGGTCTGTTTCGGG 61.823 60.000 0.00 0.00 43.54 5.14
890 931 3.952628 CTCCGGGTCTGTTTCGGGC 62.953 68.421 0.00 0.00 43.54 6.13
894 935 4.324991 GGTCTGTTTCGGGCCGGT 62.325 66.667 27.98 0.00 0.00 5.28
895 936 2.281276 GTCTGTTTCGGGCCGGTT 60.281 61.111 27.98 0.00 0.00 4.44
896 937 1.895231 GTCTGTTTCGGGCCGGTTT 60.895 57.895 27.98 0.00 0.00 3.27
897 938 1.598685 TCTGTTTCGGGCCGGTTTC 60.599 57.895 27.98 14.43 0.00 2.78
898 939 1.599797 CTGTTTCGGGCCGGTTTCT 60.600 57.895 27.98 0.00 0.00 2.52
900 941 0.752376 TGTTTCGGGCCGGTTTCTTT 60.752 50.000 27.98 0.00 0.00 2.52
901 942 0.318360 GTTTCGGGCCGGTTTCTTTG 60.318 55.000 27.98 0.00 0.00 2.77
902 943 1.457009 TTTCGGGCCGGTTTCTTTGG 61.457 55.000 27.98 0.00 0.00 3.28
903 944 3.370231 CGGGCCGGTTTCTTTGGG 61.370 66.667 20.56 0.00 0.00 4.12
1042 1097 2.655685 GCCTCGTTCGATCTCGGC 60.656 66.667 7.28 7.28 40.29 5.54
1165 1220 2.357881 CTGTTCTCGCCTGCTGCA 60.358 61.111 0.88 0.88 41.33 4.41
1167 1222 1.302752 TGTTCTCGCCTGCTGCAAT 60.303 52.632 3.02 0.00 41.33 3.56
1247 1322 5.925969 CCGTTAGACAATTTGCCAAAAAGAT 59.074 36.000 0.00 0.00 0.00 2.40
1254 1333 9.171877 AGACAATTTGCCAAAAAGATTTTTACA 57.828 25.926 3.13 3.07 38.23 2.41
1255 1334 9.780413 GACAATTTGCCAAAAAGATTTTTACAA 57.220 25.926 3.13 8.15 38.23 2.41
1260 1339 8.626093 TTGCCAAAAAGATTTTTACAATTTGC 57.374 26.923 3.13 0.00 38.23 3.68
1261 1340 7.199078 TGCCAAAAAGATTTTTACAATTTGCC 58.801 30.769 3.13 0.00 38.23 4.52
1262 1341 7.148018 TGCCAAAAAGATTTTTACAATTTGCCA 60.148 29.630 3.13 0.00 38.23 4.92
1263 1342 7.704047 GCCAAAAAGATTTTTACAATTTGCCAA 59.296 29.630 3.13 0.00 38.23 4.52
1264 1343 9.578439 CCAAAAAGATTTTTACAATTTGCCAAA 57.422 25.926 3.13 0.00 38.23 3.28
1313 1392 8.447924 TTTCTGCAATAGTAGTAGTATCTCGT 57.552 34.615 0.00 0.00 0.00 4.18
1316 1395 7.713942 TCTGCAATAGTAGTAGTATCTCGTTCA 59.286 37.037 0.00 0.00 0.00 3.18
1318 1397 9.498176 TGCAATAGTAGTAGTATCTCGTTCATA 57.502 33.333 0.00 0.00 0.00 2.15
1319 1398 9.976255 GCAATAGTAGTAGTATCTCGTTCATAG 57.024 37.037 0.00 0.00 0.00 2.23
1413 1494 0.980754 AGGACACAGACCACACCACA 60.981 55.000 0.00 0.00 0.00 4.17
1416 1498 0.465705 ACACAGACCACACCACAGAG 59.534 55.000 0.00 0.00 0.00 3.35
1443 1525 5.944599 TCTTTAGAGGCTTCGAGAACTAGAA 59.055 40.000 0.00 0.00 0.00 2.10
1457 1539 1.985159 ACTAGAAATGGGCAGGACACA 59.015 47.619 0.00 0.00 0.00 3.72
1458 1540 2.290323 ACTAGAAATGGGCAGGACACAC 60.290 50.000 0.00 0.00 0.00 3.82
1459 1541 0.773644 AGAAATGGGCAGGACACACT 59.226 50.000 0.00 0.00 0.00 3.55
1461 1543 2.084546 GAAATGGGCAGGACACACTAC 58.915 52.381 0.00 0.00 0.00 2.73
1505 1595 0.991146 TACCAAGCATGCCAGGAAGA 59.009 50.000 27.33 12.52 0.00 2.87
1511 1601 1.930908 GCATGCCAGGAAGACACAGC 61.931 60.000 6.36 0.00 0.00 4.40
1605 1695 8.974238 ACAGTGTTGGCTGTAATAATACTACTA 58.026 33.333 0.00 0.00 46.68 1.82
1873 1973 1.008538 GTGGAACTGTTTGCAGCCG 60.009 57.895 0.00 0.00 46.30 5.52
1888 1988 2.562912 CCGTGGTCAGCAATGTGC 59.437 61.111 0.00 0.00 45.46 4.57
1945 2050 1.574526 CCTCCAGGAAAGGGATGCCA 61.575 60.000 5.86 0.00 37.39 4.92
2050 2155 3.055094 TCCTGTCAAGGTAGCCATTTCTC 60.055 47.826 0.00 0.00 44.82 2.87
2053 2158 2.673368 GTCAAGGTAGCCATTTCTCACG 59.327 50.000 0.00 0.00 0.00 4.35
2115 2221 5.334879 CCATCGGCGTATCATATATCATCGA 60.335 44.000 6.85 0.00 0.00 3.59
2130 2236 2.154854 ATCGACGTGATGCCTAATGG 57.845 50.000 0.00 0.00 35.45 3.16
2134 2240 2.474816 GACGTGATGCCTAATGGTCTC 58.525 52.381 0.00 0.00 35.27 3.36
2147 2253 1.597742 TGGTCTCTGTCTTGCTTTGC 58.402 50.000 0.00 0.00 0.00 3.68
2205 2311 1.893801 GAGAAGTGGACGGAGGAAGAA 59.106 52.381 0.00 0.00 0.00 2.52
2241 2347 1.450312 GGCGCTGAAGCTGTATGGT 60.450 57.895 7.64 0.00 39.32 3.55
2296 2403 7.095187 GCAGCCTTTATAAGTATAACGCATCTT 60.095 37.037 10.03 0.00 31.20 2.40
2298 2405 8.148351 AGCCTTTATAAGTATAACGCATCTTGA 58.852 33.333 10.03 0.00 31.20 3.02
2433 2540 1.561542 CAAGGTGACTATGGCCCTTCT 59.438 52.381 0.00 0.00 42.68 2.85
2472 2579 0.036010 GCCTGTATGCCACTCTGTGT 60.036 55.000 0.00 0.00 0.00 3.72
2492 2599 7.650504 TCTGTGTACAGCGGTTTATGTTATATC 59.349 37.037 7.14 0.00 43.46 1.63
2528 2638 7.161404 ACATGTACTTGTAGAAGCAGAATTGA 58.839 34.615 12.39 0.00 31.68 2.57
2538 2648 2.295885 AGCAGAATTGATGGCAGCTAC 58.704 47.619 3.69 0.00 0.00 3.58
2547 2657 1.745653 GATGGCAGCTACTTTGAACCC 59.254 52.381 0.00 0.00 0.00 4.11
2550 2660 1.813178 GGCAGCTACTTTGAACCCTTC 59.187 52.381 0.00 0.00 0.00 3.46
2551 2661 2.504367 GCAGCTACTTTGAACCCTTCA 58.496 47.619 0.00 0.00 38.04 3.02
2552 2662 2.485814 GCAGCTACTTTGAACCCTTCAG 59.514 50.000 0.00 0.00 41.38 3.02
2558 2668 4.713792 ACTTTGAACCCTTCAGATGTCT 57.286 40.909 0.00 0.00 41.38 3.41
2578 2688 0.534203 ACCGTGTTTTCTCATGCGGT 60.534 50.000 4.25 4.25 46.14 5.68
