Multiple sequence alignment - TraesCS7A01G551000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G551000 chr7A 100.000 3194 0 0 1 3194 724737515 724734322 0.000000e+00 5899.0
1 TraesCS7A01G551000 chr7A 90.756 119 11 0 3076 3194 711462058 711462176 3.300000e-35 159.0
2 TraesCS7A01G551000 chr7D 92.439 2685 124 29 1 2625 628398981 628401646 0.000000e+00 3760.0
3 TraesCS7A01G551000 chr7D 92.958 355 15 7 2638 2988 550839710 550840058 2.840000e-140 508.0
4 TraesCS7A01G551000 chr7D 94.949 99 4 1 2978 3075 42383240 42383142 1.530000e-33 154.0
5 TraesCS7A01G551000 chr7B 92.196 2204 89 28 466 2625 730555488 730553324 0.000000e+00 3040.0
6 TraesCS7A01G551000 chr7B 92.281 2034 79 26 636 2625 730672729 730670730 0.000000e+00 2815.0
7 TraesCS7A01G551000 chr7B 95.540 1592 59 5 1038 2625 730648770 730647187 0.000000e+00 2536.0
8 TraesCS7A01G551000 chr7B 95.540 1592 58 6 1038 2625 730698508 730696926 0.000000e+00 2534.0
9 TraesCS7A01G551000 chr7B 95.284 1569 61 6 1062 2625 730618236 730616676 0.000000e+00 2475.0
10 TraesCS7A01G551000 chr7B 85.222 406 15 13 637 1022 730698923 730698543 3.010000e-100 375.0
11 TraesCS7A01G551000 chr7B 91.266 229 8 7 801 1022 730649028 730648805 5.180000e-78 302.0
12 TraesCS7A01G551000 chr7B 92.553 94 3 1 376 465 730558036 730557943 7.190000e-27 132.0
13 TraesCS7A01G551000 chr7B 92.553 94 3 1 376 465 730674638 730674545 7.190000e-27 132.0
14 TraesCS7A01G551000 chr7B 92.553 94 3 1 376 465 730701050 730700957 7.190000e-27 132.0
15 TraesCS7A01G551000 chr7B 91.398 93 4 1 376 464 730620707 730620615 1.200000e-24 124.0
16 TraesCS7A01G551000 chr7B 87.302 63 6 2 2970 3030 528087369 528087431 1.590000e-08 71.3
17 TraesCS7A01G551000 chrUn 88.218 993 46 23 472 1424 456475167 456476128 0.000000e+00 1120.0
18 TraesCS7A01G551000 chr6D 80.641 811 127 19 792 1596 441291137 441291923 4.560000e-168 601.0
19 TraesCS7A01G551000 chr6D 79.855 829 136 19 792 1615 441316625 441317427 7.680000e-161 577.0
20 TraesCS7A01G551000 chr6D 92.676 355 21 4 2638 2988 405668707 405669060 1.020000e-139 507.0
21 TraesCS7A01G551000 chr6A 80.172 812 128 21 792 1596 589175113 589175898 7.680000e-161 577.0
22 TraesCS7A01G551000 chr6A 88.542 96 8 2 2978 3072 202299397 202299304 2.600000e-21 113.0
23 TraesCS7A01G551000 chr6A 81.395 86 8 7 2978 3060 592445538 592445618 2.660000e-06 63.9
24 TraesCS7A01G551000 chr4A 93.557 357 15 7 2635 2988 648785451 648785802 2.820000e-145 525.0
25 TraesCS7A01G551000 chr3A 93.277 357 15 7 2637 2988 34039055 34039407 4.720000e-143 518.0
26 TraesCS7A01G551000 chr3A 97.826 46 1 0 2977 3022 489887844 489887889 2.640000e-11 80.5
27 TraesCS7A01G551000 chr2B 93.660 347 14 6 2647 2988 17464245 17463902 2.200000e-141 512.0
28 TraesCS7A01G551000 chr2B 92.898 352 19 5 2640 2988 17168359 17168011 1.020000e-139 507.0
29 TraesCS7A01G551000 chr4D 92.717 357 20 3 2635 2988 484700649 484701002 7.900000e-141 510.0
30 TraesCS7A01G551000 chr2A 92.997 357 14 8 2637 2988 261666080 261665730 7.900000e-141 510.0
31 TraesCS7A01G551000 chr2A 91.150 113 10 0 3082 3194 730105555 730105443 1.530000e-33 154.0
32 TraesCS7A01G551000 chr2A 83.471 121 16 4 2956 3075 280614169 280614286 3.370000e-20 110.0
33 TraesCS7A01G551000 chr2A 100.000 50 0 0 3024 3073 730105648 730105599 3.390000e-15 93.5
34 TraesCS7A01G551000 chr1A 92.958 355 18 5 2637 2988 582217806 582217456 7.900000e-141 510.0
35 TraesCS7A01G551000 chr3D 92.437 119 9 0 3076 3194 22552808 22552690 1.520000e-38 171.0
36 TraesCS7A01G551000 chr3D 93.069 101 5 2 2977 3075 22552945 22552845 2.570000e-31 147.0
37 TraesCS7A01G551000 chr3B 90.756 119 11 0 3076 3194 826147782 826147664 3.300000e-35 159.0
38 TraesCS7A01G551000 chr3B 95.000 80 4 0 2996 3075 826147898 826147819 3.340000e-25 126.0
39 TraesCS7A01G551000 chr1D 88.235 136 10 4 606 741 241468627 241468756 1.190000e-34 158.0
40 TraesCS7A01G551000 chr5B 82.500 80 13 1 2988 3066 620528679 620528600 5.720000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G551000 chr7A 724734322 724737515 3193 True 5899.000000 5899 100.0000 1 3194 1 chr7A.!!$R1 3193
1 TraesCS7A01G551000 chr7D 628398981 628401646 2665 False 3760.000000 3760 92.4390 1 2625 1 chr7D.!!$F2 2624
2 TraesCS7A01G551000 chr7B 730553324 730558036 4712 True 1586.000000 3040 92.3745 376 2625 2 chr7B.!!$R1 2249
3 TraesCS7A01G551000 chr7B 730670730 730674638 3908 True 1473.500000 2815 92.4170 376 2625 2 chr7B.!!$R4 2249
4 TraesCS7A01G551000 chr7B 730647187 730649028 1841 True 1419.000000 2536 93.4030 801 2625 2 chr7B.!!$R3 1824
5 TraesCS7A01G551000 chr7B 730616676 730620707 4031 True 1299.500000 2475 93.3410 376 2625 2 chr7B.!!$R2 2249
6 TraesCS7A01G551000 chr7B 730696926 730701050 4124 True 1013.666667 2534 91.1050 376 2625 3 chr7B.!!$R5 2249
7 TraesCS7A01G551000 chrUn 456475167 456476128 961 False 1120.000000 1120 88.2180 472 1424 1 chrUn.!!$F1 952
8 TraesCS7A01G551000 chr6D 441291137 441291923 786 False 601.000000 601 80.6410 792 1596 1 chr6D.!!$F2 804
9 TraesCS7A01G551000 chr6D 441316625 441317427 802 False 577.000000 577 79.8550 792 1615 1 chr6D.!!$F3 823
10 TraesCS7A01G551000 chr6A 589175113 589175898 785 False 577.000000 577 80.1720 792 1596 1 chr6A.!!$F1 804

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
193 198 0.382158 GTCTCATGACGATCGCCTGA 59.618 55.0 16.6 14.04 33.15 3.86 F
1025 3715 0.178068 ACGACATTCCATTCCTCCGG 59.822 55.0 0.0 0.00 0.00 5.14 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2012 4722 0.305313 GACGAGATCGACGCTAGCTT 59.695 55.0 13.93 2.39 43.02 3.74 R
2868 5584 0.181587 TCGTGGAGCCCTCACAAAAA 59.818 50.0 0.00 0.00 35.03 1.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
72 73 1.895131 AGTATTTTGCAACAGCCCCAG 59.105 47.619 0.00 0.00 0.00 4.45
73 74 1.892474 GTATTTTGCAACAGCCCCAGA 59.108 47.619 0.00 0.00 0.00 3.86
117 122 0.538516 CATCGGGGTTTTGTGTGGGA 60.539 55.000 0.00 0.00 0.00 4.37
137 142 5.163141 TGGGAACTAGAACAGGTTTGATTCA 60.163 40.000 0.00 0.00 0.00 2.57
138 143 5.181433 GGGAACTAGAACAGGTTTGATTCAC 59.819 44.000 0.00 0.00 0.00 3.18
190 195 1.858091 ATTGTCTCATGACGATCGCC 58.142 50.000 16.60 4.24 42.09 5.54
193 198 0.382158 GTCTCATGACGATCGCCTGA 59.618 55.000 16.60 14.04 33.15 3.86
205 210 1.153107 CGCCTGATGAGGAATGCCA 60.153 57.895 0.77 0.00 42.93 4.92
241 246 2.032071 GTCGGACCCCACCAACAG 59.968 66.667 0.00 0.00 0.00 3.16
295 300 5.754782 ACTTTGCCATGTCTGGTATAATCA 58.245 37.500 0.00 0.00 45.10 2.57
310 315 2.238942 AATCAACACAGCTGACGACA 57.761 45.000 23.35 0.89 0.00 4.35
318 323 2.155732 CACAGCTGACGACAACATGTAC 59.844 50.000 23.35 0.00 0.00 2.90
323 328 1.336148 TGACGACAACATGTACGGGTC 60.336 52.381 18.84 15.06 0.00 4.46
380 385 2.409975 CAACGGCCGGTATACAATAGG 58.590 52.381 31.76 2.96 0.00 2.57
578 3069 0.737219 GGCAAGCATGTCTGATGTCC 59.263 55.000 0.00 0.00 0.00 4.02
613 3278 6.499699 TCTGCTTATTATGGGAGATGTGAGAT 59.500 38.462 0.00 0.00 0.00 2.75
617 3282 7.616528 TTATTATGGGAGATGTGAGATGTGA 57.383 36.000 0.00 0.00 0.00 3.58
618 3283 5.541953 TTATGGGAGATGTGAGATGTGAG 57.458 43.478 0.00 0.00 0.00 3.51
619 3284 3.105959 TGGGAGATGTGAGATGTGAGA 57.894 47.619 0.00 0.00 0.00 3.27
620 3285 2.762887 TGGGAGATGTGAGATGTGAGAC 59.237 50.000 0.00 0.00 0.00 3.36
