Multiple sequence alignment - TraesCS7A01G550500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G550500 chr7A 100.000 6929 0 0 1 6929 724263888 724256960 0.000000e+00 12796.0
1 TraesCS7A01G550500 chr7A 97.542 3051 47 5 804 3843 724369709 724372742 0.000000e+00 5193.0
2 TraesCS7A01G550500 chr7A 97.760 2857 53 7 3827 6675 724372796 724375649 0.000000e+00 4911.0
3 TraesCS7A01G550500 chr7A 98.773 326 1 2 1 324 724369389 724369713 1.680000e-160 577.0
4 TraesCS7A01G550500 chr7A 93.248 311 20 1 1101 1411 724151820 724152129 2.280000e-124 457.0
5 TraesCS7A01G550500 chr7A 79.242 607 96 16 1747 2336 724189136 724189729 5.040000e-106 396.0
6 TraesCS7A01G550500 chr7A 82.368 397 64 4 1935 2330 724152774 724153165 2.390000e-89 340.0
7 TraesCS7A01G550500 chr7A 84.722 216 31 2 5765 5978 724225235 724225450 1.510000e-51 215.0
8 TraesCS7A01G550500 chr7A 87.709 179 15 3 2403 2579 724258931 724258758 1.180000e-47 202.0
9 TraesCS7A01G550500 chr7A 87.709 179 15 3 4958 5131 724261486 724261310 1.180000e-47 202.0
10 TraesCS7A01G550500 chr7A 87.363 182 15 4 2400 2579 724373925 724374100 1.180000e-47 202.0
11 TraesCS7A01G550500 chr7A 86.813 182 17 3 4955 5131 724371305 724371484 5.480000e-46 196.0
12 TraesCS7A01G550500 chr7A 80.335 239 34 6 1676 1913 724152495 724152721 1.200000e-37 169.0
13 TraesCS7A01G550500 chrUn 92.490 2157 101 22 4528 6675 87951437 87953541 0.000000e+00 3029.0
14 TraesCS7A01G550500 chrUn 93.896 1540 45 11 1583 3095 87946835 87948352 0.000000e+00 2278.0
15 TraesCS7A01G550500 chrUn 89.340 985 40 29 606 1577 87945852 87946784 0.000000e+00 1177.0
16 TraesCS7A01G550500 chrUn 92.157 663 29 4 3827 4488 87950568 87951208 0.000000e+00 915.0
17 TraesCS7A01G550500 chrUn 95.134 411 20 0 3433 3843 87950103 87950513 0.000000e+00 649.0
18 TraesCS7A01G550500 chrUn 78.698 676 113 18 1674 2336 92813460 92814117 8.310000e-114 422.0
19 TraesCS7A01G550500 chrUn 82.576 396 65 2 1935 2330 92801343 92801734 5.140000e-91 346.0
20 TraesCS7A01G550500 chrUn 82.143 392 66 4 1935 2323 92781432 92781822 4.010000e-87 333.0
21 TraesCS7A01G550500 chrUn 91.837 196 16 0 1215 1410 92800537 92800732 2.460000e-69 274.0
22 TraesCS7A01G550500 chrUn 80.635 315 44 10 1101 1399 333301890 333301577 1.940000e-55 228.0
23 TraesCS7A01G550500 chrUn 98.333 120 2 0 211 330 87944252 87944371 1.960000e-50 211.0
24 TraesCS7A01G550500 chrUn 86.592 179 24 0 5765 5943 92815021 92815199 1.520000e-46 198.0
25 TraesCS7A01G550500 chrUn 87.006 177 16 3 2404 2579 87951836 87952006 7.090000e-45 193.0
26 TraesCS7A01G550500 chrUn 91.304 138 12 0 1241 1378 92780585 92780722 9.170000e-44 189.0
27 TraesCS7A01G550500 chrUn 80.524 267 35 10 1101 1351 377263475 377263740 9.170000e-44 189.0
28 TraesCS7A01G550500 chrUn 97.826 92 1 1 3080 3171 87949950 87950040 2.590000e-34 158.0
29 TraesCS7A01G550500 chrUn 81.667 180 29 4 1222 1399 87936048 87936225 5.600000e-31 147.0
30 TraesCS7A01G550500 chrUn 94.828 58 3 0 1101 1158 92780463 92780520 2.660000e-14 91.6
31 TraesCS7A01G550500 chrUn 81.553 103 13 5 715 815 49987570 49987668 5.760000e-11 80.5
32 TraesCS7A01G550500 chrUn 89.394 66 3 1 3197 3262 87950042 87950103 5.760000e-11 80.5
33 TraesCS7A01G550500 chr6B 97.959 147 3 0 6783 6929 109071538 109071684 8.920000e-64 255.0
34 TraesCS7A01G550500 chr6B 93.836 146 8 1 6785 6929 45528680 45528825 1.170000e-52 219.0
35 TraesCS7A01G550500 chr6B 93.478 46 3 0 559 604 490639739 490639694 1.250000e-07 69.4
36 TraesCS7A01G550500 chr5A 88.995 209 19 4 3857 4063 352899908 352899702 8.920000e-64 255.0
37 TraesCS7A01G550500 chr5A 87.685 203 23 2 3857 4057 275102213 275102011 1.160000e-57 235.0
38 TraesCS7A01G550500 chr5A 97.015 67 1 1 3778 3844 567884576 567884511 2.040000e-20 111.0
39 TraesCS7A01G550500 chr5A 100.000 35 0 0 570 604 599967537 599967503 1.610000e-06 65.8
40 TraesCS7A01G550500 chr6A 88.500 200 20 3 3858 4056 157337514 157337317 8.980000e-59 239.0
41 TraesCS7A01G550500 chr6A 88.177 203 21 3 3857 4057 591650237 591650036 8.980000e-59 239.0
42 TraesCS7A01G550500 chr6A 93.878 147 8 1 6783 6929 9515485 9515340 3.250000e-53 220.0
43 TraesCS7A01G550500 chr6A 86.076 79 7 4 737 815 615138600 615138526 1.600000e-11 82.4
44 TraesCS7A01G550500 chr6A 75.159 157 37 2 5767 5922 575255101 575255256 9.640000e-09 73.1
45 TraesCS7A01G550500 chr2D 88.000 200 22 2 3858 4056 554047839 554047641 1.160000e-57 235.0
46 TraesCS7A01G550500 chr1D 88.060 201 20 3 3860 4057 397084124 397084323 1.160000e-57 235.0
47 TraesCS7A01G550500 chr1D 87.940 199 22 2 3863 4060 342066184 342065987 4.180000e-57 233.0
48 TraesCS7A01G550500 chr1D 90.826 109 3 2 6673 6777 95683674 95683779 9.370000e-29 139.0
49 TraesCS7A01G550500 chr3D 94.558 147 8 0 6783 6929 25587072 25587218 1.940000e-55 228.0
50 TraesCS7A01G550500 chr3D 97.015 67 0 2 3778 3844 34365090 34365026 2.040000e-20 111.0
51 TraesCS7A01G550500 chr3B 94.595 148 7 1 6783 6929 795279957 795279810 1.940000e-55 228.0
52 TraesCS7A01G550500 chr3B 90.991 111 10 0 497 607 172005912 172005802 4.330000e-32 150.0
53 TraesCS7A01G550500 chr3A 94.558 147 8 0 6783 6929 24753650 24753504 1.940000e-55 228.0
54 TraesCS7A01G550500 chr3A 94.318 88 4 1 527 613 21069828 21069915 4.360000e-27 134.0
55 TraesCS7A01G550500 chr3A 86.905 84 7 2 732 815 497296288 497296367 2.660000e-14 91.6
56 TraesCS7A01G550500 chr1B 93.333 150 9 1 6781 6929 496507510 496507659 3.250000e-53 220.0
57 TraesCS7A01G550500 chr1B 93.478 46 2 1 568 612 675897154 675897109 4.490000e-07 67.6
58 TraesCS7A01G550500 chr6D 93.243 148 8 2 6783 6929 315815041 315815187 4.210000e-52 217.0
59 TraesCS7A01G550500 chr7D 93.197 147 9 1 6783 6929 579336626 579336481 1.510000e-51 215.0
60 TraesCS7A01G550500 chr7D 88.393 112 6 2 6673 6780 366660553 366660445 2.030000e-25 128.0
61 TraesCS7A01G550500 chr7D 79.000 200 26 12 616 815 13870894 13870711 9.440000e-24 122.0
62 TraesCS7A01G550500 chr7D 98.485 66 0 1 3778 3843 348128850 348128914 1.580000e-21 115.0
63 TraesCS7A01G550500 chr7D 76.630 184 32 10 615 796 37101591 37101765 2.660000e-14 91.6
64 TraesCS7A01G550500 chr5D 91.071 112 3 2 6673 6780 367230100 367230208 2.010000e-30 145.0
65 TraesCS7A01G550500 chr5D 78.378 222 38 9 615 835 478288457 478288245 1.210000e-27 135.0
66 TraesCS7A01G550500 chr5D 97.015 67 1 1 3778 3844 539149685 539149620 2.040000e-20 111.0
67 TraesCS7A01G550500 chr5D 89.796 49 5 0 564 612 177173508 177173556 5.800000e-06 63.9
68 TraesCS7A01G550500 chr4A 91.071 112 3 2 6673 6780 540099296 540099188 2.010000e-30 145.0
69 TraesCS7A01G550500 chr4A 100.000 29 0 0 4061 4089 300463818 300463846 3.000000e-03 54.7
70 TraesCS7A01G550500 chr2A 88.991 109 5 3 6673 6777 613365623 613365728 2.030000e-25 128.0
71 TraesCS7A01G550500 chr1A 88.393 112 5 3 6673 6780 22635252 22635359 2.030000e-25 128.0
72 TraesCS7A01G550500 chr1A 94.595 37 2 0 577 613 360164292 360164328 2.700000e-04 58.4