2581 2691 1.002900 CGTGTTTTCTCATGCGGTGTT 60.003 47.619 0.00 0.00 0.00 3.32
2643 2753 1.077298 AGATCGAGATCCCTCCCCCT 61.077 60.000 9.27 0.00 38.58 4.79
2700 2810 2.639286 CGTGCCAACTCCTGCAAC 59.361 61.111 0.00 0.00 39.57 4.17
2739 2849 0.604578 GGCAATCCAAGCTTGCTCAA 59.395 50.000 21.43 6.25 46.41 3.02
2742 2852 3.332034 GCAATCCAAGCTTGCTCAAATT 58.668 40.909 21.43 11.16 44.36 1.82
2838 2948 2.222027 GGATCATCGATGTCAAACCCC 58.778 52.381 24.09 11.93 0.00 4.95
2865 2975 0.614979 GCAGTACCTCCCCAGAGTCA 60.615 60.000 0.00 0.00 38.58 3.41
2882 2992 6.267242 CCAGAGTCATCAGATGAGGAGAATAA 59.733 42.308 13.78 0.00 40.53 1.40
2888 2998 7.387397 GTCATCAGATGAGGAGAATAATGTTCC 59.613 40.741 13.78 0.00 40.53 3.62
2898 3008 5.532779 GGAGAATAATGTTCCTCCAATGGTC 59.467 44.000 0.00 0.00 43.47 4.02
2900 3010 6.125029 AGAATAATGTTCCTCCAATGGTCAG 58.875 40.000 0.00 0.00 0.00 3.51
2903 3013 0.036388 GTTCCTCCAATGGTCAGCGA 60.036 55.000 0.00 0.00 0.00 4.93
2906 3016 0.250234 CCTCCAATGGTCAGCGAAGA 59.750 55.000 0.00 0.00 0.00 2.87
3008 3118 4.019174 AGCCTTATTGAATGACCACTTGG 58.981 43.478 0.00 0.00 42.17 3.61
3060 3170 4.015084 CAGGAAGCTGATCAGGAAAACAT 58.985 43.478 23.89 0.00 0.00 2.71
3066 3176 7.882271 GGAAGCTGATCAGGAAAACATAGATAT 59.118 37.037 23.89 0.00 0.00 1.63
3112 3222 5.084519 TCTGATGAGGTACAGGTAACAAGT 58.915 41.667 0.00 0.00 41.41 3.16
3222 3332 4.702131 GCAAACCTCACAATCCTCTAACAT 59.298 41.667 0.00 0.00 0.00 2.71
3276 3386 3.433306 TCCAACACATACAAAGGGAGG 57.567 47.619 0.00 0.00 0.00 4.30
3411 3521 2.311287 CCCCATTGGCTGTAGAGGT 58.689 57.895 0.00 0.00 0.00 3.85
3412 3522 0.625849 CCCCATTGGCTGTAGAGGTT 59.374 55.000 0.00 0.00 0.00 3.50
3413 3523 1.408822 CCCCATTGGCTGTAGAGGTTC 60.409 57.143 0.00 0.00 0.00 3.62
3414 3524 1.408822 CCCATTGGCTGTAGAGGTTCC 60.409 57.143 0.00 0.00 0.00 3.62
3415 3525 1.656652 CATTGGCTGTAGAGGTTCCG 58.343 55.000 0.00 0.00 0.00 4.30
3416 3526 1.207089 CATTGGCTGTAGAGGTTCCGA 59.793 52.381 0.00 0.00 0.00 4.55
3417 3527 0.606604 TTGGCTGTAGAGGTTCCGAC 59.393 55.000 0.00 0.00 0.00 4.79
3418 3528 0.541063 TGGCTGTAGAGGTTCCGACA 60.541 55.000 0.00 0.00 0.00 4.35
3419 3529 0.824759 GGCTGTAGAGGTTCCGACAT 59.175 55.000 0.00 0.00 0.00 3.06
3420 3530 1.471676 GGCTGTAGAGGTTCCGACATG 60.472 57.143 0.00 0.00 0.00 3.21
3421 3531 1.204941 GCTGTAGAGGTTCCGACATGT 59.795 52.381 0.00 0.00 0.00 3.21
3422 3532 2.426024 GCTGTAGAGGTTCCGACATGTA 59.574 50.000 0.00 0.00 0.00 2.29
3423 3533 3.734293 GCTGTAGAGGTTCCGACATGTAC 60.734 52.174 0.00 0.00 36.99 2.90
3424 3534 3.423749 TGTAGAGGTTCCGACATGTACA 58.576 45.455 0.00 0.00 41.90 2.90
3425 3535 3.827876 TGTAGAGGTTCCGACATGTACAA 59.172 43.478 0.00 0.00 41.42 2.41
3426 3536 4.281435 TGTAGAGGTTCCGACATGTACAAA 59.719 41.667 0.00 0.00 41.42 2.83
3427 3537 4.553330 AGAGGTTCCGACATGTACAAAT 57.447 40.909 0.00 0.00 0.00 2.32
3428 3538 4.253685 AGAGGTTCCGACATGTACAAATG 58.746 43.478 0.00 0.00 0.00 2.32
3429 3539 3.343617 AGGTTCCGACATGTACAAATGG 58.656 45.455 0.00 0.00 31.46 3.16
3430 3540 3.008594 AGGTTCCGACATGTACAAATGGA 59.991 43.478 0.00 2.38 31.46 3.41
3431 3541 3.374058 GGTTCCGACATGTACAAATGGAG 59.626 47.826 0.00 0.00 31.46 3.86
3432 3542 4.250464 GTTCCGACATGTACAAATGGAGA 58.750 43.478 0.00 0.00 31.46 3.71
3433 3543 4.123497 TCCGACATGTACAAATGGAGAG 57.877 45.455 0.00 0.00 31.46 3.20
3434 3544 2.609459 CCGACATGTACAAATGGAGAGC 59.391 50.000 0.00 0.00 31.46 4.09
3435 3545 3.261580 CGACATGTACAAATGGAGAGCA 58.738 45.455 0.00 0.00 31.46 4.26
3436 3546 3.684305 CGACATGTACAAATGGAGAGCAA 59.316 43.478 0.00 0.00 31.46 3.91
3437 3547 4.154015 CGACATGTACAAATGGAGAGCAAA 59.846 41.667 0.00 0.00 31.46 3.68
3438 3548 5.163723 CGACATGTACAAATGGAGAGCAAAT 60.164 40.000 0.00 0.00 31.46 2.32
3439 3549 6.199937 ACATGTACAAATGGAGAGCAAATC 57.800 37.500 0.00 0.00 31.46 2.17
3440 3550 5.948162 ACATGTACAAATGGAGAGCAAATCT 59.052 36.000 0.00 0.00 42.61 2.40
3455 3565 7.619050 AGAGCAAATCTCAGAATTCTCTTACA 58.381 34.615 4.57 0.00 44.35 2.41
3456 3566 8.099537 AGAGCAAATCTCAGAATTCTCTTACAA 58.900 33.333 4.57 0.00 44.35 2.41
3457 3567 8.266392 AGCAAATCTCAGAATTCTCTTACAAG 57.734 34.615 4.57 0.00 0.00 3.16
3458 3568 7.336427 AGCAAATCTCAGAATTCTCTTACAAGG 59.664 37.037 4.57 0.00 0.00 3.61
3459 3569 7.470900 CAAATCTCAGAATTCTCTTACAAGGC 58.529 38.462 4.57 0.00 0.00 4.35
3460 3570 5.745312 TCTCAGAATTCTCTTACAAGGCA 57.255 39.130 4.57 0.00 0.00 4.75
3461 3571 6.114187 TCTCAGAATTCTCTTACAAGGCAA 57.886 37.500 4.57 0.00 0.00 4.52
3462 3572 5.934625 TCTCAGAATTCTCTTACAAGGCAAC 59.065 40.000 4.57 0.00 0.00 4.17
3463 3573 5.620206 TCAGAATTCTCTTACAAGGCAACA 58.380 37.500 4.57 0.00 41.41 3.33
3464 3574 6.240894 TCAGAATTCTCTTACAAGGCAACAT 58.759 36.000 4.57 0.00 41.41 2.71