621 3286 2.223688 GGGAGATGTGAGATGTGAGACG 60.224 54.545 0.00 0.00 0.00 4.18
623 3288 3.433709 GAGATGTGAGATGTGAGACGTG 58.566 50.000 0.00 0.00 0.00 4.49
625 3290 1.328279 TGTGAGATGTGAGACGTGGT 58.672 50.000 0.00 0.00 0.00 4.16
626 3291 1.000274 TGTGAGATGTGAGACGTGGTG 60.000 52.381 0.00 0.00 0.00 4.17
627 3292 1.269723 GTGAGATGTGAGACGTGGTGA 59.730 52.381 0.00 0.00 0.00 4.02
628 3293 2.094494 GTGAGATGTGAGACGTGGTGAT 60.094 50.000 0.00 0.00 0.00 3.06
629 3294 2.562738 TGAGATGTGAGACGTGGTGATT 59.437 45.455 0.00 0.00 0.00 2.57
630 3295 3.006859 TGAGATGTGAGACGTGGTGATTT 59.993 43.478 0.00 0.00 0.00 2.17
631 3296 3.329386 AGATGTGAGACGTGGTGATTTG 58.671 45.455 0.00 0.00 0.00 2.32
632 3297 2.613026 TGTGAGACGTGGTGATTTGT 57.387 45.000 0.00 0.00 0.00 2.83
633 3298 2.912771 TGTGAGACGTGGTGATTTGTT 58.087 42.857 0.00 0.00 0.00 2.83
634 3299 3.275143 TGTGAGACGTGGTGATTTGTTT 58.725 40.909 0.00 0.00 0.00 2.83
635 3300 3.692101 TGTGAGACGTGGTGATTTGTTTT 59.308 39.130 0.00 0.00 0.00 2.43
675 3345 6.929606 AGAGAATTATGTACGTGGAAATAGCC 59.070 38.462 0.00 0.00 0.00 3.93
710 3385 2.269241 GGCCGAAGCTAACAGCCT 59.731 61.111 9.84 0.00 43.77 4.58
769 3452 7.492669 TCGTCTCAATATTGGAAAGAATCAGAC 59.507 37.037 15.36 14.48 0.00 3.51
873 3556 1.743394 GGACGCCAAAATTACAGAGGG 59.257 52.381 0.00 0.00 0.00 4.30
908 3591 7.128234 AGGCACCAAATCTTATGCAATATTT 57.872 32.000 0.00 0.00 39.92 1.40
981 3669 4.413760 TCCCTCCACTATAAATCTACCCG 58.586 47.826 0.00 0.00 0.00 5.28
988 3676 4.831155 CACTATAAATCTACCCGTCCTCCA 59.169 45.833 0.00 0.00 0.00 3.86
995 3683 0.469331 TACCCGTCCTCCATGCCTAG 60.469 60.000 0.00 0.00 0.00 3.02
1022 3712 3.119849 CCAACAACGACATTCCATTCCTC 60.120 47.826 0.00 0.00 0.00 3.71
1025 3715 0.178068 ACGACATTCCATTCCTCCGG 59.822 55.000 0.00 0.00 0.00 5.14
1026 3716 1.160329 CGACATTCCATTCCTCCGGC 61.160 60.000 0.00 0.00 0.00 6.13
1027 3717 0.819666 GACATTCCATTCCTCCGGCC 60.820 60.000 0.00 0.00 0.00 6.13
1029 3719 3.120086 ATTCCATTCCTCCGGCCGG 62.120 63.158 39.13 39.13 0.00 6.13
1032 3722 4.794648 CATTCCTCCGGCCGGCAA 62.795 66.667 39.89 29.08 34.68 4.52
1033 3723 4.489771 ATTCCTCCGGCCGGCAAG 62.490 66.667 39.89 30.60 34.68 4.01
1323 4032 1.677637 GGAGGGCTTACTCACCGAGG 61.678 65.000 6.08 0.00 39.27 4.63
1344 4053 1.687146 ATCGCCAAGCTCCAGGAGA 60.687 57.895 21.89 8.31 38.10 3.71
1346 4055 1.003355 CGCCAAGCTCCAGGAGAAA 60.003 57.895 21.89 0.00 0.00 2.52
1504 4213 0.326264 ATCAAGAGCTTGGGCGAACT 59.674 50.000 10.09 0.00 44.37 3.01
1601 4310 1.153369 GCTGTATCAGGCGCCAGAA 60.153 57.895 31.54 14.04 31.21 3.02
1680 4389 2.202878 CCGGCAGTGATACGGTGG 60.203 66.667 11.70 0.00 42.53 4.61
1719 4429 3.771577 ATCTGGAGTTTGGTTCGAGTT 57.228 42.857 0.00 0.00 0.00 3.01
2012 4722 1.002257 ATCGTTGGAGTGCATGGCA 60.002 52.632 0.00 0.00 35.60 4.92
2118 4830 7.615365 ACATTCAGCTATTTCCTGGAATTGTTA 59.385 33.333 10.45 0.00 0.00 2.41
2124 4836 9.512588 AGCTATTTCCTGGAATTGTTATATCTG 57.487 33.333 10.45 0.00 0.00 2.90
2464 5180 0.743097 GCAGGGCCTTTGATGTCATC 59.257 55.000 1.32 5.83 0.00 2.92
2603 5319 4.869861 GTGACAGTTTTTGCTGGATTGTTT 59.130 37.500 0.00 0.00 40.59 2.83
2605 5321 6.019881 GTGACAGTTTTTGCTGGATTGTTTAC 60.020 38.462 0.00 0.00 40.59 2.01
2608 5324 3.717400 TTTTGCTGGATTGTTTACGCA 57.283 38.095 0.00 0.00 0.00 5.24
2625 5341 4.085357 ACGCATGCCTGGATAAAGATTA 57.915 40.909 13.15 0.00 0.00 1.75
2626 5342 4.067896 ACGCATGCCTGGATAAAGATTAG 58.932 43.478 13.15 0.00 0.00 1.73
2627 5343 4.202357 ACGCATGCCTGGATAAAGATTAGA 60.202 41.667 13.15 0.00 0.00 2.10
2628 5344 4.756642 CGCATGCCTGGATAAAGATTAGAA 59.243 41.667 13.15 0.00 0.00 2.10
2629 5345 5.413833 CGCATGCCTGGATAAAGATTAGAAT 59.586 40.000 13.15 0.00 0.00 2.40
2630 5346 6.402983 CGCATGCCTGGATAAAGATTAGAATC 60.403 42.308 13.15 0.00 35.64 2.52
2632 5348 7.826252 GCATGCCTGGATAAAGATTAGAATCTA 59.174 37.037 6.36 0.00 44.67 1.98
2633 5349 9.902684 CATGCCTGGATAAAGATTAGAATCTAT 57.097 33.333 5.22 0.00 44.67 1.98
2653 5369 9.646427 AATCTATTACGAGATAGGATTTTCAGC 57.354 33.333 0.00 0.00 35.01 4.26
2654 5370 8.178313 TCTATTACGAGATAGGATTTTCAGCA 57.822 34.615 0.00 0.00 31.83 4.41
2655 5371 8.082852 TCTATTACGAGATAGGATTTTCAGCAC 58.917 37.037 0.00 0.00 31.83 4.40
2656 5372 3.798202 ACGAGATAGGATTTTCAGCACC 58.202 45.455 0.00 0.00 0.00 5.01
2657 5373 3.134458 CGAGATAGGATTTTCAGCACCC 58.866 50.000 0.00 0.00 0.00 4.61
2658 5374 3.134458 GAGATAGGATTTTCAGCACCCG 58.866 50.000 0.00 0.00 0.00 5.28
2659 5375 2.158755 AGATAGGATTTTCAGCACCCGG 60.159 50.000 0.00 0.00 0.00 5.73
2660 5376 0.254747 TAGGATTTTCAGCACCCGGG 59.745 55.000 22.25 22.25 0.00 5.73
2661 5377 1.304134 GGATTTTCAGCACCCGGGT 60.304 57.895 24.16 24.16 0.00 5.28
2678 5394 2.042762 TGCCCCTGCACCCTCTAT 59.957 61.111 0.00 0.00 44.23 1.98
2679 5395 1.316617 TGCCCCTGCACCCTCTATA 59.683 57.895 0.00 0.00 44.23 1.31
2680 5396 0.327095 TGCCCCTGCACCCTCTATAA 60.327 55.000 0.00 0.00 44.23 0.98
2681 5397 0.843984 GCCCCTGCACCCTCTATAAA 59.156 55.000 0.00 0.00 37.47 1.40
2682 5398 1.477014 GCCCCTGCACCCTCTATAAAC 60.477 57.143 0.00 0.00 37.47 2.01
2683 5399 1.843851 CCCCTGCACCCTCTATAAACA 59.156 52.381 0.00 0.00 0.00 2.83
2684 5400 2.158755 CCCCTGCACCCTCTATAAACAG 60.159 54.545 0.00 0.00 0.00 3.16
2685 5401 2.505819 CCCTGCACCCTCTATAAACAGT 59.494 50.000 0.00 0.00 0.00 3.55
2686 5402 3.709653 CCCTGCACCCTCTATAAACAGTA 59.290 47.826 0.00 0.00 0.00 2.74
2687 5403 4.163458 CCCTGCACCCTCTATAAACAGTAA 59.837 45.833 0.00 0.00 0.00 2.24
2688 5404 5.338871 CCCTGCACCCTCTATAAACAGTAAA 60.339 44.000 0.00 0.00 0.00 2.01
2689 5405 6.357367 CCTGCACCCTCTATAAACAGTAAAT 58.643 40.000 0.00 0.00 0.00 1.40
2690 5406 6.828785 CCTGCACCCTCTATAAACAGTAAATT 59.171 38.462 0.00 0.00 0.00 1.82
2691 5407 7.012421 CCTGCACCCTCTATAAACAGTAAATTC 59.988 40.741 0.00 0.00 0.00 2.17
2692 5408 7.398829 TGCACCCTCTATAAACAGTAAATTCA 58.601 34.615 0.00 0.00 0.00 2.57
2693 5409 7.885922 TGCACCCTCTATAAACAGTAAATTCAA 59.114 33.333 0.00 0.00 0.00 2.69
2694 5410 8.736244 GCACCCTCTATAAACAGTAAATTCAAA 58.264 33.333 0.00 0.00 0.00 2.69
2739 5455 5.376854 AAATCTGAAACTTTGGGACATCG 57.623 39.130 0.00 0.00 39.30 3.84
2740 5456 3.762407 TCTGAAACTTTGGGACATCGA 57.238 42.857 0.00 0.00 39.30 3.59
2741 5457 4.079980 TCTGAAACTTTGGGACATCGAA 57.920 40.909 0.00 0.00 39.30 3.71
2742 5458 3.813166 TCTGAAACTTTGGGACATCGAAC 59.187 43.478 0.00 0.00 39.30 3.95
2743 5459 3.546724 TGAAACTTTGGGACATCGAACA 58.453 40.909 0.00 0.00 39.30 3.18
2744 5460 4.141287 TGAAACTTTGGGACATCGAACAT 58.859 39.130 0.00 0.00 39.30 2.71
2745 5461 4.215399 TGAAACTTTGGGACATCGAACATC 59.785 41.667 0.00 0.00 39.30 3.06
2746 5462 3.417069 ACTTTGGGACATCGAACATCA 57.583 42.857 0.00 0.00 39.30 3.07
2747 5463 3.955471 ACTTTGGGACATCGAACATCAT 58.045 40.909 0.00 0.00 39.30 2.45
2748 5464 3.691118 ACTTTGGGACATCGAACATCATG 59.309 43.478 0.00 0.00 39.30 3.07
2749 5465 3.625649 TTGGGACATCGAACATCATGA 57.374 42.857 0.00 0.00 39.30 3.07
2750 5466 3.625649 TGGGACATCGAACATCATGAA 57.374 42.857 0.00 0.00 0.00 2.57
2751 5467 3.949132 TGGGACATCGAACATCATGAAA 58.051 40.909 0.00 0.00 0.00 2.69
2752 5468 3.689161 TGGGACATCGAACATCATGAAAC 59.311 43.478 0.00 0.00 0.00 2.78
2753 5469 3.941483 GGGACATCGAACATCATGAAACT 59.059 43.478 0.00 0.00 0.00 2.66
2754 5470 4.396166 GGGACATCGAACATCATGAAACTT 59.604 41.667 0.00 0.00 0.00 2.66
