Multiple sequence alignment - TraesCS7A01G549900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G549900 chr7A 100.000 3836 0 0 1 3836 724111847 724115682 0.000000e+00 7084.0
1 TraesCS7A01G549900 chr7A 90.167 2034 108 43 1196 3193 724084605 724086582 0.000000e+00 2564.0
2 TraesCS7A01G549900 chr7A 88.164 414 34 7 803 1201 724083026 724083439 2.680000e-131 479.0
3 TraesCS7A01G549900 chr7A 89.902 307 30 1 3530 3835 81606179 81606485 9.990000e-106 394.0
4 TraesCS7A01G549900 chr7A 92.500 200 15 0 3188 3387 724086657 724086856 1.740000e-73 287.0
5 TraesCS7A01G549900 chr7A 86.617 269 24 8 2602 2859 724089949 724090216 1.740000e-73 287.0
6 TraesCS7A01G549900 chr7A 77.163 289 39 16 199 468 714664284 714664004 3.990000e-30 143.0
7 TraesCS7A01G549900 chr7A 87.705 122 10 4 3388 3508 81606007 81606124 1.860000e-28 137.0
8 TraesCS7A01G549900 chrUn 96.179 916 27 5 1196 2110 92718875 92719783 0.000000e+00 1491.0
9 TraesCS7A01G549900 chrUn 88.798 973 65 20 2246 3191 92719834 92720789 0.000000e+00 1153.0
10 TraesCS7A01G549900 chrUn 87.332 371 32 7 842 1201 92717260 92717626 9.920000e-111 411.0
11 TraesCS7A01G549900 chrUn 93.939 198 12 0 3188 3385 92720872 92721069 2.240000e-77 300.0
12 TraesCS7A01G549900 chr7B 95.425 918 33 7 1196 2110 730151908 730152819 0.000000e+00 1454.0
13 TraesCS7A01G549900 chr7B 90.205 878 73 10 2206 3073 730152835 730153709 0.000000e+00 1133.0
14 TraesCS7A01G549900 chr7B 85.542 415 33 10 803 1190 730150443 730150857 3.570000e-110 409.0
15 TraesCS7A01G549900 chr7B 95.000 200 10 0 3188 3387 730153893 730154092 8.000000e-82 315.0
16 TraesCS7A01G549900 chr7B 80.592 304 19 19 2691 2988 730155278 730155547 8.410000e-47 198.0
17 TraesCS7A01G549900 chr7B 81.437 167 21 6 159 323 735276156 735275998 1.120000e-25 128.0
18 TraesCS7A01G549900 chr7B 79.058 191 29 7 233 416 735004271 735004085 1.870000e-23 121.0
19 TraesCS7A01G549900 chr5A 98.013 453 7 2 3385 3836 487271693 487272144 0.000000e+00 785.0
20 TraesCS7A01G549900 chr5A 99.367 158 1 0 1 158 624962779 624962936 1.740000e-73 287.0
21 TraesCS7A01G549900 chr5A 92.982 171 12 0 3194 3364 636636237 636636067 2.290000e-62 250.0
22 TraesCS7A01G549900 chr5A 89.231 195 17 4 3191 3382 636631750 636631557 1.380000e-59 241.0
23 TraesCS7A01G549900 chr2A 87.097 465 41 7 3387 3835 745005835 745006296 3.420000e-140 508.0
24 TraesCS7A01G549900 chr2A 89.902 307 30 1 3530 3835 277160043 277160349 9.990000e-106 394.0
25 TraesCS7A01G549900 chr2A 89.686 223 22 1 3555 3777 667688439 667688218 2.260000e-72 283.0
26 TraesCS7A01G549900 chr2A 91.200 125 10 1 3388 3511 667688946 667688822 6.590000e-38 169.0
27 TraesCS7A01G549900 chr2A 88.618 123 9 4 3387 3508 277159871 277159989 1.110000e-30 145.0
28 TraesCS7A01G549900 chr1B 85.570 395 41 6 3391 3771 578545580 578545188 2.150000e-107 399.0
29 TraesCS7A01G549900 chr6A 89.251 307 32 1 3530 3835 109778576 109778882 2.160000e-102 383.0
30 TraesCS7A01G549900 chr6A 98.734 158 2 0 1 158 40647444 40647601 8.110000e-72 281.0
31 TraesCS7A01G549900 chr6A 88.525 122 9 4 3388 3508 109778404 109778521 3.990000e-30 143.0
32 TraesCS7A01G549900 chr6A 89.362 47 0 3 3144 3188 22190597 22190640 2.000000e-03 54.7
33 TraesCS7A01G549900 chr3A 100.000 158 0 0 1 158 42792290 42792447 3.750000e-75 292.0
34 TraesCS7A01G549900 chr4A 98.734 158 2 0 1 158 591564358 591564515 8.110000e-72 281.0
35 TraesCS7A01G549900 chr4A 98.734 158 2 0 1 158 592478915 592478758 8.110000e-72 281.0
36 TraesCS7A01G549900 chr4A 97.468 158 4 0 1 158 592757722 592757565 1.760000e-68 270.0
37 TraesCS7A01G549900 chr4A 96.835 158 5 0 1 158 593045801 593045644 8.170000e-67 265.0
38 TraesCS7A01G549900 chr4A 92.697 178 13 0 3188 3365 675802173 675802350 1.370000e-64 257.0
39 TraesCS7A01G549900 chr4A 92.857 126 7 2 3388 3511 621003065 621002940 8.470000e-42 182.0
40 TraesCS7A01G549900 chr4A 100.000 42 0 0 3151 3192 712854647 712854606 1.140000e-10 78.7
41 TraesCS7A01G549900 chr4A 95.238 42 2 0 3149 3190 32088352 32088393 2.470000e-07 67.6
42 TraesCS7A01G549900 chr3B 98.734 158 2 0 1 158 462492969 462492812 8.110000e-72 281.0
43 TraesCS7A01G549900 chr2B 98.734 158 2 0 1 158 772256149 772256306 8.110000e-72 281.0
44 TraesCS7A01G549900 chr2B 88.940 217 17 4 3624 3835 761683397 761683611 1.060000e-65 261.0
45 TraesCS7A01G549900 chr2B 89.423 208 17 3 3633 3835 761627295 761627502 1.370000e-64 257.0
46 TraesCS7A01G549900 chr2B 82.558 258 24 14 3389 3627 761616461 761616716 1.400000e-49 207.0
47 TraesCS7A01G549900 chr2B 81.712 257 27 12 3389 3627 761559934 761560188 3.020000e-46 196.0
48 TraesCS7A01G549900 chr2B 81.712 257 27 13 3389 3627 761672497 761672751 3.020000e-46 196.0
49 TraesCS7A01G549900 chr5B 92.179 179 12 2 3188 3365 516065144 516065321 6.360000e-63 252.0
50 TraesCS7A01G549900 chr5B 86.099 223 20 10 3191 3408 640128871 640128655 2.980000e-56 230.0
51 TraesCS7A01G549900 chr5D 89.231 195 17 4 3191 3382 509430303 509430110 1.380000e-59 241.0
52 TraesCS7A01G549900 chr6B 83.550 231 27 8 3140 3368 37046468 37046247 5.020000e-49 206.0
53 TraesCS7A01G549900 chr6B 88.889 54 4 1 3140 3191 46677083 46677030 8.900000e-07 65.8
54 TraesCS7A01G549900 chr7D 86.395 147 16 4 159 301 620254891 620255037 1.430000e-34 158.0
55 TraesCS7A01G549900 chr6D 93.878 49 1 2 3144 3190 23636728 23636776 5.320000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G549900 chr7A 724111847 724115682 3835 False 7084.00 7084 100.0000 1 3836 1 chr7A.!!$F1 3835
1 TraesCS7A01G549900 chr7A 724083026 724090216 7190 False 904.25 2564 89.3620 803 3387 4 chr7A.!!$F3 2584
2 TraesCS7A01G549900 chrUn 92717260 92721069 3809 False 838.75 1491 91.5620 842 3385 4 chrUn.!!$F1 2543
3 TraesCS7A01G549900 chr7B 730150443 730155547 5104 False 701.80 1454 89.3528 803 3387 5 chr7B.!!$F1 2584
4 TraesCS7A01G549900 chr2A 667688218 667688946 728 True 226.00 283 90.4430 3388 3777 2 chr2A.!!$R1 389

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
116 117 0.032952 GGTTTCCTTTTTCGGGTGGC 59.967 55.0 0.0 0.0 0.0 5.01 F
117 118 0.032952 GTTTCCTTTTTCGGGTGGCC 59.967 55.0 0.0 0.0 0.0 5.36 F
163 164 0.036294 GCCGCCCACTAGACTTTCTT 60.036 55.0 0.0 0.0 0.0 2.52 F
1010 1025 0.181114 GTCACTGCCATGCCATAGGA 59.819 55.0 0.0 0.0 0.0 2.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1095 1119 0.324738 AGGAGCCTCCAATCGTCTCA 60.325 55.0 14.46 0.0 39.61 3.27 R
1291 2600 0.396435 TGTGCCTGTAGTTGAGTGGG 59.604 55.0 0.00 0.0 0.00 4.61 R
1896 3206 1.041447 ATGCAAGCAGAAGGGGATGC 61.041 55.0 0.00 0.0 42.87 3.91 R
2886 4234 0.034863 ACCGGTTCACAACACCAACT 60.035 50.0 0.00 0.0 33.36 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 2.801388 GCAGTTGCCTTTTTCGCTC 58.199 52.632 0.00 0.00 34.31 5.03
22 23 0.664466 GCAGTTGCCTTTTTCGCTCC 60.664 55.000 0.00 0.00 34.31 4.70
23 24 0.385974 CAGTTGCCTTTTTCGCTCCG 60.386 55.000 0.00 0.00 0.00 4.63
24 25 0.534203 AGTTGCCTTTTTCGCTCCGA 60.534 50.000 0.00 0.00 0.00 4.55
25 26 0.385598 GTTGCCTTTTTCGCTCCGAC 60.386 55.000 0.00 0.00 34.89 4.79
26 27 1.837538 TTGCCTTTTTCGCTCCGACG 61.838 55.000 0.00 0.00 34.89 5.12
27 28 3.023591 GCCTTTTTCGCTCCGACGG 62.024 63.158 7.84 7.84 34.89 4.79
28 29 2.388232 CCTTTTTCGCTCCGACGGG 61.388 63.158 15.25 6.01 34.89 5.28
29 30 3.023591 CTTTTTCGCTCCGACGGGC 62.024 63.158 15.25 15.11 34.89 6.13
49 50 3.239253 GGACCAGGTGGACCACGT 61.239 66.667 18.40 16.27 46.96 4.49
50 51 2.030562 GACCAGGTGGACCACGTG 59.969 66.667 31.57 31.57 45.90 4.49
69 70 4.699522 GCGAGCGGGGGACTGTTT 62.700 66.667 0.00 0.00 39.64 2.83
70 71 2.434359 CGAGCGGGGGACTGTTTC 60.434 66.667 0.00 0.00 39.64 2.78
71 72 2.046217 GAGCGGGGGACTGTTTCC 60.046 66.667 0.00 0.00 45.00 3.13
72 73 2.529389 AGCGGGGGACTGTTTCCT 60.529 61.111 2.09 0.00 45.09 3.36
73 74 2.046217 GCGGGGGACTGTTTCCTC 60.046 66.667 2.09 0.00 45.81 3.71
74 75 2.593956 GCGGGGGACTGTTTCCTCT 61.594 63.158 0.00 0.00 45.81 3.69
75 76 2.067197 CGGGGGACTGTTTCCTCTT 58.933 57.895 0.00 0.00 45.81 2.85
76 77 0.400594 CGGGGGACTGTTTCCTCTTT 59.599 55.000 0.00 0.00 45.81 2.52
77 78 1.610886 CGGGGGACTGTTTCCTCTTTC 60.611 57.143 0.00 0.00 45.81 2.62
78 79 1.610886 GGGGGACTGTTTCCTCTTTCG 60.611 57.143 0.00 0.00 45.81 3.46
79 80 1.157585 GGGACTGTTTCCTCTTTCGC 58.842 55.000 0.00 0.00 45.09 4.70
80 81 1.270893 GGGACTGTTTCCTCTTTCGCT 60.271 52.381 0.00 0.00 45.09 4.93
81 82 2.070028 GGACTGTTTCCTCTTTCGCTC 58.930 52.381 0.00 0.00 41.95 5.03
82 83 1.721926 GACTGTTTCCTCTTTCGCTCG 59.278 52.381 0.00 0.00 0.00 5.03
83 84 1.340248 ACTGTTTCCTCTTTCGCTCGA 59.660 47.619 0.00 0.00 0.00 4.04
84 85 1.989165 CTGTTTCCTCTTTCGCTCGAG 59.011 52.381 8.45 8.45 0.00 4.04
85 86 1.336887 TGTTTCCTCTTTCGCTCGAGG 60.337 52.381 15.58 4.50 46.52 4.63
86 87 0.246635 TTTCCTCTTTCGCTCGAGGG 59.753 55.000 22.60 22.60 45.46 4.30