73 TraesCS7A01G550500 chr1A 82.353 68 8 3 692 757 534447958 534448023 1.000000e-03 56.5
74 TraesCS7A01G550500 chr4D 87.500 112 7 2 6673 6780 471815924 471816032 9.440000e-24 122.0
75 TraesCS7A01G550500 chr4D 96.970 66 1 1 3778 3843 414346375 414346311 7.350000e-20 110.0
76 TraesCS7A01G550500 chr7B 87.850 107 6 3 6673 6775 555660293 555660396 1.220000e-22 119.0
77 TraesCS7A01G550500 chr7B 98.438 64 0 1 3780 3843 289163661 289163599 2.040000e-20 111.0
78 TraesCS7A01G550500 chr7B 97.500 40 1 0 567 606 357106503 357106464 1.250000e-07 69.4
79 TraesCS7A01G550500 chr2B 84.921 126 7 6 6658 6778 706721108 706721226 4.390000e-22 117.0
80 TraesCS7A01G550500 chr5B 98.485 66 0 1 3778 3843 547071173 547071237 1.580000e-21 115.0
81 TraesCS7A01G550500 chr5B 97.436 39 1 0 566 604 191962506 191962468 4.490000e-07 67.6
82 TraesCS7A01G550500 chr4B 83.019 106 9 5 732 835 142913308 142913406 3.440000e-13 87.9
83 TraesCS7A01G550500 chr4B 79.487 117 15 8 731 839 178377033 178376918 2.680000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G550500 chr7A 724256960 724263888 6928 True 12796.000000 12796 100.000000 1 6929 1 chr7A.!!$R1 6928
1 TraesCS7A01G550500 chr7A 724369389 724375649 6260 False 2215.800000 5193 93.650200 1 6675 5 chr7A.!!$F4 6674
2 TraesCS7A01G550500 chr7A 724189136 724189729 593 False 396.000000 396 79.242000 1747 2336 1 chr7A.!!$F1 589
3 TraesCS7A01G550500 chr7A 724151820 724153165 1345 False 322.000000 457 85.317000 1101 2330 3 chr7A.!!$F3 1229
4 TraesCS7A01G550500 chr7A 724258758 724261486 2728 True 202.000000 202 87.709000 2403 5131 2 chr7A.!!$R2 2728
5 TraesCS7A01G550500 chrUn 87944252 87953541 9289 False 965.611111 3029 92.841778 211 6675 9 chrUn.!!$F4 6464
6 TraesCS7A01G550500 chrUn 92800537 92801734 1197 False 310.000000 346 87.206500 1215 2330 2 chrUn.!!$F6 1115
7 TraesCS7A01G550500 chrUn 92813460 92815199 1739 False 310.000000 422 82.645000 1674 5943 2 chrUn.!!$F7 4269
8 TraesCS7A01G550500 chrUn 92780463 92781822 1359 False 204.533333 333 89.425000 1101 2323 3 chrUn.!!$F5 1222

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
657 1971 1.067212 GCTCGTCTACACCCGATGAAT 59.933 52.381 0.0 0.0 31.9 2.57 F
2058 3717 0.960364 GCTTTTCCGAGGCATGTGGA 60.960 55.000 0.0 0.0 0.0 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
5273 8835 1.002430 TGACATGCCCACTTCTCTCAC 59.998 52.381 0.0 0.0 0.00 3.51 R
6675 10365 2.489329 TCCTTGTTAGCAGCTTCATTGC 59.511 45.455 0.0 0.0 41.83 3.56 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
124 125 9.688592 AATTCTCACAATTCAAGAAATCTGAAC 57.311 29.630 0.00 0.00 33.10 3.18
342 1656 5.193679 GGTTCCTAAATGCCTGACACTTAT 58.806 41.667 0.00 0.00 0.00 1.73
346 1660 6.055588 TCCTAAATGCCTGACACTTATAAGC 58.944 40.000 12.54 0.00 0.00 3.09
371 1685 5.779529 ACCATGGAATCATATTTCTGCAC 57.220 39.130 21.47 0.00 31.33 4.57
403 1717 6.436261 GTGCAAGATGATGATGTAGAAATGG 58.564 40.000 0.00 0.00 0.00 3.16
406 1720 6.040166 GCAAGATGATGATGTAGAAATGGGTT 59.960 38.462 0.00 0.00 0.00 4.11
408 1722 6.666678 AGATGATGATGTAGAAATGGGTTGT 58.333 36.000 0.00 0.00 0.00 3.32
409 1723 6.769822 AGATGATGATGTAGAAATGGGTTGTC 59.230 38.462 0.00 0.00 0.00 3.18
434 1748 1.454653 GACCGTGAACTTGCGTCTTAC 59.545 52.381 0.00 0.00 0.00 2.34
435 1749 1.068127 ACCGTGAACTTGCGTCTTACT 59.932 47.619 0.00 0.00 0.00 2.24
436 1750 2.132762 CCGTGAACTTGCGTCTTACTT 58.867 47.619 0.00 0.00 0.00 2.24
476 1790 2.031870 ACCTTTTTCTGCTCCAACCAC 58.968 47.619 0.00 0.00 0.00 4.16
485 1799 3.055819 TCTGCTCCAACCACAGTTCTATC 60.056 47.826 0.00 0.00 32.45 2.08
487 1801 2.027192 GCTCCAACCACAGTTCTATCCA 60.027 50.000 0.00 0.00 32.45 3.41
497 1811 7.001674 ACCACAGTTCTATCCACAAAATTGTA 58.998 34.615 0.00 0.00 39.91 2.41
500 1814 8.230486 CACAGTTCTATCCACAAAATTGTACTC 58.770 37.037 0.00 0.00 39.91 2.59
501 1815 7.390718 ACAGTTCTATCCACAAAATTGTACTCC 59.609 37.037 0.00 0.00 39.91 3.85
502 1816 6.884836 AGTTCTATCCACAAAATTGTACTCCC 59.115 38.462 0.00 0.00 39.91 4.30
503 1817 6.636454 TCTATCCACAAAATTGTACTCCCT 57.364 37.500 0.00 0.00 39.91 4.20
504 1818 6.650120 TCTATCCACAAAATTGTACTCCCTC 58.350 40.000 0.00 0.00 39.91 4.30
505 1819 4.993705 TCCACAAAATTGTACTCCCTCT 57.006 40.909 0.00 0.00 39.91 3.69
506 1820 6.636454 ATCCACAAAATTGTACTCCCTCTA 57.364 37.500 0.00 0.00 39.91 2.43
507 1821 6.636454 TCCACAAAATTGTACTCCCTCTAT 57.364 37.500 0.00 0.00 39.91 1.98
508 1822 7.027874 TCCACAAAATTGTACTCCCTCTATT 57.972 36.000 0.00 0.00 39.91 1.73
509 1823 7.110155 TCCACAAAATTGTACTCCCTCTATTC 58.890 38.462 0.00 0.00 39.91 1.75
510 1824 6.884295 CCACAAAATTGTACTCCCTCTATTCA 59.116 38.462 0.00 0.00 39.91 2.57
511 1825 7.148239 CCACAAAATTGTACTCCCTCTATTCAC 60.148 40.741 0.00 0.00 39.91 3.18
512 1826 7.607991 CACAAAATTGTACTCCCTCTATTCACT 59.392 37.037 0.00 0.00 39.91 3.41
513 1827 8.164070 ACAAAATTGTACTCCCTCTATTCACTT 58.836 33.333 0.00 0.00 40.16 3.16
514 1828 9.014297 CAAAATTGTACTCCCTCTATTCACTTT 57.986 33.333 0.00 0.00 0.00 2.66
515 1829 8.794335 AAATTGTACTCCCTCTATTCACTTTC 57.206 34.615 0.00 0.00 0.00 2.62
516 1830 5.578005 TGTACTCCCTCTATTCACTTTCG 57.422 43.478 0.00 0.00 0.00 3.46
517 1831 5.014858 TGTACTCCCTCTATTCACTTTCGT 58.985 41.667 0.00 0.00 0.00 3.85
518 1832 6.182627 TGTACTCCCTCTATTCACTTTCGTA 58.817 40.000 0.00 0.00 0.00 3.43
519 1833 6.660521 TGTACTCCCTCTATTCACTTTCGTAA 59.339 38.462 0.00 0.00 0.00 3.18
520 1834 6.210287 ACTCCCTCTATTCACTTTCGTAAG 57.790 41.667 0.00 0.00 37.40 2.34
535 1849 4.445452 TCGTAAGACATTTAAGACGGCT 57.555 40.909 0.00 0.00 45.01 5.52
536 1850 4.171005 TCGTAAGACATTTAAGACGGCTG 58.829 43.478 0.00 0.00 45.01 4.85
537 1851 3.306166 CGTAAGACATTTAAGACGGCTGG 59.694 47.826 0.00 0.00 43.02 4.85
538 1852 3.695830 AAGACATTTAAGACGGCTGGA 57.304 42.857 0.00 0.00 0.00 3.86
539 1853 3.695830 AGACATTTAAGACGGCTGGAA 57.304 42.857 0.00 0.00 0.00 3.53
540 1854 4.222124 AGACATTTAAGACGGCTGGAAT 57.778 40.909 0.00 0.00 0.00 3.01
541 1855 4.589908 AGACATTTAAGACGGCTGGAATT 58.410 39.130 0.00 0.00 0.00 2.17
542 1856 4.396166 AGACATTTAAGACGGCTGGAATTG 59.604 41.667 0.00 0.00 0.00 2.32
543 1857 4.331968 ACATTTAAGACGGCTGGAATTGA 58.668 39.130 12.59 0.00 0.00 2.57
544 1858 4.764823 ACATTTAAGACGGCTGGAATTGAA 59.235 37.500 12.59 0.00 0.00 2.69
545 1859 4.759516 TTTAAGACGGCTGGAATTGAAC 57.240 40.909 0.00 0.00 0.00 3.18
546 1860 2.568623 AAGACGGCTGGAATTGAACT 57.431 45.000 0.00 0.00 0.00 3.01
547 1861 3.695830 AAGACGGCTGGAATTGAACTA 57.304 42.857 0.00 0.00 0.00 2.24
548 1862 3.914426 AGACGGCTGGAATTGAACTAT 57.086 42.857 0.00 0.00 0.00 2.12
549 1863 4.222124 AGACGGCTGGAATTGAACTATT 57.778 40.909 0.00 0.00 0.00 1.73
550 1864 4.589908 AGACGGCTGGAATTGAACTATTT 58.410 39.130 0.00 0.00 0.00 1.40
551 1865 5.010282 AGACGGCTGGAATTGAACTATTTT 58.990 37.500 0.00 0.00 0.00 1.82
552 1866 5.059404 ACGGCTGGAATTGAACTATTTTG 57.941 39.130 0.00 0.00 0.00 2.44
553 1867 4.082245 ACGGCTGGAATTGAACTATTTTGG 60.082 41.667 0.00 0.00 0.00 3.28
