Multiple sequence alignment - TraesCS7A01G547700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G547700 chr7A 100.000 3006 0 0 1 3006 722688691 722691696 0 5552
1 TraesCS7A01G547700 chr7A 99.129 459 4 0 1 459 287350457 287350915 0 826
2 TraesCS7A01G547700 chr7A 98.710 465 5 1 1 464 670617260 670617724 0 824
3 TraesCS7A01G547700 chr7A 98.501 467 5 1 1 467 650989737 650990201 0 822
4 TraesCS7A01G547700 chr7A 98.704 463 6 0 1 463 653404271 653404733 0 822
5 TraesCS7A01G547700 chr6A 97.884 2552 47 7 459 3006 494432143 494429595 0 4407
6 TraesCS7A01G547700 chr6A 97.144 2556 62 6 459 3006 184599271 184601823 0 4305
7 TraesCS7A01G547700 chr3A 96.869 2555 69 6 459 3006 450963901 450961351 0 4265
8 TraesCS7A01G547700 chr3A 98.498 466 6 1 1 465 625292426 625291961 0 821
9 TraesCS7A01G547700 chr7D 93.633 2560 127 24 459 3006 54979586 54977051 0 3792
10 TraesCS7A01G547700 chr7D 92.888 2559 140 32 459 3002 135386210 135383679 0 3679
11 TraesCS7A01G547700 chr4D 93.479 2561 136 25 459 3006 65869624 65872166 0 3775
12 TraesCS7A01G547700 chr1D 93.206 2561 140 27 459 3006 108782583 108785122 0 3735
13 TraesCS7A01G547700 chr3D 93.120 2558 146 26 459 3006 175415400 175417937 0 3722
14 TraesCS7A01G547700 chr5D 92.810 2559 150 21 459 3006 526640053 526637518 0 3675
15 TraesCS7A01G547700 chr4A 99.130 460 4 0 1 460 581349610 581350069 0 828
16 TraesCS7A01G547700 chr2A 98.915 461 5 0 1 461 198970582 198971042 0 824
17 TraesCS7A01G547700 chr2A 98.701 462 6 0 1 462 21392451 21392912 0 821
18 TraesCS7A01G547700 chr5A 98.287 467 6 2 1 467 634017202 634017666 0 817


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G547700 chr7A 722688691 722691696 3005 False 5552 5552 100.000 1 3006 1 chr7A.!!$F5 3005
1 TraesCS7A01G547700 chr6A 494429595 494432143 2548 True 4407 4407 97.884 459 3006 1 chr6A.!!$R1 2547
2 TraesCS7A01G547700 chr6A 184599271 184601823 2552 False 4305 4305 97.144 459 3006 1 chr6A.!!$F1 2547
3 TraesCS7A01G547700 chr3A 450961351 450963901 2550 True 4265 4265 96.869 459 3006 1 chr3A.!!$R1 2547
4 TraesCS7A01G547700 chr7D 54977051 54979586 2535 True 3792 3792 93.633 459 3006 1 chr7D.!!$R1 2547
5 TraesCS7A01G547700 chr7D 135383679 135386210 2531 True 3679 3679 92.888 459 3002 1 chr7D.!!$R2 2543
6 TraesCS7A01G547700 chr4D 65869624 65872166 2542 False 3775 3775 93.479 459 3006 1 chr4D.!!$F1 2547
7 TraesCS7A01G547700 chr1D 108782583 108785122 2539 False 3735 3735 93.206 459 3006 1 chr1D.!!$F1 2547
8 TraesCS7A01G547700 chr3D 175415400 175417937 2537 False 3722 3722 93.120 459 3006 1 chr3D.!!$F1 2547
9 TraesCS7A01G547700 chr5D 526637518 526640053 2535 True 3675 3675 92.810 459 3006 1 chr5D.!!$R1 2547

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
185 186 0.249398 AAACGATCGGGTGCTAAGCT 59.751 50.0 20.98 0.0 0.00 3.74 F
186 187 1.108776 AACGATCGGGTGCTAAGCTA 58.891 50.0 20.98 0.0 0.00 3.32 F
1866 1879 0.953471 TTCGCACTGCTTAACGCCAT 60.953 50.0 0.00 0.0 38.05 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1866 1879 1.066430 GTTGGCTACCATTCCACTCGA 60.066 52.381 0.0 0.0 31.53 4.04 R
1955 1968 3.884704 ATGGGGCGGTGTTGTGCAT 62.885 57.895 0.0 0.0 0.00 3.96 R
2933 2974 0.533032 GACCTACAGGCAGGACTCAC 59.467 60.000 0.0 0.0 39.18 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.603965 AACCCAACATGTACCTTTGGA 57.396 42.857 13.97 0.00 42.17 3.53
21 22 3.154827 ACCCAACATGTACCTTTGGAG 57.845 47.619 13.97 7.50 42.17 3.86
22 23 2.714250 ACCCAACATGTACCTTTGGAGA 59.286 45.455 13.97 0.00 42.17 3.71
23 24 3.081804 CCCAACATGTACCTTTGGAGAC 58.918 50.000 13.97 0.00 42.17 3.36
24 25 3.497763 CCCAACATGTACCTTTGGAGACA 60.498 47.826 13.97 0.00 42.17 3.41
25 26 3.502211 CCAACATGTACCTTTGGAGACAC 59.498 47.826 7.62 0.00 42.17 3.67
26 27 3.418684 ACATGTACCTTTGGAGACACC 57.581 47.619 0.00 0.00 42.67 4.16
27 28 2.979678 ACATGTACCTTTGGAGACACCT 59.020 45.455 0.00 0.00 42.67 4.00
28 29 3.244561 ACATGTACCTTTGGAGACACCTG 60.245 47.826 0.00 0.00 42.67 4.00
29 30 2.404559 TGTACCTTTGGAGACACCTGT 58.595 47.619 0.00 0.00 42.67 4.00
30 31 3.578978 TGTACCTTTGGAGACACCTGTA 58.421 45.455 0.00 0.00 42.67 2.74
31 32 3.968649 TGTACCTTTGGAGACACCTGTAA 59.031 43.478 0.00 0.00 42.67 2.41
32 33 4.595781 TGTACCTTTGGAGACACCTGTAAT 59.404 41.667 0.00 0.00 42.67 1.89
33 34 4.021102 ACCTTTGGAGACACCTGTAATG 57.979 45.455 0.00 0.00 42.67 1.90
34 35 2.749621 CCTTTGGAGACACCTGTAATGC 59.250 50.000 0.00 0.00 42.67 3.56
35 36 3.560025 CCTTTGGAGACACCTGTAATGCT 60.560 47.826 0.00 0.00 42.67 3.79
36 37 3.334583 TTGGAGACACCTGTAATGCTC 57.665 47.619 0.00 0.00 42.67 4.26
37 38 1.555075 TGGAGACACCTGTAATGCTCC 59.445 52.381 0.00 0.00 39.17 4.70
38 39 1.834263 GGAGACACCTGTAATGCTCCT 59.166 52.381 0.00 0.00 37.38 3.69
39 40 2.237392 GGAGACACCTGTAATGCTCCTT 59.763 50.000 0.00 0.00 37.38 3.36
40 41 3.307762 GGAGACACCTGTAATGCTCCTTT 60.308 47.826 0.00 0.00 37.38 3.11
41 42 4.081087 GGAGACACCTGTAATGCTCCTTTA 60.081 45.833 0.00 0.00 37.38 1.85
42 43 5.396884 GGAGACACCTGTAATGCTCCTTTAT 60.397 44.000 0.00 0.00 37.38 1.40
43 44 6.183360 GGAGACACCTGTAATGCTCCTTTATA 60.183 42.308 0.00 0.00 37.38 0.98
44 45 7.195374 AGACACCTGTAATGCTCCTTTATAA 57.805 36.000 0.00 0.00 0.00 0.98
45 46 7.806180 AGACACCTGTAATGCTCCTTTATAAT 58.194 34.615 0.00 0.00 0.00 1.28
46 47 7.934120 AGACACCTGTAATGCTCCTTTATAATC 59.066 37.037 0.00 0.00 0.00 1.75
47 48 7.573710 ACACCTGTAATGCTCCTTTATAATCA 58.426 34.615 0.00 0.00 0.00 2.57
48 49 7.499232 ACACCTGTAATGCTCCTTTATAATCAC 59.501 37.037 0.00 0.00 0.00 3.06
49 50 6.998673 ACCTGTAATGCTCCTTTATAATCACC 59.001 38.462 0.00 0.00 0.00 4.02