87 88 1.605058 TTCCTCTTTCGCTCGAGGGG 61.605 60.000 27.01 12.96 45.46 4.79
88 89 2.496817 CTCTTTCGCTCGAGGGGG 59.503 66.667 27.01 17.52 0.00 5.40
110 111 2.793278 CCAGGTGGTTTCCTTTTTCG 57.207 50.000 0.00 0.00 35.37 3.46
111 112 1.339929 CCAGGTGGTTTCCTTTTTCGG 59.660 52.381 0.00 0.00 35.37 4.30
112 113 1.339929 CAGGTGGTTTCCTTTTTCGGG 59.660 52.381 0.00 0.00 35.37 5.14
113 114 1.063492 AGGTGGTTTCCTTTTTCGGGT 60.063 47.619 0.00 0.00 33.52 5.28
114 115 1.067974 GGTGGTTTCCTTTTTCGGGTG 59.932 52.381 0.00 0.00 0.00 4.61
115 116 1.067974 GTGGTTTCCTTTTTCGGGTGG 59.932 52.381 0.00 0.00 0.00 4.61
116 117 0.032952 GGTTTCCTTTTTCGGGTGGC 59.967 55.000 0.00 0.00 0.00 5.01
117 118 0.032952 GTTTCCTTTTTCGGGTGGCC 59.967 55.000 0.00 0.00 0.00 5.36
118 119 1.457009 TTTCCTTTTTCGGGTGGCCG 61.457 55.000 0.00 0.00 0.00 6.13
119 120 4.050934 CCTTTTTCGGGTGGCCGC 62.051 66.667 8.12 8.12 0.00 6.53
120 121 2.983592 CTTTTTCGGGTGGCCGCT 60.984 61.111 17.49 0.00 0.00 5.52
121 122 3.267597 CTTTTTCGGGTGGCCGCTG 62.268 63.158 17.49 9.53 0.00 5.18
135 136 2.030262 GCTGGCTAGCGATCCCAG 59.970 66.667 6.22 14.08 46.95 4.45
136 137 2.739784 CTGGCTAGCGATCCCAGG 59.260 66.667 9.00 0.00 41.87 4.45
137 138 2.844362 TGGCTAGCGATCCCAGGG 60.844 66.667 9.00 0.00 0.00 4.45
138 139 4.321966 GGCTAGCGATCCCAGGGC 62.322 72.222 9.00 0.00 0.00 5.19
139 140 4.671569 GCTAGCGATCCCAGGGCG 62.672 72.222 0.00 0.00 0.00 6.13
140 141 3.996124 CTAGCGATCCCAGGGCGG 61.996 72.222 0.00 0.00 0.00 6.13
159 160 3.771160 CGGCCGCCCACTAGACTT 61.771 66.667 14.67 0.00 0.00 3.01
160 161 2.669240 GGCCGCCCACTAGACTTT 59.331 61.111 0.00 0.00 0.00 2.66
161 162 1.449778 GGCCGCCCACTAGACTTTC 60.450 63.158 0.00 0.00 0.00 2.62
162 163 1.597461 GCCGCCCACTAGACTTTCT 59.403 57.895 0.00 0.00 0.00 2.52
163 164 0.036294 GCCGCCCACTAGACTTTCTT 60.036 55.000 0.00 0.00 0.00 2.52
164 165 1.610886 GCCGCCCACTAGACTTTCTTT 60.611 52.381 0.00 0.00 0.00 2.52
165 166 2.779506 CCGCCCACTAGACTTTCTTTT 58.220 47.619 0.00 0.00 0.00 2.27
166 167 3.867216 GCCGCCCACTAGACTTTCTTTTA 60.867 47.826 0.00 0.00 0.00 1.52
167 168 4.514401 CCGCCCACTAGACTTTCTTTTAT 58.486 43.478 0.00 0.00 0.00 1.40
168 169 4.941873 CCGCCCACTAGACTTTCTTTTATT 59.058 41.667 0.00 0.00 0.00 1.40
169 170 6.110707 CCGCCCACTAGACTTTCTTTTATTA 58.889 40.000 0.00 0.00 0.00 0.98
170 171 6.036844 CCGCCCACTAGACTTTCTTTTATTAC 59.963 42.308 0.00 0.00 0.00 1.89
171 172 6.817140 CGCCCACTAGACTTTCTTTTATTACT 59.183 38.462 0.00 0.00 0.00 2.24
172 173 7.010275 CGCCCACTAGACTTTCTTTTATTACTC 59.990 40.741 0.00 0.00 0.00 2.59
173 174 8.041919 GCCCACTAGACTTTCTTTTATTACTCT 58.958 37.037 0.00 0.00 0.00 3.24
174 175 9.945904 CCCACTAGACTTTCTTTTATTACTCTT 57.054 33.333 0.00 0.00 0.00 2.85
224 225 7.793948 TTTTCCTTCTTACTACTCTAAGGCT 57.206 36.000 0.00 0.00 37.27 4.58
225 226 7.407393 TTTCCTTCTTACTACTCTAAGGCTC 57.593 40.000 0.00 0.00 37.27 4.70
226 227 6.075949 TCCTTCTTACTACTCTAAGGCTCA 57.924 41.667 0.00 0.00 37.27 4.26
227 228 6.674573 TCCTTCTTACTACTCTAAGGCTCAT 58.325 40.000 0.00 0.00 37.27 2.90
228 229 7.813331 TCCTTCTTACTACTCTAAGGCTCATA 58.187 38.462 0.00 0.00 37.27 2.15
229 230 8.449625 TCCTTCTTACTACTCTAAGGCTCATAT 58.550 37.037 0.00 0.00 37.27 1.78
230 231 9.742144 CCTTCTTACTACTCTAAGGCTCATATA 57.258 37.037 0.00 0.00 31.04 0.86
246 247 9.759473 AGGCTCATATATTAATATTTTGCAGGT 57.241 29.630 13.09 1.35 0.00 4.00
271 272 3.988379 CAACAGGTGCACATGTAAAGT 57.012 42.857 34.50 18.32 40.26 2.66
273 274 5.627499 CAACAGGTGCACATGTAAAGTAT 57.373 39.130 34.50 17.20 40.26 2.12
274 275 6.735678 CAACAGGTGCACATGTAAAGTATA 57.264 37.500 34.50 0.00 40.26 1.47
275 276 7.139896 CAACAGGTGCACATGTAAAGTATAA 57.860 36.000 34.50 0.00 40.26 0.98
276 277 7.589395 CAACAGGTGCACATGTAAAGTATAAA 58.411 34.615 34.50 0.00 40.26 1.40
277 278 7.753309 ACAGGTGCACATGTAAAGTATAAAA 57.247 32.000 33.64 0.00 39.28 1.52
278 279 8.348285 ACAGGTGCACATGTAAAGTATAAAAT 57.652 30.769 33.64 5.97 39.28 1.82
279 280 9.456147 ACAGGTGCACATGTAAAGTATAAAATA 57.544 29.630 33.64 0.00 39.28 1.40
398 399 9.476928 ACTCTATTTTACTACTCTAAGGCTCAA 57.523 33.333 0.00 0.00 0.00 3.02
415 416 8.937634 AAGGCTCAAAATCTAATAATTTGCAG 57.062 30.769 0.00 0.00 34.77 4.41
416 417 7.495055 AGGCTCAAAATCTAATAATTTGCAGG 58.505 34.615 0.00 0.00 34.77 4.85
417 418 7.124750 AGGCTCAAAATCTAATAATTTGCAGGT 59.875 33.333 0.00 0.00 34.77 4.00
418 419 7.765819 GGCTCAAAATCTAATAATTTGCAGGTT 59.234 33.333 0.00 0.00 34.77 3.50
419 420 8.598075 GCTCAAAATCTAATAATTTGCAGGTTG 58.402 33.333 0.00 0.00 34.77 3.77
420 421 9.643693 CTCAAAATCTAATAATTTGCAGGTTGT 57.356 29.630 0.00 0.00 34.77 3.32
421 422 9.421806 TCAAAATCTAATAATTTGCAGGTTGTG 57.578 29.630 0.00 0.00 34.77 3.33
446 447 7.609760 CAATAGGTGCACATGTAAAGTCTAA 57.390 36.000 20.43 0.00 0.00 2.10
447 448 8.039603 CAATAGGTGCACATGTAAAGTCTAAA 57.960 34.615 20.43 0.00 0.00 1.85
448 449 8.511321 CAATAGGTGCACATGTAAAGTCTAAAA 58.489 33.333 20.43 0.00 0.00 1.52
449 450 8.807948 ATAGGTGCACATGTAAAGTCTAAAAT 57.192 30.769 20.43 0.00 0.00 1.82
450 451 9.899661 ATAGGTGCACATGTAAAGTCTAAAATA 57.100 29.630 20.43 0.00 0.00 1.40
451 452 8.630054 AGGTGCACATGTAAAGTCTAAAATAA 57.370 30.769 20.43 0.00 0.00 1.40
452 453 9.073475 AGGTGCACATGTAAAGTCTAAAATAAA 57.927 29.630 20.43 0.00 0.00 1.40
453 454 9.685828 GGTGCACATGTAAAGTCTAAAATAAAA 57.314 29.630 20.43 0.00 0.00 1.52
493 494 9.533253 AAATAAACTGAGAAAAGAATGTTGGTG 57.467 29.630 0.00 0.00 0.00 4.17
494 495 5.520376 AACTGAGAAAAGAATGTTGGTGG 57.480 39.130 0.00 0.00 0.00 4.61
495 496 3.319122 ACTGAGAAAAGAATGTTGGTGGC 59.681 43.478 0.00 0.00 0.00 5.01
496 497 2.627699 TGAGAAAAGAATGTTGGTGGCC 59.372 45.455 0.00 0.00 0.00 5.36
497 498 2.627699 GAGAAAAGAATGTTGGTGGCCA 59.372 45.455 0.00 0.00 0.00 5.36
498 499 2.629617 AGAAAAGAATGTTGGTGGCCAG 59.370 45.455 5.11 0.00 33.81 4.85
499 500 0.681175 AAAGAATGTTGGTGGCCAGC 59.319 50.000 28.15 28.15 33.81 4.85
500 501 1.187567 AAGAATGTTGGTGGCCAGCC 61.188 55.000 31.12 22.50 33.72 4.85
501 502 2.990967 AATGTTGGTGGCCAGCCG 60.991 61.111 31.12 0.00 39.42 5.52
502 503 3.505790 AATGTTGGTGGCCAGCCGA 62.506 57.895 31.12 19.52 39.42 5.54
503 504 3.925630 ATGTTGGTGGCCAGCCGAG 62.926 63.158 31.12 0.00 39.42 4.63
504 505 4.643387 GTTGGTGGCCAGCCGAGT 62.643 66.667 31.12 0.00 39.42 4.18
505 506 3.884774 TTGGTGGCCAGCCGAGTT 61.885 61.111 31.12 0.00 39.42 3.01
506 507 4.641645 TGGTGGCCAGCCGAGTTG 62.642 66.667 31.12 0.00 39.42 3.16
507 508 4.329545 GGTGGCCAGCCGAGTTGA 62.330 66.667 24.79 0.00 39.42 3.18
508 509 2.743928 GTGGCCAGCCGAGTTGAG 60.744 66.667 5.11 0.00 39.42 3.02
509 510 2.922503 TGGCCAGCCGAGTTGAGA 60.923 61.111 0.00 0.00 39.42 3.27
510 511 2.347490 GGCCAGCCGAGTTGAGAA 59.653 61.111 0.00 0.00 0.00 2.87
511 512 1.302511 GGCCAGCCGAGTTGAGAAA 60.303 57.895 0.00 0.00 0.00 2.52
512 513 0.889186 GGCCAGCCGAGTTGAGAAAA 60.889 55.000 0.00 0.00 0.00 2.29
513 514 0.519077 GCCAGCCGAGTTGAGAAAAG 59.481 55.000 0.00 0.00 0.00 2.27
514 515 1.878102 GCCAGCCGAGTTGAGAAAAGA 60.878 52.381 0.00 0.00 0.00 2.52
515 516 2.494059 CCAGCCGAGTTGAGAAAAGAA 58.506 47.619 0.00 0.00 0.00 2.52
516 517 3.077359 CCAGCCGAGTTGAGAAAAGAAT 58.923 45.455 0.00 0.00 0.00 2.40
517 518 3.120060 CCAGCCGAGTTGAGAAAAGAATG 60.120 47.826 0.00 0.00 0.00 2.67
518 519 3.499918 CAGCCGAGTTGAGAAAAGAATGT 59.500 43.478 0.00 0.00 0.00 2.71
519 520 4.690748 CAGCCGAGTTGAGAAAAGAATGTA 59.309 41.667 0.00 0.00 0.00 2.29
520 521 5.352569 CAGCCGAGTTGAGAAAAGAATGTAT 59.647 40.000 0.00 0.00 0.00 2.29
521 522 5.582665 AGCCGAGTTGAGAAAAGAATGTATC 59.417 40.000 0.00 0.00 0.00 2.24
522 523 5.220681 GCCGAGTTGAGAAAAGAATGTATCC 60.221 44.000 0.00 0.00 0.00 2.59
523 524 5.874810 CCGAGTTGAGAAAAGAATGTATCCA 59.125 40.000 0.00 0.00 0.00 3.41
524 525 6.371548 CCGAGTTGAGAAAAGAATGTATCCAA 59.628 38.462 0.00 0.00 0.00 3.53
525 526 7.066284 CCGAGTTGAGAAAAGAATGTATCCAAT 59.934 37.037 0.00 0.00 0.00 3.16
526 527 9.098355 CGAGTTGAGAAAAGAATGTATCCAATA 57.902 33.333 0.00 0.00 0.00 1.90
542 543 9.323985 TGTATCCAATAAATGCTTATTTTTGGC 57.676 29.630 14.69 0.00 35.88 4.52
543 544 9.323985 GTATCCAATAAATGCTTATTTTTGGCA 57.676 29.630 14.69 0.00 35.88 4.92
544 545 7.846644 TCCAATAAATGCTTATTTTTGGCAG 57.153 32.000 14.69 0.00 35.88 4.85
545 546 6.822676 TCCAATAAATGCTTATTTTTGGCAGG 59.177 34.615 14.69 0.00 35.88 4.85
546 547 6.822676 CCAATAAATGCTTATTTTTGGCAGGA 59.177 34.615 0.00 0.00 35.88 3.86
547 548 7.336427 CCAATAAATGCTTATTTTTGGCAGGAA 59.664 33.333 0.00 0.00 35.88 3.36
548 549 8.895737 CAATAAATGCTTATTTTTGGCAGGAAT 58.104 29.630 0.00 0.00 35.88 3.01
550 551 9.768662 ATAAATGCTTATTTTTGGCAGGAATAG 57.231 29.630 0.00 0.00 39.38 1.73
551 552 5.009854 TGCTTATTTTTGGCAGGAATAGC 57.990 39.130 13.17 13.17 0.00 2.97
552 553 4.465660 TGCTTATTTTTGGCAGGAATAGCA 59.534 37.500 15.90 15.90 0.00 3.49