554 1868 4.677779 CGGCTGGAATTGAACTATTTTGGG 60.678 45.833 0.00 0.00 0.00 4.12
555 1869 4.222810 GGCTGGAATTGAACTATTTTGGGT 59.777 41.667 0.00 0.00 0.00 4.51
556 1870 5.170748 GCTGGAATTGAACTATTTTGGGTG 58.829 41.667 0.00 0.00 0.00 4.61
557 1871 5.279456 GCTGGAATTGAACTATTTTGGGTGT 60.279 40.000 0.00 0.00 0.00 4.16
558 1872 6.739331 TGGAATTGAACTATTTTGGGTGTT 57.261 33.333 0.00 0.00 0.00 3.32
559 1873 6.520272 TGGAATTGAACTATTTTGGGTGTTG 58.480 36.000 0.00 0.00 0.00 3.33
560 1874 6.098982 TGGAATTGAACTATTTTGGGTGTTGT 59.901 34.615 0.00 0.00 0.00 3.32
561 1875 6.645003 GGAATTGAACTATTTTGGGTGTTGTC 59.355 38.462 0.00 0.00 0.00 3.18
562 1876 5.523438 TTGAACTATTTTGGGTGTTGTCC 57.477 39.130 0.00 0.00 0.00 4.02
563 1877 4.798882 TGAACTATTTTGGGTGTTGTCCT 58.201 39.130 0.00 0.00 0.00 3.85
564 1878 5.942961 TGAACTATTTTGGGTGTTGTCCTA 58.057 37.500 0.00 0.00 0.00 2.94
565 1879 6.366340 TGAACTATTTTGGGTGTTGTCCTAA 58.634 36.000 0.00 0.00 0.00 2.69
566 1880 6.834451 TGAACTATTTTGGGTGTTGTCCTAAA 59.166 34.615 0.00 0.00 36.44 1.85
567 1881 7.507616 TGAACTATTTTGGGTGTTGTCCTAAAT 59.492 33.333 0.00 0.00 40.70 1.40
568 1882 7.227049 ACTATTTTGGGTGTTGTCCTAAATG 57.773 36.000 10.95 5.81 39.06 2.32
569 1883 6.780522 ACTATTTTGGGTGTTGTCCTAAATGT 59.219 34.615 10.95 6.25 39.06 2.71
570 1884 5.523438 TTTTGGGTGTTGTCCTAAATGTC 57.477 39.130 0.00 0.00 37.67 3.06
571 1885 4.447138 TTGGGTGTTGTCCTAAATGTCT 57.553 40.909 0.00 0.00 0.00 3.41
572 1886 5.570205 TTGGGTGTTGTCCTAAATGTCTA 57.430 39.130 0.00 0.00 0.00 2.59
573 1887 5.570205 TGGGTGTTGTCCTAAATGTCTAA 57.430 39.130 0.00 0.00 0.00 2.10
574 1888 5.942961 TGGGTGTTGTCCTAAATGTCTAAA 58.057 37.500 0.00 0.00 0.00 1.85
575 1889 6.366340 TGGGTGTTGTCCTAAATGTCTAAAA 58.634 36.000 0.00 0.00 0.00 1.52
576 1890 6.263617 TGGGTGTTGTCCTAAATGTCTAAAAC 59.736 38.462 0.00 0.00 0.00 2.43
577 1891 6.368213 GGTGTTGTCCTAAATGTCTAAAACG 58.632 40.000 0.00 0.00 0.00 3.60
578 1892 5.849604 GTGTTGTCCTAAATGTCTAAAACGC 59.150 40.000 0.00 0.00 0.00 4.84
579 1893 5.049267 TGTTGTCCTAAATGTCTAAAACGCC 60.049 40.000 0.00 0.00 0.00 5.68
580 1894 4.901868 TGTCCTAAATGTCTAAAACGCCT 58.098 39.130 0.00 0.00 0.00 5.52
581 1895 5.310451 TGTCCTAAATGTCTAAAACGCCTT 58.690 37.500 0.00 0.00 0.00 4.35
582 1896 6.465948 TGTCCTAAATGTCTAAAACGCCTTA 58.534 36.000 0.00 0.00 0.00 2.69
583 1897 6.369615 TGTCCTAAATGTCTAAAACGCCTTAC 59.630 38.462 0.00 0.00 0.00 2.34
584 1898 6.369615 GTCCTAAATGTCTAAAACGCCTTACA 59.630 38.462 0.00 0.00 0.00 2.41
585 1899 6.935771 TCCTAAATGTCTAAAACGCCTTACAA 59.064 34.615 0.00 0.00 0.00 2.41
586 1900 7.444792 TCCTAAATGTCTAAAACGCCTTACAAA 59.555 33.333 0.00 0.00 0.00 2.83
587 1901 8.077386 CCTAAATGTCTAAAACGCCTTACAAAA 58.923 33.333 0.00 0.00 0.00 2.44
588 1902 7.924103 AAATGTCTAAAACGCCTTACAAAAG 57.076 32.000 0.00 0.00 0.00 2.27
589 1903 6.628919 ATGTCTAAAACGCCTTACAAAAGT 57.371 33.333 0.00 0.00 0.00 2.66
590 1904 5.812652 TGTCTAAAACGCCTTACAAAAGTG 58.187 37.500 0.00 0.00 0.00 3.16
591 1905 5.585445 TGTCTAAAACGCCTTACAAAAGTGA 59.415 36.000 0.00 0.00 0.00 3.41
592 1906 6.093771 TGTCTAAAACGCCTTACAAAAGTGAA 59.906 34.615 0.00 0.00 0.00 3.18
593 1907 7.136772 GTCTAAAACGCCTTACAAAAGTGAAT 58.863 34.615 0.00 0.00 0.00 2.57
594 1908 7.112984 GTCTAAAACGCCTTACAAAAGTGAATG 59.887 37.037 0.00 0.00 0.00 2.67
595 1909 3.915437 ACGCCTTACAAAAGTGAATGG 57.085 42.857 0.00 0.00 0.00 3.16
596 1910 3.482436 ACGCCTTACAAAAGTGAATGGA 58.518 40.909 0.00 0.00 0.00 3.41
597 1911 3.502211 ACGCCTTACAAAAGTGAATGGAG 59.498 43.478 0.00 0.00 0.00 3.86
598 1912 3.119849 CGCCTTACAAAAGTGAATGGAGG 60.120 47.826 0.00 0.00 0.00 4.30
599 1913 3.193479 GCCTTACAAAAGTGAATGGAGGG 59.807 47.826 0.00 0.00 0.00 4.30
600 1914 4.662278 CCTTACAAAAGTGAATGGAGGGA 58.338 43.478 0.00 0.00 0.00 4.20
601 1915 4.702131 CCTTACAAAAGTGAATGGAGGGAG 59.298 45.833 0.00 0.00 0.00 4.30
602 1916 3.884037 ACAAAAGTGAATGGAGGGAGT 57.116 42.857 0.00 0.00 0.00 3.85
603 1917 4.993705 ACAAAAGTGAATGGAGGGAGTA 57.006 40.909 0.00 0.00 0.00 2.59
604 1918 4.652822 ACAAAAGTGAATGGAGGGAGTAC 58.347 43.478 0.00 0.00 0.00 2.73
657 1971 1.067212 GCTCGTCTACACCCGATGAAT 59.933 52.381 0.00 0.00 31.90 2.57
664 1978 6.919662 TCGTCTACACCCGATGAATATTAAAC 59.080 38.462 0.00 0.00 0.00 2.01
666 1980 8.077991 CGTCTACACCCGATGAATATTAAACTA 58.922 37.037 0.00 0.00 0.00 2.24
667 1981 9.754382 GTCTACACCCGATGAATATTAAACTAA 57.246 33.333 0.00 0.00 0.00 2.24
735 2049 2.523245 TGCAGAGAGATGACTGAGTGT 58.477 47.619 0.00 0.00 36.38 3.55
740 2054 4.158209 CAGAGAGATGACTGAGTGTGTGAT 59.842 45.833 0.00 0.00 36.38 3.06
744 2058 1.869774 TGACTGAGTGTGTGATGTGC 58.130 50.000 0.00 0.00 0.00 4.57
784 2098 4.623932 TTTGGACATGTGAGTAGCTCTT 57.376 40.909 1.15 0.00 0.00 2.85
787 2101 4.600062 TGGACATGTGAGTAGCTCTTAGA 58.400 43.478 1.15 0.00 0.00 2.10
788 2102 5.016831 TGGACATGTGAGTAGCTCTTAGAA 58.983 41.667 1.15 0.00 0.00 2.10
789 2103 5.126222 TGGACATGTGAGTAGCTCTTAGAAG 59.874 44.000 1.15 0.00 0.00 2.85
790 2104 5.358442 GGACATGTGAGTAGCTCTTAGAAGA 59.642 44.000 1.15 0.00 0.00 2.87
791 2105 6.127591 GGACATGTGAGTAGCTCTTAGAAGAA 60.128 42.308 1.15 0.00 34.03 2.52
795 2109 9.160496 CATGTGAGTAGCTCTTAGAAGAAAAAT 57.840 33.333 0.00 0.00 34.03 1.82
2058 3717 0.960364 GCTTTTCCGAGGCATGTGGA 60.960 55.000 0.00 0.00 0.00 4.02
5273 8835 8.826710 TGATAATAGTGCAAGTAATTTCTTCCG 58.173 33.333 0.00 0.00 0.00 4.30
5502 9064 8.785329 TGTTTGTATGCAAGTACAGAATATCA 57.215 30.769 0.00 0.00 36.08 2.15
5996 9673 9.754382 GAGTGATGACATAAATGCCATAAATTT 57.246 29.630 0.00 0.00 30.81 1.82
6095 9772 8.454570 AATTATTGCTATGTGATGTGATGACA 57.545 30.769 0.00 0.00 36.22 3.58
6361 10038 1.077212 CATGCCTGCCTAGCCTGTT 60.077 57.895 0.00 0.00 0.00 3.16
6371 10048 1.271054 CCTAGCCTGTTCAACAGCACT 60.271 52.381 12.49 13.35 44.63 4.40
6380 10057 5.877012 CCTGTTCAACAGCACTATATCTTGT 59.123 40.000 12.49 0.00 44.63 3.16
6534 10213 5.654497 GATTTGCCCTCCTTTTACAATCTG 58.346 41.667 0.00 0.00 0.00 2.90
6587 10272 4.560819 GTCATGAAGAGAAGTTCAGCTACG 59.439 45.833 5.50 0.00 39.78 3.51
6676 10366 9.228949 AGATTCCAAATTATGATCTATGTCAGC 57.771 33.333 0.00 0.00 0.00 4.26
6677 10367 8.929260 ATTCCAAATTATGATCTATGTCAGCA 57.071 30.769 0.00 0.00 0.00 4.41
6678 10368 8.750515 TTCCAAATTATGATCTATGTCAGCAA 57.249 30.769 0.00 0.00 0.00 3.91
6679 10369 8.929260 TCCAAATTATGATCTATGTCAGCAAT 57.071 30.769 0.00 0.00 0.00 3.56
6680 10370 8.789762 TCCAAATTATGATCTATGTCAGCAATG 58.210 33.333 0.00 0.00 0.00 2.82
6681 10371 8.789762 CCAAATTATGATCTATGTCAGCAATGA 58.210 33.333 0.00 0.00 0.00 2.57
6684 10374 5.943706 ATGATCTATGTCAGCAATGAAGC 57.056 39.130 0.00 0.00 0.00 3.86
6695 10385 2.872370 GCAATGAAGCTGCTAACAAGG 58.128 47.619 0.90 4.91 36.84 3.61
6696 10386 2.489329 GCAATGAAGCTGCTAACAAGGA 59.511 45.455 0.90 0.00 36.84 3.36
6697 10387 3.057315 GCAATGAAGCTGCTAACAAGGAA 60.057 43.478 0.90 0.00 36.84 3.36
6698 10388 4.730657 CAATGAAGCTGCTAACAAGGAAG 58.269 43.478 0.90 0.00 0.00 3.46