50 51 6.431234 CCTGTAATGCTCCTTTATAATCACCC 59.569 42.308 0.00 0.00 0.00 4.61
51 52 6.905736 TGTAATGCTCCTTTATAATCACCCA 58.094 36.000 0.00 0.00 0.00 4.51
52 53 6.998074 TGTAATGCTCCTTTATAATCACCCAG 59.002 38.462 0.00 0.00 0.00 4.45
53 54 5.653255 ATGCTCCTTTATAATCACCCAGT 57.347 39.130 0.00 0.00 0.00 4.00
54 55 5.450818 TGCTCCTTTATAATCACCCAGTT 57.549 39.130 0.00 0.00 0.00 3.16
55 56 6.569127 TGCTCCTTTATAATCACCCAGTTA 57.431 37.500 0.00 0.00 0.00 2.24
56 57 6.354130 TGCTCCTTTATAATCACCCAGTTAC 58.646 40.000 0.00 0.00 0.00 2.50
57 58 5.465724 GCTCCTTTATAATCACCCAGTTACG 59.534 44.000 0.00 0.00 0.00 3.18
58 59 6.549433 TCCTTTATAATCACCCAGTTACGT 57.451 37.500 0.00 0.00 0.00 3.57
59 60 6.949715 TCCTTTATAATCACCCAGTTACGTT 58.050 36.000 0.00 0.00 0.00 3.99
60 61 6.819649 TCCTTTATAATCACCCAGTTACGTTG 59.180 38.462 0.00 0.00 0.00 4.10
61 62 6.596497 CCTTTATAATCACCCAGTTACGTTGT 59.404 38.462 0.00 0.00 0.00 3.32
62 63 6.971527 TTATAATCACCCAGTTACGTTGTG 57.028 37.500 0.00 0.00 0.00 3.33
63 64 3.478857 AATCACCCAGTTACGTTGTGA 57.521 42.857 0.00 6.41 39.95 3.58
64 65 2.228138 TCACCCAGTTACGTTGTGAC 57.772 50.000 0.00 0.00 31.45 3.67
76 77 3.758521 CGTTGTGACGTTTGGTAGTAC 57.241 47.619 0.00 0.00 44.08 2.73
77 78 2.472488 CGTTGTGACGTTTGGTAGTACC 59.528 50.000 12.80 12.80 44.08 3.34
78 79 2.802247 GTTGTGACGTTTGGTAGTACCC 59.198 50.000 16.91 0.45 37.50 3.69
79 80 2.037901 TGTGACGTTTGGTAGTACCCA 58.962 47.619 16.91 2.52 37.50 4.51
80 81 2.433604 TGTGACGTTTGGTAGTACCCAA 59.566 45.455 16.91 9.33 42.69 4.12
88 89 4.563140 TTGGTAGTACCCAAAGTGATCC 57.437 45.455 16.91 0.00 41.47 3.36
89 90 3.798515 TGGTAGTACCCAAAGTGATCCT 58.201 45.455 16.91 0.00 37.50 3.24
90 91 3.773119 TGGTAGTACCCAAAGTGATCCTC 59.227 47.826 16.91 0.00 37.50 3.71
91 92 3.134262 GGTAGTACCCAAAGTGATCCTCC 59.866 52.174 8.27 0.00 30.04 4.30
92 93 1.831736 AGTACCCAAAGTGATCCTCCG 59.168 52.381 0.00 0.00 0.00 4.63
93 94 1.829222 GTACCCAAAGTGATCCTCCGA 59.171 52.381 0.00 0.00 0.00 4.55
94 95 1.584724 ACCCAAAGTGATCCTCCGAT 58.415 50.000 0.00 0.00 0.00 4.18
95 96 2.759355 ACCCAAAGTGATCCTCCGATA 58.241 47.619 0.00 0.00 0.00 2.92
96 97 3.112263 ACCCAAAGTGATCCTCCGATAA 58.888 45.455 0.00 0.00 0.00 1.75
97 98 3.521937 ACCCAAAGTGATCCTCCGATAAA 59.478 43.478 0.00 0.00 0.00 1.40
98 99 3.877508 CCCAAAGTGATCCTCCGATAAAC 59.122 47.826 0.00 0.00 0.00 2.01
99 100 3.555956 CCAAAGTGATCCTCCGATAAACG 59.444 47.826 0.00 0.00 42.18 3.60
117 118 3.845781 ACGGGAGTTGCATAATCTCAT 57.154 42.857 0.00 0.00 43.33 2.90
118 119 4.955811 ACGGGAGTTGCATAATCTCATA 57.044 40.909 0.00 0.00 43.33 2.15
119 120 4.887748 ACGGGAGTTGCATAATCTCATAG 58.112 43.478 0.00 0.00 43.33 2.23
120 121 4.345257 ACGGGAGTTGCATAATCTCATAGT 59.655 41.667 0.00 0.00 43.33 2.12
121 122 5.163301 ACGGGAGTTGCATAATCTCATAGTT 60.163 40.000 0.00 0.00 43.33 2.24
122 123 6.041637 ACGGGAGTTGCATAATCTCATAGTTA 59.958 38.462 0.00 0.00 43.33 2.24
123 124 7.099764 CGGGAGTTGCATAATCTCATAGTTAT 58.900 38.462 0.00 0.00 0.00 1.89
124 125 8.251026 CGGGAGTTGCATAATCTCATAGTTATA 58.749 37.037 0.00 0.00 0.00 0.98
125 126 9.593134 GGGAGTTGCATAATCTCATAGTTATAG 57.407 37.037 0.00 0.00 0.00 1.31
126 127 9.593134 GGAGTTGCATAATCTCATAGTTATAGG 57.407 37.037 0.00 0.00 0.00 2.57
150 151 9.388506 AGGAACATGTATAAGTCATGAAGAAAG 57.611 33.333 0.00 0.00 43.47 2.62
151 152 8.125448 GGAACATGTATAAGTCATGAAGAAAGC 58.875 37.037 0.00 0.00 43.47 3.51
152 153 8.565896 AACATGTATAAGTCATGAAGAAAGCA 57.434 30.769 0.00 0.00 43.47 3.91
153 154 8.565896 ACATGTATAAGTCATGAAGAAAGCAA 57.434 30.769 11.92 0.00 43.47 3.91
154 155 9.182214 ACATGTATAAGTCATGAAGAAAGCAAT 57.818 29.630 11.92 0.00 43.47 3.56
157 158 8.830580 TGTATAAGTCATGAAGAAAGCAATAGC 58.169 33.333 0.00 0.00 42.56 2.97
158 159 7.870509 ATAAGTCATGAAGAAAGCAATAGCA 57.129 32.000 0.00 0.00 45.49 3.49
159 160 6.579666 AAGTCATGAAGAAAGCAATAGCAA 57.420 33.333 0.00 0.00 45.49 3.91
160 161 5.947443 AGTCATGAAGAAAGCAATAGCAAC 58.053 37.500 0.00 0.00 45.49 4.17
161 162 5.474532 AGTCATGAAGAAAGCAATAGCAACA 59.525 36.000 0.00 0.00 45.49 3.33
162 163 6.152323 AGTCATGAAGAAAGCAATAGCAACAT 59.848 34.615 0.00 0.00 45.49 2.71
163 164 7.337689 AGTCATGAAGAAAGCAATAGCAACATA 59.662 33.333 0.00 0.00 45.49 2.29
164 165 7.430502 GTCATGAAGAAAGCAATAGCAACATAC 59.569 37.037 0.00 0.00 45.49 2.39
165 166 7.337689 TCATGAAGAAAGCAATAGCAACATACT 59.662 33.333 0.00 0.00 45.49 2.12
166 167 8.615211 CATGAAGAAAGCAATAGCAACATACTA 58.385 33.333 0.00 0.00 45.49 1.82
167 168 8.560355 TGAAGAAAGCAATAGCAACATACTAA 57.440 30.769 0.00 0.00 45.49 2.24
168 169 9.008965 TGAAGAAAGCAATAGCAACATACTAAA 57.991 29.630 0.00 0.00 45.49 1.85
169 170 9.278734 GAAGAAAGCAATAGCAACATACTAAAC 57.721 33.333 0.00 0.00 45.49 2.01
170 171 7.464358 AGAAAGCAATAGCAACATACTAAACG 58.536 34.615 0.00 0.00 45.49 3.60
171 172 6.978343 AAGCAATAGCAACATACTAAACGA 57.022 33.333 0.00 0.00 45.49 3.85
172 173 7.553881 AAGCAATAGCAACATACTAAACGAT 57.446 32.000 0.00 0.00 45.49 3.73
173 174 7.178712 AGCAATAGCAACATACTAAACGATC 57.821 36.000 0.00 0.00 45.49 3.69
174 175 6.065153 GCAATAGCAACATACTAAACGATCG 58.935 40.000 14.88 14.88 41.58 3.69
175 176 6.581370 CAATAGCAACATACTAAACGATCGG 58.419 40.000 20.98 3.61 0.00 4.18
176 177 3.454375 AGCAACATACTAAACGATCGGG 58.546 45.455 20.98 8.89 0.00 5.14
177 178 3.118884 AGCAACATACTAAACGATCGGGT 60.119 43.478 20.98 14.05 0.00 5.28
178 179 3.000925 GCAACATACTAAACGATCGGGTG 59.999 47.826 20.98 8.68 0.00 4.61
179 180 2.817901 ACATACTAAACGATCGGGTGC 58.182 47.619 20.98 0.00 0.00 5.01
180 181 2.429610 ACATACTAAACGATCGGGTGCT 59.570 45.455 20.98 1.04 0.00 4.40