3465 3575 6.372659 TCAGAATTCTCTTACAAGGCAACATC 59.627 38.462 4.57 0.00 41.41 3.06
3466 3576 6.149973 CAGAATTCTCTTACAAGGCAACATCA 59.850 38.462 4.57 0.00 41.41 3.07
3467 3577 5.886960 ATTCTCTTACAAGGCAACATCAC 57.113 39.130 0.00 0.00 41.41 3.06
3468 3578 4.350368 TCTCTTACAAGGCAACATCACA 57.650 40.909 0.00 0.00 41.41 3.58
3469 3579 4.713553 TCTCTTACAAGGCAACATCACAA 58.286 39.130 0.00 0.00 41.41 3.33
3470 3580 4.756642 TCTCTTACAAGGCAACATCACAAG 59.243 41.667 0.00 0.00 41.41 3.16
3471 3581 3.253188 TCTTACAAGGCAACATCACAAGC 59.747 43.478 0.00 0.00 41.41 4.01
3474 3584 2.973082 GGCAACATCACAAGCCCC 59.027 61.111 0.00 0.00 41.25 5.80
3475 3585 1.907807 GGCAACATCACAAGCCCCA 60.908 57.895 0.00 0.00 41.25 4.96
3476 3586 1.259840 GGCAACATCACAAGCCCCAT 61.260 55.000 0.00 0.00 41.25 4.00
3477 3587 0.609662 GCAACATCACAAGCCCCATT 59.390 50.000 0.00 0.00 0.00 3.16
3478 3588 1.673626 GCAACATCACAAGCCCCATTG 60.674 52.381 0.00 0.00 36.22 2.82
3479 3589 1.066716 CAACATCACAAGCCCCATTGG 60.067 52.381 0.00 0.00 34.36 3.16
3663 3773 2.875188 TGGCACACAACGGAAAAGT 58.125 47.368 0.00 0.00 0.00 2.66
3711 3821 2.800250 CCCTCCAGTTGAATCAAGCTT 58.200 47.619 0.00 0.00 0.00 3.74
3865 3975 0.538584 TGAAGCCGATCATCAGCAGT 59.461 50.000 0.00 0.00 0.00 4.40
3890 4000 4.974438 AGCCGGTGAGGGGGTTCA 62.974 66.667 1.90 0.00 41.48 3.18
3921 4031 6.455647 ACAAAAGATGTAGAGTCGAATGACA 58.544 36.000 0.00 0.00 43.69 3.58
4000 4110 4.016444 GTTCCACATATTCCTTTGCTCCA 58.984 43.478 0.00 0.00 0.00 3.86
4001 4111 3.620488 TCCACATATTCCTTTGCTCCAC 58.380 45.455 0.00 0.00 0.00 4.02
4048 4159 4.778143 GATTGGCGGCGGTCTGGT 62.778 66.667 9.78 0.00 0.00 4.00
4118 4229 0.884704 AGGTGGTTGCTGTAAGTGCG 60.885 55.000 0.00 0.00 35.30 5.34
4273 4391 1.473080 GCATGTTTGGTTGTTGCTGGT 60.473 47.619 0.00 0.00 0.00 4.00
4346 4464 2.970974 GCAGAGCTTGGCCGTGTTC 61.971 63.158 0.00 0.35 0.00 3.18
4353 4472 1.593196 CTTGGCCGTGTTCTTCAGAA 58.407 50.000 0.00 0.00 0.00 3.02
4357 4476 1.610624 GGCCGTGTTCTTCAGAATGGA 60.611 52.381 8.75 0.00 36.33 3.41
4358 4477 1.734465 GCCGTGTTCTTCAGAATGGAG 59.266 52.381 8.75 0.00 45.63 3.86
4371 4490 3.958798 CAGAATGGAGCATGGAAGGAAAT 59.041 43.478 0.00 0.00 0.00 2.17
4386 4505 8.365060 TGGAAGGAAATATTGTTCATCATTGT 57.635 30.769 0.00 0.00 0.00 2.71
4433 4553 0.740149 TGCCATGGCTGCTAAATTCG 59.260 50.000 35.53 0.00 42.51 3.34
4434 4554 0.740737 GCCATGGCTGCTAAATTCGT 59.259 50.000 29.98 0.00 38.26 3.85
4435 4555 1.534595 GCCATGGCTGCTAAATTCGTG 60.535 52.381 29.98 0.00 38.26 4.35
4436 4556 1.745087 CCATGGCTGCTAAATTCGTGT 59.255 47.619 0.00 0.00 0.00 4.49
4437 4557 2.164219 CCATGGCTGCTAAATTCGTGTT 59.836 45.455 0.00 0.00 0.00 3.32
4438 4558 3.376859 CCATGGCTGCTAAATTCGTGTTA 59.623 43.478 0.00 0.00 0.00 2.41
4439 4559 4.142491 CCATGGCTGCTAAATTCGTGTTAA 60.142 41.667 0.00 0.00 0.00 2.01
4473 4593 1.380246 CTAATGGCTTGGGCTGGCA 60.380 57.895 2.88 4.79 43.90 4.92
4713 4833 6.238621 CGCCATAACAATTTGGTATCAGCTAA 60.239 38.462 17.54 0.00 35.34 3.09
5052 5233 2.125326 CATCCACCGCCTCGTCCTA 61.125 63.158 0.00 0.00 0.00 2.94
5235 5509 2.272146 GTCATCCACCGCCACCAT 59.728 61.111 0.00 0.00 0.00 3.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 0.388134 AGCTGTTACTGTGGTACGCG 60.388 55.000 3.53 3.53 45.01 6.01
8 9 1.068474 CAGCTGTTACTGTGGTACGC 58.932 55.000 5.25 0.00 40.62 4.42
16 17 4.747540 TGTTGCATTACAGCTGTTACTG 57.252 40.909 27.06 19.62 43.59 2.74
17 18 4.578516 TGTTGTTGCATTACAGCTGTTACT 59.421 37.500 27.06 7.20 34.99 2.24
18 19 4.854399 TGTTGTTGCATTACAGCTGTTAC 58.146 39.130 27.06 12.51 34.99 2.50
19 20 4.578516 ACTGTTGTTGCATTACAGCTGTTA 59.421 37.500 27.06 17.54 42.28 2.41
20 21 3.381272 ACTGTTGTTGCATTACAGCTGTT 59.619 39.130 27.06 4.60 42.28 3.16
21 22 2.951642 ACTGTTGTTGCATTACAGCTGT 59.048 40.909 25.12 25.12 42.28 4.40
22 23 3.243168 ACACTGTTGTTGCATTACAGCTG 60.243 43.478 13.48 13.48 42.28 4.24
23 24 2.951642 ACACTGTTGTTGCATTACAGCT 59.048 40.909 18.05 7.50 42.28 4.24
24 25 3.300009 GACACTGTTGTTGCATTACAGC 58.700 45.455 18.05 9.98 42.28 4.40
25 26 3.304659 GGGACACTGTTGTTGCATTACAG 60.305 47.826 17.05 17.05 43.72 2.74
26 27 2.621055 GGGACACTGTTGTTGCATTACA 59.379 45.455 0.00 0.00 35.47 2.41
27 28 2.621055 TGGGACACTGTTGTTGCATTAC 59.379 45.455 0.00 0.00 35.47 1.89
28 29 2.937519 TGGGACACTGTTGTTGCATTA 58.062 42.857 0.00 0.00 35.47 1.90
29 30 1.774110 TGGGACACTGTTGTTGCATT 58.226 45.000 0.00 0.00 35.47 3.56
30 31 3.511362 TGGGACACTGTTGTTGCAT 57.489 47.368 0.00 0.00 35.47 3.96
37 38 9.042477 ACATGATTTGTTTGATGGGACACTGTT 62.042 37.037 0.00 0.00 36.47 3.16
38 39 7.645102 ACATGATTTGTTTGATGGGACACTGT 61.645 38.462 0.00 0.00 36.47 3.55
39 40 5.279106 ACATGATTTGTTTGATGGGACACTG 60.279 40.000 0.00 0.00 36.47 3.66