2755 5471 5.106157 GGGACATCGAACATCATGAAACTTT 60.106 40.000 0.00 0.00 0.00 2.66
2756 5472 6.381801 GGACATCGAACATCATGAAACTTTT 58.618 36.000 0.00 0.00 0.00 2.27
2757 5473 6.306356 GGACATCGAACATCATGAAACTTTTG 59.694 38.462 0.00 0.00 0.00 2.44
2758 5474 6.969366 ACATCGAACATCATGAAACTTTTGA 58.031 32.000 0.00 0.71 0.00 2.69
2759 5475 7.596494 ACATCGAACATCATGAAACTTTTGAT 58.404 30.769 0.00 3.06 0.00 2.57
2761 5477 7.200778 TCGAACATCATGAAACTTTTGATGA 57.799 32.000 17.52 11.56 46.16 2.92
2763 5479 7.964559 TCGAACATCATGAAACTTTTGATGATC 59.035 33.333 17.52 14.77 44.48 2.92
2764 5480 7.966753 CGAACATCATGAAACTTTTGATGATCT 59.033 33.333 17.52 4.92 44.48 2.75
2765 5481 9.635520 GAACATCATGAAACTTTTGATGATCTT 57.364 29.630 17.52 8.42 44.48 2.40
2766 5482 8.981724 ACATCATGAAACTTTTGATGATCTTG 57.018 30.769 17.52 7.39 44.48 3.02
2767 5483 7.544566 ACATCATGAAACTTTTGATGATCTTGC 59.455 33.333 17.52 0.00 44.48 4.01
2768 5484 6.983984 TCATGAAACTTTTGATGATCTTGCA 58.016 32.000 0.00 0.00 36.18 4.08
2769 5485 7.435305 TCATGAAACTTTTGATGATCTTGCAA 58.565 30.769 0.00 0.00 36.18 4.08
2770 5486 7.927092 TCATGAAACTTTTGATGATCTTGCAAA 59.073 29.630 0.00 0.00 36.18 3.68
2771 5487 8.221100 CATGAAACTTTTGATGATCTTGCAAAG 58.779 33.333 0.00 1.54 38.40 2.77
2772 5488 7.267128 TGAAACTTTTGATGATCTTGCAAAGT 58.733 30.769 0.00 2.14 46.34 2.66
2773 5489 7.765360 TGAAACTTTTGATGATCTTGCAAAGTT 59.235 29.630 15.31 15.31 46.34 2.66
2774 5490 8.496707 AAACTTTTGATGATCTTGCAAAGTTT 57.503 26.923 21.05 21.05 46.34 2.66
2775 5491 8.496707 AACTTTTGATGATCTTGCAAAGTTTT 57.503 26.923 15.31 6.88 46.34 2.43
2776 5492 9.598517 AACTTTTGATGATCTTGCAAAGTTTTA 57.401 25.926 15.31 0.00 46.34 1.52
2777 5493 9.252962 ACTTTTGATGATCTTGCAAAGTTTTAG 57.747 29.630 0.00 0.00 46.34 1.85
2778 5494 7.642071 TTTGATGATCTTGCAAAGTTTTAGC 57.358 32.000 0.00 0.00 46.34 3.09
2779 5495 6.579666 TGATGATCTTGCAAAGTTTTAGCT 57.420 33.333 0.00 0.00 46.34 3.32
2780 5496 7.686438 TGATGATCTTGCAAAGTTTTAGCTA 57.314 32.000 0.00 0.00 46.34 3.32
2781 5497 8.109705 TGATGATCTTGCAAAGTTTTAGCTAA 57.890 30.769 0.86 0.86 46.34 3.09
2782 5498 8.575589 TGATGATCTTGCAAAGTTTTAGCTAAA 58.424 29.630 14.96 14.96 46.34 1.85
2783 5499 9.410556 GATGATCTTGCAAAGTTTTAGCTAAAA 57.589 29.630 24.42 24.42 46.34 1.52
2784 5500 9.762933 ATGATCTTGCAAAGTTTTAGCTAAAAA 57.237 25.926 28.54 12.79 46.34 1.94
2785 5501 9.762933 TGATCTTGCAAAGTTTTAGCTAAAAAT 57.237 25.926 28.54 25.54 46.34 1.82
2799 5515 9.769093 TTTAGCTAAAAATAACATTCGAAGAGC 57.231 29.630 16.53 0.03 38.43 4.09
2800 5516 7.377766 AGCTAAAAATAACATTCGAAGAGCA 57.622 32.000 3.35 0.00 38.43 4.26
2801 5517 7.244192 AGCTAAAAATAACATTCGAAGAGCAC 58.756 34.615 3.35 0.00 38.43 4.40
2802 5518 7.119846 AGCTAAAAATAACATTCGAAGAGCACT 59.880 33.333 3.35 0.00 38.43 4.40
2803 5519 7.426743 GCTAAAAATAACATTCGAAGAGCACTC 59.573 37.037 3.35 0.00 38.43 3.51
2804 5520 6.801539 AAAATAACATTCGAAGAGCACTCA 57.198 33.333 3.35 0.00 38.43 3.41
2805 5521 6.801539 AAATAACATTCGAAGAGCACTCAA 57.198 33.333 3.35 0.00 38.43 3.02
2806 5522 6.801539 AATAACATTCGAAGAGCACTCAAA 57.198 33.333 3.35 0.00 38.43 2.69
2807 5523 6.992063 ATAACATTCGAAGAGCACTCAAAT 57.008 33.333 3.35 0.00 38.43 2.32
2808 5524 8.492673 AATAACATTCGAAGAGCACTCAAATA 57.507 30.769 3.35 0.00 38.43 1.40
2809 5525 6.801539 AACATTCGAAGAGCACTCAAATAA 57.198 33.333 3.35 0.00 38.43 1.40
2810 5526 6.801539 ACATTCGAAGAGCACTCAAATAAA 57.198 33.333 3.35 0.00 38.43 1.40
2811 5527 7.202016 ACATTCGAAGAGCACTCAAATAAAA 57.798 32.000 3.35 0.00 38.43 1.52
2812 5528 7.648142 ACATTCGAAGAGCACTCAAATAAAAA 58.352 30.769 3.35 0.00 38.43 1.94
2886 5602 2.714259 TTTTTGTGAGGGCTCCACG 58.286 52.632 1.49 0.00 37.34 4.94
2887 5603 0.181587 TTTTTGTGAGGGCTCCACGA 59.818 50.000 0.00 0.00 37.34 4.35
2888 5604 0.181587 TTTTGTGAGGGCTCCACGAA 59.818 50.000 4.31 4.31 37.34 3.85
2889 5605 0.250295 TTTGTGAGGGCTCCACGAAG 60.250 55.000 4.31 0.00 37.34 3.79
2890 5606 2.111999 TTGTGAGGGCTCCACGAAGG 62.112 60.000 0.00 0.00 37.34 3.46
2891 5607 2.203788 TGAGGGCTCCACGAAGGT 60.204 61.111 0.00 0.00 39.02 3.50
2892 5608 1.841556 TGAGGGCTCCACGAAGGTT 60.842 57.895 0.00 0.00 39.02 3.50
2893 5609 0.543410 TGAGGGCTCCACGAAGGTTA 60.543 55.000 0.00 0.00 39.02 2.85
2894 5610 0.831307 GAGGGCTCCACGAAGGTTAT 59.169 55.000 0.00 0.00 39.02 1.89
2895 5611 1.209747 GAGGGCTCCACGAAGGTTATT 59.790 52.381 0.00 0.00 39.02 1.40
2896 5612 1.633945 AGGGCTCCACGAAGGTTATTT 59.366 47.619 0.00 0.00 39.02 1.40
2897 5613 1.743394 GGGCTCCACGAAGGTTATTTG 59.257 52.381 0.00 0.00 39.02 2.32
2898 5614 2.433436 GGCTCCACGAAGGTTATTTGT 58.567 47.619 0.00 0.00 39.02 2.83
2899 5615 2.817844 GGCTCCACGAAGGTTATTTGTT 59.182 45.455 0.00 0.00 39.02 2.83
2900 5616 3.365969 GGCTCCACGAAGGTTATTTGTTG 60.366 47.826 0.00 0.00 39.02 3.33
2901 5617 3.821841 CTCCACGAAGGTTATTTGTTGC 58.178 45.455 0.00 0.00 39.02 4.17
2902 5618 3.482436 TCCACGAAGGTTATTTGTTGCT 58.518 40.909 0.00 0.00 39.02 3.91
2903 5619 3.252215 TCCACGAAGGTTATTTGTTGCTG 59.748 43.478 0.00 0.00 39.02 4.41
2904 5620 3.252215 CCACGAAGGTTATTTGTTGCTGA 59.748 43.478 0.00 0.00 0.00 4.26
2905 5621 4.261405 CCACGAAGGTTATTTGTTGCTGAA 60.261 41.667 0.00 0.00 0.00 3.02
2906 5622 5.277825 CACGAAGGTTATTTGTTGCTGAAA 58.722 37.500 0.00 0.00 0.00 2.69
2907 5623 5.173131 CACGAAGGTTATTTGTTGCTGAAAC 59.827 40.000 0.00 0.00 39.41 2.78
2908 5624 5.067283 ACGAAGGTTATTTGTTGCTGAAACT 59.933 36.000 0.00 0.00 39.70 2.66
2909 5625 5.977129 CGAAGGTTATTTGTTGCTGAAACTT 59.023 36.000 0.00 0.00 39.70 2.66
2910 5626 6.475402 CGAAGGTTATTTGTTGCTGAAACTTT 59.525 34.615 0.00 0.00 39.70 2.66
2911 5627 7.515059 CGAAGGTTATTTGTTGCTGAAACTTTG 60.515 37.037 0.00 0.00 39.70 2.77
2912 5628 5.523552 AGGTTATTTGTTGCTGAAACTTTGC 59.476 36.000 0.00 0.00 39.70 3.68
2913 5629 5.293079 GGTTATTTGTTGCTGAAACTTTGCA 59.707 36.000 0.00 0.00 39.70 4.08
2914 5630 6.413269 GTTATTTGTTGCTGAAACTTTGCAG 58.587 36.000 0.00 0.00 39.70 4.41
2915 5631 2.582728 TGTTGCTGAAACTTTGCAGG 57.417 45.000 0.00 0.00 39.70 4.85
2916 5632 2.098614 TGTTGCTGAAACTTTGCAGGA 58.901 42.857 0.00 0.00 39.70 3.86
2917 5633 2.495270 TGTTGCTGAAACTTTGCAGGAA 59.505 40.909 0.00 0.00 39.61 3.36
2918 5634 3.132646 TGTTGCTGAAACTTTGCAGGAAT 59.867 39.130 7.13 0.00 42.87 3.01
2919 5635 3.648339 TGCTGAAACTTTGCAGGAATC 57.352 42.857 0.00 0.00 32.83 2.52
2920 5636 2.957680 TGCTGAAACTTTGCAGGAATCA 59.042 40.909 0.00 0.00 32.83 2.57
2921 5637 3.384146 TGCTGAAACTTTGCAGGAATCAA 59.616 39.130 0.00 0.00 32.83 2.57
2922 5638 4.141981 TGCTGAAACTTTGCAGGAATCAAA 60.142 37.500 0.00 0.00 32.83 2.69
2923 5639 4.209911 GCTGAAACTTTGCAGGAATCAAAC 59.790 41.667 0.00 0.00 32.83 2.93
2924 5640 4.692228 TGAAACTTTGCAGGAATCAAACC 58.308 39.130 0.00 0.00 31.05 3.27
2925 5641 4.405358 TGAAACTTTGCAGGAATCAAACCT 59.595 37.500 0.00 0.00 38.40 3.50
2926 5642 5.104982 TGAAACTTTGCAGGAATCAAACCTT 60.105 36.000 0.00 0.00 35.35 3.50
2927 5643 5.357742 AACTTTGCAGGAATCAAACCTTT 57.642 34.783 0.00 0.00 35.35 3.11
2928 5644 4.696455 ACTTTGCAGGAATCAAACCTTTG 58.304 39.130 0.00 0.00 39.48 2.77
2943 5659 8.066612 TCAAACCTTTGATAATCTTTGATCCC 57.933 34.615 0.00 0.00 41.88 3.85
2944 5660 7.895429 TCAAACCTTTGATAATCTTTGATCCCT 59.105 33.333 0.00 0.00 41.88 4.20
2945 5661 7.651027 AACCTTTGATAATCTTTGATCCCTG 57.349 36.000 0.00 0.00 0.00 4.45