6699 10389 2.783135 TGAAGCTGCTAACAAGGAAGG 58.217 47.619 0.90 0.00 0.00 3.46
6700 10390 2.371841 TGAAGCTGCTAACAAGGAAGGA 59.628 45.455 0.90 0.00 0.00 3.36
6701 10391 2.481289 AGCTGCTAACAAGGAAGGAC 57.519 50.000 0.00 0.00 0.00 3.85
6702 10392 1.699634 AGCTGCTAACAAGGAAGGACA 59.300 47.619 0.00 0.00 0.00 4.02
6703 10393 2.106511 AGCTGCTAACAAGGAAGGACAA 59.893 45.455 0.00 0.00 0.00 3.18
6704 10394 2.485814 GCTGCTAACAAGGAAGGACAAG 59.514 50.000 0.00 0.00 0.00 3.16
6705 10395 3.807209 GCTGCTAACAAGGAAGGACAAGA 60.807 47.826 0.00 0.00 0.00 3.02
6706 10396 3.999663 CTGCTAACAAGGAAGGACAAGAG 59.000 47.826 0.00 0.00 0.00 2.85
6707 10397 3.391296 TGCTAACAAGGAAGGACAAGAGT 59.609 43.478 0.00 0.00 0.00 3.24
6708 10398 3.997681 GCTAACAAGGAAGGACAAGAGTC 59.002 47.826 0.00 0.00 44.21 3.36
6717 10407 3.980583 GACAAGAGTCCGTCCAACA 57.019 52.632 0.00 0.00 38.89 3.33
6718 10408 2.234300 GACAAGAGTCCGTCCAACAA 57.766 50.000 0.00 0.00 38.89 2.83
6719 10409 2.767505 GACAAGAGTCCGTCCAACAAT 58.232 47.619 0.00 0.00 38.89 2.71
6720 10410 2.737252 GACAAGAGTCCGTCCAACAATC 59.263 50.000 0.00 0.00 38.89 2.67
6721 10411 2.368875 ACAAGAGTCCGTCCAACAATCT 59.631 45.455 0.00 0.00 0.00 2.40
6722 10412 2.738846 CAAGAGTCCGTCCAACAATCTG 59.261 50.000 0.00 0.00 0.00 2.90
6723 10413 2.248248 AGAGTCCGTCCAACAATCTGA 58.752 47.619 0.00 0.00 0.00 3.27
6724 10414 2.028930 AGAGTCCGTCCAACAATCTGAC 60.029 50.000 0.00 0.00 0.00 3.51
6725 10415 1.691976 AGTCCGTCCAACAATCTGACA 59.308 47.619 0.00 0.00 0.00 3.58
6726 10416 1.798813 GTCCGTCCAACAATCTGACAC 59.201 52.381 0.00 0.00 0.00 3.67
6727 10417 1.691976 TCCGTCCAACAATCTGACACT 59.308 47.619 0.00 0.00 0.00 3.55
6728 10418 1.800586 CCGTCCAACAATCTGACACTG 59.199 52.381 0.00 0.00 0.00 3.66
6729 10419 1.195448 CGTCCAACAATCTGACACTGC 59.805 52.381 0.00 0.00 0.00 4.40
6730 10420 2.498167 GTCCAACAATCTGACACTGCT 58.502 47.619 0.00 0.00 0.00 4.24
6731 10421 3.664107 GTCCAACAATCTGACACTGCTA 58.336 45.455 0.00 0.00 0.00 3.49
6732 10422 4.065088 GTCCAACAATCTGACACTGCTAA 58.935 43.478 0.00 0.00 0.00 3.09
6733 10423 4.515191 GTCCAACAATCTGACACTGCTAAA 59.485 41.667 0.00 0.00 0.00 1.85
6734 10424 4.756642 TCCAACAATCTGACACTGCTAAAG 59.243 41.667 0.00 0.00 0.00 1.85
6735 10425 4.756642 CCAACAATCTGACACTGCTAAAGA 59.243 41.667 0.00 0.00 0.00 2.52
6736 10426 5.239306 CCAACAATCTGACACTGCTAAAGAA 59.761 40.000 0.00 0.00 0.00 2.52
6737 10427 6.369005 CAACAATCTGACACTGCTAAAGAAG 58.631 40.000 0.00 0.00 0.00 2.85
6738 10428 5.615289 ACAATCTGACACTGCTAAAGAAGT 58.385 37.500 0.00 0.00 33.09 3.01
6739 10429 6.759272 ACAATCTGACACTGCTAAAGAAGTA 58.241 36.000 0.00 0.00 30.45 2.24
6740 10430 6.870965 ACAATCTGACACTGCTAAAGAAGTAG 59.129 38.462 0.00 0.00 43.14 2.57
6748 10438 4.734917 CTGCTAAAGAAGTAGTAGCACGT 58.265 43.478 0.61 0.00 43.97 4.49
6749 10439 5.130292 TGCTAAAGAAGTAGTAGCACGTT 57.870 39.130 0.61 0.00 43.97 3.99
6750 10440 5.535333 TGCTAAAGAAGTAGTAGCACGTTT 58.465 37.500 0.61 0.00 43.97 3.60
6751 10441 6.680810 TGCTAAAGAAGTAGTAGCACGTTTA 58.319 36.000 0.61 0.00 43.97 2.01
6752 10442 6.805271 TGCTAAAGAAGTAGTAGCACGTTTAG 59.195 38.462 0.61 0.00 43.97 1.85
6753 10443 6.237516 GCTAAAGAAGTAGTAGCACGTTTAGC 60.238 42.308 7.51 7.51 40.02 3.09
6754 10444 4.778534 AGAAGTAGTAGCACGTTTAGCA 57.221 40.909 0.00 0.00 0.00 3.49
6755 10445 4.483311 AGAAGTAGTAGCACGTTTAGCAC 58.517 43.478 0.00 0.00 0.00 4.40
6756 10446 3.928727 AGTAGTAGCACGTTTAGCACA 57.071 42.857 0.00 0.00 0.00 4.57
6757 10447 4.247267 AGTAGTAGCACGTTTAGCACAA 57.753 40.909 0.00 0.00 0.00 3.33
6758 10448 4.624015 AGTAGTAGCACGTTTAGCACAAA 58.376 39.130 0.00 0.00 0.00 2.83
6759 10449 4.684703 AGTAGTAGCACGTTTAGCACAAAG 59.315 41.667 0.00 0.00 0.00 2.77
6760 10450 3.724374 AGTAGCACGTTTAGCACAAAGA 58.276 40.909 0.00 0.00 0.00 2.52
6761 10451 4.315803 AGTAGCACGTTTAGCACAAAGAT 58.684 39.130 0.00 0.00 0.00 2.40
6762 10452 3.813529 AGCACGTTTAGCACAAAGATC 57.186 42.857 0.00 0.00 0.00 2.75
6763 10453 2.484264 AGCACGTTTAGCACAAAGATCC 59.516 45.455 0.00 0.00 0.00 3.36
6764 10454 2.724839 GCACGTTTAGCACAAAGATCCG 60.725 50.000 0.00 0.00 0.00 4.18
6765 10455 1.463444 ACGTTTAGCACAAAGATCCGC 59.537 47.619 0.00 0.00 0.00 5.54
6766 10456 1.463056 CGTTTAGCACAAAGATCCGCA 59.537 47.619 0.00 0.00 0.00 5.69
6767 10457 2.474526 CGTTTAGCACAAAGATCCGCAG 60.475 50.000 0.00 0.00 0.00 5.18
6768 10458 2.742053 GTTTAGCACAAAGATCCGCAGA 59.258 45.455 0.00 0.00 0.00 4.26
6769 10459 2.299993 TAGCACAAAGATCCGCAGAG 57.700 50.000 0.00 0.00 0.00 3.35
6770 10460 1.023513 AGCACAAAGATCCGCAGAGC 61.024 55.000 0.00 0.00 0.00 4.09
6771 10461 1.986575 GCACAAAGATCCGCAGAGCC 61.987 60.000 0.00 0.00 0.00 4.70
6772 10462 0.674581 CACAAAGATCCGCAGAGCCA 60.675 55.000 0.00 0.00 0.00 4.75
6773 10463 0.254178 ACAAAGATCCGCAGAGCCAT 59.746 50.000 0.00 0.00 0.00 4.40
6774 10464 1.340405 ACAAAGATCCGCAGAGCCATT 60.340 47.619 0.00 0.00 0.00 3.16
6775 10465 2.092968 ACAAAGATCCGCAGAGCCATTA 60.093 45.455 0.00 0.00 0.00 1.90
6776 10466 2.945008 CAAAGATCCGCAGAGCCATTAA 59.055 45.455 0.00 0.00 0.00 1.40
6777 10467 3.281727 AAGATCCGCAGAGCCATTAAA 57.718 42.857 0.00 0.00 0.00 1.52
6778 10468 2.843701 AGATCCGCAGAGCCATTAAAG 58.156 47.619 0.00 0.00 0.00 1.85
6779 10469 2.171448 AGATCCGCAGAGCCATTAAAGT 59.829 45.455 0.00 0.00 0.00 2.66
6780 10470 3.388024 AGATCCGCAGAGCCATTAAAGTA 59.612 43.478 0.00 0.00 0.00 2.24
6781 10471 3.838244 TCCGCAGAGCCATTAAAGTAT 57.162 42.857 0.00 0.00 0.00 2.12
6782 10472 3.466836 TCCGCAGAGCCATTAAAGTATG 58.533 45.455 0.00 0.00 0.00 2.39
6783 10473 2.549754 CCGCAGAGCCATTAAAGTATGG 59.450 50.000 0.00 0.00 46.46 2.74
6784 10474 2.549754 CGCAGAGCCATTAAAGTATGGG 59.450 50.000 4.93 0.00 44.35 4.00
6785 10475 2.294512 GCAGAGCCATTAAAGTATGGGC 59.705 50.000 4.93 0.00 44.35 5.36
6786 10476 3.554934 CAGAGCCATTAAAGTATGGGCA 58.445 45.455 0.00 0.00 44.35 5.36
6787 10477 3.567164 CAGAGCCATTAAAGTATGGGCAG 59.433 47.826 0.00 0.00 44.35 4.85
6788 10478 3.203040 AGAGCCATTAAAGTATGGGCAGT 59.797 43.478 0.00 0.00 44.35 4.40
6789 10479 4.412199 AGAGCCATTAAAGTATGGGCAGTA 59.588 41.667 0.00 0.00 44.35 2.74
6790 10480 4.461198 AGCCATTAAAGTATGGGCAGTAC 58.539 43.478 0.00 0.00 44.35 2.73
6791 10481 4.166144 AGCCATTAAAGTATGGGCAGTACT 59.834 41.667 0.00 0.00 44.35 2.73
6792 10482 4.515567 GCCATTAAAGTATGGGCAGTACTC 59.484 45.833 0.00 0.00 44.35 2.59
6793 10483 5.687706 GCCATTAAAGTATGGGCAGTACTCT 60.688 44.000 0.00 0.00 44.35 3.24
6794 10484 5.760253 CCATTAAAGTATGGGCAGTACTCTG 59.240 44.000 0.00 0.00 41.18 3.35
6827 10517 3.359523 GGAACGTTTGGGCCGGTC 61.360 66.667 0.46 0.00 41.21 4.79
6828 10518 2.592287 GAACGTTTGGGCCGGTCA 60.592 61.111 9.07 1.16 41.55 4.02
6829 10519 2.124236 AACGTTTGGGCCGGTCAA 60.124 55.556 9.07 8.42 0.00 3.18
6830 10520 1.726533 GAACGTTTGGGCCGGTCAAA 61.727 55.000 9.07 14.34 41.55 2.69
6831 10521 2.007113 AACGTTTGGGCCGGTCAAAC 62.007 55.000 29.16 29.16 46.04 2.93