40 41 4.834496 ACATGATTTGTTTGATGGGACACT 59.166 37.500 0.00 0.00 36.47 3.55
41 42 5.138125 ACATGATTTGTTTGATGGGACAC 57.862 39.130 0.00 0.00 36.47 3.67
42 43 6.009589 AGTACATGATTTGTTTGATGGGACA 58.990 36.000 0.00 0.00 41.09 4.02
43 44 6.404734 GGAGTACATGATTTGTTTGATGGGAC 60.405 42.308 0.00 0.00 39.87 4.46
44 45 5.652014 GGAGTACATGATTTGTTTGATGGGA 59.348 40.000 0.00 0.00 39.87 4.37
45 46 5.163519 GGGAGTACATGATTTGTTTGATGGG 60.164 44.000 0.00 0.00 39.87 4.00
46 47 5.653769 AGGGAGTACATGATTTGTTTGATGG 59.346 40.000 0.00 0.00 39.87 3.51
47 48 6.183360 GGAGGGAGTACATGATTTGTTTGATG 60.183 42.308 0.00 0.00 39.87 3.07
48 49 5.888161 GGAGGGAGTACATGATTTGTTTGAT 59.112 40.000 0.00 0.00 39.87 2.57
49 50 5.014123 AGGAGGGAGTACATGATTTGTTTGA 59.986 40.000 0.00 0.00 39.87 2.69
50 51 5.256474 AGGAGGGAGTACATGATTTGTTTG 58.744 41.667 0.00 0.00 39.87 2.93
51 52 5.520748 AGGAGGGAGTACATGATTTGTTT 57.479 39.130 0.00 0.00 39.87 2.83
52 53 5.501156 GAAGGAGGGAGTACATGATTTGTT 58.499 41.667 0.00 0.00 39.87 2.83
53 54 4.080299 GGAAGGAGGGAGTACATGATTTGT 60.080 45.833 0.00 0.00 42.62 2.83
54 55 4.080356 TGGAAGGAGGGAGTACATGATTTG 60.080 45.833 0.00 0.00 0.00 2.32
55 56 4.111577 TGGAAGGAGGGAGTACATGATTT 58.888 43.478 0.00 0.00 0.00 2.17
56 57 3.736094 TGGAAGGAGGGAGTACATGATT 58.264 45.455 0.00 0.00 0.00 2.57
57 58 3.421394 TGGAAGGAGGGAGTACATGAT 57.579 47.619 0.00 0.00 0.00 2.45
58 59 2.940514 TGGAAGGAGGGAGTACATGA 57.059 50.000 0.00 0.00 0.00 3.07
59 60 3.312890 AGATGGAAGGAGGGAGTACATG 58.687 50.000 0.00 0.00 0.00 3.21
60 61 3.715648 AGATGGAAGGAGGGAGTACAT 57.284 47.619 0.00 0.00 0.00 2.29
61 62 4.834406 ATAGATGGAAGGAGGGAGTACA 57.166 45.455 0.00 0.00 0.00 2.90
62 63 7.064229 CCTATATAGATGGAAGGAGGGAGTAC 58.936 46.154 11.53 0.00 0.00 2.73
63 64 6.162420 CCCTATATAGATGGAAGGAGGGAGTA 59.838 46.154 11.53 0.00 44.48 2.59
64 65 5.042979 CCCTATATAGATGGAAGGAGGGAGT 60.043 48.000 11.53 0.00 44.48 3.85
65 66 5.463154 CCCTATATAGATGGAAGGAGGGAG 58.537 50.000 11.53 0.00 44.48 4.30
66 67 4.327010 GCCCTATATAGATGGAAGGAGGGA 60.327 50.000 11.53 0.00 44.48 4.20
67 68 3.970640 GCCCTATATAGATGGAAGGAGGG 59.029 52.174 11.53 3.52 44.52 4.30
68 69 3.970640 GGCCCTATATAGATGGAAGGAGG 59.029 52.174 11.53 1.87 0.00 4.30
69 70 4.889780 AGGCCCTATATAGATGGAAGGAG 58.110 47.826 11.53 0.00 0.00 3.69
70 71 4.994411 AGGCCCTATATAGATGGAAGGA 57.006 45.455 11.53 0.00 0.00 3.36
71 72 6.465035 GCATTAGGCCCTATATAGATGGAAGG 60.465 46.154 11.53 3.94 36.11 3.46
72 73 6.529220 GCATTAGGCCCTATATAGATGGAAG 58.471 44.000 11.53 0.00 36.11 3.46
73 74 5.070446 CGCATTAGGCCCTATATAGATGGAA 59.930 44.000 11.53 0.00 40.31 3.53
74 75 4.588951 CGCATTAGGCCCTATATAGATGGA 59.411 45.833 11.53 0.00 40.31 3.41
75 76 4.345257 ACGCATTAGGCCCTATATAGATGG 59.655 45.833 11.53 6.04 40.31 3.51
76 77 5.537300 ACGCATTAGGCCCTATATAGATG 57.463 43.478 11.53 6.87 40.31 2.90
77 78 6.561519 AAACGCATTAGGCCCTATATAGAT 57.438 37.500 11.53 0.00 40.31 1.98
78 79 6.368779 AAAACGCATTAGGCCCTATATAGA 57.631 37.500 11.53 0.00 40.31 1.98
99 100 6.487331 TCAATAGTCAAAGGCGGTCTTAAAAA 59.513 34.615 0.00 0.00 34.78 1.94
100 101 5.998981 TCAATAGTCAAAGGCGGTCTTAAAA 59.001 36.000 0.00 0.00 34.78 1.52
101 102 5.410439 GTCAATAGTCAAAGGCGGTCTTAAA 59.590 40.000 0.00 0.00 34.78 1.52
102 103 4.933400 GTCAATAGTCAAAGGCGGTCTTAA 59.067 41.667 0.00 0.00 34.78 1.85
103 104 4.020928 TGTCAATAGTCAAAGGCGGTCTTA 60.021 41.667 0.00 0.00 34.78 2.10
104 105 3.244422 TGTCAATAGTCAAAGGCGGTCTT 60.244 43.478 0.00 0.00 37.28 3.01
105 106 2.301870 TGTCAATAGTCAAAGGCGGTCT 59.698 45.455 0.00 0.00 0.00 3.85
106 107 2.695359 TGTCAATAGTCAAAGGCGGTC 58.305 47.619 0.00 0.00 0.00 4.79
107 108 2.851263 TGTCAATAGTCAAAGGCGGT 57.149 45.000 0.00 0.00 0.00 5.68
108 109 3.334691 TCTTGTCAATAGTCAAAGGCGG 58.665 45.455 0.00 0.00 0.00 6.13
109 110 5.551760 AATCTTGTCAATAGTCAAAGGCG 57.448 39.130 0.00 0.00 0.00 5.52
171 172 5.803020 ATTCGTATGTGAAAGGAGCTTTC 57.197 39.130 0.00 0.00 46.88 2.62
172 173 6.575162 AAATTCGTATGTGAAAGGAGCTTT 57.425 33.333 0.00 0.00 36.29 3.51
173 174 7.527457 GTTAAATTCGTATGTGAAAGGAGCTT 58.473 34.615 0.00 0.00 0.00 3.74
174 175 6.183360 CGTTAAATTCGTATGTGAAAGGAGCT 60.183 38.462 0.00 0.00 0.00 4.09
175 176 5.957796 CGTTAAATTCGTATGTGAAAGGAGC 59.042 40.000 0.00 0.00 0.00 4.70
176 177 7.285783 TCGTTAAATTCGTATGTGAAAGGAG 57.714 36.000 0.00 0.00 0.00 3.69
177 178 7.332430 ACATCGTTAAATTCGTATGTGAAAGGA 59.668 33.333 0.00 0.00 32.59 3.36
178 179 7.425309 CACATCGTTAAATTCGTATGTGAAAGG 59.575 37.037 16.50 0.00 42.19 3.11
179 180 7.045612 GCACATCGTTAAATTCGTATGTGAAAG 60.046 37.037 21.03 7.38 42.19 2.62
180 181 6.739100 GCACATCGTTAAATTCGTATGTGAAA 59.261 34.615 21.03 0.00 42.19 2.69