181 182 3.633525 ACATACTAAACGATCGGGTGCTA 59.366 43.478 20.98 3.41 0.00 3.49
182 183 4.098349 ACATACTAAACGATCGGGTGCTAA 59.902 41.667 20.98 0.00 0.00 3.09
183 184 3.160777 ACTAAACGATCGGGTGCTAAG 57.839 47.619 20.98 8.87 0.00 2.18
184 185 1.859080 CTAAACGATCGGGTGCTAAGC 59.141 52.381 20.98 0.00 0.00 3.09
185 186 0.249398 AAACGATCGGGTGCTAAGCT 59.751 50.000 20.98 0.00 0.00 3.74
186 187 1.108776 AACGATCGGGTGCTAAGCTA 58.891 50.000 20.98 0.00 0.00 3.32
187 188 1.108776 ACGATCGGGTGCTAAGCTAA 58.891 50.000 20.98 0.00 0.00 3.09
188 189 1.687123 ACGATCGGGTGCTAAGCTAAT 59.313 47.619 20.98 0.00 0.00 1.73
189 190 2.061773 CGATCGGGTGCTAAGCTAATG 58.938 52.381 7.38 0.00 0.00 1.90
190 191 2.417719 GATCGGGTGCTAAGCTAATGG 58.582 52.381 0.00 0.00 0.00 3.16
191 192 1.491668 TCGGGTGCTAAGCTAATGGA 58.508 50.000 0.00 0.00 0.00 3.41
192 193 1.834896 TCGGGTGCTAAGCTAATGGAA 59.165 47.619 0.00 0.00 0.00 3.53
193 194 2.438021 TCGGGTGCTAAGCTAATGGAAT 59.562 45.455 0.00 0.00 0.00 3.01
194 195 2.549754 CGGGTGCTAAGCTAATGGAATG 59.450 50.000 0.00 0.00 0.00 2.67
195 196 2.887152 GGGTGCTAAGCTAATGGAATGG 59.113 50.000 0.00 0.00 0.00 3.16
196 197 2.887152 GGTGCTAAGCTAATGGAATGGG 59.113 50.000 0.00 0.00 0.00 4.00
197 198 3.555966 GTGCTAAGCTAATGGAATGGGT 58.444 45.455 0.00 0.00 0.00 4.51
198 199 3.565902 GTGCTAAGCTAATGGAATGGGTC 59.434 47.826 0.00 0.00 0.00 4.46
199 200 3.201930 TGCTAAGCTAATGGAATGGGTCA 59.798 43.478 0.00 0.00 0.00 4.02
200 201 4.141181 TGCTAAGCTAATGGAATGGGTCAT 60.141 41.667 0.00 0.00 0.00 3.06
201 202 4.217118 GCTAAGCTAATGGAATGGGTCATG 59.783 45.833 0.00 0.00 0.00 3.07
202 203 3.959495 AGCTAATGGAATGGGTCATGT 57.041 42.857 0.00 0.00 0.00 3.21
203 204 3.825328 AGCTAATGGAATGGGTCATGTC 58.175 45.455 0.00 0.00 0.00 3.06
204 205 3.202818 AGCTAATGGAATGGGTCATGTCA 59.797 43.478 0.00 0.00 0.00 3.58
205 206 3.953612 GCTAATGGAATGGGTCATGTCAA 59.046 43.478 0.00 0.00 0.00 3.18
206 207 4.586001 GCTAATGGAATGGGTCATGTCAAT 59.414 41.667 0.00 0.00 0.00 2.57
207 208 5.278660 GCTAATGGAATGGGTCATGTCAATC 60.279 44.000 0.00 0.00 0.00 2.67
208 209 3.735720 TGGAATGGGTCATGTCAATCA 57.264 42.857 0.00 0.00 0.00 2.57
209 210 3.623703 TGGAATGGGTCATGTCAATCAG 58.376 45.455 0.00 0.00 0.00 2.90
210 211 3.266513 TGGAATGGGTCATGTCAATCAGA 59.733 43.478 0.00 0.00 0.00 3.27
211 212 4.079615 TGGAATGGGTCATGTCAATCAGAT 60.080 41.667 0.00 0.00 0.00 2.90
212 213 4.518211 GGAATGGGTCATGTCAATCAGATC 59.482 45.833 0.00 0.00 0.00 2.75
213 214 4.783560 ATGGGTCATGTCAATCAGATCA 57.216 40.909 0.00 0.00 0.00 2.92
214 215 4.783560 TGGGTCATGTCAATCAGATCAT 57.216 40.909 0.00 0.00 0.00 2.45
215 216 5.120054 TGGGTCATGTCAATCAGATCATT 57.880 39.130 0.00 0.00 0.00 2.57
216 217 5.128205 TGGGTCATGTCAATCAGATCATTC 58.872 41.667 0.00 0.00 0.00 2.67
217 218 5.104235 TGGGTCATGTCAATCAGATCATTCT 60.104 40.000 0.00 0.00 0.00 2.40
218 219 5.469421 GGGTCATGTCAATCAGATCATTCTC 59.531 44.000 0.00 0.00 0.00 2.87
219 220 6.289834 GGTCATGTCAATCAGATCATTCTCT 58.710 40.000 0.00 0.00 0.00 3.10
220 221 6.766944 GGTCATGTCAATCAGATCATTCTCTT 59.233 38.462 0.00 0.00 0.00 2.85
221 222 7.930325 GGTCATGTCAATCAGATCATTCTCTTA 59.070 37.037 0.00 0.00 0.00 2.10
222 223 9.322773 GTCATGTCAATCAGATCATTCTCTTAA 57.677 33.333 0.00 0.00 0.00 1.85
234 235 8.882282 AGATCATTCTCTTAATGATGTGATCCT 58.118 33.333 15.84 5.19 44.74 3.24
235 236 8.850007 ATCATTCTCTTAATGATGTGATCCTG 57.150 34.615 11.39 0.00 43.52 3.86
236 237 7.799081 TCATTCTCTTAATGATGTGATCCTGT 58.201 34.615 0.00 0.00 32.21 4.00
237 238 8.270030 TCATTCTCTTAATGATGTGATCCTGTT 58.730 33.333 0.00 0.00 32.21 3.16
238 239 9.551734 CATTCTCTTAATGATGTGATCCTGTTA 57.448 33.333 0.00 0.00 0.00 2.41
241 242 9.770097 TCTCTTAATGATGTGATCCTGTTAATC 57.230 33.333 0.00 0.00 0.00 1.75
242 243 9.551734 CTCTTAATGATGTGATCCTGTTAATCA 57.448 33.333 0.00 0.00 0.00 2.57
243 244 9.904198 TCTTAATGATGTGATCCTGTTAATCAA 57.096 29.630 0.00 0.00 35.04 2.57
249 250 9.460019 TGATGTGATCCTGTTAATCAAATAACA 57.540 29.630 0.00 0.58 42.02 2.41
252 253 9.295825 TGTGATCCTGTTAATCAAATAACAACT 57.704 29.630 2.04 0.00 43.21 3.16
253 254 9.774742 GTGATCCTGTTAATCAAATAACAACTC 57.225 33.333 2.04 1.00 43.21 3.01
254 255 9.513906 TGATCCTGTTAATCAAATAACAACTCA 57.486 29.630 2.04 3.03 43.21 3.41
271 272 6.573664 CAACTCATTGTTCATGGTTAGGAA 57.426 37.500 0.00 0.00 36.63 3.36
272 273 6.980593 CAACTCATTGTTCATGGTTAGGAAA 58.019 36.000 0.00 0.00 36.63 3.13
273 274 6.575162 ACTCATTGTTCATGGTTAGGAAAC 57.425 37.500 0.00 0.00 33.07 2.78
274 275 6.068010 ACTCATTGTTCATGGTTAGGAAACA 58.932 36.000 0.00 0.00 37.34 2.83
275 276 6.721208 ACTCATTGTTCATGGTTAGGAAACAT 59.279 34.615 0.00 0.00 37.34 2.71
276 277 7.888021 ACTCATTGTTCATGGTTAGGAAACATA 59.112 33.333 0.00 0.00 37.34 2.29
277 278 8.642935 TCATTGTTCATGGTTAGGAAACATAA 57.357 30.769 0.00 0.00 37.34 1.90
278 279 8.519526 TCATTGTTCATGGTTAGGAAACATAAC 58.480 33.333 0.00 0.00 37.34 1.89
293 294 8.458843 AGGAAACATAACCATCTTTGATTAACG 58.541 33.333 0.00 0.00 0.00 3.18
294 295 8.455682 GGAAACATAACCATCTTTGATTAACGA 58.544 33.333 0.00 0.00 0.00 3.85
295 296 9.490663 GAAACATAACCATCTTTGATTAACGAG 57.509 33.333 0.00 0.00 0.00 4.18
296 297 7.016361 ACATAACCATCTTTGATTAACGAGC 57.984 36.000 0.00 0.00 0.00 5.03
297 298 6.823689 ACATAACCATCTTTGATTAACGAGCT 59.176 34.615 0.00 0.00 0.00 4.09
298 299 7.985184 ACATAACCATCTTTGATTAACGAGCTA 59.015 33.333 0.00 0.00 0.00 3.32
299 300 6.910536 AACCATCTTTGATTAACGAGCTAG 57.089 37.500 0.00 0.00 0.00 3.42
300 301 5.978814 ACCATCTTTGATTAACGAGCTAGT 58.021 37.500 0.00 0.00 0.00 2.57
301 302 6.043411 ACCATCTTTGATTAACGAGCTAGTC 58.957 40.000 0.00 0.00 0.00 2.59