553 554 5.045872 GCTTATTTTTGGCAGGAATAGCAG 58.954 41.667 14.14 8.72 0.00 4.24
554 555 5.163519 GCTTATTTTTGGCAGGAATAGCAGA 60.164 40.000 14.14 0.00 0.00 4.26
555 556 4.996788 ATTTTTGGCAGGAATAGCAGAG 57.003 40.909 0.00 0.00 0.00 3.35
556 557 3.719268 TTTTGGCAGGAATAGCAGAGA 57.281 42.857 0.00 0.00 0.00 3.10
557 558 3.719268 TTTGGCAGGAATAGCAGAGAA 57.281 42.857 0.00 0.00 0.00 2.87
558 559 3.719268 TTGGCAGGAATAGCAGAGAAA 57.281 42.857 0.00 0.00 0.00 2.52
559 560 2.991250 TGGCAGGAATAGCAGAGAAAC 58.009 47.619 0.00 0.00 0.00 2.78
560 561 2.573462 TGGCAGGAATAGCAGAGAAACT 59.427 45.455 0.00 0.00 0.00 2.66
561 562 3.774766 TGGCAGGAATAGCAGAGAAACTA 59.225 43.478 0.00 0.00 0.00 2.24
562 563 4.141846 TGGCAGGAATAGCAGAGAAACTAG 60.142 45.833 0.00 0.00 0.00 2.57
563 564 4.141824 GGCAGGAATAGCAGAGAAACTAGT 60.142 45.833 0.00 0.00 0.00 2.57
564 565 5.423886 GCAGGAATAGCAGAGAAACTAGTT 58.576 41.667 1.12 1.12 0.00 2.24
565 566 5.522097 GCAGGAATAGCAGAGAAACTAGTTC 59.478 44.000 8.95 2.91 36.38 3.01
578 579 7.252965 AGAAACTAGTTCTTCTTTTCAGTGC 57.747 36.000 8.95 0.00 44.64 4.40
579 580 7.051000 AGAAACTAGTTCTTCTTTTCAGTGCT 58.949 34.615 8.95 0.00 44.64 4.40
580 581 6.852858 AACTAGTTCTTCTTTTCAGTGCTC 57.147 37.500 1.12 0.00 0.00 4.26
581 582 4.985409 ACTAGTTCTTCTTTTCAGTGCTCG 59.015 41.667 0.00 0.00 0.00 5.03
582 583 3.798202 AGTTCTTCTTTTCAGTGCTCGT 58.202 40.909 0.00 0.00 0.00 4.18
583 584 4.945246 AGTTCTTCTTTTCAGTGCTCGTA 58.055 39.130 0.00 0.00 0.00 3.43
584 585 5.542779 AGTTCTTCTTTTCAGTGCTCGTAT 58.457 37.500 0.00 0.00 0.00 3.06
585 586 5.992217 AGTTCTTCTTTTCAGTGCTCGTATT 59.008 36.000 0.00 0.00 0.00 1.89
586 587 7.152645 AGTTCTTCTTTTCAGTGCTCGTATTA 58.847 34.615 0.00 0.00 0.00 0.98
587 588 7.819900 AGTTCTTCTTTTCAGTGCTCGTATTAT 59.180 33.333 0.00 0.00 0.00 1.28
588 589 8.443937 GTTCTTCTTTTCAGTGCTCGTATTATT 58.556 33.333 0.00 0.00 0.00 1.40
589 590 8.547967 TCTTCTTTTCAGTGCTCGTATTATTT 57.452 30.769 0.00 0.00 0.00 1.40
590 591 8.999431 TCTTCTTTTCAGTGCTCGTATTATTTT 58.001 29.630 0.00 0.00 0.00 1.82
591 592 9.267096 CTTCTTTTCAGTGCTCGTATTATTTTC 57.733 33.333 0.00 0.00 0.00 2.29
592 593 8.547967 TCTTTTCAGTGCTCGTATTATTTTCT 57.452 30.769 0.00 0.00 0.00 2.52
593 594 8.999431 TCTTTTCAGTGCTCGTATTATTTTCTT 58.001 29.630 0.00 0.00 0.00 2.52
596 597 8.997621 TTCAGTGCTCGTATTATTTTCTTAGT 57.002 30.769 0.00 0.00 0.00 2.24
597 598 8.997621 TCAGTGCTCGTATTATTTTCTTAGTT 57.002 30.769 0.00 0.00 0.00 2.24
598 599 9.084164 TCAGTGCTCGTATTATTTTCTTAGTTC 57.916 33.333 0.00 0.00 0.00 3.01
599 600 8.050750 CAGTGCTCGTATTATTTTCTTAGTTCG 58.949 37.037 0.00 0.00 0.00 3.95
600 601 7.758528 AGTGCTCGTATTATTTTCTTAGTTCGT 59.241 33.333 0.00 0.00 0.00 3.85
601 602 9.013490 GTGCTCGTATTATTTTCTTAGTTCGTA 57.987 33.333 0.00 0.00 0.00 3.43
602 603 9.013490 TGCTCGTATTATTTTCTTAGTTCGTAC 57.987 33.333 0.00 0.00 0.00 3.67
603 604 9.230932 GCTCGTATTATTTTCTTAGTTCGTACT 57.769 33.333 0.00 0.00 38.44 2.73
612 613 9.939802 ATTTTCTTAGTTCGTACTACCATCTTT 57.060 29.630 0.87 0.00 36.61 2.52
613 614 8.976986 TTTCTTAGTTCGTACTACCATCTTTC 57.023 34.615 0.87 0.00 36.61 2.62
614 615 7.934855 TCTTAGTTCGTACTACCATCTTTCT 57.065 36.000 0.87 0.00 36.61 2.52
615 616 8.345724 TCTTAGTTCGTACTACCATCTTTCTT 57.654 34.615 0.87 0.00 36.61 2.52
616 617 8.800332 TCTTAGTTCGTACTACCATCTTTCTTT 58.200 33.333 0.87 0.00 36.61 2.52
618 619 9.846248 TTAGTTCGTACTACCATCTTTCTTTAC 57.154 33.333 0.87 0.00 36.61 2.01
619 620 8.120140 AGTTCGTACTACCATCTTTCTTTACT 57.880 34.615 0.00 0.00 31.21 2.24
620 621 8.583296 AGTTCGTACTACCATCTTTCTTTACTT 58.417 33.333 0.00 0.00 31.21 2.24
621 622 8.645487 GTTCGTACTACCATCTTTCTTTACTTG 58.355 37.037 0.00 0.00 0.00 3.16
622 623 8.114331 TCGTACTACCATCTTTCTTTACTTGA 57.886 34.615 0.00 0.00 0.00 3.02
623 624 8.242053 TCGTACTACCATCTTTCTTTACTTGAG 58.758 37.037 0.00 0.00 0.00 3.02
624 625 8.242053 CGTACTACCATCTTTCTTTACTTGAGA 58.758 37.037 0.00 0.00 0.00 3.27
625 626 9.924650 GTACTACCATCTTTCTTTACTTGAGAA 57.075 33.333 0.00 0.00 0.00 2.87
627 628 8.871125 ACTACCATCTTTCTTTACTTGAGAAGA 58.129 33.333 0.00 0.00 34.84 2.87
628 629 9.712305 CTACCATCTTTCTTTACTTGAGAAGAA 57.288 33.333 0.00 0.00 39.42 2.52
629 630 8.980481 ACCATCTTTCTTTACTTGAGAAGAAA 57.020 30.769 9.93 9.93 44.91 2.52
630 631 9.408648 ACCATCTTTCTTTACTTGAGAAGAAAA 57.591 29.630 11.11 5.06 45.77 2.29
634 635 9.408648 TCTTTCTTTACTTGAGAAGAAAATGGT 57.591 29.630 11.11 0.00 45.77 3.55
643 644 9.793259 ACTTGAGAAGAAAATGGTAGATAACAA 57.207 29.630 0.00 0.00 0.00 2.83
645 646 9.567776 TTGAGAAGAAAATGGTAGATAACAACA 57.432 29.630 0.00 0.00 0.00 3.33
646 647 8.999431 TGAGAAGAAAATGGTAGATAACAACAC 58.001 33.333 0.00 0.00 0.00 3.32
647 648 8.336801 AGAAGAAAATGGTAGATAACAACACC 57.663 34.615 0.00 0.00 0.00 4.16
648 649 7.393515 AGAAGAAAATGGTAGATAACAACACCC 59.606 37.037 0.00 0.00 0.00 4.61
649 650 6.548321 AGAAAATGGTAGATAACAACACCCA 58.452 36.000 0.00 0.00 0.00 4.51
650 651 6.659242 AGAAAATGGTAGATAACAACACCCAG 59.341 38.462 0.00 0.00 0.00 4.45
651 652 3.343941 TGGTAGATAACAACACCCAGC 57.656 47.619 0.00 0.00 0.00 4.85
652 653 2.026636 TGGTAGATAACAACACCCAGCC 60.027 50.000 0.00 0.00 0.00 4.85
653 654 2.026636 GGTAGATAACAACACCCAGCCA 60.027 50.000 0.00 0.00 0.00 4.75
654 655 3.371595 GGTAGATAACAACACCCAGCCAT 60.372 47.826 0.00 0.00 0.00 4.40
655 656 3.456380 AGATAACAACACCCAGCCATT 57.544 42.857 0.00 0.00 0.00 3.16
656 657 4.584638 AGATAACAACACCCAGCCATTA 57.415 40.909 0.00 0.00 0.00 1.90
657 658 4.270008 AGATAACAACACCCAGCCATTAC 58.730 43.478 0.00 0.00 0.00 1.89
658 659 2.675658 AACAACACCCAGCCATTACT 57.324 45.000 0.00 0.00 0.00 2.24
659 660 2.675658 ACAACACCCAGCCATTACTT 57.324 45.000 0.00 0.00 0.00 2.24
660 661 3.799432 ACAACACCCAGCCATTACTTA 57.201 42.857 0.00 0.00 0.00 2.24
661 662 3.418047 ACAACACCCAGCCATTACTTAC 58.582 45.455 0.00 0.00 0.00 2.34
662 663 3.181438 ACAACACCCAGCCATTACTTACA 60.181 43.478 0.00 0.00 0.00 2.41
663 664 3.799432 ACACCCAGCCATTACTTACAA 57.201 42.857 0.00 0.00 0.00 2.41
664 665 4.107127 ACACCCAGCCATTACTTACAAA 57.893 40.909 0.00 0.00 0.00 2.83
665 666 3.824443 ACACCCAGCCATTACTTACAAAC 59.176 43.478 0.00 0.00 0.00 2.93
666 667 3.078837 ACCCAGCCATTACTTACAAACG 58.921 45.455 0.00 0.00 0.00 3.60
667 668 3.078837 CCCAGCCATTACTTACAAACGT 58.921 45.455 0.00 0.00 0.00 3.99
668 669 4.255301 CCCAGCCATTACTTACAAACGTA 58.745 43.478 0.00 0.00 0.00 3.57
669 670 4.093850 CCCAGCCATTACTTACAAACGTAC 59.906 45.833 0.00 0.00 0.00 3.67
670 671 4.933400 CCAGCCATTACTTACAAACGTACT 59.067 41.667 0.00 0.00 0.00 2.73
671 672 5.163893 CCAGCCATTACTTACAAACGTACTG 60.164 44.000 0.00 0.00 0.00 2.74
672 673 4.390909 AGCCATTACTTACAAACGTACTGC 59.609 41.667 0.00 0.00 0.00 4.40
673 674 4.436451 GCCATTACTTACAAACGTACTGCC 60.436 45.833 0.00 0.00 0.00 4.85
674 675 4.093850 CCATTACTTACAAACGTACTGCCC 59.906 45.833 0.00 0.00 0.00 5.36
675 676 2.914695 ACTTACAAACGTACTGCCCA 57.085 45.000 0.00 0.00 0.00 5.36
676 677 3.412237 ACTTACAAACGTACTGCCCAT 57.588 42.857 0.00 0.00 0.00 4.00
677 678 3.071479 ACTTACAAACGTACTGCCCATG 58.929 45.455 0.00 0.00 0.00 3.66
678 679 1.444836 TACAAACGTACTGCCCATGC 58.555 50.000 0.00 0.00 38.26 4.06
687 688 3.290567 TGCCCATGCAGCATTGTC 58.709 55.556 4.69 0.00 44.23 3.18
688 689 1.606889 TGCCCATGCAGCATTGTCA 60.607 52.632 4.69 0.00 44.23 3.58
689 690 1.141019 GCCCATGCAGCATTGTCAG 59.859 57.895 4.69 0.00 37.47 3.51
690 691 1.141019 CCCATGCAGCATTGTCAGC 59.859 57.895 4.69 0.00 0.00 4.26
691 692 1.600511 CCCATGCAGCATTGTCAGCA 61.601 55.000 4.69 0.00 41.73 4.41
692 693 0.245266 CCATGCAGCATTGTCAGCAA 59.755 50.000 4.69 0.00 40.76 3.91
693 694 1.134818 CCATGCAGCATTGTCAGCAAT 60.135 47.619 4.69 0.00 45.42 3.56
706 707 7.733402 ATTGTCAGCAATGCAAACTAAATTT 57.267 28.000 8.35 0.00 43.12 1.82
707 708 7.577979 ATTGTCAGCAATGCAAACTAAATTTG 58.422 30.769 8.35 0.00 43.12 2.32
708 709 7.227116 ATTGTCAGCAATGCAAACTAAATTTGT 59.773 29.630 8.35 0.00 43.12 2.83
727 728 9.987272 AAATTTGTCCAAGGAAAAATCTTAGAG 57.013 29.630 15.73 0.00 40.15 2.43
728 729 8.712228 ATTTGTCCAAGGAAAAATCTTAGAGT 57.288 30.769 10.77 0.00 37.46 3.24
729 730 8.533569 TTTGTCCAAGGAAAAATCTTAGAGTT 57.466 30.769 0.22 0.00 0.00 3.01
730 731 9.635404 TTTGTCCAAGGAAAAATCTTAGAGTTA 57.365 29.630 0.22 0.00 0.00 2.24
731 732 9.807921 TTGTCCAAGGAAAAATCTTAGAGTTAT 57.192 29.630 0.00 0.00 0.00 1.89
732 733 9.807921 TGTCCAAGGAAAAATCTTAGAGTTATT 57.192 29.630 0.00 0.00 0.00 1.40
774 775 1.935873 CATACGGTGCACAGATTCAGG 59.064 52.381 24.13 3.78 0.00 3.86
775 776 0.249120 TACGGTGCACAGATTCAGGG 59.751 55.000 24.13 0.80 0.00 4.45
776 777 1.746615 CGGTGCACAGATTCAGGGG 60.747 63.158 20.43 0.00 0.00 4.79
777 778 2.048603 GGTGCACAGATTCAGGGGC 61.049 63.158 20.43 0.00 0.00 5.80
778 779 1.001641 GTGCACAGATTCAGGGGCT 60.002 57.895 13.17 0.00 0.00 5.19