181 182 6.091577 AGCACATCGTTAAATTCGTATGTGAA 59.908 34.615 21.03 0.00 42.19 3.18
182 183 5.579119 AGCACATCGTTAAATTCGTATGTGA 59.421 36.000 21.03 1.70 42.19 3.58
183 184 5.795766 AGCACATCGTTAAATTCGTATGTG 58.204 37.500 16.83 16.83 42.31 3.21
184 185 6.417191 AAGCACATCGTTAAATTCGTATGT 57.583 33.333 0.00 0.00 33.32 2.29
185 186 7.270365 ACAAAAGCACATCGTTAAATTCGTATG 59.730 33.333 0.00 0.00 0.00 2.39
186 187 7.270365 CACAAAAGCACATCGTTAAATTCGTAT 59.730 33.333 0.00 0.00 0.00 3.06
187 188 6.575572 CACAAAAGCACATCGTTAAATTCGTA 59.424 34.615 0.00 0.00 0.00 3.43
188 189 5.398122 CACAAAAGCACATCGTTAAATTCGT 59.602 36.000 0.00 0.00 0.00 3.85
189 190 5.398122 ACACAAAAGCACATCGTTAAATTCG 59.602 36.000 0.00 0.00 0.00 3.34
190 191 6.747659 ACACAAAAGCACATCGTTAAATTC 57.252 33.333 0.00 0.00 0.00 2.17
191 192 7.918562 ACTTACACAAAAGCACATCGTTAAATT 59.081 29.630 0.00 0.00 0.00 1.82
192 193 7.422399 ACTTACACAAAAGCACATCGTTAAAT 58.578 30.769 0.00 0.00 0.00 1.40
193 194 6.787225 ACTTACACAAAAGCACATCGTTAAA 58.213 32.000 0.00 0.00 0.00 1.52
194 195 6.366315 ACTTACACAAAAGCACATCGTTAA 57.634 33.333 0.00 0.00 0.00 2.01
195 196 5.994887 ACTTACACAAAAGCACATCGTTA 57.005 34.783 0.00 0.00 0.00 3.18
196 197 4.893424 ACTTACACAAAAGCACATCGTT 57.107 36.364 0.00 0.00 0.00 3.85
197 198 4.597079 CAACTTACACAAAAGCACATCGT 58.403 39.130 0.00 0.00 0.00 3.73
198 199 3.421888 GCAACTTACACAAAAGCACATCG 59.578 43.478 0.00 0.00 0.00 3.84
199 200 4.358851 TGCAACTTACACAAAAGCACATC 58.641 39.130 0.00 0.00 0.00 3.06
200 201 4.383850 TGCAACTTACACAAAAGCACAT 57.616 36.364 0.00 0.00 0.00 3.21
201 202 3.857549 TGCAACTTACACAAAAGCACA 57.142 38.095 0.00 0.00 0.00 4.57
202 203 4.111916 ACATGCAACTTACACAAAAGCAC 58.888 39.130 0.00 0.00 32.92 4.40
203 204 4.142293 TGACATGCAACTTACACAAAAGCA 60.142 37.500 0.00 0.00 34.78 3.91
204 205 4.358851 TGACATGCAACTTACACAAAAGC 58.641 39.130 0.00 0.00 0.00 3.51
245 246 9.224058 CGTTTTTCGAGGTTAACTTTGATTAAA 57.776 29.630 8.38 9.19 42.86 1.52
246 247 7.376601 GCGTTTTTCGAGGTTAACTTTGATTAA 59.623 33.333 8.38 4.30 42.86 1.40
247 248 6.852345 GCGTTTTTCGAGGTTAACTTTGATTA 59.148 34.615 8.38 0.00 42.86 1.75
248 249 5.684184 GCGTTTTTCGAGGTTAACTTTGATT 59.316 36.000 8.38 0.00 42.86 2.57
249 250 5.209977 GCGTTTTTCGAGGTTAACTTTGAT 58.790 37.500 8.38 0.00 42.86 2.57
250 251 4.094590 TGCGTTTTTCGAGGTTAACTTTGA 59.905 37.500 5.42 4.44 42.86 2.69
251 252 4.344448 TGCGTTTTTCGAGGTTAACTTTG 58.656 39.130 5.42 1.72 42.86 2.77
252 253 4.619437 TGCGTTTTTCGAGGTTAACTTT 57.381 36.364 5.42 0.00 42.86 2.66
253 254 4.823790 ATGCGTTTTTCGAGGTTAACTT 57.176 36.364 5.42 0.00 42.86 2.66
254 255 4.823790 AATGCGTTTTTCGAGGTTAACT 57.176 36.364 5.42 0.00 42.86 2.24
255 256 5.084055 CCTAATGCGTTTTTCGAGGTTAAC 58.916 41.667 0.00 0.00 42.86 2.01
256 257 4.378666 GCCTAATGCGTTTTTCGAGGTTAA 60.379 41.667 0.00 0.00 42.86 2.01
257 258 3.125658 GCCTAATGCGTTTTTCGAGGTTA 59.874 43.478 0.00 0.00 42.86 2.85
258 259 2.095415 GCCTAATGCGTTTTTCGAGGTT 60.095 45.455 0.00 0.00 42.86 3.50
259 260 1.467342 GCCTAATGCGTTTTTCGAGGT 59.533 47.619 0.00 0.00 42.86 3.85
260 261 1.202143 GGCCTAATGCGTTTTTCGAGG 60.202 52.381 0.00 0.00 42.61 4.63
261 262 1.737793 AGGCCTAATGCGTTTTTCGAG 59.262 47.619 1.29 0.00 42.61 4.04
262 263 1.816074 AGGCCTAATGCGTTTTTCGA 58.184 45.000 1.29 0.00 42.61 3.71
263 264 3.963383 ATAGGCCTAATGCGTTTTTCG 57.037 42.857 18.42 0.00 42.61 3.46
264 265 7.900782 TCTATATAGGCCTAATGCGTTTTTC 57.099 36.000 18.42 0.00 42.61 2.29
265 266 7.336931 CCATCTATATAGGCCTAATGCGTTTTT 59.663 37.037 18.42 0.00 42.61 1.94
266 267 6.823689 CCATCTATATAGGCCTAATGCGTTTT 59.176 38.462 18.42 0.00 42.61 2.43
267 268 6.156256 TCCATCTATATAGGCCTAATGCGTTT 59.844 38.462 18.42 0.05 42.61 3.60
268 269 5.661312 TCCATCTATATAGGCCTAATGCGTT 59.339 40.000 18.42 0.89 42.61 4.84
269 270 5.208890 TCCATCTATATAGGCCTAATGCGT 58.791 41.667 18.42 1.73 42.61 5.24
270 271 5.791336 TCCATCTATATAGGCCTAATGCG 57.209 43.478 18.42 9.48 42.61 4.73
271 272 6.327626 TCCTTCCATCTATATAGGCCTAATGC 59.672 42.308 18.42 0.00 40.16 3.56
272 273 7.016072 CCTCCTTCCATCTATATAGGCCTAATG 59.984 44.444 18.42 14.94 0.00 1.90
273 274 7.079048 CCTCCTTCCATCTATATAGGCCTAAT 58.921 42.308 18.42 13.70 0.00 1.73
274 275 6.444704 CCTCCTTCCATCTATATAGGCCTAA 58.555 44.000 18.42 6.84 0.00 2.69
275 276 5.103043 CCCTCCTTCCATCTATATAGGCCTA 60.103 48.000 16.60 16.60 0.00 3.93
276 277 4.327332 CCCTCCTTCCATCTATATAGGCCT 60.327 50.000 11.78 11.78 0.00 5.19
277 278 3.970640 CCCTCCTTCCATCTATATAGGCC 59.029 52.174 9.89 0.00 0.00 5.19
278 279 4.884961 TCCCTCCTTCCATCTATATAGGC 58.115 47.826 9.89 0.00 0.00 3.93
279 280 6.098716 ACTCCCTCCTTCCATCTATATAGG 57.901 45.833 9.89 0.00 0.00 2.57