302 303 6.042777 CCATCTTTGATTAACGAGCTAGTCA 58.957 40.000 0.00 0.00 0.00 3.41
303 304 6.535150 CCATCTTTGATTAACGAGCTAGTCAA 59.465 38.462 0.00 0.00 0.00 3.18
304 305 7.254252 CCATCTTTGATTAACGAGCTAGTCAAG 60.254 40.741 0.00 0.00 31.56 3.02
305 306 6.688578 TCTTTGATTAACGAGCTAGTCAAGT 58.311 36.000 0.00 0.00 31.56 3.16
306 307 7.823665 TCTTTGATTAACGAGCTAGTCAAGTA 58.176 34.615 0.00 0.00 31.56 2.24
307 308 7.968956 TCTTTGATTAACGAGCTAGTCAAGTAG 59.031 37.037 0.00 0.00 31.56 2.57
308 309 6.997239 TGATTAACGAGCTAGTCAAGTAGA 57.003 37.500 0.00 0.00 0.00 2.59
309 310 7.017498 TGATTAACGAGCTAGTCAAGTAGAG 57.983 40.000 0.00 0.00 0.00 2.43
310 311 5.814764 TTAACGAGCTAGTCAAGTAGAGG 57.185 43.478 0.00 0.00 0.00 3.69
311 312 2.018515 ACGAGCTAGTCAAGTAGAGGC 58.981 52.381 0.00 0.00 0.00 4.70
312 313 2.017782 CGAGCTAGTCAAGTAGAGGCA 58.982 52.381 0.00 0.00 0.00 4.75
313 314 2.621055 CGAGCTAGTCAAGTAGAGGCAT 59.379 50.000 0.00 0.00 0.00 4.40
314 315 3.815962 CGAGCTAGTCAAGTAGAGGCATA 59.184 47.826 0.00 0.00 0.00 3.14
315 316 4.319911 CGAGCTAGTCAAGTAGAGGCATAC 60.320 50.000 0.00 0.00 0.00 2.39
316 317 4.798882 AGCTAGTCAAGTAGAGGCATACT 58.201 43.478 0.00 0.00 37.61 2.12
317 318 5.942961 AGCTAGTCAAGTAGAGGCATACTA 58.057 41.667 3.23 0.00 34.90 1.82
318 319 6.001460 AGCTAGTCAAGTAGAGGCATACTAG 58.999 44.000 0.00 0.00 38.50 2.57
319 320 5.766174 GCTAGTCAAGTAGAGGCATACTAGT 59.234 44.000 0.00 0.00 38.02 2.57
320 321 6.293735 GCTAGTCAAGTAGAGGCATACTAGTG 60.294 46.154 5.39 0.00 38.02 2.74
321 322 5.756918 AGTCAAGTAGAGGCATACTAGTGA 58.243 41.667 5.39 2.59 34.90 3.41
322 323 5.591067 AGTCAAGTAGAGGCATACTAGTGAC 59.409 44.000 17.97 17.97 40.57 3.67
323 324 5.357314 GTCAAGTAGAGGCATACTAGTGACA 59.643 44.000 19.41 0.00 40.28 3.58
324 325 5.357314 TCAAGTAGAGGCATACTAGTGACAC 59.643 44.000 5.39 0.00 34.90 3.67
325 326 5.118729 AGTAGAGGCATACTAGTGACACT 57.881 43.478 13.68 13.68 34.21 3.55
326 327 5.511363 AGTAGAGGCATACTAGTGACACTT 58.489 41.667 14.50 0.00 34.21 3.16
327 328 5.952947 AGTAGAGGCATACTAGTGACACTTT 59.047 40.000 14.50 4.04 34.21 2.66
328 329 5.078411 AGAGGCATACTAGTGACACTTTG 57.922 43.478 14.50 9.81 0.00 2.77
329 330 4.528596 AGAGGCATACTAGTGACACTTTGT 59.471 41.667 14.50 14.92 0.00 2.83
330 331 5.012148 AGAGGCATACTAGTGACACTTTGTT 59.988 40.000 14.50 0.00 0.00 2.83
331 332 5.621193 AGGCATACTAGTGACACTTTGTTT 58.379 37.500 14.50 6.06 0.00 2.83
332 333 5.470098 AGGCATACTAGTGACACTTTGTTTG 59.530 40.000 14.50 17.08 0.00 2.93
333 334 5.238650 GGCATACTAGTGACACTTTGTTTGT 59.761 40.000 14.50 6.39 0.00 2.83
334 335 6.363473 GCATACTAGTGACACTTTGTTTGTC 58.637 40.000 14.50 10.38 43.22 3.18
335 336 6.202954 GCATACTAGTGACACTTTGTTTGTCT 59.797 38.462 14.50 0.00 43.30 3.41
336 337 7.384115 GCATACTAGTGACACTTTGTTTGTCTA 59.616 37.037 14.50 0.00 43.30 2.59
337 338 9.424319 CATACTAGTGACACTTTGTTTGTCTAT 57.576 33.333 14.50 0.80 43.30 1.98
338 339 7.715265 ACTAGTGACACTTTGTTTGTCTATG 57.285 36.000 14.50 0.00 43.30 2.23
339 340 7.272978 ACTAGTGACACTTTGTTTGTCTATGT 58.727 34.615 14.50 0.00 43.30 2.29
340 341 8.418662 ACTAGTGACACTTTGTTTGTCTATGTA 58.581 33.333 14.50 0.00 43.30 2.29
341 342 9.424319 CTAGTGACACTTTGTTTGTCTATGTAT 57.576 33.333 14.50 0.00 43.30 2.29
342 343 8.677148 AGTGACACTTTGTTTGTCTATGTATT 57.323 30.769 1.07 0.00 43.30 1.89
343 344 8.774586 AGTGACACTTTGTTTGTCTATGTATTC 58.225 33.333 1.07 0.00 43.30 1.75
344 345 8.556194 GTGACACTTTGTTTGTCTATGTATTCA 58.444 33.333 0.00 0.00 43.30 2.57
345 346 8.556194 TGACACTTTGTTTGTCTATGTATTCAC 58.444 33.333 4.27 0.00 43.30 3.18
346 347 8.445275 ACACTTTGTTTGTCTATGTATTCACA 57.555 30.769 0.00 0.00 39.52 3.58
347 348 8.342634 ACACTTTGTTTGTCTATGTATTCACAC 58.657 33.333 0.00 0.00 37.54 3.82
348 349 8.341903 CACTTTGTTTGTCTATGTATTCACACA 58.658 33.333 0.00 0.00 37.54 3.72
349 350 9.066892 ACTTTGTTTGTCTATGTATTCACACAT 57.933 29.630 0.00 0.00 41.88 3.21
350 351 9.333497 CTTTGTTTGTCTATGTATTCACACATG 57.667 33.333 0.00 0.00 39.46 3.21
351 352 7.977789 TGTTTGTCTATGTATTCACACATGT 57.022 32.000 0.00 0.00 39.46 3.21
352 353 9.495572 TTGTTTGTCTATGTATTCACACATGTA 57.504 29.630 0.00 0.00 39.46 2.29
353 354 9.665719 TGTTTGTCTATGTATTCACACATGTAT 57.334 29.630 0.00 0.00 39.46 2.29
363 364 8.608317 TGTATTCACACATGTATTATGTTTCCG 58.392 33.333 0.00 0.00 0.00 4.30
364 365 6.429791 TTCACACATGTATTATGTTTCCGG 57.570 37.500 0.00 0.00 0.00 5.14
365 366 5.492895 TCACACATGTATTATGTTTCCGGT 58.507 37.500 0.00 0.00 0.00 5.28
366 367 5.941058 TCACACATGTATTATGTTTCCGGTT 59.059 36.000 0.00 0.00 0.00 4.44
367 368 7.104290 TCACACATGTATTATGTTTCCGGTTA 58.896 34.615 0.00 0.00 0.00 2.85
368 369 7.606839 TCACACATGTATTATGTTTCCGGTTAA 59.393 33.333 0.00 0.00 0.00 2.01
369 370 8.402472 CACACATGTATTATGTTTCCGGTTAAT 58.598 33.333 0.00 1.95 0.00 1.40
370 371 9.616156 ACACATGTATTATGTTTCCGGTTAATA 57.384 29.630 0.00 0.00 0.00 0.98
371 372 9.872757 CACATGTATTATGTTTCCGGTTAATAC 57.127 33.333 0.00 12.47 37.73 1.89
372 373 9.616156 ACATGTATTATGTTTCCGGTTAATACA 57.384 29.630 22.83 22.83 44.85 2.29
380 381 7.311364 TGTTTCCGGTTAATACAATTCTAGC 57.689 36.000 0.00 0.00 0.00 3.42
381 382 6.879993 TGTTTCCGGTTAATACAATTCTAGCA 59.120 34.615 0.00 0.00 0.00 3.49
382 383 7.554835 TGTTTCCGGTTAATACAATTCTAGCAT 59.445 33.333 0.00 0.00 0.00 3.79
383 384 7.490962 TTCCGGTTAATACAATTCTAGCATG 57.509 36.000 0.00 0.00 0.00 4.06
384 385 6.822442 TCCGGTTAATACAATTCTAGCATGA 58.178 36.000 0.00 0.00 0.00 3.07
385 386 7.276658 TCCGGTTAATACAATTCTAGCATGAA 58.723 34.615 0.00 0.00 0.00 2.57
386 387 7.936847 TCCGGTTAATACAATTCTAGCATGAAT 59.063 33.333 0.00 0.00 38.19 2.57
387 388 9.214957 CCGGTTAATACAATTCTAGCATGAATA 57.785 33.333 0.00 0.00 35.82 1.75