2946 5662 6.973642 ACCTTTGATAATCTTTGATCCCTGA 58.026 36.000 0.00 0.00 0.00 3.86
2947 5663 7.413446 ACCTTTGATAATCTTTGATCCCTGAA 58.587 34.615 0.00 0.00 0.00 3.02
2948 5664 7.895429 ACCTTTGATAATCTTTGATCCCTGAAA 59.105 33.333 0.00 0.00 0.00 2.69
2949 5665 8.411683 CCTTTGATAATCTTTGATCCCTGAAAG 58.588 37.037 0.00 0.00 0.00 2.62
2950 5666 8.884124 TTTGATAATCTTTGATCCCTGAAAGT 57.116 30.769 3.88 0.00 32.11 2.66
2951 5667 8.884124 TTGATAATCTTTGATCCCTGAAAGTT 57.116 30.769 3.88 1.94 32.11 2.66
2952 5668 8.884124 TGATAATCTTTGATCCCTGAAAGTTT 57.116 30.769 3.88 0.00 32.11 2.66
2953 5669 8.960591 TGATAATCTTTGATCCCTGAAAGTTTC 58.039 33.333 8.75 8.75 32.11 2.78
2954 5670 8.884124 ATAATCTTTGATCCCTGAAAGTTTCA 57.116 30.769 17.16 17.16 38.17 2.69
3010 5726 2.942545 CAAATATGCCCGTGCGTTG 58.057 52.632 0.00 0.00 41.78 4.10
3011 5727 1.138671 AAATATGCCCGTGCGTTGC 59.861 52.632 0.00 0.00 41.78 4.17
3012 5728 1.590610 AAATATGCCCGTGCGTTGCA 61.591 50.000 8.11 8.11 41.78 4.08
3013 5729 1.590610 AATATGCCCGTGCGTTGCAA 61.591 50.000 0.00 0.00 41.47 4.08
3014 5730 2.265073 ATATGCCCGTGCGTTGCAAC 62.265 55.000 19.89 19.89 41.47 4.17
3025 5741 3.978460 GTTGCAACGGGGAAACAAT 57.022 47.368 14.90 0.00 0.00 2.71
3026 5742 2.232756 GTTGCAACGGGGAAACAATT 57.767 45.000 14.90 0.00 0.00 2.32
3027 5743 2.556257 GTTGCAACGGGGAAACAATTT 58.444 42.857 14.90 0.00 0.00 1.82
3028 5744 3.718815 GTTGCAACGGGGAAACAATTTA 58.281 40.909 14.90 0.00 0.00 1.40
3029 5745 4.311606 GTTGCAACGGGGAAACAATTTAT 58.688 39.130 14.90 0.00 0.00 1.40
3030 5746 4.181309 TGCAACGGGGAAACAATTTATC 57.819 40.909 0.00 0.00 0.00 1.75
3031 5747 3.829601 TGCAACGGGGAAACAATTTATCT 59.170 39.130 0.00 0.00 0.00 1.98
3032 5748 4.282195 TGCAACGGGGAAACAATTTATCTT 59.718 37.500 0.00 0.00 0.00 2.40
3033 5749 4.625311 GCAACGGGGAAACAATTTATCTTG 59.375 41.667 0.00 0.00 0.00 3.02
3034 5750 4.450082 ACGGGGAAACAATTTATCTTGC 57.550 40.909 0.00 0.00 0.00 4.01
3035 5751 3.194755 ACGGGGAAACAATTTATCTTGCC 59.805 43.478 0.00 0.00 0.00 4.52
3036 5752 3.447229 CGGGGAAACAATTTATCTTGCCT 59.553 43.478 0.00 0.00 30.60 4.75
3037 5753 4.440112 CGGGGAAACAATTTATCTTGCCTC 60.440 45.833 0.00 0.00 30.60 4.70
3038 5754 4.711846 GGGGAAACAATTTATCTTGCCTCT 59.288 41.667 0.00 0.00 30.60 3.69
3039 5755 5.187772 GGGGAAACAATTTATCTTGCCTCTT 59.812 40.000 0.00 0.00 30.60 2.85
3040 5756 6.101997 GGGAAACAATTTATCTTGCCTCTTG 58.898 40.000 0.00 0.00 0.00 3.02
3041 5757 5.578336 GGAAACAATTTATCTTGCCTCTTGC 59.422 40.000 0.00 0.00 41.77 4.01
3054 5770 4.637483 GCCTCTTGCACAATAAGCATAA 57.363 40.909 0.00 0.00 42.33 1.90
3055 5771 4.354587 GCCTCTTGCACAATAAGCATAAC 58.645 43.478 0.00 0.00 42.33 1.89
3056 5772 4.096984 GCCTCTTGCACAATAAGCATAACT 59.903 41.667 0.00 0.00 42.33 2.24
3057 5773 5.731686 GCCTCTTGCACAATAAGCATAACTC 60.732 44.000 0.00 0.00 42.33 3.01
3058 5774 5.355071 CCTCTTGCACAATAAGCATAACTCA 59.645 40.000 0.00 0.00 42.33 3.41
3059 5775 6.127925 CCTCTTGCACAATAAGCATAACTCAA 60.128 38.462 0.00 0.00 42.33 3.02
3060 5776 7.213216 TCTTGCACAATAAGCATAACTCAAA 57.787 32.000 0.00 0.00 42.33 2.69
3061 5777 7.656412 TCTTGCACAATAAGCATAACTCAAAA 58.344 30.769 0.00 0.00 42.33 2.44
3062 5778 7.594758 TCTTGCACAATAAGCATAACTCAAAAC 59.405 33.333 0.00 0.00 42.33 2.43
3063 5779 6.980593 TGCACAATAAGCATAACTCAAAACT 58.019 32.000 0.00 0.00 37.02 2.66
3064 5780 7.083858 TGCACAATAAGCATAACTCAAAACTC 58.916 34.615 0.00 0.00 37.02 3.01
3065 5781 7.040478 TGCACAATAAGCATAACTCAAAACTCT 60.040 33.333 0.00 0.00 37.02 3.24
3066 5782 7.483059 GCACAATAAGCATAACTCAAAACTCTC 59.517 37.037 0.00 0.00 0.00 3.20
3067 5783 8.506437 CACAATAAGCATAACTCAAAACTCTCA 58.494 33.333 0.00 0.00 0.00 3.27
3068 5784 9.066892 ACAATAAGCATAACTCAAAACTCTCAA 57.933 29.630 0.00 0.00 0.00 3.02
3069 5785 9.334693 CAATAAGCATAACTCAAAACTCTCAAC 57.665 33.333 0.00 0.00 0.00 3.18
3070 5786 6.942532 AAGCATAACTCAAAACTCTCAACA 57.057 33.333 0.00 0.00 0.00 3.33
3071 5787 6.551385 AGCATAACTCAAAACTCTCAACAG 57.449 37.500 0.00 0.00 0.00 3.16
3072 5788 5.471456 AGCATAACTCAAAACTCTCAACAGG 59.529 40.000 0.00 0.00 0.00 4.00
3073 5789 5.239525 GCATAACTCAAAACTCTCAACAGGT 59.760 40.000 0.00 0.00 0.00 4.00
3074 5790 6.566753 GCATAACTCAAAACTCTCAACAGGTC 60.567 42.308 0.00 0.00 0.00 3.85
3075 5791 4.762289 ACTCAAAACTCTCAACAGGTCT 57.238 40.909 0.00 0.00 0.00 3.85
3076 5792 4.446371 ACTCAAAACTCTCAACAGGTCTG 58.554 43.478 0.00 0.00 0.00 3.51
3077 5793 3.206150 TCAAAACTCTCAACAGGTCTGC 58.794 45.455 0.00 0.00 0.00 4.26
3078 5794 2.262423 AAACTCTCAACAGGTCTGCC 57.738 50.000 0.00 0.00 0.00 4.85
3080 5796 2.310779 ACTCTCAACAGGTCTGCCTA 57.689 50.000 0.00 0.00 44.97 3.93
3081 5797 2.826488 ACTCTCAACAGGTCTGCCTAT 58.174 47.619 0.00 0.00 44.97 2.57
3082 5798 2.763448 ACTCTCAACAGGTCTGCCTATC 59.237 50.000 0.00 0.00 44.97 2.08
3083 5799 2.102252 CTCTCAACAGGTCTGCCTATCC 59.898 54.545 0.00 0.00 44.97 2.59
3084 5800 2.114616 CTCAACAGGTCTGCCTATCCT 58.885 52.381 0.00 0.00 44.97 3.24
3085 5801 2.102252 CTCAACAGGTCTGCCTATCCTC 59.898 54.545 0.00 0.00 44.97 3.71
3086 5802 1.139853 CAACAGGTCTGCCTATCCTCC 59.860 57.143 0.00 0.00 44.97 4.30
3087 5803 0.639392 ACAGGTCTGCCTATCCTCCT 59.361 55.000 0.00 0.00 44.97 3.69
3088 5804 1.008938 ACAGGTCTGCCTATCCTCCTT 59.991 52.381 0.00 0.00 44.97 3.36
3089 5805 1.415659 CAGGTCTGCCTATCCTCCTTG 59.584 57.143 0.00 0.00 44.97 3.61
3090 5806 0.107643 GGTCTGCCTATCCTCCTTGC 59.892 60.000 0.00 0.00 0.00 4.01
3091 5807 0.107643 GTCTGCCTATCCTCCTTGCC 59.892 60.000 0.00 0.00 0.00 4.52
3092 5808 0.326522 TCTGCCTATCCTCCTTGCCA 60.327 55.000 0.00 0.00 0.00 4.92
3093 5809 0.179034 CTGCCTATCCTCCTTGCCAC 60.179 60.000 0.00 0.00 0.00 5.01
3094 5810 1.149401 GCCTATCCTCCTTGCCACC 59.851 63.158 0.00 0.00 0.00 4.61
3095 5811 1.839894 CCTATCCTCCTTGCCACCC 59.160 63.158 0.00 0.00 0.00 4.61
3096 5812 0.695803 CCTATCCTCCTTGCCACCCT 60.696 60.000 0.00 0.00 0.00 4.34
3097 5813 0.761802 CTATCCTCCTTGCCACCCTC 59.238 60.000 0.00 0.00 0.00 4.30
3098 5814 0.044092 TATCCTCCTTGCCACCCTCA 59.956 55.000 0.00 0.00 0.00 3.86
3099 5815 1.566298 ATCCTCCTTGCCACCCTCAC 61.566 60.000 0.00 0.00 0.00 3.51
3100 5816 2.352805 CTCCTTGCCACCCTCACC 59.647 66.667 0.00 0.00 0.00 4.02
3101 5817 3.612247 CTCCTTGCCACCCTCACCG 62.612 68.421 0.00 0.00 0.00 4.94
3102 5818 3.636231 CCTTGCCACCCTCACCGA 61.636 66.667 0.00 0.00 0.00 4.69
3103 5819 2.358737 CTTGCCACCCTCACCGAC 60.359 66.667 0.00 0.00 0.00 4.79
3104 5820 4.308458 TTGCCACCCTCACCGACG 62.308 66.667 0.00 0.00 0.00 5.12
3106 5822 3.771160 GCCACCCTCACCGACGAT 61.771 66.667 0.00 0.00 0.00 3.73
3107 5823 2.184322 CCACCCTCACCGACGATG 59.816 66.667 0.00 0.00 0.00 3.84
3108 5824 2.348104 CCACCCTCACCGACGATGA 61.348 63.158 0.00 0.00 0.00 2.92
3109 5825 1.676678 CCACCCTCACCGACGATGAT 61.677 60.000 0.00 0.00 0.00 2.45
3110 5826 1.029681 CACCCTCACCGACGATGATA 58.970 55.000 0.00 0.00 0.00 2.15
3111 5827 1.001268 CACCCTCACCGACGATGATAG 60.001 57.143 0.00 0.00 0.00 2.08
3112 5828 0.039074 CCCTCACCGACGATGATAGC 60.039 60.000 0.00 0.00 0.00 2.97
3113 5829 0.386100 CCTCACCGACGATGATAGCG 60.386 60.000 0.00 0.00 0.00 4.26
3116 5832 4.228451 CCGACGATGATAGCGGTG 57.772 61.111 0.00 0.00 38.99 4.94
3117 5833 1.359117 CCGACGATGATAGCGGTGT 59.641 57.895 0.00 0.00 38.99 4.16
3118 5834 0.248907 CCGACGATGATAGCGGTGTT 60.249 55.000 0.00 0.00 38.99 3.32