280 281 8.506921 TCATACTCCCTCCTTCCATCTATATAG 58.493 40.741 3.10 3.10 0.00 1.31
281 282 8.420806 TCATACTCCCTCCTTCCATCTATATA 57.579 38.462 0.00 0.00 0.00 0.86
282 283 7.187336 TCTCATACTCCCTCCTTCCATCTATAT 59.813 40.741 0.00 0.00 0.00 0.86
283 284 6.509280 TCTCATACTCCCTCCTTCCATCTATA 59.491 42.308 0.00 0.00 0.00 1.31
284 285 5.317262 TCTCATACTCCCTCCTTCCATCTAT 59.683 44.000 0.00 0.00 0.00 1.98
285 286 4.670247 TCTCATACTCCCTCCTTCCATCTA 59.330 45.833 0.00 0.00 0.00 1.98
286 287 3.469006 TCTCATACTCCCTCCTTCCATCT 59.531 47.826 0.00 0.00 0.00 2.90
287 288 3.576550 GTCTCATACTCCCTCCTTCCATC 59.423 52.174 0.00 0.00 0.00 3.51
288 289 3.051803 TGTCTCATACTCCCTCCTTCCAT 60.052 47.826 0.00 0.00 0.00 3.41
289 290 2.314852 TGTCTCATACTCCCTCCTTCCA 59.685 50.000 0.00 0.00 0.00 3.53
290 291 3.033659 TGTCTCATACTCCCTCCTTCC 57.966 52.381 0.00 0.00 0.00 3.46
291 292 6.732896 TTATTGTCTCATACTCCCTCCTTC 57.267 41.667 0.00 0.00 0.00 3.46
292 293 6.674419 AGTTTATTGTCTCATACTCCCTCCTT 59.326 38.462 0.00 0.00 0.00 3.36
293 294 6.098982 CAGTTTATTGTCTCATACTCCCTCCT 59.901 42.308 0.00 0.00 0.00 3.69
294 295 6.127026 ACAGTTTATTGTCTCATACTCCCTCC 60.127 42.308 0.00 0.00 0.00 4.30
295 296 6.758886 CACAGTTTATTGTCTCATACTCCCTC 59.241 42.308 0.00 0.00 0.00 4.30
296 297 6.352222 CCACAGTTTATTGTCTCATACTCCCT 60.352 42.308 0.00 0.00 0.00 4.20
297 298 5.817816 CCACAGTTTATTGTCTCATACTCCC 59.182 44.000 0.00 0.00 0.00 4.30
298 299 5.817816 CCCACAGTTTATTGTCTCATACTCC 59.182 44.000 0.00 0.00 0.00 3.85
299 300 6.640518 TCCCACAGTTTATTGTCTCATACTC 58.359 40.000 0.00 0.00 0.00 2.59
300 301 6.620877 TCCCACAGTTTATTGTCTCATACT 57.379 37.500 0.00 0.00 0.00 2.12
317 318 3.536548 CGTACCGGAATTTCCCACA 57.463 52.632 9.46 0.00 31.13 4.17
335 337 0.036105 ACGACGGTTTGGAATACCCC 60.036 55.000 0.00 0.00 34.81 4.95
336 338 2.270923 GTACGACGGTTTGGAATACCC 58.729 52.381 0.00 0.00 34.81 3.69
337 339 2.958213 TGTACGACGGTTTGGAATACC 58.042 47.619 0.00 0.00 0.00 2.73
366 368 9.807649 GTGTGATTTTGCTATTTGATTATCCTT 57.192 29.630 0.00 0.00 0.00 3.36
377 379 6.913170 ACGATTTGAGTGTGATTTTGCTATT 58.087 32.000 0.00 0.00 0.00 1.73
382 385 7.297391 TGTGATACGATTTGAGTGTGATTTTG 58.703 34.615 0.00 0.00 0.00 2.44
405 408 5.589855 TGCCATAATTTTGAGACGATGATGT 59.410 36.000 0.00 0.00 0.00 3.06
459 462 7.988599 TCTTACTAGCTCCAAACAAAAGTGTAA 59.011 33.333 0.00 0.00 36.80 2.41
505 520 1.118356 CCCTTATCTGCTCCTCCGCT 61.118 60.000 0.00 0.00 0.00 5.52
508 523 2.390225 TCTCCCTTATCTGCTCCTCC 57.610 55.000 0.00 0.00 0.00 4.30
821 852 2.517450 CGAGAGGCGCGGCTAAAAG 61.517 63.158 36.42 21.96 0.00 2.27
881 922 0.752376 AAAGAAACCGGCCCGAAACA 60.752 50.000 3.71 0.00 0.00 2.83
887 928 2.203582 ACCCAAAGAAACCGGCCC 60.204 61.111 0.00 0.00 0.00 5.80
888 929 2.622962 CGACCCAAAGAAACCGGCC 61.623 63.158 0.00 0.00 0.00 6.13
889 930 2.951458 CGACCCAAAGAAACCGGC 59.049 61.111 0.00 0.00 0.00 6.13
890 931 2.622962 GGCGACCCAAAGAAACCGG 61.623 63.158 0.00 0.00 0.00 5.28
891 932 2.951458 GGCGACCCAAAGAAACCG 59.049 61.111 0.00 0.00 0.00 4.44
893 934 2.951458 CCGGCGACCCAAAGAAAC 59.049 61.111 9.30 0.00 0.00 2.78
894 935 2.981350 GCCGGCGACCCAAAGAAA 60.981 61.111 12.58 0.00 0.00 2.52
948 992 3.554342 CTGGGATCGGCCAGGAGG 61.554 72.222 2.24 0.00 38.95 4.30
949 993 4.247380 GCTGGGATCGGCCAGGAG 62.247 72.222 16.91 0.00 39.31 3.69
954 998 4.899239 CTCACGCTGGGATCGGCC 62.899 72.222 0.00 0.00 42.12 6.13
1097 1152 0.458669 TGGATCTTTACCTCCGCGAC 59.541 55.000 8.23 0.00 34.05 5.19
1139 1194 1.862806 GCGAGAACAGCCACAGAAC 59.137 57.895 0.00 0.00 0.00 3.01
1413 1494 5.686753 TCTCGAAGCCTCTAAAGATACTCT 58.313 41.667 0.00 0.00 0.00 3.24
1416 1498 6.139048 AGTTCTCGAAGCCTCTAAAGATAC 57.861 41.667 0.00 0.00 0.00 2.24
1443 1525 1.279271 GAGTAGTGTGTCCTGCCCATT 59.721 52.381 0.00 0.00 0.00 3.16
1457 1539 7.567622 TGGCTCTAACTAAAATATGGGAGTAGT 59.432 37.037 0.00 0.00 0.00 2.73
1458 1540 7.873505 GTGGCTCTAACTAAAATATGGGAGTAG 59.126 40.741 0.00 0.00 0.00 2.57
1459 1541 7.202066 GGTGGCTCTAACTAAAATATGGGAGTA 60.202 40.741 0.00 0.00 0.00 2.59
1461 1543 5.998363 GGTGGCTCTAACTAAAATATGGGAG 59.002 44.000 0.00 0.00 0.00 4.30
1505 1595 2.362077 GTTTCTGGATTTGGTGCTGTGT 59.638 45.455 0.00 0.00 0.00 3.72
1511 1601 4.870123 TCCATTGTTTCTGGATTTGGTG 57.130 40.909 0.00 0.00 37.87 4.17
1618 1709 8.472413 CCAACCATTCATGACTTAAATGAAGAT 58.528 33.333 0.00 0.00 44.81 2.40
1630 1721 3.191371 GTCCTCAACCAACCATTCATGAC 59.809 47.826 0.00 0.00 0.00 3.06
1690 1781 9.028185 GTACTGGTAAAAATCTACTATCAACCG 57.972 37.037 0.00 0.00 0.00 4.44
1774 1874 7.698130 GGTAACTGAACATTGCAGTATGATTTC 59.302 37.037 5.39 1.08 45.27 2.17
1779 1879 4.096382 GGGGTAACTGAACATTGCAGTATG 59.904 45.833 0.00 0.00 45.27 2.39
1888 1988 5.911752 ACAATATCAGTACTTCAGCCAGAG 58.088 41.667 0.00 0.00 0.00 3.35