6832 10522 2.732016 GTTTGGGCCGGTCAAACC 59.268 61.111 28.96 9.32 44.67 3.27
6833 10523 2.128507 GTTTGGGCCGGTCAAACCA 61.129 57.895 28.96 17.42 44.67 3.67
6834 10524 1.830408 TTTGGGCCGGTCAAACCAG 60.830 57.895 9.07 0.00 38.47 4.00
6835 10525 2.285889 TTTGGGCCGGTCAAACCAGA 62.286 55.000 9.07 0.00 38.47 3.86
6836 10526 2.359975 GGGCCGGTCAAACCAGAG 60.360 66.667 9.07 0.00 38.47 3.35
6837 10527 3.056328 GGCCGGTCAAACCAGAGC 61.056 66.667 0.00 0.00 38.47 4.09
6838 10528 3.056328 GCCGGTCAAACCAGAGCC 61.056 66.667 1.90 0.00 38.47 4.70
6839 10529 2.742372 CCGGTCAAACCAGAGCCG 60.742 66.667 0.00 0.00 38.47 5.52
6840 10530 3.423154 CGGTCAAACCAGAGCCGC 61.423 66.667 0.00 0.00 38.47 6.53
6841 10531 2.032681 GGTCAAACCAGAGCCGCT 59.967 61.111 0.00 0.00 38.42 5.52
6842 10532 1.295423 GGTCAAACCAGAGCCGCTA 59.705 57.895 0.00 0.00 38.42 4.26
6843 10533 0.741221 GGTCAAACCAGAGCCGCTAG 60.741 60.000 0.00 0.00 38.42 3.42
6844 10534 0.246635 GTCAAACCAGAGCCGCTAGA 59.753 55.000 0.00 0.00 0.00 2.43
6845 10535 1.134670 GTCAAACCAGAGCCGCTAGAT 60.135 52.381 0.00 0.00 0.00 1.98
6846 10536 1.137086 TCAAACCAGAGCCGCTAGATC 59.863 52.381 0.00 0.00 0.00 2.75
6847 10537 1.137872 CAAACCAGAGCCGCTAGATCT 59.862 52.381 0.00 0.00 0.00 2.75
6848 10538 0.749649 AACCAGAGCCGCTAGATCTG 59.250 55.000 5.18 10.87 40.13 2.90
6850 10540 2.725811 CAGAGCCGCTAGATCTGGA 58.274 57.895 10.75 0.00 37.41 3.86
6851 10541 0.313672 CAGAGCCGCTAGATCTGGAC 59.686 60.000 10.75 0.47 37.41 4.02
6852 10542 1.169661 AGAGCCGCTAGATCTGGACG 61.170 60.000 10.75 12.31 0.00 4.79
6853 10543 2.355244 GCCGCTAGATCTGGACGC 60.355 66.667 10.75 6.18 0.00 5.19
6854 10544 2.050895 CCGCTAGATCTGGACGCG 60.051 66.667 10.75 15.19 43.08 6.01
6855 10545 2.727647 CGCTAGATCTGGACGCGC 60.728 66.667 10.75 0.00 37.29 6.86
6856 10546 2.727647 GCTAGATCTGGACGCGCG 60.728 66.667 30.96 30.96 0.00 6.86
6857 10547 2.716244 CTAGATCTGGACGCGCGT 59.284 61.111 38.52 38.52 0.00 6.01
6858 10548 1.939597 CTAGATCTGGACGCGCGTA 59.060 57.895 37.91 21.70 0.00 4.42
6859 10549 0.306840 CTAGATCTGGACGCGCGTAA 59.693 55.000 37.91 25.56 0.00 3.18
6860 10550 0.028505 TAGATCTGGACGCGCGTAAC 59.971 55.000 37.91 30.26 0.00 2.50
6861 10551 2.202703 ATCTGGACGCGCGTAACC 60.203 61.111 37.91 32.29 0.00 2.85
6862 10552 4.764336 TCTGGACGCGCGTAACCG 62.764 66.667 37.91 26.04 37.07 4.44
6864 10554 4.644230 TGGACGCGCGTAACCGTT 62.644 61.111 37.91 11.85 37.87 4.44
6865 10555 2.503809 GGACGCGCGTAACCGTTA 60.504 61.111 37.91 0.00 37.87 3.18
6866 10556 2.499603 GGACGCGCGTAACCGTTAG 61.500 63.158 37.91 2.05 37.87 2.34
6867 10557 1.511887 GACGCGCGTAACCGTTAGA 60.512 57.895 37.91 0.00 37.87 2.10
6868 10558 0.863119 GACGCGCGTAACCGTTAGAT 60.863 55.000 37.91 8.42 37.87 1.98
6869 10559 0.456653 ACGCGCGTAACCGTTAGATT 60.457 50.000 37.08 3.77 33.26 2.40
6870 10560 0.641783 CGCGCGTAACCGTTAGATTT 59.358 50.000 24.19 0.00 36.15 2.17
6871 10561 1.588082 CGCGCGTAACCGTTAGATTTG 60.588 52.381 24.19 0.00 36.15 2.32
6872 10562 1.849348 GCGCGTAACCGTTAGATTTGC 60.849 52.381 8.43 0.00 36.15 3.68
6873 10563 1.267186 CGCGTAACCGTTAGATTTGCC 60.267 52.381 0.00 0.00 36.15 4.52
6874 10564 1.063027 GCGTAACCGTTAGATTTGCCC 59.937 52.381 0.00 0.00 36.15 5.36
6875 10565 1.667212 CGTAACCGTTAGATTTGCCCC 59.333 52.381 0.00 0.00 0.00 5.80
6876 10566 1.667212 GTAACCGTTAGATTTGCCCCG 59.333 52.381 0.00 0.00 0.00 5.73
6877 10567 1.310216 AACCGTTAGATTTGCCCCGC 61.310 55.000 0.00 0.00 0.00 6.13
6878 10568 1.747367 CCGTTAGATTTGCCCCGCA 60.747 57.895 0.00 0.00 36.47 5.69
6879 10569 1.101049 CCGTTAGATTTGCCCCGCAT 61.101 55.000 0.00 0.00 38.76 4.73
6880 10570 0.307760 CGTTAGATTTGCCCCGCATC 59.692 55.000 0.00 0.00 38.76 3.91
6881 10571 1.680338 GTTAGATTTGCCCCGCATCT 58.320 50.000 0.00 0.00 38.76 2.90
6882 10572 2.024414 GTTAGATTTGCCCCGCATCTT 58.976 47.619 0.00 0.00 38.76 2.40
6883 10573 1.967319 TAGATTTGCCCCGCATCTTC 58.033 50.000 0.00 0.00 38.76 2.87
6884 10574 0.257039 AGATTTGCCCCGCATCTTCT 59.743 50.000 0.00 0.00 38.76 2.85
6885 10575 1.490490 AGATTTGCCCCGCATCTTCTA 59.510 47.619 0.00 0.00 38.76 2.10
6886 10576 2.107204 AGATTTGCCCCGCATCTTCTAT 59.893 45.455 0.00 0.00 38.76 1.98
6887 10577 1.967319 TTTGCCCCGCATCTTCTATC 58.033 50.000 0.00 0.00 38.76 2.08
6888 10578 0.249868 TTGCCCCGCATCTTCTATCG 60.250 55.000 0.00 0.00 38.76 2.92
6889 10579 1.367840 GCCCCGCATCTTCTATCGT 59.632 57.895 0.00 0.00 0.00 3.73
6890 10580 0.667792 GCCCCGCATCTTCTATCGTC 60.668 60.000 0.00 0.00 0.00 4.20
6891 10581 0.673985 CCCCGCATCTTCTATCGTCA 59.326 55.000 0.00 0.00 0.00 4.35
6892 10582 1.273606 CCCCGCATCTTCTATCGTCAT 59.726 52.381 0.00 0.00 0.00 3.06
6893 10583 2.600731 CCCGCATCTTCTATCGTCATC 58.399 52.381 0.00 0.00 0.00 2.92
6894 10584 2.600731 CCGCATCTTCTATCGTCATCC 58.399 52.381 0.00 0.00 0.00 3.51
6895 10585 2.230025 CCGCATCTTCTATCGTCATCCT 59.770 50.000 0.00 0.00 0.00 3.24
6896 10586 3.497118 CGCATCTTCTATCGTCATCCTC 58.503 50.000 0.00 0.00 0.00 3.71
6897 10587 3.671971 CGCATCTTCTATCGTCATCCTCC 60.672 52.174 0.00 0.00 0.00 4.30
6898 10588 3.367910 GCATCTTCTATCGTCATCCTCCC 60.368 52.174 0.00 0.00 0.00 4.30
6899 10589 2.877866 TCTTCTATCGTCATCCTCCCC 58.122 52.381 0.00 0.00 0.00 4.81
6900 10590 1.896465 CTTCTATCGTCATCCTCCCCC 59.104 57.143 0.00 0.00 0.00 5.40
6901 10591 0.857675 TCTATCGTCATCCTCCCCCA 59.142 55.000 0.00 0.00 0.00 4.96
6902 10592 0.969894 CTATCGTCATCCTCCCCCAC 59.030 60.000 0.00 0.00 0.00 4.61
6903 10593 0.826256 TATCGTCATCCTCCCCCACG 60.826 60.000 0.00 0.00 0.00 4.94
6904 10594 3.849951 CGTCATCCTCCCCCACGG 61.850 72.222 0.00 0.00 0.00 4.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
124 125 6.035866 TGTTGCTCTTGTTGTTTGCATTTTAG 59.964 34.615 0.00 0.00 33.50 1.85
342 1656 6.998074 AGAAATATGATTCCATGGTTCGCTTA 59.002 34.615 12.58 3.65 34.62 3.09
346 1660 5.008911 TGCAGAAATATGATTCCATGGTTCG 59.991 40.000 12.58 3.83 34.62 3.95
382 1696 7.067859 ACAACCCATTTCTACATCATCATCTTG 59.932 37.037 0.00 0.00 0.00 3.02
403 1717 1.265905 GTTCACGGTCATTGGACAACC 59.734 52.381 0.00 0.00 46.17 3.77
406 1720 2.217750 CAAGTTCACGGTCATTGGACA 58.782 47.619 0.00 0.00 46.17 4.02
408 1722 1.234821 GCAAGTTCACGGTCATTGGA 58.765 50.000 0.00 0.00 0.00 3.53
409 1723 0.110238 CGCAAGTTCACGGTCATTGG 60.110 55.000 0.00 0.00 0.00 3.16
444 1758 4.020485 GCAGAAAAAGGTACTCCCTCTGTA 60.020 45.833 11.44 0.00 45.47 2.74
445 1759 3.244596 GCAGAAAAAGGTACTCCCTCTGT 60.245 47.826 11.44 0.00 45.47 3.41
446 1760 3.008485 AGCAGAAAAAGGTACTCCCTCTG 59.992 47.826 0.00 1.01 45.47 3.35
467 1781 3.007940 TGTGGATAGAACTGTGGTTGGAG 59.992 47.826 0.00 0.00 35.58 3.86
476 1790 7.148239 GGGAGTACAATTTTGTGGATAGAACTG 60.148 40.741 6.21 0.00 42.31 3.16
485 1799 6.884295 TGAATAGAGGGAGTACAATTTTGTGG 59.116 38.462 6.21 0.00 42.31 4.17
487 1801 7.690256 AGTGAATAGAGGGAGTACAATTTTGT 58.310 34.615 1.08 1.08 44.86 2.83
511 1825 5.347907 AGCCGTCTTAAATGTCTTACGAAAG 59.652 40.000 0.00 0.00 32.35 2.62
512 1826 5.119588 CAGCCGTCTTAAATGTCTTACGAAA 59.880 40.000 0.00 0.00 32.35 3.46