3119 5835 1.121240 CGACGATGATAGCGGTGTTC 58.879 55.000 0.00 0.00 0.00 3.18
3120 5836 1.121240 GACGATGATAGCGGTGTTCG 58.879 55.000 0.00 0.00 42.76 3.95
3132 5848 3.731136 TGTTCGCCTGAGCACAAC 58.269 55.556 0.00 0.00 39.83 3.32
3133 5849 2.243957 TGTTCGCCTGAGCACAACG 61.244 57.895 0.66 0.66 39.83 4.10
3134 5850 3.345808 TTCGCCTGAGCACAACGC 61.346 61.111 2.04 0.00 39.83 4.84
3143 5859 2.357034 GCACAACGCTCCCGAAGA 60.357 61.111 0.00 0.00 37.77 2.87
3144 5860 1.741770 GCACAACGCTCCCGAAGAT 60.742 57.895 0.00 0.00 37.77 2.40
3145 5861 1.970917 GCACAACGCTCCCGAAGATG 61.971 60.000 0.00 0.00 37.77 2.90
3146 5862 0.389817 CACAACGCTCCCGAAGATGA 60.390 55.000 0.00 0.00 38.29 2.92
3147 5863 0.537188 ACAACGCTCCCGAAGATGAT 59.463 50.000 0.00 0.00 38.29 2.45
3148 5864 1.212616 CAACGCTCCCGAAGATGATC 58.787 55.000 0.00 0.00 38.29 2.92
3149 5865 0.824109 AACGCTCCCGAAGATGATCA 59.176 50.000 0.00 0.00 38.29 2.92
3150 5866 0.824109 ACGCTCCCGAAGATGATCAA 59.176 50.000 0.00 0.00 38.29 2.57
3151 5867 1.414181 ACGCTCCCGAAGATGATCAAT 59.586 47.619 0.00 0.00 38.29 2.57
3152 5868 2.064762 CGCTCCCGAAGATGATCAATC 58.935 52.381 0.00 0.00 36.29 2.67
3153 5869 2.421619 GCTCCCGAAGATGATCAATCC 58.578 52.381 0.00 0.00 35.72 3.01
3154 5870 2.873649 GCTCCCGAAGATGATCAATCCC 60.874 54.545 0.00 0.00 35.72 3.85
3155 5871 2.369860 CTCCCGAAGATGATCAATCCCA 59.630 50.000 0.00 0.00 35.72 4.37
3156 5872 2.104792 TCCCGAAGATGATCAATCCCAC 59.895 50.000 0.00 0.00 35.72 4.61
3157 5873 2.138320 CCGAAGATGATCAATCCCACG 58.862 52.381 0.00 1.67 35.72 4.94
3158 5874 1.528586 CGAAGATGATCAATCCCACGC 59.471 52.381 0.00 0.00 35.72 5.34
3159 5875 1.876156 GAAGATGATCAATCCCACGCC 59.124 52.381 0.00 0.00 35.72 5.68
3160 5876 0.839277 AGATGATCAATCCCACGCCA 59.161 50.000 0.00 0.00 35.72 5.69
3161 5877 1.212688 AGATGATCAATCCCACGCCAA 59.787 47.619 0.00 0.00 35.72 4.52
3162 5878 2.158564 AGATGATCAATCCCACGCCAAT 60.159 45.455 0.00 0.00 35.72 3.16
3163 5879 1.391577 TGATCAATCCCACGCCAATG 58.608 50.000 0.00 0.00 0.00 2.82
3164 5880 1.064832 TGATCAATCCCACGCCAATGA 60.065 47.619 0.00 0.00 0.00 2.57
3165 5881 1.605710 GATCAATCCCACGCCAATGAG 59.394 52.381 0.00 0.00 0.00 2.90
3166 5882 0.327924 TCAATCCCACGCCAATGAGT 59.672 50.000 0.00 0.00 0.00 3.41
3167 5883 1.176527 CAATCCCACGCCAATGAGTT 58.823 50.000 0.00 0.00 0.00 3.01
3168 5884 1.133025 CAATCCCACGCCAATGAGTTC 59.867 52.381 0.00 0.00 0.00 3.01
3169 5885 0.744414 ATCCCACGCCAATGAGTTCG 60.744 55.000 0.00 0.00 0.00 3.95
3170 5886 2.480555 CCACGCCAATGAGTTCGC 59.519 61.111 0.00 0.00 0.00 4.70
3171 5887 2.480555 CACGCCAATGAGTTCGCC 59.519 61.111 0.00 0.00 0.00 5.54
3172 5888 2.031919 ACGCCAATGAGTTCGCCA 59.968 55.556 0.00 0.00 0.00 5.69
3173 5889 2.325082 ACGCCAATGAGTTCGCCAC 61.325 57.895 0.00 0.00 0.00 5.01
3174 5890 2.877691 GCCAATGAGTTCGCCACC 59.122 61.111 0.00 0.00 0.00 4.61
3175 5891 3.039202 GCCAATGAGTTCGCCACCG 62.039 63.158 0.00 0.00 0.00 4.94
3176 5892 2.480555 CAATGAGTTCGCCACCGC 59.519 61.111 0.00 0.00 0.00 5.68
3177 5893 2.031919 AATGAGTTCGCCACCGCA 59.968 55.556 0.00 0.00 34.03 5.69
3178 5894 1.377202 AATGAGTTCGCCACCGCAT 60.377 52.632 0.00 0.00 34.03 4.73
3179 5895 1.647545 AATGAGTTCGCCACCGCATG 61.648 55.000 0.00 0.00 34.03 4.06
3180 5896 2.742372 GAGTTCGCCACCGCATGT 60.742 61.111 0.00 0.00 34.03 3.21
3181 5897 2.740714 GAGTTCGCCACCGCATGTC 61.741 63.158 0.00 0.00 34.03 3.06
3182 5898 4.147322 GTTCGCCACCGCATGTCG 62.147 66.667 0.00 0.00 38.08 4.35
3189 5905 4.329545 ACCGCATGTCGCACCCTT 62.330 61.111 0.00 0.00 42.60 3.95
3190 5906 3.499737 CCGCATGTCGCACCCTTC 61.500 66.667 0.00 0.00 42.60 3.46
3191 5907 2.741985 CGCATGTCGCACCCTTCA 60.742 61.111 0.00 0.00 42.60 3.02
3192 5908 2.108514 CGCATGTCGCACCCTTCAT 61.109 57.895 0.00 0.00 42.60 2.57
3193 5909 1.647545 CGCATGTCGCACCCTTCATT 61.648 55.000 0.00 0.00 42.60 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
72 73 6.484643 TGGCTTCTAATCAACATAGCTGATTC 59.515 38.462 0.00 0.00 41.50 2.52
73 74 6.261826 GTGGCTTCTAATCAACATAGCTGATT 59.738 38.462 0.00 0.00 43.99 2.57
117 122 6.591935 TCAGTGAATCAAACCTGTTCTAGTT 58.408 36.000 0.00 0.00 0.00 2.24
137 142 0.107945 GCTTCATCGAGGGCTTCAGT 60.108 55.000 0.00 0.00 0.00 3.41
138 143 1.150567 CGCTTCATCGAGGGCTTCAG 61.151 60.000 0.00 0.00 0.00 3.02
190 195 1.938577 CTCGTTGGCATTCCTCATCAG 59.061 52.381 0.00 0.00 0.00 2.90
193 198 1.091771 CGCTCGTTGGCATTCCTCAT 61.092 55.000 0.00 0.00 0.00 2.90
205 210 1.522355 ATGCATGCTAGCGCTCGTT 60.522 52.632 16.34 0.00 37.31 3.85
220 225 3.561120 TTGGTGGGGTCCGACATGC 62.561 63.158 0.00 0.00 0.00 4.06
241 246 1.671379 GAACCCGACTTGTGAGCCC 60.671 63.158 0.00 0.00 0.00 5.19
286 291 4.267928 GTCGTCAGCTGTGTTGATTATACC 59.732 45.833 14.67 0.00 0.00 2.73
287 292 4.862574 TGTCGTCAGCTGTGTTGATTATAC 59.137 41.667 14.67 0.00 0.00 1.47
288 293 5.066968 TGTCGTCAGCTGTGTTGATTATA 57.933 39.130 14.67 0.00 0.00 0.98
295 300 1.599071 CATGTTGTCGTCAGCTGTGTT 59.401 47.619 14.67 0.00 0.00 3.32
310 315 1.002773 GAAGGTGGACCCGTACATGTT 59.997 52.381 2.30 0.00 38.74 2.71
318 323 0.107654 GGAAGATGAAGGTGGACCCG 60.108 60.000 0.00 0.00 38.74 5.28
323 328 0.460284 CGACCGGAAGATGAAGGTGG 60.460 60.000 9.46 0.00 37.07 4.61
380 385 7.059945 CGATGCTTCTTTGTTTCTAACATGTTC 59.940 37.037 15.85 0.34 41.79 3.18
578 3069 4.263068 CCATAATAAGCAGAGTAGGTGGGG 60.263 50.000 0.00 0.00 0.00 4.96
613 3278 2.613026 ACAAATCACCACGTCTCACA 57.387 45.000 0.00 0.00 0.00 3.58
639 3304 8.642020 ACGTACATAATTCTCTCGTGTAAAAAC 58.358 33.333 0.00 0.00 0.00 2.43
675 3345 0.671781 CCTCTCGTCCCAAACTGCTG 60.672 60.000 0.00 0.00 0.00 4.41
710 3385 5.116377 GCGTTGATTTTCTTTTACATCGCAA 59.884 36.000 0.00 0.00 43.89 4.85
769 3452 2.095919 GGGAAACACTTTCAATCCGTCG 60.096 50.000 0.00 0.00 41.43 5.12
841 3524 4.739587 TTTGGCGTCCTTTTAAACCTTT 57.260 36.364 0.00 0.00 0.00 3.11
873 3556 0.972883 TTGGTGCCTTAATTGTGCCC 59.027 50.000 0.00 0.00 0.00 5.36
908 3591 5.745312 ATGATATGGCGACAGATAGGAAA 57.255 39.130 0.00 0.00 43.66 3.13
947 3634 0.187606 TGGAGGGATCGCCTAGCTAA 59.812 55.000 6.09 0.00 33.72 3.09
948 3635 0.539901 GTGGAGGGATCGCCTAGCTA 60.540 60.000 6.09 0.00 33.72 3.32
949 3636 1.834822 GTGGAGGGATCGCCTAGCT 60.835 63.158 6.09 0.00 33.72 3.32
950 3637 0.539901 TAGTGGAGGGATCGCCTAGC 60.540 60.000 6.09 0.00 33.72 3.42
951 3638 2.223803 ATAGTGGAGGGATCGCCTAG 57.776 55.000 6.09 0.00 33.72 3.02
981 3669 1.134068 GGTTTCCTAGGCATGGAGGAC 60.134 57.143 2.96 3.28 41.67 3.85
988 3676 2.159382 CGTTGTTGGTTTCCTAGGCAT 58.841 47.619 2.96 0.00 0.00 4.40
995 3683 2.359531 TGGAATGTCGTTGTTGGTTTCC 59.640 45.455 0.00 0.00 33.40 3.13
1025 3715 3.064324 ATTGCCACTCTTGCCGGC 61.064 61.111 22.73 22.73 46.43 6.13
1026 3716 2.703798 CCATTGCCACTCTTGCCGG 61.704 63.158 0.00 0.00 0.00 6.13
1027 3717 2.703798 CCCATTGCCACTCTTGCCG 61.704 63.158 0.00 0.00 0.00 5.69
1029 3719 1.885871 GACCCATTGCCACTCTTGC 59.114 57.895 0.00 0.00 0.00 4.01
1030 3720 1.308069 CCGACCCATTGCCACTCTTG 61.308 60.000 0.00 0.00 0.00 3.02
1031 3721 1.002134 CCGACCCATTGCCACTCTT 60.002 57.895 0.00 0.00 0.00 2.85
1032 3722 2.671070 CCGACCCATTGCCACTCT 59.329 61.111 0.00 0.00 0.00 3.24
1033 3723 3.134127 GCCGACCCATTGCCACTC 61.134 66.667 0.00 0.00 0.00 3.51
1034 3724 3.210012 AAGCCGACCCATTGCCACT 62.210 57.895 0.00 0.00 0.00 4.00
1035 3725 2.676471 AAGCCGACCCATTGCCAC 60.676 61.111 0.00 0.00 0.00 5.01