779 780 0.253044 GTGCACAGATTCAGGGGCTA 59.747 55.000 13.17 0.00 0.00 3.93
780 781 1.133976 GTGCACAGATTCAGGGGCTAT 60.134 52.381 13.17 0.00 0.00 2.97
781 782 1.565759 TGCACAGATTCAGGGGCTATT 59.434 47.619 4.54 0.00 0.00 1.73
782 783 2.225467 GCACAGATTCAGGGGCTATTC 58.775 52.381 0.00 0.00 0.00 1.75
783 784 2.487934 CACAGATTCAGGGGCTATTCG 58.512 52.381 0.00 0.00 0.00 3.34
784 785 1.417890 ACAGATTCAGGGGCTATTCGG 59.582 52.381 0.00 0.00 0.00 4.30
785 786 0.398318 AGATTCAGGGGCTATTCGGC 59.602 55.000 0.00 0.00 37.49 5.54
786 787 0.398318 GATTCAGGGGCTATTCGGCT 59.602 55.000 0.00 0.00 38.46 5.52
787 788 0.398318 ATTCAGGGGCTATTCGGCTC 59.602 55.000 0.00 0.00 39.42 4.70
788 789 2.028125 TTCAGGGGCTATTCGGCTCG 62.028 60.000 0.00 0.00 44.96 5.03
789 790 2.123425 AGGGGCTATTCGGCTCGA 60.123 61.111 0.00 0.00 44.96 4.04
790 791 1.534235 AGGGGCTATTCGGCTCGAT 60.534 57.895 0.00 0.00 44.96 3.59
791 792 1.122019 AGGGGCTATTCGGCTCGATT 61.122 55.000 0.00 0.00 44.96 3.34
792 793 0.951040 GGGGCTATTCGGCTCGATTG 60.951 60.000 0.00 0.00 35.23 2.67
793 794 0.249911 GGGCTATTCGGCTCGATTGT 60.250 55.000 0.00 0.00 35.23 2.71
794 795 1.140816 GGCTATTCGGCTCGATTGTC 58.859 55.000 0.00 0.00 35.23 3.18
795 796 1.269831 GGCTATTCGGCTCGATTGTCT 60.270 52.381 0.00 0.00 35.23 3.41
796 797 2.055100 GCTATTCGGCTCGATTGTCTC 58.945 52.381 0.00 0.00 35.23 3.36
821 822 1.542472 CTGCTGTCAATTCACATGCCA 59.458 47.619 0.00 0.00 0.00 4.92
859 863 7.114754 AGTATTCGATATATTCACCTACCGGA 58.885 38.462 9.46 0.00 0.00 5.14
872 876 3.959293 CCTACCGGATTAGGTTTGGTTT 58.041 45.455 9.46 0.00 43.00 3.27
881 885 5.475564 GGATTAGGTTTGGTTTCTGTAAGCA 59.524 40.000 0.00 0.00 42.19 3.91
886 890 4.359706 GTTTGGTTTCTGTAAGCACTTGG 58.640 43.478 0.00 0.00 43.48 3.61
893 897 5.437289 TTCTGTAAGCACTTGGTTGAATG 57.563 39.130 3.92 0.00 37.00 2.67
923 934 4.067896 CACTCCTTGTAGCTTCACAACAT 58.932 43.478 0.00 0.00 34.75 2.71
998 1011 5.530519 TTGATATTTTCGTCAGTCACTGC 57.469 39.130 0.00 0.00 0.00 4.40
1010 1025 0.181114 GTCACTGCCATGCCATAGGA 59.819 55.000 0.00 0.00 0.00 2.94
1023 1038 4.476297 TGCCATAGGATTGCTCAATCAAT 58.524 39.130 20.29 12.17 46.77 2.57
1031 1046 3.454719 TTGCTCAATCAATGGGGAAGA 57.545 42.857 0.00 0.00 34.53 2.87
1035 1050 5.135383 TGCTCAATCAATGGGGAAGATAAG 58.865 41.667 0.00 0.00 0.00 1.73
1059 1074 2.030274 GCAATACCTTTTTCACACGGCT 60.030 45.455 0.00 0.00 0.00 5.52
1064 1084 1.596954 CCTTTTTCACACGGCTTGTCG 60.597 52.381 0.00 0.00 35.67 4.35
1067 1087 3.776659 TTCACACGGCTTGTCGCGA 62.777 57.895 3.71 3.71 35.67 5.87
1072 1092 2.813474 CGGCTTGTCGCGATCCAA 60.813 61.111 14.06 12.26 40.44 3.53
1095 1119 7.767659 CCAATCATAGTGATTATCCGATCATGT 59.232 37.037 4.99 0.00 44.60 3.21
1135 1163 5.371176 TCCTAGATAGTGATCTGTCTGGACT 59.629 44.000 6.85 0.00 42.66 3.85
1136 1164 6.559157 TCCTAGATAGTGATCTGTCTGGACTA 59.441 42.308 6.85 0.00 42.66 2.59
1158 1186 1.893801 CTGGTGGTCCGTTACTCTTCT 59.106 52.381 0.00 0.00 36.30 2.85
1182 1213 7.776030 TCTGTAGATTAGCTCTTAGCACTAACT 59.224 37.037 0.00 0.00 45.56 2.24
1183 1214 7.708051 TGTAGATTAGCTCTTAGCACTAACTG 58.292 38.462 0.00 0.00 45.56 3.16
1191 1222 5.067936 GCTCTTAGCACTAACTGGATGTAGA 59.932 44.000 0.00 0.00 41.89 2.59
1363 2672 1.210204 TCAGCAGGGATGGAAAGGCT 61.210 55.000 0.00 0.00 0.00 4.58
1402 2711 1.003118 TGGAAGCCTACATGTGGTGTC 59.997 52.381 9.11 9.09 42.29 3.67
1548 2857 5.586643 CCATTGATGCTGATCATGAGGATAG 59.413 44.000 0.09 0.00 38.43 2.08
1642 2951 4.954092 GATGGTCCTGAACAAGAACATC 57.046 45.455 13.33 13.33 46.67 3.06
1838 3148 2.229543 CTCACCACAACAACCATCATGG 59.770 50.000 0.54 0.54 45.02 3.66
1951 3261 7.119709 TCCTCCGATTGACAGAAATAATGTA 57.880 36.000 0.00 0.00 0.00 2.29
1954 3264 9.144747 CCTCCGATTGACAGAAATAATGTATAG 57.855 37.037 0.00 0.00 0.00 1.31
1955 3265 9.698309 CTCCGATTGACAGAAATAATGTATAGT 57.302 33.333 0.00 0.00 0.00 2.12
2035 3346 5.953571 ACTACTTCCCTTCAAGGTTTGATT 58.046 37.500 1.78 0.00 39.84 2.57
2064 3375 4.680708 CGTCATGCTGAACAGTACCCTATT 60.681 45.833 3.77 0.00 0.00 1.73
2079 3390 2.101582 CCCTATTCCTCCTCGTGTTCTG 59.898 54.545 0.00 0.00 0.00 3.02
2094 3405 4.020617 CTGTCTGGCTGCCGGGAA 62.021 66.667 26.46 14.23 0.00 3.97
2106 3417 0.892063 GCCGGGAAAAGGTATGCAAA 59.108 50.000 2.18 0.00 0.00 3.68
2115 3426 6.172630 GGAAAAGGTATGCAAATTGGAATGT 58.827 36.000 0.00 0.00 0.00 2.71
2119 3430 7.716799 AAGGTATGCAAATTGGAATGTTAGA 57.283 32.000 0.00 0.00 0.00 2.10
2121 3432 8.310122 AGGTATGCAAATTGGAATGTTAGAAT 57.690 30.769 0.00 0.00 0.00 2.40
2122 3433 8.761689 AGGTATGCAAATTGGAATGTTAGAATT 58.238 29.630 0.00 0.00 0.00 2.17
2123 3434 9.034544 GGTATGCAAATTGGAATGTTAGAATTC 57.965 33.333 0.00 0.00 36.08 2.17
2124 3435 9.807649 GTATGCAAATTGGAATGTTAGAATTCT 57.192 29.630 13.56 13.56 36.87 2.40
2147 3458 7.872881 TCTAATTCTATTCGTACTACTGCCAG 58.127 38.462 0.00 0.00 0.00 4.85
2150 3461 3.881688 TCTATTCGTACTACTGCCAGTCC 59.118 47.826 0.00 0.00 0.00 3.85
2151 3462 1.180029 TTCGTACTACTGCCAGTCCC 58.820 55.000 0.00 0.00 0.00 4.46
2152 3463 0.330604 TCGTACTACTGCCAGTCCCT 59.669 55.000 0.00 0.00 0.00 4.20
2153 3464 1.183549 CGTACTACTGCCAGTCCCTT 58.816 55.000 0.00 0.00 0.00 3.95
2154 3465 1.549170 CGTACTACTGCCAGTCCCTTT 59.451 52.381 0.00 0.00 0.00 3.11
2155 3466 2.674177 CGTACTACTGCCAGTCCCTTTG 60.674 54.545 0.00 0.00 0.00 2.77
2159 3470 0.896940 ACTGCCAGTCCCTTTGCATG 60.897 55.000 0.00 0.00 32.53 4.06
2160 3471 0.896940 CTGCCAGTCCCTTTGCATGT 60.897 55.000 0.00 0.00 32.53 3.21
2238 3553 6.681729 ACTCTGTGAATTAAACTCCTACCA 57.318 37.500 0.00 0.00 0.00 3.25
2239 3554 7.259088 ACTCTGTGAATTAAACTCCTACCAT 57.741 36.000 0.00 0.00 0.00 3.55
2240 3555 7.106239 ACTCTGTGAATTAAACTCCTACCATG 58.894 38.462 0.00 0.00 0.00 3.66
2241 3556 7.016153 TCTGTGAATTAAACTCCTACCATGT 57.984 36.000 0.00 0.00 0.00 3.21
2242 3557 6.878923 TCTGTGAATTAAACTCCTACCATGTG 59.121 38.462 0.00 0.00 0.00 3.21
2254 3572 6.323739 ACTCCTACCATGTGTTTTGACAAATT 59.676 34.615 0.50 0.00 0.00 1.82
2271 3589 8.932945 TGACAAATTGTTTGCTACATTTGTAA 57.067 26.923 19.54 14.97 42.18 2.41
2284 3602 6.183359 GCTACATTTGTAATTTTGGAACTGCG 60.183 38.462 0.00 0.00 0.00 5.18
2288 3606 2.952978 TGTAATTTTGGAACTGCGGTGT 59.047 40.909 0.00 0.00 0.00 4.16
2300 3618 4.380841 ACTGCGGTGTATTATCGAGAAA 57.619 40.909 0.00 0.00 33.82 2.52
2447 3766 8.114905 GCTAACCGAACTGTTTCTTATATGAAC 58.885 37.037 0.72 0.00 0.00 3.18
2450 3769 6.090358 ACCGAACTGTTTCTTATATGAACACG 59.910 38.462 0.72 0.00 0.00 4.49
2601 3946 2.364002 TGCACACTGCTCTACTGTTACA 59.636 45.455 0.00 0.00 45.31 2.41
2618 3963 8.908786 ACTGTTACATGTATCTGGGATTATTG 57.091 34.615 19.15 0.15 0.00 1.90
2731 4077 2.575532 CCGAACATGTAGATGGGCAAT 58.424 47.619 0.00 0.00 33.39 3.56
2732 4078 3.738982 CCGAACATGTAGATGGGCAATA 58.261 45.455 0.00 0.00 33.39 1.90
2747 4093 3.274288 GGCAATAAGGAGAGAACCAGTG 58.726 50.000 0.00 0.00 0.00 3.66
2771 4117 4.308458 CCGCCTCGGTTGGTGTCA 62.308 66.667 0.00 0.00 42.73 3.58
2806 4153 2.025981 AGGGTGCAGCATGAACTGAATA 60.026 45.455 19.06 0.00 46.71 1.75
2810 4158 4.348656 GTGCAGCATGAACTGAATATGTG 58.651 43.478 0.00 0.00 43.11 3.21
2813 4161 4.788840 GCAGCATGAACTGAATATGTGCTC 60.789 45.833 0.00 0.00 39.22 4.26
2889 4237 9.778741 ATGTAATACCGATGAACAATGATAGTT 57.221 29.630 0.00 0.00 0.00 2.24
2900 4248 6.319911 TGAACAATGATAGTTGGTGTTGTGAA 59.680 34.615 0.00 0.00 32.75 3.18
2979 4336 7.581213 AGACAATGTGTTGGTTAATCTTTGA 57.419 32.000 0.00 0.00 39.70 2.69
3032 4396 5.075858 TGATGATCCATTTTGTTTGGCTC 57.924 39.130 0.00 0.00 34.06 4.70
3048 4418 1.374190 CTCTCCTGCCACTGCTGTT 59.626 57.895 0.00 0.00 38.71 3.16
3058 4428 4.558178 TGCCACTGCTGTTTCATAATTTG 58.442 39.130 0.00 0.00 38.71 2.32
3060 4430 5.221402 TGCCACTGCTGTTTCATAATTTGAA 60.221 36.000 0.00 0.00 39.43 2.69
3119 4491 6.506500 TTCAGATGAAGAGATTTTTCTGCC 57.493 37.500 0.00 0.00 32.57 4.85
3121 4493 3.944015 AGATGAAGAGATTTTTCTGCCGG 59.056 43.478 0.00 0.00 0.00 6.13
3122 4494 3.417069 TGAAGAGATTTTTCTGCCGGA 57.583 42.857 5.05 0.00 0.00 5.14
3324 4791 2.810650 CAGCGCCTCGTCTTATAAACT 58.189 47.619 2.29 0.00 0.00 2.66
3348 4815 4.143333 GCTCCCCGCGAACTAGCA 62.143 66.667 8.23 0.00 36.85 3.49
3365 4832 3.914426 AGCAAGGTGGGACTAATGTAG 57.086 47.619 0.00 0.00 0.00 2.74
3369 4836 1.137697 GGTGGGACTAATGTAGGGGG 58.862 60.000 0.00 0.00 0.00 5.40
3477 4990 8.430573 ACCCTGTGCATATATATACTACACAA 57.569 34.615 17.98 8.38 36.25 3.33
3499 5012 1.463444 CGAACAAGACGGGCCTTAAAG 59.537 52.381 0.84 0.00 0.00 1.85
3519 5395 1.346365 CATGTAGCGCACGTACTGTT 58.654 50.000 11.47 0.00 0.00 3.16
3522 5398 3.010624 TGTAGCGCACGTACTGTTAAA 57.989 42.857 11.47 0.00 0.00 1.52
3566 5503 1.541588 GTGAAAGGCACAATCCCAGTC 59.458 52.381 0.00 0.00 46.91 3.51
3568 5505 2.087646 GAAAGGCACAATCCCAGTCTC 58.912 52.381 0.00 0.00 0.00 3.36
3569 5506 0.036010 AAGGCACAATCCCAGTCTCG 60.036 55.000 0.00 0.00 0.00 4.04