513 1827 4.624024 CAGCCGTCTTAAATGTCTTACGAA 59.376 41.667 0.00 0.00 32.35 3.85
514 1828 4.171005 CAGCCGTCTTAAATGTCTTACGA 58.829 43.478 0.00 0.00 32.35 3.43
515 1829 3.306166 CCAGCCGTCTTAAATGTCTTACG 59.694 47.826 0.00 0.00 0.00 3.18
516 1830 4.501071 TCCAGCCGTCTTAAATGTCTTAC 58.499 43.478 0.00 0.00 0.00 2.34
517 1831 4.811969 TCCAGCCGTCTTAAATGTCTTA 57.188 40.909 0.00 0.00 0.00 2.10
518 1832 3.695830 TCCAGCCGTCTTAAATGTCTT 57.304 42.857 0.00 0.00 0.00 3.01
519 1833 3.695830 TTCCAGCCGTCTTAAATGTCT 57.304 42.857 0.00 0.00 0.00 3.41
520 1834 4.394920 TCAATTCCAGCCGTCTTAAATGTC 59.605 41.667 0.00 0.00 0.00 3.06
521 1835 4.331968 TCAATTCCAGCCGTCTTAAATGT 58.668 39.130 0.00 0.00 0.00 2.71
522 1836 4.963276 TCAATTCCAGCCGTCTTAAATG 57.037 40.909 0.00 0.00 0.00 2.32
523 1837 5.010282 AGTTCAATTCCAGCCGTCTTAAAT 58.990 37.500 0.00 0.00 0.00 1.40
524 1838 4.394729 AGTTCAATTCCAGCCGTCTTAAA 58.605 39.130 0.00 0.00 0.00 1.52
525 1839 4.015872 AGTTCAATTCCAGCCGTCTTAA 57.984 40.909 0.00 0.00 0.00 1.85
526 1840 3.695830 AGTTCAATTCCAGCCGTCTTA 57.304 42.857 0.00 0.00 0.00 2.10
527 1841 2.568623 AGTTCAATTCCAGCCGTCTT 57.431 45.000 0.00 0.00 0.00 3.01
528 1842 3.914426 ATAGTTCAATTCCAGCCGTCT 57.086 42.857 0.00 0.00 0.00 4.18
529 1843 4.965119 AAATAGTTCAATTCCAGCCGTC 57.035 40.909 0.00 0.00 0.00 4.79
530 1844 4.082245 CCAAAATAGTTCAATTCCAGCCGT 60.082 41.667 0.00 0.00 0.00 5.68
531 1845 4.423732 CCAAAATAGTTCAATTCCAGCCG 58.576 43.478 0.00 0.00 0.00 5.52
532 1846 4.222810 ACCCAAAATAGTTCAATTCCAGCC 59.777 41.667 0.00 0.00 0.00 4.85
533 1847 5.170748 CACCCAAAATAGTTCAATTCCAGC 58.829 41.667 0.00 0.00 0.00 4.85
534 1848 6.345096 ACACCCAAAATAGTTCAATTCCAG 57.655 37.500 0.00 0.00 0.00 3.86
535 1849 6.098982 ACAACACCCAAAATAGTTCAATTCCA 59.901 34.615 0.00 0.00 0.00 3.53
536 1850 6.521162 ACAACACCCAAAATAGTTCAATTCC 58.479 36.000 0.00 0.00 0.00 3.01
537 1851 6.645003 GGACAACACCCAAAATAGTTCAATTC 59.355 38.462 0.00 0.00 0.00 2.17
538 1852 6.326323 AGGACAACACCCAAAATAGTTCAATT 59.674 34.615 0.00 0.00 0.00 2.32
539 1853 5.838521 AGGACAACACCCAAAATAGTTCAAT 59.161 36.000 0.00 0.00 0.00 2.57
540 1854 5.205056 AGGACAACACCCAAAATAGTTCAA 58.795 37.500 0.00 0.00 0.00 2.69
541 1855 4.798882 AGGACAACACCCAAAATAGTTCA 58.201 39.130 0.00 0.00 0.00 3.18
542 1856 6.887626 TTAGGACAACACCCAAAATAGTTC 57.112 37.500 0.00 0.00 0.00 3.01
543 1857 7.289084 ACATTTAGGACAACACCCAAAATAGTT 59.711 33.333 0.00 0.00 30.28 2.24
544 1858 6.780522 ACATTTAGGACAACACCCAAAATAGT 59.219 34.615 0.00 0.00 30.28 2.12
545 1859 7.176690 AGACATTTAGGACAACACCCAAAATAG 59.823 37.037 0.00 0.00 30.28 1.73
546 1860 7.007723 AGACATTTAGGACAACACCCAAAATA 58.992 34.615 0.00 0.00 30.28 1.40
547 1861 5.838521 AGACATTTAGGACAACACCCAAAAT 59.161 36.000 0.00 0.00 30.97 1.82
548 1862 5.205056 AGACATTTAGGACAACACCCAAAA 58.795 37.500 0.00 0.00 0.00 2.44
549 1863 4.798882 AGACATTTAGGACAACACCCAAA 58.201 39.130 0.00 0.00 0.00 3.28
550 1864 4.447138 AGACATTTAGGACAACACCCAA 57.553 40.909 0.00 0.00 0.00 4.12
551 1865 5.570205 TTAGACATTTAGGACAACACCCA 57.430 39.130 0.00 0.00 0.00 4.51
552 1866 6.567132 CGTTTTAGACATTTAGGACAACACCC 60.567 42.308 0.00 0.00 0.00 4.61
553 1867 6.368213 CGTTTTAGACATTTAGGACAACACC 58.632 40.000 0.00 0.00 0.00 4.16
554 1868 5.849604 GCGTTTTAGACATTTAGGACAACAC 59.150 40.000 0.00 0.00 0.00 3.32
555 1869 5.049267 GGCGTTTTAGACATTTAGGACAACA 60.049 40.000 0.00 0.00 0.00 3.33
556 1870 5.180680 AGGCGTTTTAGACATTTAGGACAAC 59.819 40.000 0.00 0.00 0.00 3.32
557 1871 5.310451 AGGCGTTTTAGACATTTAGGACAA 58.690 37.500 0.00 0.00 0.00 3.18
558 1872 4.901868 AGGCGTTTTAGACATTTAGGACA 58.098 39.130 0.00 0.00 0.00 4.02
559 1873 5.874895 AAGGCGTTTTAGACATTTAGGAC 57.125 39.130 0.00 0.00 0.00 3.85
560 1874 6.465948 TGTAAGGCGTTTTAGACATTTAGGA 58.534 36.000 0.00 0.00 0.00 2.94
561 1875 6.730960 TGTAAGGCGTTTTAGACATTTAGG 57.269 37.500 0.00 0.00 0.00 2.69
562 1876 9.113876 CTTTTGTAAGGCGTTTTAGACATTTAG 57.886 33.333 0.00 0.00 0.00 1.85
563 1877 8.623030 ACTTTTGTAAGGCGTTTTAGACATTTA 58.377 29.630 0.00 0.00 35.61 1.40
564 1878 7.434013 CACTTTTGTAAGGCGTTTTAGACATTT 59.566 33.333 0.00 0.00 35.61 2.32
565 1879 6.915843 CACTTTTGTAAGGCGTTTTAGACATT 59.084 34.615 0.00 0.00 35.61 2.71
566 1880 6.261381 TCACTTTTGTAAGGCGTTTTAGACAT 59.739 34.615 0.00 0.00 35.61 3.06
567 1881 5.585445 TCACTTTTGTAAGGCGTTTTAGACA 59.415 36.000 0.00 0.00 35.61 3.41
568 1882 6.051646 TCACTTTTGTAAGGCGTTTTAGAC 57.948 37.500 0.00 0.00 35.61 2.59
569 1883 6.680874 TTCACTTTTGTAAGGCGTTTTAGA 57.319 33.333 0.00 0.00 35.61 2.10
570 1884 6.362283 CCATTCACTTTTGTAAGGCGTTTTAG 59.638 38.462 0.00 0.00 35.61 1.85
571 1885 6.039493 TCCATTCACTTTTGTAAGGCGTTTTA 59.961 34.615 0.00 0.00 35.61 1.52
572 1886 5.047188 CCATTCACTTTTGTAAGGCGTTTT 58.953 37.500 0.00 0.00 35.61 2.43
573 1887 4.339814 TCCATTCACTTTTGTAAGGCGTTT 59.660 37.500 0.00 0.00 35.61 3.60
574 1888 3.886505 TCCATTCACTTTTGTAAGGCGTT 59.113 39.130 0.00 0.00 35.61 4.84
575 1889 3.482436 TCCATTCACTTTTGTAAGGCGT 58.518 40.909 0.00 0.00 35.61 5.68
576 1890 3.119849 CCTCCATTCACTTTTGTAAGGCG 60.120 47.826 0.00 0.00 35.61 5.52
577 1891 3.193479 CCCTCCATTCACTTTTGTAAGGC 59.807 47.826 0.00 0.00 35.61 4.35
578 1892 4.662278 TCCCTCCATTCACTTTTGTAAGG 58.338 43.478 0.00 0.00 35.61 2.69
579 1893 5.316987 ACTCCCTCCATTCACTTTTGTAAG 58.683 41.667 0.00 0.00 37.40 2.34
580 1894 5.319043 ACTCCCTCCATTCACTTTTGTAA 57.681 39.130 0.00 0.00 0.00 2.41
581 1895 4.993705 ACTCCCTCCATTCACTTTTGTA 57.006 40.909 0.00 0.00 0.00 2.41
582 1896 3.884037 ACTCCCTCCATTCACTTTTGT 57.116 42.857 0.00 0.00 0.00 2.83
583 1897 4.911390 AGTACTCCCTCCATTCACTTTTG 58.089 43.478 0.00 0.00 0.00 2.44
584 1898 5.584551 AAGTACTCCCTCCATTCACTTTT 57.415 39.130 0.00 0.00 0.00 2.27
585 1899 5.584551 AAAGTACTCCCTCCATTCACTTT 57.415 39.130 0.00 0.00 31.70 2.66
586 1900 5.584551 AAAAGTACTCCCTCCATTCACTT 57.415 39.130 0.00 0.00 0.00 3.16
587 1901 5.584551 AAAAAGTACTCCCTCCATTCACT 57.415 39.130 0.00 0.00 0.00 3.41
613 1927 2.076863 GGCTCGGAATTGGATATTCGG 58.923 52.381 0.00 0.00 0.00 4.30
641 1955 9.754382 TTAGTTTAATATTCATCGGGTGTAGAC 57.246 33.333 0.00 0.00 0.00 2.59
698 2012 9.458727 TCTCTCTGCATAAAAGAAAATCAGATT 57.541 29.630 0.00 0.00 0.00 2.40
699 2013 9.629878 ATCTCTCTGCATAAAAGAAAATCAGAT 57.370 29.630 0.00 0.00 0.00 2.90
701 2015 8.890718 TCATCTCTCTGCATAAAAGAAAATCAG 58.109 33.333 0.00 0.00 0.00 2.90
702 2016 8.671921 GTCATCTCTCTGCATAAAAGAAAATCA 58.328 33.333 0.00 0.00 0.00 2.57
703 2017 8.891720 AGTCATCTCTCTGCATAAAAGAAAATC 58.108 33.333 0.00 0.00 0.00 2.17
704 2018 8.675504 CAGTCATCTCTCTGCATAAAAGAAAAT 58.324 33.333 0.00 0.00 0.00 1.82
705 2019 7.879677 TCAGTCATCTCTCTGCATAAAAGAAAA 59.120 33.333 0.00 0.00 0.00 2.29
706 2020 7.389232 TCAGTCATCTCTCTGCATAAAAGAAA 58.611 34.615 0.00 0.00 0.00 2.52
709 2023 6.256104 CACTCAGTCATCTCTCTGCATAAAAG 59.744 42.308 0.00 0.00 0.00 2.27