446 447 8.637196 AATAACTTTATTATTGCCTCTAGGGC 57.363 34.615 13.60 13.60 44.71 5.19
597 598 3.430236 GGGCTTTTAGTTGCACACTGTTT 60.430 43.478 10.59 0.00 35.97 2.83
660 661 5.444122 CCTTCGAGCTAACTTGTCTTTTTG 58.556 41.667 0.00 0.00 0.00 2.44
1153 1159 6.999950 TCTGTTAGTTGGCAGATACTTGTTA 58.000 36.000 0.00 0.00 36.89 2.41
1391 1397 2.109126 GCTGATGAACACCGCCTCC 61.109 63.158 0.00 0.00 0.00 4.30
1475 1481 6.832384 AGCACTTCCAGATTATTGACATTGAT 59.168 34.615 0.00 0.00 0.00 2.57
1530 1536 6.845758 AGCATTTCATTCCTTCTCAATCAA 57.154 33.333 0.00 0.00 0.00 2.57
1759 1770 4.569943 CAGTTGCACAGTAGGACATAAGT 58.430 43.478 0.00 0.00 0.00 2.24
1866 1879 0.953471 TTCGCACTGCTTAACGCCAT 60.953 50.000 0.00 0.00 38.05 4.40
2126 2155 8.981647 GTTTGCAACTCAATATCATCACTTTTT 58.018 29.630 0.00 0.00 34.12 1.94
2836 2876 0.523072 CGCAACTAGGCAGCATGTTT 59.477 50.000 0.00 0.00 39.31 2.83
2933 2974 1.921869 AACCTGGGTTATGAGCCCCG 61.922 60.000 2.85 0.00 45.49 5.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.139397 TCTCCAAAGGTACATGTTGGGTT 59.861 43.478 2.30 0.00 41.82 4.11
1 2 2.714250 TCTCCAAAGGTACATGTTGGGT 59.286 45.455 2.30 0.00 41.82 4.51
2 3 3.081804 GTCTCCAAAGGTACATGTTGGG 58.918 50.000 2.30 0.00 41.82 4.12
3 4 3.502211 GTGTCTCCAAAGGTACATGTTGG 59.498 47.826 2.30 5.28 42.70 3.77
4 5 3.502211 GGTGTCTCCAAAGGTACATGTTG 59.498 47.826 2.30 0.00 35.97 3.33
5 6 3.394606 AGGTGTCTCCAAAGGTACATGTT 59.605 43.478 2.30 0.00 39.02 2.71
6 7 2.979678 AGGTGTCTCCAAAGGTACATGT 59.020 45.455 2.69 2.69 39.02 3.21
7 8 3.244561 ACAGGTGTCTCCAAAGGTACATG 60.245 47.826 0.00 0.00 39.02 3.21
8 9 2.979678 ACAGGTGTCTCCAAAGGTACAT 59.020 45.455 0.00 0.00 39.02 2.29
9 10 2.404559 ACAGGTGTCTCCAAAGGTACA 58.595 47.619 0.00 0.00 39.02 2.90
10 11 4.612264 TTACAGGTGTCTCCAAAGGTAC 57.388 45.455 0.00 0.00 39.02 3.34
11 12 4.564821 GCATTACAGGTGTCTCCAAAGGTA 60.565 45.833 0.00 0.00 39.02 3.08
12 13 3.810743 GCATTACAGGTGTCTCCAAAGGT 60.811 47.826 0.00 0.00 39.02 3.50
13 14 2.749621 GCATTACAGGTGTCTCCAAAGG 59.250 50.000 0.00 0.00 39.02 3.11
14 15 3.679389 AGCATTACAGGTGTCTCCAAAG 58.321 45.455 0.00 0.00 39.02 2.77
15 16 3.559171 GGAGCATTACAGGTGTCTCCAAA 60.559 47.826 9.61 0.00 38.56 3.28
16 17 2.027192 GGAGCATTACAGGTGTCTCCAA 60.027 50.000 9.61 0.00 38.56 3.53
17 18 1.555075 GGAGCATTACAGGTGTCTCCA 59.445 52.381 9.61 0.00 38.56 3.86
18 19 1.834263 AGGAGCATTACAGGTGTCTCC 59.166 52.381 7.27 7.27 38.77 3.71
19 20 3.618690 AAGGAGCATTACAGGTGTCTC 57.381 47.619 0.00 0.00 0.00 3.36
20 21 5.700402 ATAAAGGAGCATTACAGGTGTCT 57.300 39.130 0.00 0.00 0.00 3.41
21 22 7.715249 TGATTATAAAGGAGCATTACAGGTGTC 59.285 37.037 0.00 0.00 0.00 3.67
22 23 7.499232 GTGATTATAAAGGAGCATTACAGGTGT 59.501 37.037 0.00 0.00 0.00 4.16
23 24 7.041098 GGTGATTATAAAGGAGCATTACAGGTG 60.041 40.741 0.00 0.00 0.00 4.00
24 25 6.998673 GGTGATTATAAAGGAGCATTACAGGT 59.001 38.462 0.00 0.00 0.00 4.00
25 26 6.431234 GGGTGATTATAAAGGAGCATTACAGG 59.569 42.308 0.00 0.00 0.00 4.00
26 27 6.998074 TGGGTGATTATAAAGGAGCATTACAG 59.002 38.462 0.00 0.00 0.00 2.74
27 28 6.905736 TGGGTGATTATAAAGGAGCATTACA 58.094 36.000 0.00 0.00 0.00 2.41
28 29 6.998673 ACTGGGTGATTATAAAGGAGCATTAC 59.001 38.462 0.00 0.00 0.00 1.89
29 30 7.149202 ACTGGGTGATTATAAAGGAGCATTA 57.851 36.000 0.00 0.00 0.00 1.90
30 31 6.018433 ACTGGGTGATTATAAAGGAGCATT 57.982 37.500 0.00 0.00 0.00 3.56
31 32 5.653255 ACTGGGTGATTATAAAGGAGCAT 57.347 39.130 0.00 0.00 0.00 3.79
32 33 5.450818 AACTGGGTGATTATAAAGGAGCA 57.549 39.130 0.00 0.00 0.00 4.26
33 34 5.465724 CGTAACTGGGTGATTATAAAGGAGC 59.534 44.000 0.00 0.00 0.00 4.70
34 35 6.579865 ACGTAACTGGGTGATTATAAAGGAG 58.420 40.000 0.00 0.00 0.00 3.69
35 36 6.549433 ACGTAACTGGGTGATTATAAAGGA 57.451 37.500 0.00 0.00 0.00 3.36
36 37 6.596497 ACAACGTAACTGGGTGATTATAAAGG 59.404 38.462 0.00 0.00 0.00 3.11
37 38 7.332430 TCACAACGTAACTGGGTGATTATAAAG 59.668 37.037 0.00 0.00 33.88 1.85
38 39 7.118101 GTCACAACGTAACTGGGTGATTATAAA 59.882 37.037 0.00 0.00 40.23 1.40
39 40 6.591062 GTCACAACGTAACTGGGTGATTATAA 59.409 38.462 0.00 0.00 40.23 0.98
40 41 6.101332 GTCACAACGTAACTGGGTGATTATA 58.899 40.000 0.00 0.00 40.23 0.98
41 42 4.933400 GTCACAACGTAACTGGGTGATTAT 59.067 41.667 0.00 0.00 40.23 1.28
42 43 4.309099 GTCACAACGTAACTGGGTGATTA 58.691 43.478 0.00 0.00 40.23 1.75
43 44 3.135994 GTCACAACGTAACTGGGTGATT 58.864 45.455 0.00 0.00 40.23 2.57
44 45 2.762745 GTCACAACGTAACTGGGTGAT 58.237 47.619 0.00 0.00 40.23 3.06
45 46 1.536496 CGTCACAACGTAACTGGGTGA 60.536 52.381 0.00 0.00 43.94 4.02
46 47 0.856641 CGTCACAACGTAACTGGGTG 59.143 55.000 0.00 0.00 43.94 4.61
47 48 3.277652 CGTCACAACGTAACTGGGT 57.722 52.632 0.00 0.00 43.94 4.51
56 57 2.472488 GGTACTACCAAACGTCACAACG 59.528 50.000 0.00 0.00 45.77 4.10
57 58 2.802247 GGGTACTACCAAACGTCACAAC 59.198 50.000 7.57 0.00 41.02 3.32
58 59 2.433604 TGGGTACTACCAAACGTCACAA 59.566 45.455 7.57 0.00 41.02 3.33
59 60 2.037901 TGGGTACTACCAAACGTCACA 58.962 47.619 7.57 0.00 41.02 3.58
60 61 2.818130 TGGGTACTACCAAACGTCAC 57.182 50.000 7.57 0.00 41.02 3.67
65 66 7.295398 GAGGATCACTTTGGGTACTACCAAAC 61.295 46.154 11.10 3.51 44.42 2.93
66 67 5.280317 GAGGATCACTTTGGGTACTACCAAA 60.280 44.000 13.62 13.62 45.82 3.28
67 68 4.224370 GAGGATCACTTTGGGTACTACCAA 59.776 45.833 7.57 0.00 41.41 3.67
68 69 3.773119 GAGGATCACTTTGGGTACTACCA 59.227 47.826 7.57 0.00 35.61 3.25
69 70 3.134262 GGAGGATCACTTTGGGTACTACC 59.866 52.174 0.00 0.00 36.25 3.18
70 71 3.181478 CGGAGGATCACTTTGGGTACTAC 60.181 52.174 0.00 0.00 36.25 2.73
71 72 3.028850 CGGAGGATCACTTTGGGTACTA 58.971 50.000 0.00 0.00 36.25 1.82