1036 3726 2.361104 GAAGCCGACCCATTGCCA 60.361 61.111 0.00 0.00 0.00 4.92
1220 3929 3.495729 GCCTTGTCAGGGGAAGGA 58.504 61.111 2.75 0.00 41.26 3.36
1344 4053 1.301479 GGCGGGACTTGTCGACTTT 60.301 57.895 17.92 0.00 0.00 2.66
1346 4055 4.052229 CGGCGGGACTTGTCGACT 62.052 66.667 17.92 0.00 31.24 4.18
1367 4076 4.148825 GTCTCGCGGTCCTGGCAT 62.149 66.667 6.13 0.00 0.00 4.40
1437 4146 2.186384 GAGCTGCTCCACGCTGAT 59.814 61.111 18.80 0.00 39.69 2.90
1494 4203 1.784301 TTCCCCATGAGTTCGCCCAA 61.784 55.000 0.00 0.00 0.00 4.12
1601 4310 2.113986 GTGCCCTCCTGCTGTTGT 59.886 61.111 0.00 0.00 0.00 3.32
1668 4377 1.134699 CATCTGCACCACCGTATCACT 60.135 52.381 0.00 0.00 0.00 3.41
1719 4429 3.053077 CCTGGTACATGGGAGGGAAATA 58.947 50.000 0.00 0.00 38.20 1.40
1856 4566 3.000819 CCGTAGACCAGGGTGCCA 61.001 66.667 0.00 0.00 0.00 4.92
1914 4624 3.409570 GCATCTGCATCACCATATCACT 58.590 45.455 0.00 0.00 41.59 3.41
2012 4722 0.305313 GACGAGATCGACGCTAGCTT 59.695 55.000 13.93 2.39 43.02 3.74
2124 4836 6.293244 GGCGAATAAAACCATACACATAGACC 60.293 42.308 0.00 0.00 0.00 3.85
2464 5180 8.586273 CGCAAGATTTTAGACACCAAAAATATG 58.414 33.333 0.00 0.00 35.87 1.78
2603 5319 3.769739 ATCTTTATCCAGGCATGCGTA 57.230 42.857 13.36 0.00 0.00 4.42
2605 5321 4.318332 TCTAATCTTTATCCAGGCATGCG 58.682 43.478 12.44 0.00 0.00 4.73
2627 5343 9.646427 GCTGAAAATCCTATCTCGTAATAGATT 57.354 33.333 7.95 0.00 37.41 2.40
2628 5344 8.807118 TGCTGAAAATCCTATCTCGTAATAGAT 58.193 33.333 7.95 0.00 39.54 1.98
2629 5345 8.082852 GTGCTGAAAATCCTATCTCGTAATAGA 58.917 37.037 7.95 0.00 31.98 1.98
2630 5346 7.329717 GGTGCTGAAAATCCTATCTCGTAATAG 59.670 40.741 0.00 1.38 0.00 1.73
2631 5347 7.152645 GGTGCTGAAAATCCTATCTCGTAATA 58.847 38.462 0.00 0.00 0.00 0.98
2632 5348 5.992217 GGTGCTGAAAATCCTATCTCGTAAT 59.008 40.000 0.00 0.00 0.00 1.89
2633 5349 5.357257 GGTGCTGAAAATCCTATCTCGTAA 58.643 41.667 0.00 0.00 0.00 3.18
2634 5350 4.202223 GGGTGCTGAAAATCCTATCTCGTA 60.202 45.833 0.00 0.00 0.00 3.43
2635 5351 3.432326 GGGTGCTGAAAATCCTATCTCGT 60.432 47.826 0.00 0.00 0.00 4.18
2636 5352 3.134458 GGGTGCTGAAAATCCTATCTCG 58.866 50.000 0.00 0.00 0.00 4.04
2637 5353 3.134458 CGGGTGCTGAAAATCCTATCTC 58.866 50.000 0.00 0.00 0.00 2.75
2638 5354 2.158755 CCGGGTGCTGAAAATCCTATCT 60.159 50.000 0.00 0.00 0.00 1.98
2639 5355 2.222027 CCGGGTGCTGAAAATCCTATC 58.778 52.381 0.00 0.00 0.00 2.08
2640 5356 1.133792 CCCGGGTGCTGAAAATCCTAT 60.134 52.381 14.18 0.00 0.00 2.57
2641 5357 0.254747 CCCGGGTGCTGAAAATCCTA 59.745 55.000 14.18 0.00 0.00 2.94
2642 5358 1.000896 CCCGGGTGCTGAAAATCCT 60.001 57.895 14.18 0.00 0.00 3.24
2643 5359 1.304134 ACCCGGGTGCTGAAAATCC 60.304 57.895 29.69 0.00 0.00 3.01
2644 5360 1.883021 CACCCGGGTGCTGAAAATC 59.117 57.895 39.44 0.00 39.39 2.17
2645 5361 4.095590 CACCCGGGTGCTGAAAAT 57.904 55.556 39.44 4.30 39.39 1.82
2662 5378 0.843984 TTTATAGAGGGTGCAGGGGC 59.156 55.000 0.00 0.00 41.68 5.80
2663 5379 1.843851 TGTTTATAGAGGGTGCAGGGG 59.156 52.381 0.00 0.00 0.00 4.79
2664 5380 2.505819 ACTGTTTATAGAGGGTGCAGGG 59.494 50.000 0.00 0.00 0.00 4.45
2665 5381 3.914426 ACTGTTTATAGAGGGTGCAGG 57.086 47.619 0.00 0.00 0.00 4.85
2666 5382 7.552687 TGAATTTACTGTTTATAGAGGGTGCAG 59.447 37.037 0.00 0.00 0.00 4.41
2667 5383 7.398829 TGAATTTACTGTTTATAGAGGGTGCA 58.601 34.615 0.00 0.00 0.00 4.57
2668 5384 7.859325 TGAATTTACTGTTTATAGAGGGTGC 57.141 36.000 0.00 0.00 0.00 5.01
2715 5431 6.040391 TCGATGTCCCAAAGTTTCAGATTTTT 59.960 34.615 0.00 0.00 0.00 1.94
2716 5432 5.534654 TCGATGTCCCAAAGTTTCAGATTTT 59.465 36.000 0.00 0.00 0.00 1.82
2717 5433 5.070001 TCGATGTCCCAAAGTTTCAGATTT 58.930 37.500 0.00 0.00 0.00 2.17
2718 5434 4.651778 TCGATGTCCCAAAGTTTCAGATT 58.348 39.130 0.00 0.00 0.00 2.40
2719 5435 4.286297 TCGATGTCCCAAAGTTTCAGAT 57.714 40.909 0.00 0.00 0.00 2.90
2720 5436 3.762407 TCGATGTCCCAAAGTTTCAGA 57.238 42.857 0.00 0.00 0.00 3.27
2721 5437 3.563808 TGTTCGATGTCCCAAAGTTTCAG 59.436 43.478 0.00 0.00 0.00 3.02
2722 5438 3.546724 TGTTCGATGTCCCAAAGTTTCA 58.453 40.909 0.00 0.00 0.00 2.69
2723 5439 4.215399 TGATGTTCGATGTCCCAAAGTTTC 59.785 41.667 0.00 0.00 0.00 2.78
2724 5440 4.141287 TGATGTTCGATGTCCCAAAGTTT 58.859 39.130 0.00 0.00 0.00 2.66
2725 5441 3.750371 TGATGTTCGATGTCCCAAAGTT 58.250 40.909 0.00 0.00 0.00 2.66
2726 5442 3.417069 TGATGTTCGATGTCCCAAAGT 57.583 42.857 0.00 0.00 0.00 2.66
2727 5443 3.940852 TCATGATGTTCGATGTCCCAAAG 59.059 43.478 0.00 0.00 0.00 2.77
2728 5444 3.949132 TCATGATGTTCGATGTCCCAAA 58.051 40.909 0.00 0.00 0.00 3.28
2729 5445 3.625649 TCATGATGTTCGATGTCCCAA 57.374 42.857 0.00 0.00 0.00 4.12
2730 5446 3.625649 TTCATGATGTTCGATGTCCCA 57.374 42.857 0.00 0.00 0.00 4.37
2731 5447 3.941483 AGTTTCATGATGTTCGATGTCCC 59.059 43.478 0.00 0.00 0.00 4.46
2732 5448 5.551760 AAGTTTCATGATGTTCGATGTCC 57.448 39.130 0.00 0.00 0.00 4.02
2733 5449 7.077605 TCAAAAGTTTCATGATGTTCGATGTC 58.922 34.615 0.00 0.00 0.00 3.06
2734 5450 6.969366 TCAAAAGTTTCATGATGTTCGATGT 58.031 32.000 0.00 0.00 0.00 3.06
2735 5451 7.751793 TCATCAAAAGTTTCATGATGTTCGATG 59.248 33.333 21.45 4.26 46.61 3.84
2736 5452 7.819644 TCATCAAAAGTTTCATGATGTTCGAT 58.180 30.769 21.45 0.00 46.61 3.59
2737 5453 7.200778 TCATCAAAAGTTTCATGATGTTCGA 57.799 32.000 21.45 7.37 46.61 3.71
2738 5454 7.966753 AGATCATCAAAAGTTTCATGATGTTCG 59.033 33.333 21.45 5.21 45.79 3.95
2739 5455 9.635520 AAGATCATCAAAAGTTTCATGATGTTC 57.364 29.630 21.45 21.29 46.61 3.18
2740 5456 9.419297 CAAGATCATCAAAAGTTTCATGATGTT 57.581 29.630 21.45 19.76 46.61 2.71
2741 5457 7.544566 GCAAGATCATCAAAAGTTTCATGATGT 59.455 33.333 21.45 16.53 46.61 3.06
2743 5459 7.608153 TGCAAGATCATCAAAAGTTTCATGAT 58.392 30.769 17.17 17.17 38.44 2.45
2744 5460 6.983984 TGCAAGATCATCAAAAGTTTCATGA 58.016 32.000 10.94 10.94 0.00 3.07
2745 5461 7.646446 TTGCAAGATCATCAAAAGTTTCATG 57.354 32.000 0.00 0.00 0.00 3.07
2746 5462 7.929785 ACTTTGCAAGATCATCAAAAGTTTCAT 59.070 29.630 0.00 0.00 30.47 2.57
2747 5463 7.267128 ACTTTGCAAGATCATCAAAAGTTTCA 58.733 30.769 0.00 0.00 30.47 2.69
2748 5464 7.704789 ACTTTGCAAGATCATCAAAAGTTTC 57.295 32.000 0.00 0.00 30.47 2.78
2749 5465 8.496707 AAACTTTGCAAGATCATCAAAAGTTT 57.503 26.923 22.79 22.79 32.73 2.66
2750 5466 8.496707 AAAACTTTGCAAGATCATCAAAAGTT 57.503 26.923 16.93 16.93 30.47 2.66
2751 5467 9.252962 CTAAAACTTTGCAAGATCATCAAAAGT 57.747 29.630 0.00 9.50 30.47 2.66
2752 5468 8.219105 GCTAAAACTTTGCAAGATCATCAAAAG 58.781 33.333 0.00 2.72 30.47 2.27
2753 5469 7.927629 AGCTAAAACTTTGCAAGATCATCAAAA 59.072 29.630 0.00 0.00 30.47 2.44
2754 5470 7.436118 AGCTAAAACTTTGCAAGATCATCAAA 58.564 30.769 0.00 1.46 0.00 2.69
2755 5471 6.985117 AGCTAAAACTTTGCAAGATCATCAA 58.015 32.000 0.00 0.00 0.00 2.57
2756 5472 6.579666 AGCTAAAACTTTGCAAGATCATCA 57.420 33.333 0.00 0.00 0.00 3.07
2757 5473 8.970691 TTTAGCTAAAACTTTGCAAGATCATC 57.029 30.769 16.53 0.00 0.00 2.92
2758 5474 9.762933 TTTTTAGCTAAAACTTTGCAAGATCAT 57.237 25.926 27.22 0.00 35.14 2.45
2759 5475 9.762933 ATTTTTAGCTAAAACTTTGCAAGATCA 57.237 25.926 27.22 11.33 38.48 2.92
2773 5489 9.769093 GCTCTTCGAATGTTATTTTTAGCTAAA 57.231 29.630 14.96 14.96 0.00 1.85
2774 5490 8.941977 TGCTCTTCGAATGTTATTTTTAGCTAA 58.058 29.630 0.86 0.86 0.00 3.09
2775 5491 8.388103 GTGCTCTTCGAATGTTATTTTTAGCTA 58.612 33.333 0.00 0.00 0.00 3.32