3573 5510 1.464997 GCACAATCCCAGTCTCGTTTC 59.535 52.381 0.00 0.00 0.00 2.78
3576 5513 3.753272 CACAATCCCAGTCTCGTTTCAAT 59.247 43.478 0.00 0.00 0.00 2.57
3577 5514 4.003648 ACAATCCCAGTCTCGTTTCAATC 58.996 43.478 0.00 0.00 0.00 2.67
3578 5515 2.363788 TCCCAGTCTCGTTTCAATCG 57.636 50.000 0.00 0.00 0.00 3.34
3588 5840 4.097892 TCTCGTTTCAATCGATCCATCTCA 59.902 41.667 0.00 0.00 36.73 3.27
3613 5865 1.735198 CAGCCGCCGTCGTTTCTTA 60.735 57.895 0.00 0.00 0.00 2.10
3621 5873 3.514645 GCCGTCGTTTCTTATTCCTGTA 58.485 45.455 0.00 0.00 0.00 2.74
3636 5888 0.822164 CTGTATCCTCGTTCCCCGTT 59.178 55.000 0.00 0.00 37.94 4.44
3638 5890 1.109609 GTATCCTCGTTCCCCGTTCT 58.890 55.000 0.00 0.00 37.94 3.01
3649 5901 1.677637 CCCCGTTCTGCTCCTACTCC 61.678 65.000 0.00 0.00 0.00 3.85
3661 5913 0.531532 CCTACTCCCGAAGCATGCAG 60.532 60.000 21.98 9.77 0.00 4.41
3696 7183 9.294030 GCAAATTAATGGATATTGCTGCTATAC 57.706 33.333 12.48 0.00 42.24 1.47
3713 7200 7.095017 GCTGCTATACTTGATTCCTTTGATACC 60.095 40.741 0.00 0.00 0.00 2.73
3757 7342 8.150945 TCACTCCTCTATGAATTTGCCTATAAC 58.849 37.037 0.00 0.00 0.00 1.89
3771 7356 9.883142 ATTTGCCTATAACTATTCTCATCTAGC 57.117 33.333 0.00 0.00 0.00 3.42
3777 7362 2.814919 ACTATTCTCATCTAGCGGACGG 59.185 50.000 0.00 0.00 0.00 4.79
3778 7363 0.315568 ATTCTCATCTAGCGGACGGC 59.684 55.000 0.00 0.00 44.05 5.68
3779 7364 1.735376 TTCTCATCTAGCGGACGGCC 61.735 60.000 0.00 0.00 45.17 6.13
3780 7365 2.441348 TCATCTAGCGGACGGCCA 60.441 61.111 8.76 0.00 45.17 5.36
3783 7368 2.786495 ATCTAGCGGACGGCCACAG 61.786 63.158 8.76 0.00 45.17 3.66
3796 7381 2.621763 CCACAGGCAGAGACAACAC 58.378 57.895 0.00 0.00 0.00 3.32
3798 7383 1.475751 CCACAGGCAGAGACAACACTT 60.476 52.381 0.00 0.00 0.00 3.16
3799 7384 1.869767 CACAGGCAGAGACAACACTTC 59.130 52.381 0.00 0.00 0.00 3.01
3801 7386 2.105477 ACAGGCAGAGACAACACTTCAT 59.895 45.455 0.00 0.00 0.00 2.57
3802 7387 3.324846 ACAGGCAGAGACAACACTTCATA 59.675 43.478 0.00 0.00 0.00 2.15
3803 7388 4.202357 ACAGGCAGAGACAACACTTCATAA 60.202 41.667 0.00 0.00 0.00 1.90
3804 7389 4.391216 CAGGCAGAGACAACACTTCATAAG 59.609 45.833 0.00 0.00 0.00 1.73
3805 7390 3.126000 GGCAGAGACAACACTTCATAAGC 59.874 47.826 0.00 0.00 0.00 3.09
3809 7394 5.348179 CAGAGACAACACTTCATAAGCTCAG 59.652 44.000 0.00 0.00 0.00 3.35
3811 7396 5.615289 AGACAACACTTCATAAGCTCAGTT 58.385 37.500 0.00 0.00 0.00 3.16
3812 7397 6.759272 AGACAACACTTCATAAGCTCAGTTA 58.241 36.000 0.00 0.00 0.00 2.24
3813 7398 6.647067 AGACAACACTTCATAAGCTCAGTTAC 59.353 38.462 0.00 0.00 0.00 2.50
3814 7399 6.525629 ACAACACTTCATAAGCTCAGTTACT 58.474 36.000 0.00 0.00 0.00 2.24
3815 7400 6.992715 ACAACACTTCATAAGCTCAGTTACTT 59.007 34.615 0.00 0.00 0.00 2.24
3816 7401 7.499232 ACAACACTTCATAAGCTCAGTTACTTT 59.501 33.333 0.00 0.00 0.00 2.66
3817 7402 7.426929 ACACTTCATAAGCTCAGTTACTTTG 57.573 36.000 0.00 0.00 0.00 2.77
3819 7404 5.997746 ACTTCATAAGCTCAGTTACTTTGCA 59.002 36.000 8.59 0.00 0.00 4.08
3821 7406 6.486253 TCATAAGCTCAGTTACTTTGCAAG 57.514 37.500 0.00 0.00 0.00 4.01
3822 7407 5.997746 TCATAAGCTCAGTTACTTTGCAAGT 59.002 36.000 0.00 3.02 45.40 3.16
3834 7419 3.435590 GCAAGTTGCAGCAGGACA 58.564 55.556 22.90 0.00 44.26 4.02
3835 7420 1.962144 GCAAGTTGCAGCAGGACAT 59.038 52.632 22.90 0.00 44.26 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 2.736889 TCGGAGCGAAAAAGGCAACTG 61.737 52.381 0.00 0.00 38.73 3.16
5 6 0.534203 TCGGAGCGAAAAAGGCAACT 60.534 50.000 0.00 0.00 41.00 3.16
6 7 0.385598 GTCGGAGCGAAAAAGGCAAC 60.386 55.000 0.00 0.00 37.72 4.17
7 8 1.837538 CGTCGGAGCGAAAAAGGCAA 61.838 55.000 0.00 0.00 37.72 4.52
8 9 2.314647 CGTCGGAGCGAAAAAGGCA 61.315 57.895 0.00 0.00 37.72 4.75
9 10 2.474712 CGTCGGAGCGAAAAAGGC 59.525 61.111 0.00 0.00 37.72 4.35
10 11 2.388232 CCCGTCGGAGCGAAAAAGG 61.388 63.158 14.39 0.00 37.72 3.11
11 12 3.023591 GCCCGTCGGAGCGAAAAAG 62.024 63.158 14.39 0.00 37.72 2.27
12 13 3.045492 GCCCGTCGGAGCGAAAAA 61.045 61.111 14.39 0.00 37.72 1.94
30 31 3.647771 GTGGTCCACCTGGTCCCC 61.648 72.222 11.30 0.00 41.82 4.81
31 32 4.016706 CGTGGTCCACCTGGTCCC 62.017 72.222 16.60 0.00 41.82 4.46
32 33 3.239253 ACGTGGTCCACCTGGTCC 61.239 66.667 16.60 0.00 42.66 4.46
33 34 2.030562 CACGTGGTCCACCTGGTC 59.969 66.667 16.60 0.00 36.82 4.02
34 35 3.556306 CCACGTGGTCCACCTGGT 61.556 66.667 26.95 12.26 36.36 4.00
35 36 4.329545 CCCACGTGGTCCACCTGG 62.330 72.222 31.80 25.48 39.22 4.45
52 53 4.699522 AAACAGTCCCCCGCTCGC 62.700 66.667 0.00 0.00 0.00 5.03
53 54 2.434359 GAAACAGTCCCCCGCTCG 60.434 66.667 0.00 0.00 0.00 5.03
54 55 2.046217 GGAAACAGTCCCCCGCTC 60.046 66.667 0.00 0.00 41.10 5.03
62 63 1.721926 CGAGCGAAAGAGGAAACAGTC 59.278 52.381 0.00 0.00 0.00 3.51
63 64 1.340248 TCGAGCGAAAGAGGAAACAGT 59.660 47.619 0.00 0.00 0.00 3.55
64 65 1.989165 CTCGAGCGAAAGAGGAAACAG 59.011 52.381 0.00 0.00 0.00 3.16
65 66 2.065993 CTCGAGCGAAAGAGGAAACA 57.934 50.000 0.00 0.00 0.00 2.83
71 72 2.496817 CCCCCTCGAGCGAAAGAG 59.503 66.667 6.99 0.00 0.00 2.85
91 92 1.339929 CCGAAAAAGGAAACCACCTGG 59.660 52.381 0.00 0.00 40.49 4.45
92 93 1.339929 CCCGAAAAAGGAAACCACCTG 59.660 52.381 0.00 0.00 40.49 4.00
93 94 1.063492 ACCCGAAAAAGGAAACCACCT 60.063 47.619 0.00 0.00 42.69 4.00
94 95 1.067974 CACCCGAAAAAGGAAACCACC 59.932 52.381 0.00 0.00 0.00 4.61
95 96 1.067974 CCACCCGAAAAAGGAAACCAC 59.932 52.381 0.00 0.00 0.00 4.16
96 97 1.404843 CCACCCGAAAAAGGAAACCA 58.595 50.000 0.00 0.00 0.00 3.67
97 98 0.032952 GCCACCCGAAAAAGGAAACC 59.967 55.000 0.00 0.00 0.00 3.27
98 99 0.032952 GGCCACCCGAAAAAGGAAAC 59.967 55.000 0.00 0.00 0.00 2.78
99 100 2.432119 GGCCACCCGAAAAAGGAAA 58.568 52.632 0.00 0.00 0.00 3.13
100 101 4.184439 GGCCACCCGAAAAAGGAA 57.816 55.556 0.00 0.00 0.00 3.36
118 119 2.030262 CTGGGATCGCTAGCCAGC 59.970 66.667 9.66 0.00 44.90 4.85
119 120 2.739784 CCTGGGATCGCTAGCCAG 59.260 66.667 9.66 9.91 30.46 4.85
120 121 2.844362 CCCTGGGATCGCTAGCCA 60.844 66.667 7.01 0.00 30.46 4.75
121 122 4.321966 GCCCTGGGATCGCTAGCC 62.322 72.222 19.27 0.00 0.00 3.93
122 123 4.671569 CGCCCTGGGATCGCTAGC 62.672 72.222 19.27 4.06 0.00 3.42
123 124 3.996124 CCGCCCTGGGATCGCTAG 61.996 72.222 19.27 6.76 0.00 3.42
142 143 3.310860 AAAGTCTAGTGGGCGGCCG 62.311 63.158 24.05 24.05 0.00 6.13
143 144 1.449778 GAAAGTCTAGTGGGCGGCC 60.450 63.158 23.42 23.42 0.00 6.13
144 145 0.036294 AAGAAAGTCTAGTGGGCGGC 60.036 55.000 0.00 0.00 0.00 6.53
145 146 2.474410 AAAGAAAGTCTAGTGGGCGG 57.526 50.000 0.00 0.00 0.00 6.13
146 147 6.817140 AGTAATAAAAGAAAGTCTAGTGGGCG 59.183 38.462 0.00 0.00 0.00 6.13
147 148 8.041919 AGAGTAATAAAAGAAAGTCTAGTGGGC 58.958 37.037 0.00 0.00 0.00 5.36
148 149 9.945904 AAGAGTAATAAAAGAAAGTCTAGTGGG 57.054 33.333 0.00 0.00 0.00 4.61
199 200 8.203681 AGCCTTAGAGTAGTAAGAAGGAAAAA 57.796 34.615 3.17 0.00 39.26 1.94
200 201 7.453752 TGAGCCTTAGAGTAGTAAGAAGGAAAA 59.546 37.037 3.17 0.00 39.26 2.29
201 202 6.952358 TGAGCCTTAGAGTAGTAAGAAGGAAA 59.048 38.462 3.17 0.00 39.26 3.13
202 203 6.491383 TGAGCCTTAGAGTAGTAAGAAGGAA 58.509 40.000 3.17 0.00 39.26 3.36
203 204 6.075949 TGAGCCTTAGAGTAGTAAGAAGGA 57.924 41.667 3.17 0.00 39.26 3.36
204 205 6.969993 ATGAGCCTTAGAGTAGTAAGAAGG 57.030 41.667 0.00 0.00 39.79 3.46
220 221 9.759473 ACCTGCAAAATATTAATATATGAGCCT 57.241 29.630 18.50 0.00 0.00 4.58
251 252 3.988379 ACTTTACATGTGCACCTGTTG 57.012 42.857 28.86 21.02 0.00 3.33
252 253 7.753309 TTTATACTTTACATGTGCACCTGTT 57.247 32.000 28.86 15.72 0.00 3.16
253 254 7.753309 TTTTATACTTTACATGTGCACCTGT 57.247 32.000 27.26 27.26 0.00 4.00
372 373 9.476928 TTGAGCCTTAGAGTAGTAAAATAGAGT 57.523 33.333 0.00 0.00 0.00 3.24
390 391 7.983484 CCTGCAAATTATTAGATTTTGAGCCTT 59.017 33.333 0.00 0.00 32.45 4.35
391 392 7.124750 ACCTGCAAATTATTAGATTTTGAGCCT 59.875 33.333 0.00 0.00 32.45 4.58
392 393 7.267857 ACCTGCAAATTATTAGATTTTGAGCC 58.732 34.615 0.00 0.00 32.45 4.70
393 394 8.598075 CAACCTGCAAATTATTAGATTTTGAGC 58.402 33.333 0.00 0.00 32.45 4.26
394 395 9.643693 ACAACCTGCAAATTATTAGATTTTGAG 57.356 29.630 0.00 0.00 32.45 3.02
395 396 9.421806 CACAACCTGCAAATTATTAGATTTTGA 57.578 29.630 0.00 0.00 32.45 2.69
396 397 8.170553 GCACAACCTGCAAATTATTAGATTTTG 58.829 33.333 0.00 0.00 46.29 2.44
397 398 8.255394 GCACAACCTGCAAATTATTAGATTTT 57.745 30.769 0.00 0.00 46.29 1.82
398 399 7.832503 GCACAACCTGCAAATTATTAGATTT 57.167 32.000 0.00 0.00 46.29 2.17
422 423 7.609760 TTAGACTTTACATGTGCACCTATTG 57.390 36.000 15.69 9.32 0.00 1.90
423 424 8.630054 TTTTAGACTTTACATGTGCACCTATT 57.370 30.769 15.69 0.00 0.00 1.73
424 425 8.807948 ATTTTAGACTTTACATGTGCACCTAT 57.192 30.769 15.69 0.00 0.00 2.57
425 426 9.727859 TTATTTTAGACTTTACATGTGCACCTA 57.272 29.630 15.69 1.90 0.00 3.08
426 427 8.630054 TTATTTTAGACTTTACATGTGCACCT 57.370 30.769 15.69 0.23 0.00 4.00
427 428 9.685828 TTTTATTTTAGACTTTACATGTGCACC 57.314 29.630 15.69 0.00 0.00 5.01