1945 2050 3.176411 TCGGCATCCTAGATGAATCCAT 58.824 45.455 8.74 0.00 35.29 3.41
2016 2121 0.253894 TGACAGGATGCTCACCCATG 59.746 55.000 0.00 0.00 42.53 3.66
2050 2155 5.177511 TGTTCTTAGATCTCAAACTTGCGTG 59.822 40.000 0.00 0.00 0.00 5.34
2115 2221 2.111384 AGAGACCATTAGGCATCACGT 58.889 47.619 0.00 0.00 39.06 4.49
2130 2236 3.120373 GCTAAGCAAAGCAAGACAGAGAC 60.120 47.826 5.51 0.00 42.30 3.36
2134 2240 2.157738 AGGCTAAGCAAAGCAAGACAG 58.842 47.619 11.81 0.00 44.64 3.51
2147 2253 3.553096 CGTGTATGGCTTCCTAGGCTAAG 60.553 52.174 2.96 4.78 46.59 2.18
2205 2311 0.969894 CCTCCAGGAACTTCTCGTGT 59.030 55.000 0.00 0.00 38.10 4.49
2241 2347 1.077285 TATCTGACGCCAGGACCGA 60.077 57.895 0.00 0.00 40.76 4.69
2433 2540 7.116075 ACAGGCCAAATGTATCATAACTACAA 58.884 34.615 5.01 0.00 33.12 2.41
2472 2579 8.951787 ACAAAGATATAACATAAACCGCTGTA 57.048 30.769 0.00 0.00 0.00 2.74
2500 2607 9.672673 AATTCTGCTTCTACAAGTACATGTATT 57.327 29.630 9.18 1.20 35.37 1.89
2528 2638 1.355720 AGGGTTCAAAGTAGCTGCCAT 59.644 47.619 0.00 0.00 0.00 4.40
2538 2648 4.938226 GGTAGACATCTGAAGGGTTCAAAG 59.062 45.833 0.00 0.00 39.58 2.77
2547 2657 5.230942 AGAAAACACGGTAGACATCTGAAG 58.769 41.667 0.00 0.00 0.00 3.02
2550 2660 4.556233 TGAGAAAACACGGTAGACATCTG 58.444 43.478 0.00 0.00 0.00 2.90
2551 2661 4.866508 TGAGAAAACACGGTAGACATCT 57.133 40.909 0.00 0.00 0.00 2.90
2552 2662 4.201724 GCATGAGAAAACACGGTAGACATC 60.202 45.833 0.00 0.00 0.00 3.06
2558 2668 1.434555 CCGCATGAGAAAACACGGTA 58.565 50.000 0.00 0.00 35.99 4.02
2578 2688 1.535028 CACCTGCACGATAAGCAAACA 59.465 47.619 0.00 0.00 42.17 2.83
2581 2691 0.036164 ACCACCTGCACGATAAGCAA 59.964 50.000 0.00 0.00 42.17 3.91
2643 2753 2.062636 AGTGGTTTCCTCTTTGGCCTA 58.937 47.619 3.32 0.00 35.26 3.93
2700 2810 0.388907 CATTTGCTGGGTTTGCTCCG 60.389 55.000 0.00 0.00 0.00 4.63
2739 2849 6.432472 GGTCAGAACCAGAAGAAGATGAAATT 59.568 38.462 0.00 0.00 45.68 1.82
2742 2852 4.899502 GGTCAGAACCAGAAGAAGATGAA 58.100 43.478 0.00 0.00 45.68 2.57
2814 2924 4.201950 GGGTTTGACATCGATGATCCAAAG 60.202 45.833 31.33 2.81 31.68 2.77
2865 2975 7.630005 AGGAACATTATTCTCCTCATCTGAT 57.370 36.000 0.00 0.00 34.31 2.90
2882 2992 1.679944 CGCTGACCATTGGAGGAACAT 60.680 52.381 10.37 0.00 0.00 2.71
2888 2998 1.649664 CTCTTCGCTGACCATTGGAG 58.350 55.000 10.37 0.00 0.00 3.86
2898 3008 1.270305 TGTTGACCTTCCTCTTCGCTG 60.270 52.381 0.00 0.00 0.00 5.18
2900 3010 1.878953 TTGTTGACCTTCCTCTTCGC 58.121 50.000 0.00 0.00 0.00 4.70
2903 3013 3.555966 CCTGTTTGTTGACCTTCCTCTT 58.444 45.455 0.00 0.00 0.00 2.85
2906 3016 1.850345 TCCCTGTTTGTTGACCTTCCT 59.150 47.619 0.00 0.00 0.00 3.36
3008 3118 5.948992 AACAAGAGCAGTCCAATAAGTTC 57.051 39.130 0.00 0.00 0.00 3.01
3112 3222 0.756294 TCTTCCCGAACAGCTTCACA 59.244 50.000 0.00 0.00 0.00 3.58
3222 3332 1.004277 GTGGGGCTTGTGATGTTCCTA 59.996 52.381 0.00 0.00 0.00 2.94
3276 3386 4.943705 TGTTAGAGGATTGTGAGATTTGCC 59.056 41.667 0.00 0.00 0.00 4.52
3409 3519 3.340034 TCCATTTGTACATGTCGGAACC 58.660 45.455 0.00 0.00 0.00 3.62
3410 3520 4.250464 TCTCCATTTGTACATGTCGGAAC 58.750 43.478 0.00 0.00 0.00 3.62
3411 3521 4.503910 CTCTCCATTTGTACATGTCGGAA 58.496 43.478 0.00 0.00 0.00 4.30
3412 3522 3.678806 GCTCTCCATTTGTACATGTCGGA 60.679 47.826 0.00 0.00 0.00 4.55
3413 3523 2.609459 GCTCTCCATTTGTACATGTCGG 59.391 50.000 0.00 0.00 0.00 4.79
3414 3524 3.261580 TGCTCTCCATTTGTACATGTCG 58.738 45.455 0.00 0.00 0.00 4.35
3415 3525 5.627499 TTTGCTCTCCATTTGTACATGTC 57.373 39.130 0.00 0.00 0.00 3.06
3416 3526 5.948162 AGATTTGCTCTCCATTTGTACATGT 59.052 36.000 2.69 2.69 0.00 3.21
3417 3527 6.446781 AGATTTGCTCTCCATTTGTACATG 57.553 37.500 0.00 0.00 0.00 3.21
3418 3528 6.690194 GAGATTTGCTCTCCATTTGTACAT 57.310 37.500 0.00 0.00 44.06 2.29
3430 3540 7.619050 TGTAAGAGAATTCTGAGATTTGCTCT 58.381 34.615 14.00 0.00 44.27 4.09
3431 3541 7.840342 TGTAAGAGAATTCTGAGATTTGCTC 57.160 36.000 14.00 0.00 44.21 4.26
3432 3542 7.336427 CCTTGTAAGAGAATTCTGAGATTTGCT 59.664 37.037 14.00 0.00 32.79 3.91
3433 3543 7.470900 CCTTGTAAGAGAATTCTGAGATTTGC 58.529 38.462 14.00 4.00 32.79 3.68
3434 3544 7.120285 TGCCTTGTAAGAGAATTCTGAGATTTG 59.880 37.037 14.00 0.00 32.79 2.32
3435 3545 7.170965 TGCCTTGTAAGAGAATTCTGAGATTT 58.829 34.615 14.00 2.32 32.79 2.17
3436 3546 6.715280 TGCCTTGTAAGAGAATTCTGAGATT 58.285 36.000 14.00 5.01 32.79 2.40
3437 3547 6.305272 TGCCTTGTAAGAGAATTCTGAGAT 57.695 37.500 14.00 0.00 32.79 2.75
3438 3548 5.745312 TGCCTTGTAAGAGAATTCTGAGA 57.255 39.130 14.00 0.00 32.79 3.27
3439 3549 5.702670 TGTTGCCTTGTAAGAGAATTCTGAG 59.297 40.000 14.00 1.25 32.79 3.35
3440 3550 5.620206 TGTTGCCTTGTAAGAGAATTCTGA 58.380 37.500 14.00 0.00 32.79 3.27