2776 5492 7.119846 AGTGCTCTTCGAATGTTATTTTTAGCT 59.880 33.333 0.00 0.00 0.00 3.32
2777 5493 7.244192 AGTGCTCTTCGAATGTTATTTTTAGC 58.756 34.615 0.00 0.00 0.00 3.09
2778 5494 8.443160 TGAGTGCTCTTCGAATGTTATTTTTAG 58.557 33.333 0.00 0.00 0.00 1.85
2779 5495 8.317891 TGAGTGCTCTTCGAATGTTATTTTTA 57.682 30.769 0.00 0.00 0.00 1.52
2780 5496 7.202016 TGAGTGCTCTTCGAATGTTATTTTT 57.798 32.000 0.00 0.00 0.00 1.94
2781 5497 6.801539 TGAGTGCTCTTCGAATGTTATTTT 57.198 33.333 0.00 0.00 0.00 1.82
2782 5498 6.801539 TTGAGTGCTCTTCGAATGTTATTT 57.198 33.333 0.00 0.00 0.00 1.40
2783 5499 6.801539 TTTGAGTGCTCTTCGAATGTTATT 57.198 33.333 0.00 0.00 0.00 1.40
2784 5500 6.992063 ATTTGAGTGCTCTTCGAATGTTAT 57.008 33.333 0.00 0.00 0.00 1.89
2785 5501 7.899178 TTATTTGAGTGCTCTTCGAATGTTA 57.101 32.000 0.00 0.00 0.00 2.41
2786 5502 6.801539 TTATTTGAGTGCTCTTCGAATGTT 57.198 33.333 0.00 0.00 0.00 2.71
2787 5503 6.801539 TTTATTTGAGTGCTCTTCGAATGT 57.198 33.333 0.00 0.00 0.00 2.71
2868 5584 0.181587 TCGTGGAGCCCTCACAAAAA 59.818 50.000 0.00 0.00 35.03 1.94
2869 5585 0.181587 TTCGTGGAGCCCTCACAAAA 59.818 50.000 0.00 0.00 35.03 2.44
2870 5586 0.250295 CTTCGTGGAGCCCTCACAAA 60.250 55.000 0.00 0.00 35.03 2.83
2871 5587 1.371183 CTTCGTGGAGCCCTCACAA 59.629 57.895 0.00 0.00 35.03 3.33
2872 5588 2.583441 CCTTCGTGGAGCCCTCACA 61.583 63.158 0.00 0.00 38.35 3.58
2873 5589 2.113243 AACCTTCGTGGAGCCCTCAC 62.113 60.000 4.38 0.00 39.71 3.51
2874 5590 0.543410 TAACCTTCGTGGAGCCCTCA 60.543 55.000 4.38 0.00 39.71 3.86
2875 5591 0.831307 ATAACCTTCGTGGAGCCCTC 59.169 55.000 4.38 0.00 39.71 4.30
2876 5592 1.286248 AATAACCTTCGTGGAGCCCT 58.714 50.000 4.38 0.00 39.71 5.19
2877 5593 1.743394 CAAATAACCTTCGTGGAGCCC 59.257 52.381 4.38 0.00 39.71 5.19
2878 5594 2.433436 ACAAATAACCTTCGTGGAGCC 58.567 47.619 4.38 0.00 39.71 4.70
2879 5595 3.821841 CAACAAATAACCTTCGTGGAGC 58.178 45.455 4.38 0.00 39.71 4.70
2880 5596 3.502211 AGCAACAAATAACCTTCGTGGAG 59.498 43.478 4.38 0.00 39.71 3.86
2881 5597 3.252215 CAGCAACAAATAACCTTCGTGGA 59.748 43.478 4.38 0.00 39.71 4.02
2882 5598 3.252215 TCAGCAACAAATAACCTTCGTGG 59.748 43.478 0.00 0.00 42.93 4.94
2883 5599 4.481930 TCAGCAACAAATAACCTTCGTG 57.518 40.909 0.00 0.00 0.00 4.35
2884 5600 5.067283 AGTTTCAGCAACAAATAACCTTCGT 59.933 36.000 0.00 0.00 37.93 3.85
2885 5601 5.519722 AGTTTCAGCAACAAATAACCTTCG 58.480 37.500 0.00 0.00 37.93 3.79
2886 5602 7.621102 CAAAGTTTCAGCAACAAATAACCTTC 58.379 34.615 0.00 0.00 37.93 3.46
2887 5603 6.037062 GCAAAGTTTCAGCAACAAATAACCTT 59.963 34.615 0.00 0.00 37.93 3.50
2888 5604 5.523552 GCAAAGTTTCAGCAACAAATAACCT 59.476 36.000 0.00 0.00 37.93 3.50
2889 5605 5.293079 TGCAAAGTTTCAGCAACAAATAACC 59.707 36.000 0.00 0.00 37.93 2.85
2890 5606 6.343226 TGCAAAGTTTCAGCAACAAATAAC 57.657 33.333 0.00 0.00 37.93 1.89
2891 5607 5.523188 CCTGCAAAGTTTCAGCAACAAATAA 59.477 36.000 2.65 0.00 37.93 1.40
2892 5608 5.049167 CCTGCAAAGTTTCAGCAACAAATA 58.951 37.500 2.65 0.00 37.93 1.40
2893 5609 3.872771 CCTGCAAAGTTTCAGCAACAAAT 59.127 39.130 2.65 0.00 37.93 2.32
2894 5610 3.056250 TCCTGCAAAGTTTCAGCAACAAA 60.056 39.130 2.65 0.00 37.93 2.83
2895 5611 2.495270 TCCTGCAAAGTTTCAGCAACAA 59.505 40.909 2.65 0.00 37.93 2.83
2896 5612 2.098614 TCCTGCAAAGTTTCAGCAACA 58.901 42.857 2.65 0.00 37.93 3.33
2897 5613 2.869233 TCCTGCAAAGTTTCAGCAAC 57.131 45.000 2.65 0.00 37.89 4.17
2898 5614 3.384146 TGATTCCTGCAAAGTTTCAGCAA 59.616 39.130 2.65 0.00 37.89 3.91
2899 5615 2.957680 TGATTCCTGCAAAGTTTCAGCA 59.042 40.909 1.19 1.19 36.72 4.41
2900 5616 3.648339 TGATTCCTGCAAAGTTTCAGC 57.352 42.857 8.64 1.41 0.00 4.26
2901 5617 4.746611 GGTTTGATTCCTGCAAAGTTTCAG 59.253 41.667 0.00 7.63 36.06 3.02
2902 5618 4.405358 AGGTTTGATTCCTGCAAAGTTTCA 59.595 37.500 0.00 0.00 36.06 2.69
2903 5619 4.948847 AGGTTTGATTCCTGCAAAGTTTC 58.051 39.130 0.00 0.00 36.06 2.78
2904 5620 5.357742 AAGGTTTGATTCCTGCAAAGTTT 57.642 34.783 0.00 0.00 36.06 2.66
2905 5621 5.104982 TCAAAGGTTTGATTCCTGCAAAGTT 60.105 36.000 0.87 0.00 41.88 2.66
2906 5622 4.405358 TCAAAGGTTTGATTCCTGCAAAGT 59.595 37.500 0.87 0.00 41.88 2.66
2907 5623 4.947645 TCAAAGGTTTGATTCCTGCAAAG 58.052 39.130 0.87 0.00 41.88 2.77
2919 5635 7.977853 CAGGGATCAAAGATTATCAAAGGTTTG 59.022 37.037 0.00 0.00 39.48 2.93
2920 5636 7.895429 TCAGGGATCAAAGATTATCAAAGGTTT 59.105 33.333 0.00 0.00 0.00 3.27
2921 5637 7.413446 TCAGGGATCAAAGATTATCAAAGGTT 58.587 34.615 0.00 0.00 0.00 3.50
2922 5638 6.973642 TCAGGGATCAAAGATTATCAAAGGT 58.026 36.000 0.00 0.00 0.00 3.50
2923 5639 7.886629 TTCAGGGATCAAAGATTATCAAAGG 57.113 36.000 0.00 0.00 0.00 3.11
2924 5640 8.964772 ACTTTCAGGGATCAAAGATTATCAAAG 58.035 33.333 9.54 0.00 34.30 2.77
2925 5641 8.884124 ACTTTCAGGGATCAAAGATTATCAAA 57.116 30.769 9.54 0.00 34.30 2.69
2926 5642 8.884124 AACTTTCAGGGATCAAAGATTATCAA 57.116 30.769 9.54 0.00 34.30 2.57
2927 5643 8.884124 AAACTTTCAGGGATCAAAGATTATCA 57.116 30.769 9.54 0.00 34.30 2.15
2928 5644 8.960591 TGAAACTTTCAGGGATCAAAGATTATC 58.039 33.333 9.54 0.00 34.08 1.75
2929 5645 8.884124 TGAAACTTTCAGGGATCAAAGATTAT 57.116 30.769 9.54 0.00 34.08 1.28
2992 5708 1.139226 GCAACGCACGGGCATATTTG 61.139 55.000 11.77 8.22 41.24 2.32
2993 5709 1.138671 GCAACGCACGGGCATATTT 59.861 52.632 11.77 0.00 41.24 1.40
2994 5710 1.590610 TTGCAACGCACGGGCATATT 61.591 50.000 11.77 0.00 38.71 1.28
2995 5711 2.043405 TTGCAACGCACGGGCATAT 61.043 52.632 11.77 0.00 38.71 1.78
2996 5712 2.669910 TTGCAACGCACGGGCATA 60.670 55.556 11.77 0.00 38.71 3.14
2997 5713 4.341502 GTTGCAACGCACGGGCAT 62.342 61.111 14.90 0.00 38.71 4.40
3007 5723 2.232756 AATTGTTTCCCCGTTGCAAC 57.767 45.000 19.89 19.89 0.00 4.17
3008 5724 2.990066 AAATTGTTTCCCCGTTGCAA 57.010 40.000 0.00 0.00 0.00 4.08
3009 5725 3.829601 AGATAAATTGTTTCCCCGTTGCA 59.170 39.130 0.00 0.00 0.00 4.08
3010 5726 4.450082 AGATAAATTGTTTCCCCGTTGC 57.550 40.909 0.00 0.00 0.00 4.17
3011 5727 4.625311 GCAAGATAAATTGTTTCCCCGTTG 59.375 41.667 0.00 0.00 32.56 4.10
3012 5728 4.322424 GGCAAGATAAATTGTTTCCCCGTT 60.322 41.667 0.00 0.00 32.56 4.44
3013 5729 3.194755 GGCAAGATAAATTGTTTCCCCGT 59.805 43.478 0.00 0.00 32.56 5.28
3014 5730 3.447229 AGGCAAGATAAATTGTTTCCCCG 59.553 43.478 0.00 0.00 32.56 5.73
3015 5731 4.711846 AGAGGCAAGATAAATTGTTTCCCC 59.288 41.667 0.00 0.00 32.56 4.81
3016 5732 5.921962 AGAGGCAAGATAAATTGTTTCCC 57.078 39.130 0.00 0.00 32.56 3.97
3017 5733 5.578336 GCAAGAGGCAAGATAAATTGTTTCC 59.422 40.000 0.00 0.00 43.97 3.13
3018 5734 6.638168 GCAAGAGGCAAGATAAATTGTTTC 57.362 37.500 0.00 0.00 43.97 2.78
3033 5749 4.096984 AGTTATGCTTATTGTGCAAGAGGC 59.903 41.667 6.69 6.69 44.01 4.70
3034 5750 5.355071 TGAGTTATGCTTATTGTGCAAGAGG 59.645 40.000 0.00 0.00 44.01 3.69
3035 5751 6.426980 TGAGTTATGCTTATTGTGCAAGAG 57.573 37.500 0.00 0.00 44.01 2.85
3036 5752 6.816134 TTGAGTTATGCTTATTGTGCAAGA 57.184 33.333 0.00 0.00 44.01 3.02
3037 5753 7.596248 AGTTTTGAGTTATGCTTATTGTGCAAG 59.404 33.333 0.00 0.00 44.01 4.01
3038 5754 7.432869 AGTTTTGAGTTATGCTTATTGTGCAA 58.567 30.769 0.00 0.00 44.01 4.08
3039 5755 6.980593 AGTTTTGAGTTATGCTTATTGTGCA 58.019 32.000 0.00 0.00 44.95 4.57
3040 5756 7.308435 AGAGTTTTGAGTTATGCTTATTGTGC 58.692 34.615 0.00 0.00 0.00 4.57
3041 5757 8.506437 TGAGAGTTTTGAGTTATGCTTATTGTG 58.494 33.333 0.00 0.00 0.00 3.33