467 468 9.533253 CACCAACATTCTTTTCTCAGTTTATTT 57.467 29.630 0.00 0.00 0.00 1.40
468 469 8.143835 CCACCAACATTCTTTTCTCAGTTTATT 58.856 33.333 0.00 0.00 0.00 1.40
469 470 7.661040 CCACCAACATTCTTTTCTCAGTTTAT 58.339 34.615 0.00 0.00 0.00 1.40
470 471 6.460953 GCCACCAACATTCTTTTCTCAGTTTA 60.461 38.462 0.00 0.00 0.00 2.01
471 472 5.682212 GCCACCAACATTCTTTTCTCAGTTT 60.682 40.000 0.00 0.00 0.00 2.66
472 473 4.202151 GCCACCAACATTCTTTTCTCAGTT 60.202 41.667 0.00 0.00 0.00 3.16
473 474 3.319122 GCCACCAACATTCTTTTCTCAGT 59.681 43.478 0.00 0.00 0.00 3.41
474 475 3.305608 GGCCACCAACATTCTTTTCTCAG 60.306 47.826 0.00 0.00 0.00 3.35
475 476 2.627699 GGCCACCAACATTCTTTTCTCA 59.372 45.455 0.00 0.00 0.00 3.27
476 477 2.627699 TGGCCACCAACATTCTTTTCTC 59.372 45.455 0.00 0.00 0.00 2.87
477 478 2.629617 CTGGCCACCAACATTCTTTTCT 59.370 45.455 0.00 0.00 30.80 2.52
478 479 2.867647 GCTGGCCACCAACATTCTTTTC 60.868 50.000 0.00 0.00 30.80 2.29
479 480 1.070601 GCTGGCCACCAACATTCTTTT 59.929 47.619 0.00 0.00 30.80 2.27
480 481 0.681175 GCTGGCCACCAACATTCTTT 59.319 50.000 0.00 0.00 30.80 2.52
481 482 1.187567 GGCTGGCCACCAACATTCTT 61.188 55.000 16.71 0.00 35.81 2.52
482 483 1.607467 GGCTGGCCACCAACATTCT 60.607 57.895 16.71 0.00 35.81 2.40
483 484 2.973082 GGCTGGCCACCAACATTC 59.027 61.111 16.71 0.00 35.81 2.67
484 485 2.990967 CGGCTGGCCACCAACATT 60.991 61.111 20.10 0.00 35.37 2.71
485 486 3.925630 CTCGGCTGGCCACCAACAT 62.926 63.158 20.10 0.00 35.37 2.71
486 487 4.641645 CTCGGCTGGCCACCAACA 62.642 66.667 20.10 6.40 35.37 3.33
487 488 4.643387 ACTCGGCTGGCCACCAAC 62.643 66.667 20.10 3.91 35.37 3.77
488 489 3.884774 AACTCGGCTGGCCACCAA 61.885 61.111 20.10 5.25 35.37 3.67
489 490 4.641645 CAACTCGGCTGGCCACCA 62.642 66.667 20.10 9.49 35.37 4.17
490 491 4.329545 TCAACTCGGCTGGCCACC 62.330 66.667 0.00 7.93 35.37 4.61
491 492 2.731691 TTCTCAACTCGGCTGGCCAC 62.732 60.000 0.00 0.00 35.37 5.01
492 493 2.050836 TTTCTCAACTCGGCTGGCCA 62.051 55.000 4.71 4.71 35.37 5.36
493 494 0.889186 TTTTCTCAACTCGGCTGGCC 60.889 55.000 0.00 0.00 0.00 5.36
494 495 0.519077 CTTTTCTCAACTCGGCTGGC 59.481 55.000 0.00 0.00 0.00 4.85
495 496 2.169832 TCTTTTCTCAACTCGGCTGG 57.830 50.000 0.00 0.00 0.00 4.85
496 497 3.499918 ACATTCTTTTCTCAACTCGGCTG 59.500 43.478 0.00 0.00 0.00 4.85
497 498 3.744660 ACATTCTTTTCTCAACTCGGCT 58.255 40.909 0.00 0.00 0.00 5.52
498 499 5.220681 GGATACATTCTTTTCTCAACTCGGC 60.221 44.000 0.00 0.00 0.00 5.54
499 500 5.874810 TGGATACATTCTTTTCTCAACTCGG 59.125 40.000 0.00 0.00 46.17 4.63
500 501 6.968131 TGGATACATTCTTTTCTCAACTCG 57.032 37.500 0.00 0.00 46.17 4.18
516 517 9.323985 GCCAAAAATAAGCATTTATTGGATACA 57.676 29.630 17.70 0.00 40.35 2.29
517 518 9.323985 TGCCAAAAATAAGCATTTATTGGATAC 57.676 29.630 17.70 8.44 40.35 2.24
518 519 9.545105 CTGCCAAAAATAAGCATTTATTGGATA 57.455 29.630 17.70 10.40 40.35 2.59
519 520 7.499895 CCTGCCAAAAATAAGCATTTATTGGAT 59.500 33.333 17.70 0.31 40.35 3.41
520 521 6.822676 CCTGCCAAAAATAAGCATTTATTGGA 59.177 34.615 17.70 9.07 40.35 3.53
521 522 6.822676 TCCTGCCAAAAATAAGCATTTATTGG 59.177 34.615 13.31 13.31 40.56 3.16
522 523 7.846644 TCCTGCCAAAAATAAGCATTTATTG 57.153 32.000 0.00 0.00 38.99 1.90
524 525 9.768662 CTATTCCTGCCAAAAATAAGCATTTAT 57.231 29.630 0.00 0.00 35.64 1.40
525 526 7.710475 GCTATTCCTGCCAAAAATAAGCATTTA 59.290 33.333 0.00 0.00 35.64 1.40
526 527 6.539826 GCTATTCCTGCCAAAAATAAGCATTT 59.460 34.615 0.00 0.00 35.64 2.32
527 528 6.051074 GCTATTCCTGCCAAAAATAAGCATT 58.949 36.000 0.00 0.00 35.64 3.56
528 529 5.129155 TGCTATTCCTGCCAAAAATAAGCAT 59.871 36.000 0.00 0.00 35.64 3.79
529 530 4.465660 TGCTATTCCTGCCAAAAATAAGCA 59.534 37.500 0.00 0.00 34.79 3.91
530 531 5.009854 TGCTATTCCTGCCAAAAATAAGC 57.990 39.130 0.00 0.00 0.00 3.09
531 532 6.319658 TCTCTGCTATTCCTGCCAAAAATAAG 59.680 38.462 0.00 0.00 0.00 1.73
532 533 6.186957 TCTCTGCTATTCCTGCCAAAAATAA 58.813 36.000 0.00 0.00 0.00 1.40
533 534 5.754782 TCTCTGCTATTCCTGCCAAAAATA 58.245 37.500 0.00 0.00 0.00 1.40
534 535 4.603131 TCTCTGCTATTCCTGCCAAAAAT 58.397 39.130 0.00 0.00 0.00 1.82
535 536 4.032960 TCTCTGCTATTCCTGCCAAAAA 57.967 40.909 0.00 0.00 0.00 1.94
536 537 3.719268 TCTCTGCTATTCCTGCCAAAA 57.281 42.857 0.00 0.00 0.00 2.44
537 538 3.719268 TTCTCTGCTATTCCTGCCAAA 57.281 42.857 0.00 0.00 0.00 3.28
538 539 3.009473 AGTTTCTCTGCTATTCCTGCCAA 59.991 43.478 0.00 0.00 0.00 4.52
539 540 2.573462 AGTTTCTCTGCTATTCCTGCCA 59.427 45.455 0.00 0.00 0.00 4.92
540 541 3.274095 AGTTTCTCTGCTATTCCTGCC 57.726 47.619 0.00 0.00 0.00 4.85
541 542 5.017294 ACTAGTTTCTCTGCTATTCCTGC 57.983 43.478 0.00 0.00 0.00 4.85
542 543 6.872920 AGAACTAGTTTCTCTGCTATTCCTG 58.127 40.000 10.02 0.00 40.98 3.86
543 544 7.398904 AGAAGAACTAGTTTCTCTGCTATTCCT 59.601 37.037 10.02 0.00 44.41 3.36
544 545 7.552459 AGAAGAACTAGTTTCTCTGCTATTCC 58.448 38.462 10.02 0.00 44.41 3.01
545 546 8.996024 AAGAAGAACTAGTTTCTCTGCTATTC 57.004 34.615 10.02 0.00 44.41 1.75
546 547 9.785982 AAAAGAAGAACTAGTTTCTCTGCTATT 57.214 29.630 10.02 3.75 44.41 1.73
547 548 9.430623 GAAAAGAAGAACTAGTTTCTCTGCTAT 57.569 33.333 10.02 0.00 44.41 2.97
548 549 8.421784 TGAAAAGAAGAACTAGTTTCTCTGCTA 58.578 33.333 10.02 1.33 44.41 3.49
549 550 7.275920 TGAAAAGAAGAACTAGTTTCTCTGCT 58.724 34.615 10.02 3.57 44.41 4.24
550 551 7.225734 ACTGAAAAGAAGAACTAGTTTCTCTGC 59.774 37.037 10.02 0.98 44.41 4.26
551 552 8.547069 CACTGAAAAGAAGAACTAGTTTCTCTG 58.453 37.037 10.02 5.31 44.41 3.35
552 553 7.225734 GCACTGAAAAGAAGAACTAGTTTCTCT 59.774 37.037 10.02 11.47 44.41 3.10
553 554 7.225734 AGCACTGAAAAGAAGAACTAGTTTCTC 59.774 37.037 10.02 9.38 44.41 2.87
555 556 7.252965 AGCACTGAAAAGAAGAACTAGTTTC 57.747 36.000 10.02 4.34 33.95 2.78
556 557 6.018669 CGAGCACTGAAAAGAAGAACTAGTTT 60.019 38.462 10.02 0.00 0.00 2.66
557 558 5.463724 CGAGCACTGAAAAGAAGAACTAGTT 59.536 40.000 8.13 8.13 0.00 2.24
558 559 4.985409 CGAGCACTGAAAAGAAGAACTAGT 59.015 41.667 0.00 0.00 0.00 2.57
559 560 4.985409 ACGAGCACTGAAAAGAAGAACTAG 59.015 41.667 0.00 0.00 0.00 2.57
560 561 4.945246 ACGAGCACTGAAAAGAAGAACTA 58.055 39.130 0.00 0.00 0.00 2.24
561 562 3.798202 ACGAGCACTGAAAAGAAGAACT 58.202 40.909 0.00 0.00 0.00 3.01
562 563 5.847670 ATACGAGCACTGAAAAGAAGAAC 57.152 39.130 0.00 0.00 0.00 3.01
563 564 8.547967 AATAATACGAGCACTGAAAAGAAGAA 57.452 30.769 0.00 0.00 0.00 2.52
564 565 8.547967 AAATAATACGAGCACTGAAAAGAAGA 57.452 30.769 0.00 0.00 0.00 2.87
565 566 9.267096 GAAAATAATACGAGCACTGAAAAGAAG 57.733 33.333 0.00 0.00 0.00 2.85
566 567 8.999431 AGAAAATAATACGAGCACTGAAAAGAA 58.001 29.630 0.00 0.00 0.00 2.52
567 568 8.547967 AGAAAATAATACGAGCACTGAAAAGA 57.452 30.769 0.00 0.00 0.00 2.52
570 571 9.431887 ACTAAGAAAATAATACGAGCACTGAAA 57.568 29.630 0.00 0.00 0.00 2.69
571 572 8.997621 ACTAAGAAAATAATACGAGCACTGAA 57.002 30.769 0.00 0.00 0.00 3.02
572 573 8.997621 AACTAAGAAAATAATACGAGCACTGA 57.002 30.769 0.00 0.00 0.00 3.41
573 574 8.050750 CGAACTAAGAAAATAATACGAGCACTG 58.949 37.037 0.00 0.00 0.00 3.66
574 575 7.758528 ACGAACTAAGAAAATAATACGAGCACT 59.241 33.333 0.00 0.00 0.00 4.40
575 576 7.892803 ACGAACTAAGAAAATAATACGAGCAC 58.107 34.615 0.00 0.00 0.00 4.40
576 577 9.013490 GTACGAACTAAGAAAATAATACGAGCA 57.987 33.333 0.00 0.00 0.00 4.26
577 578 9.230932 AGTACGAACTAAGAAAATAATACGAGC 57.769 33.333 0.00 0.00 32.84 5.03
586 587 9.939802 AAAGATGGTAGTACGAACTAAGAAAAT 57.060 29.630 0.00 0.00 39.90 1.82
587 588 9.415544 GAAAGATGGTAGTACGAACTAAGAAAA 57.584 33.333 0.00 0.00 39.90 2.29
588 589 8.800332 AGAAAGATGGTAGTACGAACTAAGAAA 58.200 33.333 0.00 0.00 39.90 2.52
589 590 8.345724 AGAAAGATGGTAGTACGAACTAAGAA 57.654 34.615 0.00 0.00 39.90 2.52
590 591 7.934855 AGAAAGATGGTAGTACGAACTAAGA 57.065 36.000 0.00 0.00 39.90 2.10
591 592 8.983307 AAAGAAAGATGGTAGTACGAACTAAG 57.017 34.615 0.00 0.00 39.90 2.18
592 593 9.846248 GTAAAGAAAGATGGTAGTACGAACTAA 57.154 33.333 0.00 0.00 39.90 2.24
593 594 9.236006 AGTAAAGAAAGATGGTAGTACGAACTA 57.764 33.333 0.00 0.00 37.15 2.24
594 595 8.120140 AGTAAAGAAAGATGGTAGTACGAACT 57.880 34.615 0.00 0.00 39.91 3.01
595 596 8.645487 CAAGTAAAGAAAGATGGTAGTACGAAC 58.355 37.037 0.00 0.00 0.00 3.95
596 597 8.579006 TCAAGTAAAGAAAGATGGTAGTACGAA 58.421 33.333 0.00 0.00 0.00 3.85
597 598 8.114331 TCAAGTAAAGAAAGATGGTAGTACGA 57.886 34.615 0.00 0.00 0.00 3.43
598 599 8.242053 TCTCAAGTAAAGAAAGATGGTAGTACG 58.758 37.037 0.00 0.00 0.00 3.67
599 600 9.924650 TTCTCAAGTAAAGAAAGATGGTAGTAC 57.075 33.333 0.00 0.00 30.00 2.73
601 602 8.871125 TCTTCTCAAGTAAAGAAAGATGGTAGT 58.129 33.333 0.00 0.00 32.60 2.73
602 603 9.712305 TTCTTCTCAAGTAAAGAAAGATGGTAG 57.288 33.333 0.00 0.00 38.27 3.18
604 605 8.980481 TTTCTTCTCAAGTAAAGAAAGATGGT 57.020 30.769 6.26 0.00 43.17 3.55
608 609 9.408648 ACCATTTTCTTCTCAAGTAAAGAAAGA 57.591 29.630 9.44 3.89 46.47 2.52