3441 3551 5.947228 TGTTGCCTTGTAAGAGAATTCTG 57.053 39.130 14.00 0.00 32.79 3.02
3442 3552 6.150140 GTGATGTTGCCTTGTAAGAGAATTCT 59.850 38.462 7.95 7.95 34.29 2.40
3443 3553 6.072508 TGTGATGTTGCCTTGTAAGAGAATTC 60.073 38.462 0.00 0.00 0.00 2.17
3444 3554 5.769662 TGTGATGTTGCCTTGTAAGAGAATT 59.230 36.000 0.00 0.00 0.00 2.17
3445 3555 5.316167 TGTGATGTTGCCTTGTAAGAGAAT 58.684 37.500 0.00 0.00 0.00 2.40
3446 3556 4.713553 TGTGATGTTGCCTTGTAAGAGAA 58.286 39.130 0.00 0.00 0.00 2.87
3447 3557 4.350368 TGTGATGTTGCCTTGTAAGAGA 57.650 40.909 0.00 0.00 0.00 3.10
3448 3558 4.614535 GCTTGTGATGTTGCCTTGTAAGAG 60.615 45.833 0.00 0.00 0.00 2.85
3449 3559 3.253188 GCTTGTGATGTTGCCTTGTAAGA 59.747 43.478 0.00 0.00 0.00 2.10
3450 3560 3.568538 GCTTGTGATGTTGCCTTGTAAG 58.431 45.455 0.00 0.00 0.00 2.34
3451 3561 2.295909 GGCTTGTGATGTTGCCTTGTAA 59.704 45.455 0.00 0.00 41.92 2.41
3452 3562 1.885887 GGCTTGTGATGTTGCCTTGTA 59.114 47.619 0.00 0.00 41.92 2.41
3453 3563 0.675633 GGCTTGTGATGTTGCCTTGT 59.324 50.000 0.00 0.00 41.92 3.16
3454 3564 0.037975 GGGCTTGTGATGTTGCCTTG 60.038 55.000 0.00 0.00 44.36 3.61
3455 3565 1.187567 GGGGCTTGTGATGTTGCCTT 61.188 55.000 0.00 0.00 44.36 4.35
3456 3566 1.607467 GGGGCTTGTGATGTTGCCT 60.607 57.895 0.00 0.00 44.36 4.75
3457 3567 1.259840 ATGGGGCTTGTGATGTTGCC 61.260 55.000 0.00 0.00 44.22 4.52
3458 3568 0.609662 AATGGGGCTTGTGATGTTGC 59.390 50.000 0.00 0.00 0.00 4.17
3459 3569 1.066716 CCAATGGGGCTTGTGATGTTG 60.067 52.381 0.00 0.00 0.00 3.33
3460 3570 1.269012 CCAATGGGGCTTGTGATGTT 58.731 50.000 0.00 0.00 0.00 2.71
3461 3571 2.980541 CCAATGGGGCTTGTGATGT 58.019 52.632 0.00 0.00 0.00 3.06
3471 3581 2.173356 TGAATCTCTACAGCCAATGGGG 59.827 50.000 0.00 0.00 40.85 4.96
3472 3582 3.565764 TGAATCTCTACAGCCAATGGG 57.434 47.619 0.00 0.00 37.18 4.00
3473 3583 3.314635 GCTTGAATCTCTACAGCCAATGG 59.685 47.826 0.00 0.00 0.00 3.16
3474 3584 3.943381 TGCTTGAATCTCTACAGCCAATG 59.057 43.478 0.00 0.00 0.00 2.82
3475 3585 4.226427 TGCTTGAATCTCTACAGCCAAT 57.774 40.909 0.00 0.00 0.00 3.16
3476 3586 3.701205 TGCTTGAATCTCTACAGCCAA 57.299 42.857 0.00 0.00 0.00 4.52
3477 3587 3.920231 ATGCTTGAATCTCTACAGCCA 57.080 42.857 0.00 0.00 0.00 4.75
3478 3588 3.738282 CGTATGCTTGAATCTCTACAGCC 59.262 47.826 0.00 0.00 0.00 4.85
3479 3589 3.183373 GCGTATGCTTGAATCTCTACAGC 59.817 47.826 0.00 0.00 38.39 4.40
3480 3590 4.963237 GCGTATGCTTGAATCTCTACAG 57.037 45.455 0.00 0.00 38.39 2.74
3516 3626 4.006989 TGAATTGTATGGAAGAACCCACG 58.993 43.478 0.00 0.00 39.34 4.94
3663 3773 2.736719 GCAGCTTCGCTCTCATCAGTAA 60.737 50.000 0.00 0.00 36.40 2.24
3711 3821 4.556233 CTGAGTATTGTCAACGAAGTCCA 58.444 43.478 0.00 0.00 45.00 4.02
3793 3903 6.811253 TTAAGCTGAAAATTAGAAGCCGAA 57.189 33.333 0.00 0.00 36.28 4.30
3865 3975 2.060383 CCTCACCGGCTCATCTCCA 61.060 63.158 0.00 0.00 0.00 3.86
3890 4000 3.057033 ACTCTACATCTTTTGTACGGCGT 60.057 43.478 19.64 19.64 39.87 5.68
3921 4031 2.130272 GGAAGAAGATCCCCGCTTTT 57.870 50.000 0.00 0.00 33.05 2.27
4000 4110 7.717875 TGTGCAAGTAAAACCTAAGAATACAGT 59.282 33.333 0.00 0.00 0.00 3.55
4001 4111 8.094798 TGTGCAAGTAAAACCTAAGAATACAG 57.905 34.615 0.00 0.00 0.00 2.74
4048 4159 3.427425 CAACGCGCATTTCCCGGA 61.427 61.111 5.73 0.00 0.00 5.14
4118 4229 4.505324 AACCTCCTGCTTTTATCCTACC 57.495 45.455 0.00 0.00 0.00 3.18
4273 4391 5.092554 TCAGACTCTTACCAACACAACAA 57.907 39.130 0.00 0.00 0.00 2.83
4346 4464 2.950309 CCTTCCATGCTCCATTCTGAAG 59.050 50.000 0.00 0.00 0.00 3.02
4353 4472 5.461327 ACAATATTTCCTTCCATGCTCCAT 58.539 37.500 0.00 0.00 0.00 3.41
4357 4476 6.608405 TGATGAACAATATTTCCTTCCATGCT 59.392 34.615 0.00 0.00 0.00 3.79
4358 4477 6.808829 TGATGAACAATATTTCCTTCCATGC 58.191 36.000 0.00 0.00 0.00 4.06
4407 4527 3.010413 GCAGCCATGGCAGGAAACC 62.010 63.158 37.18 13.38 44.88 3.27
4433 4553 3.867493 GGCCCATTACGTACTCTTAACAC 59.133 47.826 0.00 0.00 0.00 3.32
4434 4554 3.770933 AGGCCCATTACGTACTCTTAACA 59.229 43.478 0.00 0.00 0.00 2.41
4435 4555 4.397481 AGGCCCATTACGTACTCTTAAC 57.603 45.455 0.00 0.00 0.00 2.01
4436 4556 6.463331 CCATTAGGCCCATTACGTACTCTTAA 60.463 42.308 0.00 0.00 0.00 1.85
4437 4557 5.011329 CCATTAGGCCCATTACGTACTCTTA 59.989 44.000 0.00 0.00 0.00 2.10
4438 4558 4.202326 CCATTAGGCCCATTACGTACTCTT 60.202 45.833 0.00 0.00 0.00 2.85
4439 4559 3.323979 CCATTAGGCCCATTACGTACTCT 59.676 47.826 0.00 0.00 0.00 3.24
4473 4593 4.141065 ACCCTAAGACTAACGGGCTATACT 60.141 45.833 0.00 0.00 40.45 2.12
4713 4833 3.056821 TGAAGACATGATCGAACCGAAGT 60.057 43.478 0.00 0.00 39.99 3.01
5045 5226 3.449227 CCACGGCAGCTAGGACGA 61.449 66.667 6.27 0.00 43.61 4.20
5208 5482 0.607489 GGTGGATGACAGCTGCTGTT 60.607 55.000 33.33 20.63 45.44 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.