72 73 1.831736 CGGAGGATCACTTTGGGTACT 59.168 52.381 0.00 0.00 36.25 2.73
73 74 1.829222 TCGGAGGATCACTTTGGGTAC 59.171 52.381 0.00 0.00 36.25 3.34
74 75 2.241281 TCGGAGGATCACTTTGGGTA 57.759 50.000 0.00 0.00 36.25 3.69
75 76 1.584724 ATCGGAGGATCACTTTGGGT 58.415 50.000 0.00 0.00 36.25 4.51
76 77 3.838244 TTATCGGAGGATCACTTTGGG 57.162 47.619 0.00 0.00 36.25 4.12
77 78 3.555956 CGTTTATCGGAGGATCACTTTGG 59.444 47.826 0.00 0.00 36.25 3.28
78 79 4.778842 CGTTTATCGGAGGATCACTTTG 57.221 45.455 0.00 0.00 36.25 2.77
91 92 4.750098 AGATTATGCAACTCCCGTTTATCG 59.250 41.667 0.00 0.00 39.52 2.92
92 93 5.758296 TGAGATTATGCAACTCCCGTTTATC 59.242 40.000 0.00 0.00 0.00 1.75
93 94 5.680619 TGAGATTATGCAACTCCCGTTTAT 58.319 37.500 0.00 0.00 0.00 1.40
94 95 5.092554 TGAGATTATGCAACTCCCGTTTA 57.907 39.130 0.00 0.00 0.00 2.01
95 96 3.950397 TGAGATTATGCAACTCCCGTTT 58.050 40.909 0.00 0.00 0.00 3.60
96 97 3.627395 TGAGATTATGCAACTCCCGTT 57.373 42.857 0.00 0.00 0.00 4.44
97 98 3.845781 ATGAGATTATGCAACTCCCGT 57.154 42.857 0.00 0.00 0.00 5.28
98 99 4.887748 ACTATGAGATTATGCAACTCCCG 58.112 43.478 0.00 0.00 0.00 5.14
99 100 9.593134 CTATAACTATGAGATTATGCAACTCCC 57.407 37.037 0.00 0.00 0.00 4.30
100 101 9.593134 CCTATAACTATGAGATTATGCAACTCC 57.407 37.037 0.00 0.00 0.00 3.85
124 125 9.388506 CTTTCTTCATGACTTATACATGTTCCT 57.611 33.333 2.30 0.00 43.56 3.36
125 126 8.125448 GCTTTCTTCATGACTTATACATGTTCC 58.875 37.037 2.30 0.00 43.56 3.62
126 127 8.668353 TGCTTTCTTCATGACTTATACATGTTC 58.332 33.333 2.30 0.00 43.56 3.18
127 128 8.565896 TGCTTTCTTCATGACTTATACATGTT 57.434 30.769 2.30 0.00 43.56 2.71
128 129 8.565896 TTGCTTTCTTCATGACTTATACATGT 57.434 30.769 2.69 2.69 43.56 3.21
131 132 8.830580 GCTATTGCTTTCTTCATGACTTATACA 58.169 33.333 0.00 0.00 36.03 2.29
132 133 8.830580 TGCTATTGCTTTCTTCATGACTTATAC 58.169 33.333 0.00 0.00 40.48 1.47
133 134 8.962884 TGCTATTGCTTTCTTCATGACTTATA 57.037 30.769 0.00 0.00 40.48 0.98
134 135 7.870509 TGCTATTGCTTTCTTCATGACTTAT 57.129 32.000 0.00 0.00 40.48 1.73
135 136 7.174772 TGTTGCTATTGCTTTCTTCATGACTTA 59.825 33.333 0.00 0.00 40.48 2.24
136 137 6.016024 TGTTGCTATTGCTTTCTTCATGACTT 60.016 34.615 0.00 0.00 40.48 3.01
137 138 5.474532 TGTTGCTATTGCTTTCTTCATGACT 59.525 36.000 0.00 0.00 40.48 3.41
138 139 5.702865 TGTTGCTATTGCTTTCTTCATGAC 58.297 37.500 0.00 0.00 40.48 3.06
139 140 5.963176 TGTTGCTATTGCTTTCTTCATGA 57.037 34.783 0.00 0.00 40.48 3.07
140 141 7.478322 AGTATGTTGCTATTGCTTTCTTCATG 58.522 34.615 0.00 0.00 40.48 3.07
141 142 7.636150 AGTATGTTGCTATTGCTTTCTTCAT 57.364 32.000 0.00 0.17 40.48 2.57
142 143 8.560355 TTAGTATGTTGCTATTGCTTTCTTCA 57.440 30.769 0.00 0.00 40.48 3.02
143 144 9.278734 GTTTAGTATGTTGCTATTGCTTTCTTC 57.721 33.333 0.00 0.00 40.48 2.87
144 145 7.962918 CGTTTAGTATGTTGCTATTGCTTTCTT 59.037 33.333 0.00 0.00 40.48 2.52
145 146 7.333423 TCGTTTAGTATGTTGCTATTGCTTTCT 59.667 33.333 0.00 0.00 40.48 2.52
146 147 7.461107 TCGTTTAGTATGTTGCTATTGCTTTC 58.539 34.615 0.00 0.00 40.48 2.62
147 148 7.372451 TCGTTTAGTATGTTGCTATTGCTTT 57.628 32.000 0.00 0.00 40.48 3.51
148 149 6.978343 TCGTTTAGTATGTTGCTATTGCTT 57.022 33.333 0.00 0.00 40.48 3.91
149 150 6.074302 CGATCGTTTAGTATGTTGCTATTGCT 60.074 38.462 7.03 0.00 40.48 3.91
150 151 6.065153 CGATCGTTTAGTATGTTGCTATTGC 58.935 40.000 7.03 0.00 40.20 3.56
151 152 6.346598 CCCGATCGTTTAGTATGTTGCTATTG 60.347 42.308 15.09 0.00 0.00 1.90
152 153 5.694910 CCCGATCGTTTAGTATGTTGCTATT 59.305 40.000 15.09 0.00 0.00 1.73
153 154 5.221382 ACCCGATCGTTTAGTATGTTGCTAT 60.221 40.000 15.09 0.00 0.00 2.97
154 155 4.098349 ACCCGATCGTTTAGTATGTTGCTA 59.902 41.667 15.09 0.00 0.00 3.49
155 156 3.118884 ACCCGATCGTTTAGTATGTTGCT 60.119 43.478 15.09 0.00 0.00 3.91
156 157 3.000925 CACCCGATCGTTTAGTATGTTGC 59.999 47.826 15.09 0.00 0.00 4.17
157 158 3.000925 GCACCCGATCGTTTAGTATGTTG 59.999 47.826 15.09 0.00 0.00 3.33
158 159 3.118884 AGCACCCGATCGTTTAGTATGTT 60.119 43.478 15.09 0.00 0.00 2.71
159 160 2.429610 AGCACCCGATCGTTTAGTATGT 59.570 45.455 15.09 0.00 0.00 2.29
160 161 3.093717 AGCACCCGATCGTTTAGTATG 57.906 47.619 15.09 2.63 0.00 2.39
161 162 4.795308 GCTTAGCACCCGATCGTTTAGTAT 60.795 45.833 15.09 1.60 0.00 2.12
162 163 3.489738 GCTTAGCACCCGATCGTTTAGTA 60.490 47.826 15.09 0.00 0.00 1.82
163 164 2.737679 GCTTAGCACCCGATCGTTTAGT 60.738 50.000 15.09 2.94 0.00 2.24
164 165 1.859080 GCTTAGCACCCGATCGTTTAG 59.141 52.381 15.09 2.28 0.00 1.85
165 166 1.479323 AGCTTAGCACCCGATCGTTTA 59.521 47.619 15.09 0.00 0.00 2.01
166 167 0.249398 AGCTTAGCACCCGATCGTTT 59.751 50.000 15.09 0.00 0.00 3.60
167 168 1.108776 TAGCTTAGCACCCGATCGTT 58.891 50.000 15.09 0.00 0.00 3.85
168 169 1.108776 TTAGCTTAGCACCCGATCGT 58.891 50.000 15.09 0.00 0.00 3.73
169 170 2.061773 CATTAGCTTAGCACCCGATCG 58.938 52.381 8.51 8.51 0.00 3.69
170 171 2.037251 TCCATTAGCTTAGCACCCGATC 59.963 50.000 7.07 0.00 0.00 3.69
171 172 2.047061 TCCATTAGCTTAGCACCCGAT 58.953 47.619 7.07 0.00 0.00 4.18
172 173 1.491668 TCCATTAGCTTAGCACCCGA 58.508 50.000 7.07 0.00 0.00 5.14
173 174 2.325583 TTCCATTAGCTTAGCACCCG 57.674 50.000 7.07 0.00 0.00 5.28
174 175 2.887152 CCATTCCATTAGCTTAGCACCC 59.113 50.000 7.07 0.00 0.00 4.61
175 176 2.887152 CCCATTCCATTAGCTTAGCACC 59.113 50.000 7.07 0.00 0.00 5.01
176 177 3.555966 ACCCATTCCATTAGCTTAGCAC 58.444 45.455 7.07 0.00 0.00 4.40
177 178 3.201930 TGACCCATTCCATTAGCTTAGCA 59.798 43.478 7.07 0.00 0.00 3.49
178 179 3.820557 TGACCCATTCCATTAGCTTAGC 58.179 45.455 0.00 0.00 0.00 3.09
179 180 5.380043 ACATGACCCATTCCATTAGCTTAG 58.620 41.667 0.00 0.00 0.00 2.18
180 181 5.104151 TGACATGACCCATTCCATTAGCTTA 60.104 40.000 0.00 0.00 0.00 3.09