714 2028 3.098377 ACACTCAGTCATCTCTCTGCAT 58.902 45.455 0.00 0.00 0.00 3.96
735 2049 0.672889 AATTTGGCACGCACATCACA 59.327 45.000 0.00 0.00 0.00 3.58
740 2054 2.200067 CTTTGAAATTTGGCACGCACA 58.800 42.857 0.00 0.00 0.00 4.57
744 2058 4.212911 CAAATGCTTTGAAATTTGGCACG 58.787 39.130 0.00 0.00 43.26 5.34
802 2116 6.334202 TGCGAAAAATTTACTGTTTGAACCT 58.666 32.000 0.00 0.00 0.00 3.50
5273 8835 1.002430 TGACATGCCCACTTCTCTCAC 59.998 52.381 0.00 0.00 0.00 3.51
5753 9418 3.346101 CGCCTGCGGGTAAAACAA 58.654 55.556 14.55 0.00 35.56 2.83
5996 9673 9.623350 CAATGTGTTCACAACATATATGACAAA 57.377 29.630 19.63 7.42 41.56 2.83
6095 9772 7.769507 TGCAAACATCACATGCCAATAATTTAT 59.230 29.630 0.00 0.00 39.31 1.40
6361 10038 9.448438 ACATAAAACAAGATATAGTGCTGTTGA 57.552 29.630 0.00 0.00 0.00 3.18
6393 10070 4.046286 TGTGGGAATTGGAGCTAAACAT 57.954 40.909 0.00 0.00 0.00 2.71
6401 10078 5.797051 ACATCAATTTTGTGGGAATTGGAG 58.203 37.500 9.03 5.61 42.14 3.86
6534 10213 9.840427 ATGCTGACATGTTATTAACAAAGTTAC 57.160 29.630 12.96 8.83 45.86 2.50
6587 10272 5.866633 CCATCTAGTGAACTGAGTTTGAGAC 59.133 44.000 0.00 0.00 0.00 3.36
6675 10365 2.489329 TCCTTGTTAGCAGCTTCATTGC 59.511 45.455 0.00 0.00 41.83 3.56
6676 10366 4.380233 CCTTCCTTGTTAGCAGCTTCATTG 60.380 45.833 0.00 0.00 0.00 2.82
6677 10367 3.760684 CCTTCCTTGTTAGCAGCTTCATT 59.239 43.478 0.00 0.00 0.00 2.57
6678 10368 3.009473 TCCTTCCTTGTTAGCAGCTTCAT 59.991 43.478 0.00 0.00 0.00 2.57
6679 10369 2.371841 TCCTTCCTTGTTAGCAGCTTCA 59.628 45.455 0.00 0.00 0.00 3.02
6680 10370 2.744741 GTCCTTCCTTGTTAGCAGCTTC 59.255 50.000 0.00 0.00 0.00 3.86
6681 10371 2.106511 TGTCCTTCCTTGTTAGCAGCTT 59.893 45.455 0.00 0.00 0.00 3.74
6682 10372 1.699634 TGTCCTTCCTTGTTAGCAGCT 59.300 47.619 0.00 0.00 0.00 4.24
6683 10373 2.185004 TGTCCTTCCTTGTTAGCAGC 57.815 50.000 0.00 0.00 0.00 5.25
6684 10374 3.999663 CTCTTGTCCTTCCTTGTTAGCAG 59.000 47.826 0.00 0.00 0.00 4.24
6685 10375 3.391296 ACTCTTGTCCTTCCTTGTTAGCA 59.609 43.478 0.00 0.00 0.00 3.49
6686 10376 3.997681 GACTCTTGTCCTTCCTTGTTAGC 59.002 47.826 0.00 0.00 37.24 3.09
6699 10389 2.234300 TTGTTGGACGGACTCTTGTC 57.766 50.000 0.00 0.00 42.22 3.18
6700 10390 2.368875 AGATTGTTGGACGGACTCTTGT 59.631 45.455 0.00 0.00 0.00 3.16
6701 10391 2.738846 CAGATTGTTGGACGGACTCTTG 59.261 50.000 0.00 0.00 0.00 3.02
6702 10392 2.632996 TCAGATTGTTGGACGGACTCTT 59.367 45.455 0.00 0.00 0.00 2.85
6703 10393 2.028930 GTCAGATTGTTGGACGGACTCT 60.029 50.000 0.00 0.00 0.00 3.24
6704 10394 2.288825 TGTCAGATTGTTGGACGGACTC 60.289 50.000 0.00 0.00 34.32 3.36
6705 10395 1.691976 TGTCAGATTGTTGGACGGACT 59.308 47.619 0.00 0.00 34.32 3.85
6706 10396 1.798813 GTGTCAGATTGTTGGACGGAC 59.201 52.381 0.00 0.00 34.32 4.79
6707 10397 1.691976 AGTGTCAGATTGTTGGACGGA 59.308 47.619 0.00 0.00 34.32 4.69
6708 10398 1.800586 CAGTGTCAGATTGTTGGACGG 59.199 52.381 0.00 0.00 34.32 4.79
6709 10399 1.195448 GCAGTGTCAGATTGTTGGACG 59.805 52.381 0.00 0.00 34.32 4.79
6710 10400 2.498167 AGCAGTGTCAGATTGTTGGAC 58.502 47.619 0.00 0.00 0.00 4.02
6711 10401 2.936919 AGCAGTGTCAGATTGTTGGA 57.063 45.000 0.00 0.00 0.00 3.53
6712 10402 4.756642 TCTTTAGCAGTGTCAGATTGTTGG 59.243 41.667 0.00 0.00 0.00 3.77
6713 10403 5.929697 TCTTTAGCAGTGTCAGATTGTTG 57.070 39.130 0.00 0.00 0.00 3.33
6714 10404 6.058183 ACTTCTTTAGCAGTGTCAGATTGTT 58.942 36.000 0.00 0.00 0.00 2.83
6715 10405 5.615289 ACTTCTTTAGCAGTGTCAGATTGT 58.385 37.500 0.00 0.00 0.00 2.71
6716 10406 6.870965 ACTACTTCTTTAGCAGTGTCAGATTG 59.129 38.462 0.00 0.00 28.99 2.67
6717 10407 6.998802 ACTACTTCTTTAGCAGTGTCAGATT 58.001 36.000 0.00 0.00 28.99 2.40
6718 10408 6.597832 ACTACTTCTTTAGCAGTGTCAGAT 57.402 37.500 0.00 0.00 28.99 2.90
6719 10409 6.349445 GCTACTACTTCTTTAGCAGTGTCAGA 60.349 42.308 0.00 0.00 38.50 3.27
6720 10410 5.802956 GCTACTACTTCTTTAGCAGTGTCAG 59.197 44.000 0.00 0.00 38.50 3.51
6721 10411 5.243060 TGCTACTACTTCTTTAGCAGTGTCA 59.757 40.000 0.00 0.00 42.55 3.58
6722 10412 5.573669 GTGCTACTACTTCTTTAGCAGTGTC 59.426 44.000 2.82 0.00 46.77 3.67
6723 10413 5.471257 GTGCTACTACTTCTTTAGCAGTGT 58.529 41.667 2.82 0.00 46.77 3.55
6724 10414 4.559251 CGTGCTACTACTTCTTTAGCAGTG 59.441 45.833 2.82 0.00 46.77 3.66
6725 10415 4.217983 ACGTGCTACTACTTCTTTAGCAGT 59.782 41.667 2.82 2.07 46.77 4.40
6726 10416 4.734917 ACGTGCTACTACTTCTTTAGCAG 58.265 43.478 2.82 1.54 46.77 4.24
6727 10417 4.778534 ACGTGCTACTACTTCTTTAGCA 57.221 40.909 0.00 0.00 44.64 3.49
6728 10418 6.237516 GCTAAACGTGCTACTACTTCTTTAGC 60.238 42.308 0.00 0.00 39.00 3.09
6729 10419 6.805271 TGCTAAACGTGCTACTACTTCTTTAG 59.195 38.462 0.00 0.00 0.00 1.85
6730 10420 6.583806 GTGCTAAACGTGCTACTACTTCTTTA 59.416 38.462 0.00 0.00 0.00 1.85
6731 10421 5.404667 GTGCTAAACGTGCTACTACTTCTTT 59.595 40.000 0.00 0.00 0.00 2.52
6732 10422 4.922103 GTGCTAAACGTGCTACTACTTCTT 59.078 41.667 0.00 0.00 0.00 2.52
6733 10423 4.022589 TGTGCTAAACGTGCTACTACTTCT 60.023 41.667 0.00 0.00 0.00 2.85
6734 10424 4.232221 TGTGCTAAACGTGCTACTACTTC 58.768 43.478 0.00 0.00 0.00 3.01
6735 10425 4.247267 TGTGCTAAACGTGCTACTACTT 57.753 40.909 0.00 0.00 0.00 2.24
6736 10426 3.928727 TGTGCTAAACGTGCTACTACT 57.071 42.857 0.00 0.00 0.00 2.57
6737 10427 4.682860 TCTTTGTGCTAAACGTGCTACTAC 59.317 41.667 0.00 0.00 0.00 2.73
6738 10428 4.873817 TCTTTGTGCTAAACGTGCTACTA 58.126 39.130 0.00 0.00 0.00 1.82
6739 10429 3.724374 TCTTTGTGCTAAACGTGCTACT 58.276 40.909 0.00 0.00 0.00 2.57
6740 10430 4.435651 GGATCTTTGTGCTAAACGTGCTAC 60.436 45.833 0.00 0.00 0.00 3.58
6741 10431 3.682858 GGATCTTTGTGCTAAACGTGCTA 59.317 43.478 0.00 0.00 0.00 3.49
6742 10432 2.484264 GGATCTTTGTGCTAAACGTGCT 59.516 45.455 0.00 0.00 0.00 4.40
6743 10433 2.724839 CGGATCTTTGTGCTAAACGTGC 60.725 50.000 0.00 0.00 0.00 5.34
6744 10434 2.724839 GCGGATCTTTGTGCTAAACGTG 60.725 50.000 0.00 0.00 0.00 4.49
6745 10435 1.463444 GCGGATCTTTGTGCTAAACGT 59.537 47.619 0.00 0.00 0.00 3.99
6746 10436 1.463056 TGCGGATCTTTGTGCTAAACG 59.537 47.619 0.00 0.00 0.00 3.60
6747 10437 2.742053 TCTGCGGATCTTTGTGCTAAAC 59.258 45.455 0.00 0.00 0.00 2.01
6748 10438 3.002791 CTCTGCGGATCTTTGTGCTAAA 58.997 45.455 0.00 0.00 0.00 1.85
6749 10439 2.621338 CTCTGCGGATCTTTGTGCTAA 58.379 47.619 0.00 0.00 0.00 3.09
6750 10440 1.740380 GCTCTGCGGATCTTTGTGCTA 60.740 52.381 0.00 0.00 0.00 3.49
6751 10441 1.023513 GCTCTGCGGATCTTTGTGCT 61.024 55.000 0.00 0.00 0.00 4.40
6752 10442 1.427020 GCTCTGCGGATCTTTGTGC 59.573 57.895 0.00 0.00 0.00 4.57
6753 10443 0.674581 TGGCTCTGCGGATCTTTGTG 60.675 55.000 0.00 0.00 0.00 3.33
6754 10444 0.254178 ATGGCTCTGCGGATCTTTGT 59.746 50.000 0.00 0.00 0.00 2.83
6755 10445 1.386533 AATGGCTCTGCGGATCTTTG 58.613 50.000 0.00 0.00 0.00 2.77
6756 10446 3.281727 TTAATGGCTCTGCGGATCTTT 57.718 42.857 0.00 0.00 0.00 2.52
6757 10447 3.209410 CTTTAATGGCTCTGCGGATCTT 58.791 45.455 0.00 0.00 0.00 2.40
6758 10448 2.171448 ACTTTAATGGCTCTGCGGATCT 59.829 45.455 0.00 0.00 0.00 2.75
6759 10449 2.565841 ACTTTAATGGCTCTGCGGATC 58.434 47.619 0.00 0.00 0.00 3.36