617 618 9.793259 TTGTTATCTACCATTTTCTTCTCAAGT 57.207 29.630 0.00 0.00 0.00 3.16
619 620 9.567776 TGTTGTTATCTACCATTTTCTTCTCAA 57.432 29.630 0.00 0.00 0.00 3.02
620 621 8.999431 GTGTTGTTATCTACCATTTTCTTCTCA 58.001 33.333 0.00 0.00 0.00 3.27
621 622 8.451748 GGTGTTGTTATCTACCATTTTCTTCTC 58.548 37.037 0.00 0.00 33.42 2.87
622 623 7.393515 GGGTGTTGTTATCTACCATTTTCTTCT 59.606 37.037 0.00 0.00 34.89 2.85
623 624 7.175990 TGGGTGTTGTTATCTACCATTTTCTTC 59.824 37.037 0.00 0.00 34.89 2.87
624 625 7.007723 TGGGTGTTGTTATCTACCATTTTCTT 58.992 34.615 0.00 0.00 34.89 2.52
625 626 6.548321 TGGGTGTTGTTATCTACCATTTTCT 58.452 36.000 0.00 0.00 34.89 2.52
626 627 6.625081 GCTGGGTGTTGTTATCTACCATTTTC 60.625 42.308 0.00 0.00 34.89 2.29
627 628 5.185056 GCTGGGTGTTGTTATCTACCATTTT 59.815 40.000 0.00 0.00 34.89 1.82
628 629 4.705023 GCTGGGTGTTGTTATCTACCATTT 59.295 41.667 0.00 0.00 34.89 2.32
629 630 4.270008 GCTGGGTGTTGTTATCTACCATT 58.730 43.478 0.00 0.00 34.89 3.16
630 631 3.371595 GGCTGGGTGTTGTTATCTACCAT 60.372 47.826 0.00 0.00 34.89 3.55
631 632 2.026636 GGCTGGGTGTTGTTATCTACCA 60.027 50.000 0.00 0.00 34.89 3.25
632 633 2.026636 TGGCTGGGTGTTGTTATCTACC 60.027 50.000 0.00 0.00 0.00 3.18
633 634 3.343941 TGGCTGGGTGTTGTTATCTAC 57.656 47.619 0.00 0.00 0.00 2.59
634 635 4.584638 AATGGCTGGGTGTTGTTATCTA 57.415 40.909 0.00 0.00 0.00 1.98
635 636 3.456380 AATGGCTGGGTGTTGTTATCT 57.544 42.857 0.00 0.00 0.00 1.98
636 637 4.270008 AGTAATGGCTGGGTGTTGTTATC 58.730 43.478 0.00 0.00 0.00 1.75
637 638 4.316025 AGTAATGGCTGGGTGTTGTTAT 57.684 40.909 0.00 0.00 0.00 1.89
638 639 3.799432 AGTAATGGCTGGGTGTTGTTA 57.201 42.857 0.00 0.00 0.00 2.41
639 640 2.675658 AGTAATGGCTGGGTGTTGTT 57.324 45.000 0.00 0.00 0.00 2.83
640 641 2.675658 AAGTAATGGCTGGGTGTTGT 57.324 45.000 0.00 0.00 0.00 3.32
641 642 3.417101 TGTAAGTAATGGCTGGGTGTTG 58.583 45.455 0.00 0.00 0.00 3.33
642 643 3.799432 TGTAAGTAATGGCTGGGTGTT 57.201 42.857 0.00 0.00 0.00 3.32
643 644 3.799432 TTGTAAGTAATGGCTGGGTGT 57.201 42.857 0.00 0.00 0.00 4.16
644 645 3.119990 CGTTTGTAAGTAATGGCTGGGTG 60.120 47.826 0.00 0.00 0.00 4.61
645 646 3.078837 CGTTTGTAAGTAATGGCTGGGT 58.921 45.455 0.00 0.00 0.00 4.51
646 647 3.078837 ACGTTTGTAAGTAATGGCTGGG 58.921 45.455 0.00 0.00 0.00 4.45
647 648 4.933400 AGTACGTTTGTAAGTAATGGCTGG 59.067 41.667 0.00 0.00 30.94 4.85
648 649 5.670341 GCAGTACGTTTGTAAGTAATGGCTG 60.670 44.000 0.00 0.00 38.76 4.85
649 650 4.390909 GCAGTACGTTTGTAAGTAATGGCT 59.609 41.667 0.00 0.00 38.76 4.75
650 651 4.644954 GCAGTACGTTTGTAAGTAATGGC 58.355 43.478 0.00 0.00 38.76 4.40
651 652 4.093850 GGGCAGTACGTTTGTAAGTAATGG 59.906 45.833 0.00 0.00 38.76 3.16
652 653 4.691685 TGGGCAGTACGTTTGTAAGTAATG 59.308 41.667 0.00 0.00 40.54 1.90
653 654 4.897140 TGGGCAGTACGTTTGTAAGTAAT 58.103 39.130 0.00 0.00 30.94 1.89
654 655 4.333913 TGGGCAGTACGTTTGTAAGTAA 57.666 40.909 0.00 0.00 30.94 2.24
655 656 4.247258 CATGGGCAGTACGTTTGTAAGTA 58.753 43.478 0.00 0.00 30.94 2.24
656 657 2.914695 TGGGCAGTACGTTTGTAAGT 57.085 45.000 0.00 0.00 30.94 2.24
657 658 2.159572 GCATGGGCAGTACGTTTGTAAG 60.160 50.000 0.00 0.00 40.72 2.34
658 659 1.807742 GCATGGGCAGTACGTTTGTAA 59.192 47.619 0.00 0.00 40.72 2.41
659 660 1.444836 GCATGGGCAGTACGTTTGTA 58.555 50.000 0.00 0.00 40.72 2.41
660 661 2.253513 GCATGGGCAGTACGTTTGT 58.746 52.632 0.00 0.00 40.72 2.83
671 672 1.141019 CTGACAATGCTGCATGGGC 59.859 57.895 20.50 18.49 41.68 5.36
672 673 1.141019 GCTGACAATGCTGCATGGG 59.859 57.895 20.50 15.73 33.53 4.00
673 674 0.245266 TTGCTGACAATGCTGCATGG 59.755 50.000 17.00 16.14 41.37 3.66
674 675 2.293677 ATTGCTGACAATGCTGCATG 57.706 45.000 17.00 12.48 44.90 4.06
682 683 7.577979 CAAATTTAGTTTGCATTGCTGACAAT 58.422 30.769 10.49 3.25 41.53 2.71
683 684 6.946165 CAAATTTAGTTTGCATTGCTGACAA 58.054 32.000 10.49 1.17 40.62 3.18
684 685 6.528014 CAAATTTAGTTTGCATTGCTGACA 57.472 33.333 10.49 0.00 40.62 3.58
701 702 9.987272 CTCTAAGATTTTTCCTTGGACAAATTT 57.013 29.630 13.10 6.80 29.90 1.82
702 703 9.147732 ACTCTAAGATTTTTCCTTGGACAAATT 57.852 29.630 13.10 4.55 29.90 1.82
703 704 8.712228 ACTCTAAGATTTTTCCTTGGACAAAT 57.288 30.769 12.07 12.07 29.90 2.32
704 705 8.533569 AACTCTAAGATTTTTCCTTGGACAAA 57.466 30.769 3.81 3.81 29.90 2.83
705 706 9.807921 ATAACTCTAAGATTTTTCCTTGGACAA 57.192 29.630 0.00 0.00 29.90 3.18
706 707 9.807921 AATAACTCTAAGATTTTTCCTTGGACA 57.192 29.630 0.00 0.00 29.90 4.02
754 755 1.935873 CCTGAATCTGTGCACCGTATG 59.064 52.381 15.69 0.00 0.00 2.39
755 756 1.134401 CCCTGAATCTGTGCACCGTAT 60.134 52.381 15.69 1.88 0.00 3.06
756 757 0.249120 CCCTGAATCTGTGCACCGTA 59.751 55.000 15.69 0.00 0.00 4.02
757 758 1.003355 CCCTGAATCTGTGCACCGT 60.003 57.895 15.69 0.00 0.00 4.83
758 759 1.746615 CCCCTGAATCTGTGCACCG 60.747 63.158 15.69 8.41 0.00 4.94
759 760 2.048603 GCCCCTGAATCTGTGCACC 61.049 63.158 15.69 0.00 0.00 5.01
760 761 0.253044 TAGCCCCTGAATCTGTGCAC 59.747 55.000 10.75 10.75 0.00 4.57
761 762 1.216064 ATAGCCCCTGAATCTGTGCA 58.784 50.000 0.00 0.00 0.00 4.57
762 763 2.225467 GAATAGCCCCTGAATCTGTGC 58.775 52.381 0.00 0.00 0.00 4.57
763 764 2.487934 CGAATAGCCCCTGAATCTGTG 58.512 52.381 0.00 0.00 0.00 3.66
764 765 1.417890 CCGAATAGCCCCTGAATCTGT 59.582 52.381 0.00 0.00 0.00 3.41
765 766 1.879796 GCCGAATAGCCCCTGAATCTG 60.880 57.143 0.00 0.00 0.00 2.90
766 767 0.398318 GCCGAATAGCCCCTGAATCT 59.602 55.000 0.00 0.00 0.00 2.40
767 768 0.398318 AGCCGAATAGCCCCTGAATC 59.602 55.000 0.00 0.00 0.00 2.52
768 769 0.398318 GAGCCGAATAGCCCCTGAAT 59.602 55.000 0.00 0.00 0.00 2.57
769 770 1.830145 GAGCCGAATAGCCCCTGAA 59.170 57.895 0.00 0.00 0.00 3.02
770 771 2.498941 CGAGCCGAATAGCCCCTGA 61.499 63.158 0.00 0.00 0.00 3.86
771 772 1.821061 ATCGAGCCGAATAGCCCCTG 61.821 60.000 1.44 0.00 39.99 4.45
772 773 1.122019 AATCGAGCCGAATAGCCCCT 61.122 55.000 1.44 0.00 39.99 4.79
773 774 0.951040 CAATCGAGCCGAATAGCCCC 60.951 60.000 1.44 0.00 39.99 5.80
774 775 0.249911 ACAATCGAGCCGAATAGCCC 60.250 55.000 1.44 0.00 39.99 5.19
775 776 1.140816 GACAATCGAGCCGAATAGCC 58.859 55.000 1.44 0.00 39.99 3.93
776 777 2.055100 GAGACAATCGAGCCGAATAGC 58.945 52.381 1.44 0.00 39.99 2.97
788 789 2.159184 TGACAGCAGATCCGAGACAATC 60.159 50.000 0.00 0.00 0.00 2.67
789 790 1.827344 TGACAGCAGATCCGAGACAAT 59.173 47.619 0.00 0.00 0.00 2.71
790 791 1.256812 TGACAGCAGATCCGAGACAA 58.743 50.000 0.00 0.00 0.00 3.18
791 792 1.256812 TTGACAGCAGATCCGAGACA 58.743 50.000 0.00 0.00 0.00 3.41
792 793 2.593346 ATTGACAGCAGATCCGAGAC 57.407 50.000 0.00 0.00 0.00 3.36
793 794 2.497273 TGAATTGACAGCAGATCCGAGA 59.503 45.455 0.00 0.00 0.00 4.04
794 795 2.606725 GTGAATTGACAGCAGATCCGAG 59.393 50.000 0.00 0.00 0.00 4.63
795 796 2.028203 TGTGAATTGACAGCAGATCCGA 60.028 45.455 0.00 0.00 0.00 4.55
796 797 2.349590 TGTGAATTGACAGCAGATCCG 58.650 47.619 0.00 0.00 0.00 4.18
797 798 3.488721 GCATGTGAATTGACAGCAGATCC 60.489 47.826 3.63 0.00 0.00 3.36
798 799 3.488721 GGCATGTGAATTGACAGCAGATC 60.489 47.826 16.51 0.00 0.00 2.75
799 800 2.426024 GGCATGTGAATTGACAGCAGAT 59.574 45.455 16.51 0.00 0.00 2.90
800 801 1.814394 GGCATGTGAATTGACAGCAGA 59.186 47.619 16.51 0.00 0.00 4.26
801 802 1.542472 TGGCATGTGAATTGACAGCAG 59.458 47.619 16.51 6.30 0.00 4.24
859 863 6.068670 AGTGCTTACAGAAACCAAACCTAAT 58.931 36.000 0.00 0.00 0.00 1.73
872 876 3.253188 GCATTCAACCAAGTGCTTACAGA 59.747 43.478 0.00 0.00 34.85 3.41
881 885 1.331214 CCCACAGCATTCAACCAAGT 58.669 50.000 0.00 0.00 0.00 3.16
893 897 0.674895 CTACAAGGAGTGCCCACAGC 60.675 60.000 0.82 0.00 44.14 4.40
934 945 1.145738 AGTTTTGTCAGGCTGGACCAT 59.854 47.619 15.73 0.00 43.14 3.55
973 986 4.327357 AGTGACTGACGAAAATATCAAGCG 59.673 41.667 0.00 0.00 0.00 4.68
998 1011 2.281539 TGAGCAATCCTATGGCATGG 57.718 50.000 10.98 7.13 0.00 3.66
1010 1025 3.985127 TCTTCCCCATTGATTGAGCAAT 58.015 40.909 0.00 0.00 38.96 3.56
1023 1038 4.726825 AGGTATTGCTTCTTATCTTCCCCA 59.273 41.667 0.00 0.00 0.00 4.96
1031 1046 7.305474 CGTGTGAAAAAGGTATTGCTTCTTAT 58.695 34.615 0.00 0.00 0.00 1.73
1035 1050 4.226761 CCGTGTGAAAAAGGTATTGCTTC 58.773 43.478 0.00 0.00 0.00 3.86
1059 1074 3.123050 CACTATGATTGGATCGCGACAA 58.877 45.455 12.93 13.38 0.00 3.18
1064 1084 5.233050 CGGATAATCACTATGATTGGATCGC 59.767 44.000 13.15 4.50 45.77 4.58
1067 1087 8.082672 TGATCGGATAATCACTATGATTGGAT 57.917 34.615 13.15 10.13 45.77 3.41
1072 1092 8.071177 TCACATGATCGGATAATCACTATGAT 57.929 34.615 0.00 0.00 38.43 2.45
1095 1119 0.324738 AGGAGCCTCCAATCGTCTCA 60.325 55.000 14.46 0.00 39.61 3.27
1135 1163 3.377253 AGAGTAACGGACCACCAGATA 57.623 47.619 0.00 0.00 35.59 1.98
1136 1164 2.233305 AGAGTAACGGACCACCAGAT 57.767 50.000 0.00 0.00 35.59 2.90
1158 1186 7.201830 CCAGTTAGTGCTAAGAGCTAATCTACA 60.202 40.741 0.00 0.00 42.97 2.74
1182 1213 4.202357 GCATGTTGGTCCTATCTACATCCA 60.202 45.833 0.00 0.00 0.00 3.41