181 182 4.210331 GACATGACCCATTCCATTAGCTT 58.790 43.478 0.00 0.00 0.00 3.74
182 183 3.202818 TGACATGACCCATTCCATTAGCT 59.797 43.478 0.00 0.00 0.00 3.32
183 184 3.554934 TGACATGACCCATTCCATTAGC 58.445 45.455 0.00 0.00 0.00 3.09
184 185 5.829391 TGATTGACATGACCCATTCCATTAG 59.171 40.000 0.00 0.00 0.00 1.73
185 186 5.764432 TGATTGACATGACCCATTCCATTA 58.236 37.500 0.00 0.00 0.00 1.90
186 187 4.612401 TGATTGACATGACCCATTCCATT 58.388 39.130 0.00 0.00 0.00 3.16
187 188 4.079615 TCTGATTGACATGACCCATTCCAT 60.080 41.667 0.00 0.00 0.00 3.41
188 189 3.266513 TCTGATTGACATGACCCATTCCA 59.733 43.478 0.00 0.00 0.00 3.53
189 190 3.889815 TCTGATTGACATGACCCATTCC 58.110 45.455 0.00 0.00 0.00 3.01
190 191 5.128205 TGATCTGATTGACATGACCCATTC 58.872 41.667 0.00 1.66 0.00 2.67
191 192 5.120054 TGATCTGATTGACATGACCCATT 57.880 39.130 0.00 0.00 0.00 3.16
192 193 4.783560 TGATCTGATTGACATGACCCAT 57.216 40.909 0.00 0.00 0.00 4.00
193 194 4.783560 ATGATCTGATTGACATGACCCA 57.216 40.909 0.00 0.00 0.00 4.51
194 195 5.374921 AGAATGATCTGATTGACATGACCC 58.625 41.667 0.00 0.00 33.59 4.46
195 196 6.289834 AGAGAATGATCTGATTGACATGACC 58.710 40.000 0.00 0.00 35.54 4.02
196 197 7.789273 AAGAGAATGATCTGATTGACATGAC 57.211 36.000 0.00 0.00 35.54 3.06
206 207 9.708092 GATCACATCATTAAGAGAATGATCTGA 57.292 33.333 15.81 15.81 43.38 3.27
207 208 8.937884 GGATCACATCATTAAGAGAATGATCTG 58.062 37.037 21.81 8.83 43.38 2.90
208 209 8.882282 AGGATCACATCATTAAGAGAATGATCT 58.118 33.333 21.81 13.67 43.38 2.75
209 210 8.937884 CAGGATCACATCATTAAGAGAATGATC 58.062 37.037 18.45 18.45 43.38 2.92
210 211 8.438373 ACAGGATCACATCATTAAGAGAATGAT 58.562 33.333 6.90 6.90 45.40 2.45
211 212 7.799081 ACAGGATCACATCATTAAGAGAATGA 58.201 34.615 2.66 2.66 40.50 2.57
212 213 8.447924 AACAGGATCACATCATTAAGAGAATG 57.552 34.615 0.00 0.00 0.00 2.67
215 216 9.770097 GATTAACAGGATCACATCATTAAGAGA 57.230 33.333 0.00 0.00 0.00 3.10
216 217 9.551734 TGATTAACAGGATCACATCATTAAGAG 57.448 33.333 0.00 0.00 0.00 2.85
217 218 9.904198 TTGATTAACAGGATCACATCATTAAGA 57.096 29.630 0.00 0.00 33.51 2.10
223 224 9.460019 TGTTATTTGATTAACAGGATCACATCA 57.540 29.630 0.00 0.00 37.20 3.07
226 227 9.295825 AGTTGTTATTTGATTAACAGGATCACA 57.704 29.630 0.00 0.00 41.65 3.58
227 228 9.774742 GAGTTGTTATTTGATTAACAGGATCAC 57.225 33.333 0.00 0.00 41.65 3.06
228 229 9.513906 TGAGTTGTTATTTGATTAACAGGATCA 57.486 29.630 0.00 0.00 41.65 2.92
232 233 9.912634 ACAATGAGTTGTTATTTGATTAACAGG 57.087 29.630 0.00 0.00 46.07 4.00
248 249 6.573664 TTCCTAACCATGAACAATGAGTTG 57.426 37.500 0.00 0.00 41.51 3.16
249 250 6.549364 TGTTTCCTAACCATGAACAATGAGTT 59.451 34.615 0.00 0.00 36.96 3.01
250 251 6.068010 TGTTTCCTAACCATGAACAATGAGT 58.932 36.000 0.00 0.00 36.21 3.41
251 252 6.573664 TGTTTCCTAACCATGAACAATGAG 57.426 37.500 0.00 0.00 36.21 2.90
252 253 8.519526 GTTATGTTTCCTAACCATGAACAATGA 58.480 33.333 0.00 0.00 36.21 2.57
253 254 7.759433 GGTTATGTTTCCTAACCATGAACAATG 59.241 37.037 7.24 0.00 44.95 2.82
254 255 7.836842 GGTTATGTTTCCTAACCATGAACAAT 58.163 34.615 7.24 0.00 44.95 2.71
255 256 7.222000 GGTTATGTTTCCTAACCATGAACAA 57.778 36.000 7.24 0.00 44.95 2.83
256 257 6.827586 GGTTATGTTTCCTAACCATGAACA 57.172 37.500 7.24 0.00 44.95 3.18
263 264 7.696992 TCAAAGATGGTTATGTTTCCTAACC 57.303 36.000 5.49 5.49 45.53 2.85
267 268 8.458843 CGTTAATCAAAGATGGTTATGTTTCCT 58.541 33.333 0.00 0.00 32.32 3.36
268 269 8.455682 TCGTTAATCAAAGATGGTTATGTTTCC 58.544 33.333 0.00 0.00 32.32 3.13
269 270 9.490663 CTCGTTAATCAAAGATGGTTATGTTTC 57.509 33.333 0.00 0.00 32.32 2.78
270 271 7.968405 GCTCGTTAATCAAAGATGGTTATGTTT 59.032 33.333 0.00 0.00 32.32 2.83
271 272 7.336931 AGCTCGTTAATCAAAGATGGTTATGTT 59.663 33.333 0.00 0.00 32.32 2.71
272 273 6.823689 AGCTCGTTAATCAAAGATGGTTATGT 59.176 34.615 0.00 0.00 32.32 2.29
273 274 7.251704 AGCTCGTTAATCAAAGATGGTTATG 57.748 36.000 0.00 0.00 32.32 1.90
274 275 8.204836 ACTAGCTCGTTAATCAAAGATGGTTAT 58.795 33.333 0.00 0.00 32.32 1.89
275 276 7.553334 ACTAGCTCGTTAATCAAAGATGGTTA 58.447 34.615 0.00 0.00 30.84 2.85
276 277 6.407202 ACTAGCTCGTTAATCAAAGATGGTT 58.593 36.000 0.00 0.00 33.49 3.67
277 278 5.978814 ACTAGCTCGTTAATCAAAGATGGT 58.021 37.500 0.00 0.00 0.00 3.55
278 279 6.042777 TGACTAGCTCGTTAATCAAAGATGG 58.957 40.000 0.00 0.00 0.00 3.51
279 280 7.276658 ACTTGACTAGCTCGTTAATCAAAGATG 59.723 37.037 0.00 0.00 0.00 2.90
280 281 7.324178 ACTTGACTAGCTCGTTAATCAAAGAT 58.676 34.615 0.00 0.00 0.00 2.40
281 282 6.688578 ACTTGACTAGCTCGTTAATCAAAGA 58.311 36.000 0.00 0.00 0.00 2.52
282 283 6.952935 ACTTGACTAGCTCGTTAATCAAAG 57.047 37.500 0.00 0.00 0.00 2.77
283 284 7.823665 TCTACTTGACTAGCTCGTTAATCAAA 58.176 34.615 0.00 0.00 0.00 2.69
284 285 7.387119 TCTACTTGACTAGCTCGTTAATCAA 57.613 36.000 0.00 0.00 0.00 2.57
285 286 6.038382 CCTCTACTTGACTAGCTCGTTAATCA 59.962 42.308 0.00 0.00 0.00 2.57
286 287 6.432107 CCTCTACTTGACTAGCTCGTTAATC 58.568 44.000 0.00 0.00 0.00 1.75
287 288 5.221087 GCCTCTACTTGACTAGCTCGTTAAT 60.221 44.000 0.00 0.00 0.00 1.40
288 289 4.096081 GCCTCTACTTGACTAGCTCGTTAA 59.904 45.833 0.00 0.00 0.00 2.01
289 290 3.626670 GCCTCTACTTGACTAGCTCGTTA 59.373 47.826 0.00 0.00 0.00 3.18
290 291 2.424246 GCCTCTACTTGACTAGCTCGTT 59.576 50.000 0.00 0.00 0.00 3.85
291 292 2.018515 GCCTCTACTTGACTAGCTCGT 58.981 52.381 0.00 0.00 0.00 4.18
292 293 2.017782 TGCCTCTACTTGACTAGCTCG 58.982 52.381 0.00 0.00 0.00 5.03
293 294 4.825085 AGTATGCCTCTACTTGACTAGCTC 59.175 45.833 0.00 0.00 0.00 4.09
294 295 4.798882 AGTATGCCTCTACTTGACTAGCT 58.201 43.478 0.00 0.00 0.00 3.32
295 296 5.766174 ACTAGTATGCCTCTACTTGACTAGC 59.234 44.000 0.00 0.00 38.86 3.42