3042 5758 8.621532 TGAGAGTTTTGAGTTATGCTTATTGT 57.378 30.769 0.00 0.00 0.00 2.71
3043 5759 9.334693 GTTGAGAGTTTTGAGTTATGCTTATTG 57.665 33.333 0.00 0.00 0.00 1.90
3044 5760 9.066892 TGTTGAGAGTTTTGAGTTATGCTTATT 57.933 29.630 0.00 0.00 0.00 1.40
3045 5761 8.621532 TGTTGAGAGTTTTGAGTTATGCTTAT 57.378 30.769 0.00 0.00 0.00 1.73
3046 5762 7.173218 CCTGTTGAGAGTTTTGAGTTATGCTTA 59.827 37.037 0.00 0.00 0.00 3.09
3047 5763 6.016777 CCTGTTGAGAGTTTTGAGTTATGCTT 60.017 38.462 0.00 0.00 0.00 3.91
3048 5764 5.471456 CCTGTTGAGAGTTTTGAGTTATGCT 59.529 40.000 0.00 0.00 0.00 3.79
3049 5765 5.239525 ACCTGTTGAGAGTTTTGAGTTATGC 59.760 40.000 0.00 0.00 0.00 3.14
3050 5766 6.708054 AGACCTGTTGAGAGTTTTGAGTTATG 59.292 38.462 0.00 0.00 0.00 1.90
3051 5767 6.708054 CAGACCTGTTGAGAGTTTTGAGTTAT 59.292 38.462 0.00 0.00 0.00 1.89
3052 5768 6.049149 CAGACCTGTTGAGAGTTTTGAGTTA 58.951 40.000 0.00 0.00 0.00 2.24
3053 5769 4.878397 CAGACCTGTTGAGAGTTTTGAGTT 59.122 41.667 0.00 0.00 0.00 3.01
3054 5770 4.446371 CAGACCTGTTGAGAGTTTTGAGT 58.554 43.478 0.00 0.00 0.00 3.41
3055 5771 3.249559 GCAGACCTGTTGAGAGTTTTGAG 59.750 47.826 0.00 0.00 0.00 3.02
3056 5772 3.206150 GCAGACCTGTTGAGAGTTTTGA 58.794 45.455 0.00 0.00 0.00 2.69
3057 5773 2.291741 GGCAGACCTGTTGAGAGTTTTG 59.708 50.000 0.00 0.00 0.00 2.44
3058 5774 2.576615 GGCAGACCTGTTGAGAGTTTT 58.423 47.619 0.00 0.00 0.00 2.43
3059 5775 2.262423 GGCAGACCTGTTGAGAGTTT 57.738 50.000 0.00 0.00 0.00 2.66
3071 5787 0.107643 GCAAGGAGGATAGGCAGACC 59.892 60.000 0.00 0.00 0.00 3.85
3072 5788 0.107643 GGCAAGGAGGATAGGCAGAC 59.892 60.000 0.00 0.00 0.00 3.51
3073 5789 0.326522 TGGCAAGGAGGATAGGCAGA 60.327 55.000 0.00 0.00 32.48 4.26
3074 5790 0.179034 GTGGCAAGGAGGATAGGCAG 60.179 60.000 0.00 0.00 37.22 4.85
3075 5791 1.635817 GGTGGCAAGGAGGATAGGCA 61.636 60.000 0.00 0.00 0.00 4.75
3076 5792 1.149401 GGTGGCAAGGAGGATAGGC 59.851 63.158 0.00 0.00 0.00 3.93
3077 5793 0.695803 AGGGTGGCAAGGAGGATAGG 60.696 60.000 0.00 0.00 0.00 2.57
3078 5794 0.761802 GAGGGTGGCAAGGAGGATAG 59.238 60.000 0.00 0.00 0.00 2.08
3079 5795 0.044092 TGAGGGTGGCAAGGAGGATA 59.956 55.000 0.00 0.00 0.00 2.59
3080 5796 1.229951 TGAGGGTGGCAAGGAGGAT 60.230 57.895 0.00 0.00 0.00 3.24
3081 5797 2.206900 TGAGGGTGGCAAGGAGGA 59.793 61.111 0.00 0.00 0.00 3.71
3082 5798 2.352805 GTGAGGGTGGCAAGGAGG 59.647 66.667 0.00 0.00 0.00 4.30
3083 5799 2.352805 GGTGAGGGTGGCAAGGAG 59.647 66.667 0.00 0.00 0.00 3.69
3084 5800 3.636231 CGGTGAGGGTGGCAAGGA 61.636 66.667 0.00 0.00 0.00 3.36
3085 5801 3.636231 TCGGTGAGGGTGGCAAGG 61.636 66.667 0.00 0.00 0.00 3.61
3086 5802 2.358737 GTCGGTGAGGGTGGCAAG 60.359 66.667 0.00 0.00 0.00 4.01
3087 5803 4.308458 CGTCGGTGAGGGTGGCAA 62.308 66.667 0.00 0.00 0.00 4.52
3089 5805 3.771160 ATCGTCGGTGAGGGTGGC 61.771 66.667 0.00 0.00 0.00 5.01
3090 5806 1.676678 ATCATCGTCGGTGAGGGTGG 61.677 60.000 14.47 0.00 30.62 4.61
3091 5807 1.001268 CTATCATCGTCGGTGAGGGTG 60.001 57.143 14.47 0.46 30.85 4.61
3092 5808 1.319541 CTATCATCGTCGGTGAGGGT 58.680 55.000 14.47 0.00 0.00 4.34
3093 5809 0.039074 GCTATCATCGTCGGTGAGGG 60.039 60.000 14.47 9.79 0.00 4.30
3094 5810 0.386100 CGCTATCATCGTCGGTGAGG 60.386 60.000 14.47 10.13 0.00 3.86
3095 5811 0.386100 CCGCTATCATCGTCGGTGAG 60.386 60.000 14.47 2.35 37.33 3.51
3096 5812 1.652563 CCGCTATCATCGTCGGTGA 59.347 57.895 11.24 11.24 37.33 4.02
3097 5813 4.228451 CCGCTATCATCGTCGGTG 57.772 61.111 0.00 0.00 37.33 4.94
3099 5815 0.248907 AACACCGCTATCATCGTCGG 60.249 55.000 0.00 0.00 46.61 4.79
3100 5816 1.121240 GAACACCGCTATCATCGTCG 58.879 55.000 0.00 0.00 0.00 5.12
3101 5817 1.121240 CGAACACCGCTATCATCGTC 58.879 55.000 0.00 0.00 0.00 4.20
3102 5818 3.251817 CGAACACCGCTATCATCGT 57.748 52.632 0.00 0.00 0.00 3.73
3112 5828 3.414700 GTGCTCAGGCGAACACCG 61.415 66.667 0.00 0.00 42.25 4.94
3113 5829 1.891919 TTGTGCTCAGGCGAACACC 60.892 57.895 9.28 0.00 37.42 4.16
3114 5830 1.279840 GTTGTGCTCAGGCGAACAC 59.720 57.895 6.11 6.11 42.25 3.32
3115 5831 2.243957 CGTTGTGCTCAGGCGAACA 61.244 57.895 8.47 0.00 42.25 3.18
3116 5832 2.551270 CGTTGTGCTCAGGCGAAC 59.449 61.111 8.47 0.00 42.25 3.95
3117 5833 3.345808 GCGTTGTGCTCAGGCGAA 61.346 61.111 15.52 0.00 42.25 4.70
3126 5842 1.741770 ATCTTCGGGAGCGTTGTGC 60.742 57.895 0.00 0.00 46.98 4.57
3127 5843 0.389817 TCATCTTCGGGAGCGTTGTG 60.390 55.000 0.00 0.00 0.00 3.33
3128 5844 0.537188 ATCATCTTCGGGAGCGTTGT 59.463 50.000 0.00 0.00 0.00 3.32
3129 5845 1.212616 GATCATCTTCGGGAGCGTTG 58.787 55.000 0.00 0.00 0.00 4.10
3130 5846 0.824109 TGATCATCTTCGGGAGCGTT 59.176 50.000 0.00 0.00 0.00 4.84
3131 5847 0.824109 TTGATCATCTTCGGGAGCGT 59.176 50.000 0.00 0.00 0.00 5.07
3132 5848 2.064762 GATTGATCATCTTCGGGAGCG 58.935 52.381 0.00 0.00 0.00 5.03
3133 5849 2.421619 GGATTGATCATCTTCGGGAGC 58.578 52.381 0.00 0.00 31.67 4.70
3134 5850 2.369860 TGGGATTGATCATCTTCGGGAG 59.630 50.000 0.00 0.00 31.67 4.30
3135 5851 2.104792 GTGGGATTGATCATCTTCGGGA 59.895 50.000 0.00 0.00 31.67 5.14
3136 5852 2.498167 GTGGGATTGATCATCTTCGGG 58.502 52.381 0.00 0.00 31.67 5.14
3137 5853 2.138320 CGTGGGATTGATCATCTTCGG 58.862 52.381 0.00 0.00 31.67 4.30
3138 5854 1.528586 GCGTGGGATTGATCATCTTCG 59.471 52.381 0.00 0.00 31.67 3.79
3139 5855 1.876156 GGCGTGGGATTGATCATCTTC 59.124 52.381 0.00 0.00 31.67 2.87
3140 5856 1.212688 TGGCGTGGGATTGATCATCTT 59.787 47.619 0.00 0.00 31.67 2.40
3141 5857 0.839277 TGGCGTGGGATTGATCATCT 59.161 50.000 0.00 0.00 31.67 2.90
3142 5858 1.679139 TTGGCGTGGGATTGATCATC 58.321 50.000 0.00 0.00 0.00 2.92
3143 5859 1.958579 CATTGGCGTGGGATTGATCAT 59.041 47.619 0.00 0.00 0.00 2.45
3144 5860 1.064832 TCATTGGCGTGGGATTGATCA 60.065 47.619 0.00 0.00 0.00 2.92
3145 5861 1.605710 CTCATTGGCGTGGGATTGATC 59.394 52.381 0.00 0.00 0.00 2.92
3146 5862 1.064463 ACTCATTGGCGTGGGATTGAT 60.064 47.619 0.00 0.00 0.00 2.57
3147 5863 0.327924 ACTCATTGGCGTGGGATTGA 59.672 50.000 0.00 0.00 0.00 2.57
3148 5864 1.133025 GAACTCATTGGCGTGGGATTG 59.867 52.381 0.00 0.00 0.00 2.67
3149 5865 1.463674 GAACTCATTGGCGTGGGATT 58.536 50.000 0.00 0.00 0.00 3.01
3150 5866 0.744414 CGAACTCATTGGCGTGGGAT 60.744 55.000 0.00 0.00 0.00 3.85
3151 5867 1.375396 CGAACTCATTGGCGTGGGA 60.375 57.895 0.00 0.00 0.00 4.37
3152 5868 3.039202 GCGAACTCATTGGCGTGGG 62.039 63.158 0.00 0.00 29.33 4.61
3153 5869 2.480555 GCGAACTCATTGGCGTGG 59.519 61.111 0.00 0.00 29.33 4.94
3154 5870 2.324330 TGGCGAACTCATTGGCGTG 61.324 57.895 0.00 0.00 40.24 5.34
3155 5871 2.031919 TGGCGAACTCATTGGCGT 59.968 55.556 0.00 0.00 40.24 5.68
3156 5872 2.480555 GTGGCGAACTCATTGGCG 59.519 61.111 0.00 0.00 40.24 5.69
3157 5873 2.877691 GGTGGCGAACTCATTGGC 59.122 61.111 0.00 0.00 38.72 4.52
3158 5874 3.039202 GCGGTGGCGAACTCATTGG 62.039 63.158 0.00 0.00 0.00 3.16
3159 5875 1.647545 ATGCGGTGGCGAACTCATTG 61.648 55.000 0.00 0.00 44.10 2.82
3160 5876 1.377202 ATGCGGTGGCGAACTCATT 60.377 52.632 0.00 0.00 44.10 2.57
3161 5877 2.108514 CATGCGGTGGCGAACTCAT 61.109 57.895 0.00 0.00 44.10 2.90
3162 5878 2.741985 CATGCGGTGGCGAACTCA 60.742 61.111 0.00 0.00 44.10 3.41
3163 5879 2.740714 GACATGCGGTGGCGAACTC 61.741 63.158 0.00 0.00 44.10 3.01
3164 5880 2.742372 GACATGCGGTGGCGAACT 60.742 61.111 0.00 0.00 44.10 3.01
3175 5891 2.183409 AATGAAGGGTGCGACATGC 58.817 52.632 0.00 0.00 46.70 4.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.