1183 1214 4.202357 TGCATGTTGGTCCTATCTACATCC 60.202 45.833 0.00 0.00 0.00 3.51
1191 1222 2.481441 TCTCCTGCATGTTGGTCCTAT 58.519 47.619 0.00 0.00 0.00 2.57
1291 2600 0.396435 TGTGCCTGTAGTTGAGTGGG 59.604 55.000 0.00 0.00 0.00 4.61
1342 2651 1.978454 CCTTTCCATCCCTGCTGATC 58.022 55.000 0.00 0.00 0.00 2.92
1363 2672 5.055265 TCCAATGGAACTTAACAAGGTGA 57.945 39.130 0.00 0.00 0.00 4.02
1402 2711 4.272991 GCTTCATCATCTAAGAGGCACTTG 59.727 45.833 7.48 0.00 41.55 3.16
1548 2857 5.474876 ACATCAAGAGGGTCAAAGTCAAATC 59.525 40.000 0.00 0.00 0.00 2.17
1642 2951 5.547341 TCGTTTTCTGCGAAGAAATTATCG 58.453 37.500 19.31 18.78 41.81 2.92
1663 2972 3.083213 GCAGAAAGCAAGCTGTTCG 57.917 52.632 0.00 1.40 44.79 3.95
1838 3148 5.170021 TGTGCATGAAATTCATTAAGCCAC 58.830 37.500 5.63 8.95 34.28 5.01
1896 3206 1.041447 ATGCAAGCAGAAGGGGATGC 61.041 55.000 0.00 0.00 42.87 3.91
1954 3264 7.913297 TGCAGTGAACTTGAAACATAACTTAAC 59.087 33.333 0.00 0.00 0.00 2.01
1955 3265 7.990917 TGCAGTGAACTTGAAACATAACTTAA 58.009 30.769 0.00 0.00 0.00 1.85
1957 3267 6.095440 ACTGCAGTGAACTTGAAACATAACTT 59.905 34.615 20.97 0.00 0.00 2.66
2064 3375 1.248486 CAGACAGAACACGAGGAGGA 58.752 55.000 0.00 0.00 0.00 3.71
2079 3390 2.282180 TTTTCCCGGCAGCCAGAC 60.282 61.111 13.30 0.00 0.00 3.51
2094 3405 8.133024 TCTAACATTCCAATTTGCATACCTTT 57.867 30.769 0.00 0.00 0.00 3.11
2119 3430 9.694137 GGCAGTAGTACGAATAGAATTAGAATT 57.306 33.333 0.00 0.00 0.00 2.17
2121 3432 8.229253 TGGCAGTAGTACGAATAGAATTAGAA 57.771 34.615 0.00 0.00 0.00 2.10
2122 3433 7.501559 ACTGGCAGTAGTACGAATAGAATTAGA 59.498 37.037 20.61 0.00 0.00 2.10
2123 3434 7.649973 ACTGGCAGTAGTACGAATAGAATTAG 58.350 38.462 20.61 0.00 0.00 1.73
2124 3435 7.255381 GGACTGGCAGTAGTACGAATAGAATTA 60.255 40.741 22.11 0.00 0.00 1.40
2131 3442 1.755380 GGGACTGGCAGTAGTACGAAT 59.245 52.381 22.11 0.00 32.01 3.34
2132 3443 1.180029 GGGACTGGCAGTAGTACGAA 58.820 55.000 22.11 0.00 32.01 3.85
2135 3446 2.935676 GCAAAGGGACTGGCAGTAGTAC 60.936 54.545 22.11 7.89 40.86 2.73
2136 3447 1.278127 GCAAAGGGACTGGCAGTAGTA 59.722 52.381 22.11 0.00 40.86 1.82
2147 3458 1.544724 TTGGCTACATGCAAAGGGAC 58.455 50.000 0.00 0.00 45.15 4.46
2150 3461 2.297033 ACAGTTTGGCTACATGCAAAGG 59.703 45.455 0.00 0.00 45.15 3.11
2151 3462 3.648339 ACAGTTTGGCTACATGCAAAG 57.352 42.857 0.00 0.00 45.15 2.77
2152 3463 4.367450 GAAACAGTTTGGCTACATGCAAA 58.633 39.130 2.34 0.00 45.15 3.68
2153 3464 3.243704 GGAAACAGTTTGGCTACATGCAA 60.244 43.478 2.34 0.00 45.15 4.08
2154 3465 2.295909 GGAAACAGTTTGGCTACATGCA 59.704 45.455 2.34 0.00 45.15 3.96
2155 3466 2.295909 TGGAAACAGTTTGGCTACATGC 59.704 45.455 2.34 0.00 37.00 4.06
2195 3510 9.890629 ACAGAGTATTTTAGTCATCATTAGCAA 57.109 29.630 0.00 0.00 0.00 3.91
2196 3511 9.317936 CACAGAGTATTTTAGTCATCATTAGCA 57.682 33.333 0.00 0.00 0.00 3.49
2197 3512 9.534565 TCACAGAGTATTTTAGTCATCATTAGC 57.465 33.333 0.00 0.00 0.00 3.09
2230 3545 5.766150 TTTGTCAAAACACATGGTAGGAG 57.234 39.130 0.00 0.00 34.35 3.69
2231 3546 6.097554 ACAATTTGTCAAAACACATGGTAGGA 59.902 34.615 1.31 0.00 29.68 2.94
2234 3549 7.413438 GCAAACAATTTGTCAAAACACATGGTA 60.413 33.333 1.83 0.00 42.56 3.25
2235 3550 6.622462 GCAAACAATTTGTCAAAACACATGGT 60.622 34.615 1.83 0.00 42.56 3.55
2236 3551 5.738225 GCAAACAATTTGTCAAAACACATGG 59.262 36.000 1.83 0.00 42.56 3.66
2238 3553 6.740411 AGCAAACAATTTGTCAAAACACAT 57.260 29.167 1.83 0.00 42.56 3.21
2239 3554 6.646653 TGTAGCAAACAATTTGTCAAAACACA 59.353 30.769 1.83 1.43 42.56 3.72
2240 3555 7.054855 TGTAGCAAACAATTTGTCAAAACAC 57.945 32.000 1.83 0.00 42.56 3.32
2241 3556 7.840342 ATGTAGCAAACAATTTGTCAAAACA 57.160 28.000 1.83 5.11 42.70 2.83
2242 3557 8.997960 CAAATGTAGCAAACAATTTGTCAAAAC 58.002 29.630 1.83 0.00 42.70 2.43
2254 3572 8.821894 GTTCCAAAATTACAAATGTAGCAAACA 58.178 29.630 0.00 0.00 43.86 2.83
2271 3589 5.220777 CGATAATACACCGCAGTTCCAAAAT 60.221 40.000 0.00 0.00 0.00 1.82
2284 3602 8.649973 ATTGTTCTCTTTCTCGATAATACACC 57.350 34.615 0.00 0.00 0.00 4.16
2300 3618 3.255149 CAGCCTGCTTGAAATTGTTCTCT 59.745 43.478 0.00 0.00 34.60 3.10
2383 3701 5.734720 TCTTCTATGTGCCTAAAGACTTGG 58.265 41.667 0.00 0.00 0.00 3.61
2447 3766 2.443957 GAAACGGTCTTGCCTGCGTG 62.444 60.000 0.00 0.00 34.25 5.34
2450 3769 1.578206 GAGGAAACGGTCTTGCCTGC 61.578 60.000 0.00 0.00 34.25 4.85
2532 3851 3.510360 AGTGTACCTGTGACCAGTATGAC 59.490 47.826 0.00 0.00 39.69 3.06
2601 3946 8.055181 AGTGTGTTTCAATAATCCCAGATACAT 58.945 33.333 0.00 0.00 0.00 2.29
2618 3963 3.859411 TGGTTGGTTTCAGTGTGTTTC 57.141 42.857 0.00 0.00 0.00 2.78
2731 4077 2.180276 GAGCCACTGGTTCTCTCCTTA 58.820 52.381 4.70 0.00 30.11 2.69
2732 4078 0.980423 GAGCCACTGGTTCTCTCCTT 59.020 55.000 4.70 0.00 30.11 3.36
2771 4117 1.002274 ACCCTCCTTGGCTCGATCT 59.998 57.895 0.00 0.00 0.00 2.75
2806 4153 0.036010 GCTACACCCACAGAGCACAT 60.036 55.000 0.00 0.00 34.96 3.21
2810 4158 0.745845 CATGGCTACACCCACAGAGC 60.746 60.000 0.00 0.00 37.79 4.09
2813 4161 2.425143 ATTCATGGCTACACCCACAG 57.575 50.000 0.00 0.00 37.79 3.66
2886 4234 0.034863 ACCGGTTCACAACACCAACT 60.035 50.000 0.00 0.00 33.36 3.16
2889 4237 0.322636 AACACCGGTTCACAACACCA 60.323 50.000 2.97 0.00 33.36 4.17
2918 4275 2.543031 GCACAGACACAGTACGACAGAA 60.543 50.000 0.00 0.00 0.00 3.02
3032 4396 0.535780 TGAAACAGCAGTGGCAGGAG 60.536 55.000 0.00 0.00 44.61 3.69
3069 4439 8.641499 TTAGGTGCACTTTTGTTTATGAAAAG 57.359 30.769 17.98 0.00 43.27 2.27
3150 4522 6.049790 AGGTTGTCTGACAGACTCTAAAAAC 58.950 40.000 30.51 24.10 45.27 2.43
3151 4523 6.098409 AGAGGTTGTCTGACAGACTCTAAAAA 59.902 38.462 29.13 16.10 45.27 1.94
3156 4534 3.237268 AGAGGTTGTCTGACAGACTCT 57.763 47.619 30.51 26.81 45.27 3.24
3177 4558 3.644606 CTCTGTGCAGGGTGGCCT 61.645 66.667 3.32 0.00 0.00 5.19
3314 4781 2.419574 GGAGCGGCACCAGTTTATAAGA 60.420 50.000 11.78 0.00 0.00 2.10
3348 4815 2.488836 CCCCTACATTAGTCCCACCTT 58.511 52.381 0.00 0.00 0.00 3.50
3446 4959 1.764571 TATATGCACAGGGTCGGGGC 61.765 60.000 0.00 0.00 0.00 5.80
3477 4990 1.474332 TAAGGCCCGTCTTGTTCGGT 61.474 55.000 0.00 0.00 45.63 4.69
3499 5012 1.076533 ACAGTACGTGCGCTACATGC 61.077 55.000 9.73 0.00 39.03 4.06
3566 5503 4.363138 TGAGATGGATCGATTGAAACGAG 58.637 43.478 0.00 0.00 42.81 4.18
3568 5505 6.200854 TGTTATGAGATGGATCGATTGAAACG 59.799 38.462 0.00 0.00 0.00 3.60
3569 5506 7.348201 GTGTTATGAGATGGATCGATTGAAAC 58.652 38.462 0.00 0.00 0.00 2.78
3573 5510 5.299949 TGGTGTTATGAGATGGATCGATTG 58.700 41.667 0.00 0.00 0.00 2.67
3576 5513 3.243873 GCTGGTGTTATGAGATGGATCGA 60.244 47.826 0.00 0.00 0.00 3.59
3577 5514 3.062763 GCTGGTGTTATGAGATGGATCG 58.937 50.000 0.00 0.00 0.00 3.69
3578 5515 3.406764 GGCTGGTGTTATGAGATGGATC 58.593 50.000 0.00 0.00 0.00 3.36
3588 5840 2.125269 GACGGCGGCTGGTGTTAT 60.125 61.111 13.24 0.00 0.00 1.89
3613 5865 2.047830 GGGGAACGAGGATACAGGAAT 58.952 52.381 0.00 0.00 41.41 3.01
3636 5888 1.038130 GCTTCGGGAGTAGGAGCAGA 61.038 60.000 0.00 0.00 0.00 4.26
3638 5890 0.687757 ATGCTTCGGGAGTAGGAGCA 60.688 55.000 1.37 1.37 30.19 4.26
3661 5913 4.589216 TCCATTAATTTGCTAGGCATGC 57.411 40.909 9.90 9.90 38.76 4.06
3663 5915 7.325694 GCAATATCCATTAATTTGCTAGGCAT 58.674 34.615 12.48 0.00 38.76 4.40
3689 5941 7.072454 AGGGTATCAAAGGAATCAAGTATAGCA 59.928 37.037 0.00 0.00 0.00 3.49
3696 7183 6.660949 ACTGAAAGGGTATCAAAGGAATCAAG 59.339 38.462 0.00 0.00 39.30 3.02
3713 7200 4.904241 AGTGAGATGGAGAAACTGAAAGG 58.096 43.478 0.00 0.00 39.30 3.11
3757 7342 2.414824 GCCGTCCGCTAGATGAGAATAG 60.415 54.545 0.00 0.00 32.76 1.73
3760 7345 1.734137 GCCGTCCGCTAGATGAGAA 59.266 57.895 0.00 0.00 32.76 2.87
3778 7363 0.107456 AGTGTTGTCTCTGCCTGTGG 59.893 55.000 0.00 0.00 0.00 4.17
3779 7364 1.869767 GAAGTGTTGTCTCTGCCTGTG 59.130 52.381 0.00 0.00 0.00 3.66
3780 7365 1.486310 TGAAGTGTTGTCTCTGCCTGT 59.514 47.619 0.00 0.00 0.00 4.00
3783 7368 3.126000 GCTTATGAAGTGTTGTCTCTGCC 59.874 47.826 0.00 0.00 0.00 4.85
3786 7371 5.011533 ACTGAGCTTATGAAGTGTTGTCTCT 59.988 40.000 0.00 0.00 0.00 3.10
3787 7372 5.233988 ACTGAGCTTATGAAGTGTTGTCTC 58.766 41.667 0.00 0.00 0.00 3.36
3788 7373 5.220710 ACTGAGCTTATGAAGTGTTGTCT 57.779 39.130 0.00 0.00 0.00 3.41
3789 7374 5.931441 AACTGAGCTTATGAAGTGTTGTC 57.069 39.130 0.00 0.00 0.00 3.18
3791 7376 7.426929 AAGTAACTGAGCTTATGAAGTGTTG 57.573 36.000 0.00 0.00 0.00 3.33
3793 7378 6.073003 GCAAAGTAACTGAGCTTATGAAGTGT 60.073 38.462 0.00 0.00 0.00 3.55
3794 7379 6.073058 TGCAAAGTAACTGAGCTTATGAAGTG 60.073 38.462 0.00 0.00 0.00 3.16
3795 7380 5.997746 TGCAAAGTAACTGAGCTTATGAAGT 59.002 36.000 0.00 0.00 0.00 3.01
3796 7381 6.486253 TGCAAAGTAACTGAGCTTATGAAG 57.514 37.500 0.00 0.00 0.00 3.02
3798 7383 6.486253 CTTGCAAAGTAACTGAGCTTATGA 57.514 37.500 0.00 0.00 39.70 2.15
3817 7402 1.962144 ATGTCCTGCTGCAACTTGC 59.038 52.632 6.82 6.82 45.29 4.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.