6760 10450 2.717639 ACTTTAATGGCTCTGCGGAT 57.282 45.000 0.00 0.00 0.00 4.18
6761 10451 3.466836 CATACTTTAATGGCTCTGCGGA 58.533 45.455 0.00 0.00 0.00 5.54
6762 10452 2.549754 CCATACTTTAATGGCTCTGCGG 59.450 50.000 0.00 0.00 40.07 5.69
6763 10453 2.549754 CCCATACTTTAATGGCTCTGCG 59.450 50.000 0.00 0.00 44.40 5.18
6764 10454 2.294512 GCCCATACTTTAATGGCTCTGC 59.705 50.000 0.00 0.00 44.40 4.26
6765 10455 3.554934 TGCCCATACTTTAATGGCTCTG 58.445 45.455 0.00 0.00 44.40 3.35
6766 10456 3.203040 ACTGCCCATACTTTAATGGCTCT 59.797 43.478 0.00 0.00 44.40 4.09
6767 10457 3.555966 ACTGCCCATACTTTAATGGCTC 58.444 45.455 0.00 0.00 44.40 4.70
6768 10458 3.669939 ACTGCCCATACTTTAATGGCT 57.330 42.857 0.00 0.00 44.40 4.75
6769 10459 4.461198 AGTACTGCCCATACTTTAATGGC 58.539 43.478 0.00 0.00 44.40 4.40
6770 10460 5.760253 CAGAGTACTGCCCATACTTTAATGG 59.240 44.000 0.00 0.00 39.50 3.16
6771 10461 6.851222 CAGAGTACTGCCCATACTTTAATG 57.149 41.667 0.00 0.00 37.33 1.90
6802 10492 4.676586 CAAACGTTCCGCCGGTGC 62.677 66.667 10.27 0.00 0.00 5.01
6803 10493 4.020378 CCAAACGTTCCGCCGGTG 62.020 66.667 8.42 8.42 0.00 4.94
6810 10500 3.359523 GACCGGCCCAAACGTTCC 61.360 66.667 0.00 0.00 0.00 3.62
6811 10501 1.726533 TTTGACCGGCCCAAACGTTC 61.727 55.000 15.95 0.00 0.00 3.95
6812 10502 1.753463 TTTGACCGGCCCAAACGTT 60.753 52.632 15.95 0.00 0.00 3.99
6813 10503 2.124236 TTTGACCGGCCCAAACGT 60.124 55.556 15.95 0.00 0.00 3.99
6814 10504 2.333581 GTTTGACCGGCCCAAACG 59.666 61.111 26.68 0.00 42.32 3.60
6816 10506 1.830408 CTGGTTTGACCGGCCCAAA 60.830 57.895 15.95 15.95 42.58 3.28
6817 10507 2.203422 CTGGTTTGACCGGCCCAA 60.203 61.111 0.00 3.03 42.58 4.12
6818 10508 3.172106 TCTGGTTTGACCGGCCCA 61.172 61.111 0.00 0.00 44.40 5.36
6819 10509 2.359975 CTCTGGTTTGACCGGCCC 60.360 66.667 0.00 0.00 44.40 5.80
6820 10510 3.056328 GCTCTGGTTTGACCGGCC 61.056 66.667 0.00 0.00 44.40 6.13
6821 10511 3.056328 GGCTCTGGTTTGACCGGC 61.056 66.667 0.00 0.00 44.40 6.13
6822 10512 2.742372 CGGCTCTGGTTTGACCGG 60.742 66.667 0.00 0.00 46.14 5.28
6823 10513 2.501223 TAGCGGCTCTGGTTTGACCG 62.501 60.000 5.39 0.00 42.58 4.79
6824 10514 0.741221 CTAGCGGCTCTGGTTTGACC 60.741 60.000 5.39 0.00 39.22 4.02
6825 10515 0.246635 TCTAGCGGCTCTGGTTTGAC 59.753 55.000 5.39 0.00 0.00 3.18
6826 10516 1.137086 GATCTAGCGGCTCTGGTTTGA 59.863 52.381 5.39 0.00 0.00 2.69
6827 10517 1.137872 AGATCTAGCGGCTCTGGTTTG 59.862 52.381 5.39 0.00 0.00 2.93
6828 10518 1.137872 CAGATCTAGCGGCTCTGGTTT 59.862 52.381 5.39 0.00 34.17 3.27
6829 10519 0.749649 CAGATCTAGCGGCTCTGGTT 59.250 55.000 5.39 0.00 34.17 3.67
6830 10520 2.424474 CAGATCTAGCGGCTCTGGT 58.576 57.895 5.39 0.00 34.17 4.00
6832 10522 0.313672 GTCCAGATCTAGCGGCTCTG 59.686 60.000 5.39 7.92 36.89 3.35
6833 10523 1.169661 CGTCCAGATCTAGCGGCTCT 61.170 60.000 5.39 0.00 0.00 4.09
6834 10524 1.284408 CGTCCAGATCTAGCGGCTC 59.716 63.158 5.39 0.00 0.00 4.70
6835 10525 2.851071 GCGTCCAGATCTAGCGGCT 61.851 63.158 7.98 7.98 0.00 5.52
6836 10526 2.355244 GCGTCCAGATCTAGCGGC 60.355 66.667 12.51 0.00 0.00 6.53
6837 10527 2.050895 CGCGTCCAGATCTAGCGG 60.051 66.667 19.57 8.32 46.06 5.52
6839 10529 2.114331 TACGCGCGTCCAGATCTAGC 62.114 60.000 41.35 0.00 0.00 3.42
6840 10530 0.306840 TTACGCGCGTCCAGATCTAG 59.693 55.000 41.35 3.36 0.00 2.43
6841 10531 0.028505 GTTACGCGCGTCCAGATCTA 59.971 55.000 41.35 17.26 0.00 1.98
6842 10532 1.226603 GTTACGCGCGTCCAGATCT 60.227 57.895 41.35 15.35 0.00 2.75
6843 10533 2.228914 GGTTACGCGCGTCCAGATC 61.229 63.158 41.35 20.16 0.00 2.75
6844 10534 2.202703 GGTTACGCGCGTCCAGAT 60.203 61.111 41.35 17.08 0.00 2.90
6845 10535 4.764336 CGGTTACGCGCGTCCAGA 62.764 66.667 41.35 20.38 0.00 3.86
6847 10537 3.260783 TAACGGTTACGCGCGTCCA 62.261 57.895 41.35 24.96 46.04 4.02
6848 10538 2.499603 CTAACGGTTACGCGCGTCC 61.500 63.158 41.35 32.52 46.04 4.79
6849 10539 0.863119 ATCTAACGGTTACGCGCGTC 60.863 55.000 41.35 26.08 46.04 5.19
6850 10540 0.456653 AATCTAACGGTTACGCGCGT 60.457 50.000 39.05 39.05 46.04 6.01
6851 10541 0.641783 AAATCTAACGGTTACGCGCG 59.358 50.000 30.96 30.96 46.04 6.86
6852 10542 1.849348 GCAAATCTAACGGTTACGCGC 60.849 52.381 5.73 0.00 46.04 6.86
6853 10543 1.267186 GGCAAATCTAACGGTTACGCG 60.267 52.381 3.53 3.53 46.04 6.01
6854 10544 1.063027 GGGCAAATCTAACGGTTACGC 59.937 52.381 0.00 0.00 46.04 4.42
6856 10546 1.667212 CGGGGCAAATCTAACGGTTAC 59.333 52.381 0.00 0.00 0.00 2.50
6857 10547 2.013058 GCGGGGCAAATCTAACGGTTA 61.013 52.381 0.00 0.00 0.00 2.85
6858 10548 1.310216 GCGGGGCAAATCTAACGGTT 61.310 55.000 0.00 0.00 0.00 4.44
6859 10549 1.747745 GCGGGGCAAATCTAACGGT 60.748 57.895 0.00 0.00 0.00 4.83
6860 10550 1.101049 ATGCGGGGCAAATCTAACGG 61.101 55.000 0.00 0.00 43.62 4.44
6861 10551 0.307760 GATGCGGGGCAAATCTAACG 59.692 55.000 0.00 0.00 43.62 3.18
6862 10552 1.680338 AGATGCGGGGCAAATCTAAC 58.320 50.000 0.00 0.00 43.62 2.34
6863 10553 2.092429 AGAAGATGCGGGGCAAATCTAA 60.092 45.455 0.00 0.00 43.62 2.10
6864 10554 1.490490 AGAAGATGCGGGGCAAATCTA 59.510 47.619 0.00 0.00 43.62 1.98
6865 10555 0.257039 AGAAGATGCGGGGCAAATCT 59.743 50.000 0.00 0.00 43.62 2.40
6866 10556 1.967319 TAGAAGATGCGGGGCAAATC 58.033 50.000 0.00 0.00 43.62 2.17
6867 10557 2.508526 GATAGAAGATGCGGGGCAAAT 58.491 47.619 0.00 0.00 43.62 2.32
6868 10558 1.810031 CGATAGAAGATGCGGGGCAAA 60.810 52.381 0.00 0.00 40.04 3.68
6869 10559 0.249868 CGATAGAAGATGCGGGGCAA 60.250 55.000 0.00 0.00 40.04 4.52
6870 10560 1.367471 CGATAGAAGATGCGGGGCA 59.633 57.895 0.00 0.00 40.82 5.36
6871 10561 0.667792 GACGATAGAAGATGCGGGGC 60.668 60.000 0.00 0.00 41.38 5.80
6872 10562 0.673985 TGACGATAGAAGATGCGGGG 59.326 55.000 0.00 0.00 41.38 5.73
6873 10563 2.600731 GATGACGATAGAAGATGCGGG 58.399 52.381 0.00 0.00 41.38 6.13
6874 10564 2.230025 AGGATGACGATAGAAGATGCGG 59.770 50.000 0.00 0.00 41.38 5.69
6875 10565 3.497118 GAGGATGACGATAGAAGATGCG 58.503 50.000 0.00 0.00 41.38 4.73
6876 10566 3.367910 GGGAGGATGACGATAGAAGATGC 60.368 52.174 0.00 0.00 41.38 3.91
6877 10567 3.194542 GGGGAGGATGACGATAGAAGATG 59.805 52.174 0.00 0.00 41.38 2.90
6878 10568 3.436243 GGGGAGGATGACGATAGAAGAT 58.564 50.000 0.00 0.00 41.38 2.40
6879 10569 2.491086 GGGGGAGGATGACGATAGAAGA 60.491 54.545 0.00 0.00 41.38 2.87
6880 10570 1.896465 GGGGGAGGATGACGATAGAAG 59.104 57.143 0.00 0.00 41.38 2.85
6881 10571 1.219469 TGGGGGAGGATGACGATAGAA 59.781 52.381 0.00 0.00 41.38 2.10
6882 10572 0.857675 TGGGGGAGGATGACGATAGA 59.142 55.000 0.00 0.00 41.38 1.98
6883 10573 0.969894 GTGGGGGAGGATGACGATAG 59.030 60.000 0.00 0.00 46.19 2.08
6884 10574 0.826256 CGTGGGGGAGGATGACGATA 60.826 60.000 0.00 0.00 31.71 2.92
6885 10575 2.134287 CGTGGGGGAGGATGACGAT 61.134 63.158 0.00 0.00 31.71 3.73
6886 10576 2.758327 CGTGGGGGAGGATGACGA 60.758 66.667 0.00 0.00 31.71 4.20
6887 10577 3.849951 CCGTGGGGGAGGATGACG 61.850 72.222 0.00 0.00 38.47 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.