296 297 6.993308 TCACTAGTATGCCTCTACTTGACTAG 59.007 42.308 0.00 0.00 40.35 2.57
297 298 6.766944 GTCACTAGTATGCCTCTACTTGACTA 59.233 42.308 0.00 0.00 36.95 2.59
298 299 5.591067 GTCACTAGTATGCCTCTACTTGACT 59.409 44.000 0.00 0.00 36.95 3.41
299 300 5.357314 TGTCACTAGTATGCCTCTACTTGAC 59.643 44.000 0.00 11.98 38.64 3.18
300 301 5.357314 GTGTCACTAGTATGCCTCTACTTGA 59.643 44.000 0.00 0.18 33.96 3.02
301 302 5.358442 AGTGTCACTAGTATGCCTCTACTTG 59.642 44.000 2.87 0.00 33.96 3.16
302 303 5.511363 AGTGTCACTAGTATGCCTCTACTT 58.489 41.667 2.87 0.00 33.96 2.24
303 304 5.118729 AGTGTCACTAGTATGCCTCTACT 57.881 43.478 2.87 0.00 36.04 2.57
304 305 5.838531 AAGTGTCACTAGTATGCCTCTAC 57.161 43.478 5.77 0.00 0.00 2.59
305 306 5.715279 ACAAAGTGTCACTAGTATGCCTCTA 59.285 40.000 5.77 0.00 0.00 2.43
306 307 4.528596 ACAAAGTGTCACTAGTATGCCTCT 59.471 41.667 5.77 0.00 0.00 3.69
307 308 4.822026 ACAAAGTGTCACTAGTATGCCTC 58.178 43.478 5.77 0.00 0.00 4.70
308 309 4.891992 ACAAAGTGTCACTAGTATGCCT 57.108 40.909 5.77 0.00 0.00 4.75
309 310 5.238650 ACAAACAAAGTGTCACTAGTATGCC 59.761 40.000 5.77 0.00 0.00 4.40
310 311 6.202954 AGACAAACAAAGTGTCACTAGTATGC 59.797 38.462 5.77 0.58 46.44 3.14
311 312 7.715265 AGACAAACAAAGTGTCACTAGTATG 57.285 36.000 5.77 6.23 46.44 2.39
312 313 9.424319 CATAGACAAACAAAGTGTCACTAGTAT 57.576 33.333 5.77 0.00 46.44 2.12
313 314 8.418662 ACATAGACAAACAAAGTGTCACTAGTA 58.581 33.333 5.77 0.00 46.44 1.82
314 315 7.272978 ACATAGACAAACAAAGTGTCACTAGT 58.727 34.615 5.77 5.56 46.44 2.57
315 316 7.715265 ACATAGACAAACAAAGTGTCACTAG 57.285 36.000 5.77 4.90 46.44 2.57
316 317 9.772973 AATACATAGACAAACAAAGTGTCACTA 57.227 29.630 5.77 0.00 46.44 2.74
317 318 8.677148 AATACATAGACAAACAAAGTGTCACT 57.323 30.769 0.00 0.00 46.44 3.41
318 319 8.556194 TGAATACATAGACAAACAAAGTGTCAC 58.444 33.333 7.26 0.00 46.44 3.67
319 320 8.556194 GTGAATACATAGACAAACAAAGTGTCA 58.444 33.333 7.26 0.00 46.44 3.58
320 321 8.556194 TGTGAATACATAGACAAACAAAGTGTC 58.444 33.333 0.00 0.00 44.75 3.67
321 322 8.342634 GTGTGAATACATAGACAAACAAAGTGT 58.657 33.333 0.00 0.00 39.39 3.55
322 323 8.341903 TGTGTGAATACATAGACAAACAAAGTG 58.658 33.333 0.00 0.00 39.39 3.16
323 324 8.445275 TGTGTGAATACATAGACAAACAAAGT 57.555 30.769 0.00 0.00 39.39 2.66
324 325 9.333497 CATGTGTGAATACATAGACAAACAAAG 57.667 33.333 0.00 0.00 39.17 2.77
325 326 8.845227 ACATGTGTGAATACATAGACAAACAAA 58.155 29.630 0.00 0.00 39.17 2.83
326 327 8.389779 ACATGTGTGAATACATAGACAAACAA 57.610 30.769 0.00 0.00 39.17 2.83
327 328 7.977789 ACATGTGTGAATACATAGACAAACA 57.022 32.000 0.00 0.00 39.17 2.83
337 338 8.608317 CGGAAACATAATACATGTGTGAATACA 58.392 33.333 9.11 0.00 34.63 2.29
338 339 8.067784 CCGGAAACATAATACATGTGTGAATAC 58.932 37.037 9.11 0.00 31.80 1.89
339 340 7.771361 ACCGGAAACATAATACATGTGTGAATA 59.229 33.333 9.46 0.00 31.80 1.75
340 341 6.601613 ACCGGAAACATAATACATGTGTGAAT 59.398 34.615 9.46 0.00 31.80 2.57
341 342 5.941058 ACCGGAAACATAATACATGTGTGAA 59.059 36.000 9.46 0.00 31.80 3.18
342 343 5.492895 ACCGGAAACATAATACATGTGTGA 58.507 37.500 9.46 0.00 31.80 3.58
343 344 5.811399 ACCGGAAACATAATACATGTGTG 57.189 39.130 9.46 4.81 31.80 3.82
344 345 7.925043 TTAACCGGAAACATAATACATGTGT 57.075 32.000 9.46 0.00 31.80 3.72
345 346 9.872757 GTATTAACCGGAAACATAATACATGTG 57.127 33.333 9.46 0.00 39.40 3.21
346 347 9.616156 TGTATTAACCGGAAACATAATACATGT 57.384 29.630 22.31 2.69 42.13 3.21
354 355 9.048446 GCTAGAATTGTATTAACCGGAAACATA 57.952 33.333 9.46 0.00 0.00 2.29
355 356 7.554835 TGCTAGAATTGTATTAACCGGAAACAT 59.445 33.333 9.46 0.00 0.00 2.71
356 357 6.879993 TGCTAGAATTGTATTAACCGGAAACA 59.120 34.615 9.46 1.34 0.00 2.83
357 358 7.311364 TGCTAGAATTGTATTAACCGGAAAC 57.689 36.000 9.46 0.00 0.00 2.78
358 359 7.771361 TCATGCTAGAATTGTATTAACCGGAAA 59.229 33.333 9.46 1.61 0.00 3.13
359 360 7.276658 TCATGCTAGAATTGTATTAACCGGAA 58.723 34.615 9.46 0.00 0.00 4.30
360 361 6.822442 TCATGCTAGAATTGTATTAACCGGA 58.178 36.000 9.46 0.00 0.00 5.14
361 362 7.490962 TTCATGCTAGAATTGTATTAACCGG 57.509 36.000 0.00 0.00 0.00 5.28
437 438 4.805609 GCTGAAGGAAATATGCCCTAGAGG 60.806 50.000 0.00 0.00 39.47 3.69
438 439 4.202398 TGCTGAAGGAAATATGCCCTAGAG 60.202 45.833 0.00 0.00 31.36 2.43
439 440 3.716353 TGCTGAAGGAAATATGCCCTAGA 59.284 43.478 0.00 0.00 31.36 2.43
440 441 4.070716 CTGCTGAAGGAAATATGCCCTAG 58.929 47.826 0.00 0.00 31.36 3.02
441 442 3.716353 TCTGCTGAAGGAAATATGCCCTA 59.284 43.478 0.00 0.00 31.36 3.53
442 443 2.511218 TCTGCTGAAGGAAATATGCCCT 59.489 45.455 0.00 0.00 0.00 5.19
443 444 2.936202 TCTGCTGAAGGAAATATGCCC 58.064 47.619 0.00 0.00 0.00 5.36
444 445 4.139786 TCATCTGCTGAAGGAAATATGCC 58.860 43.478 0.00 0.00 0.00 4.40
445 446 5.335740 CCATCATCTGCTGAAGGAAATATGC 60.336 44.000 0.00 0.00 44.02 3.14
446 447 6.002082 TCCATCATCTGCTGAAGGAAATATG 58.998 40.000 3.22 0.00 46.18 1.78
447 448 6.196918 TCCATCATCTGCTGAAGGAAATAT 57.803 37.500 3.22 0.00 46.18 1.28
448 449 5.635278 TCCATCATCTGCTGAAGGAAATA 57.365 39.130 3.22 0.00 46.18 1.40
449 450 4.515028 TCCATCATCTGCTGAAGGAAAT 57.485 40.909 3.22 0.00 46.18 2.17
452 453 1.140452 GCTCCATCATCTGCTGAAGGA 59.860 52.381 5.48 5.48 46.80 3.36
453 454 1.141254 AGCTCCATCATCTGCTGAAGG 59.859 52.381 0.00 0.00 42.90 3.46
454 455 2.623878 AGCTCCATCATCTGCTGAAG 57.376 50.000 0.00 0.00 37.44 3.02
455 456 2.103771 GGTAGCTCCATCATCTGCTGAA 59.896 50.000 0.00 0.00 37.44 3.02
456 457 1.690893 GGTAGCTCCATCATCTGCTGA 59.309 52.381 0.00 0.00 38.53 4.26
457 458 1.415289 TGGTAGCTCCATCATCTGCTG 59.585 52.381 0.00 0.00 41.93 4.41
484 485 2.032965 TGTAGGCTGTGGGGAGTTAA 57.967 50.000 0.00 0.00 0.00 2.01
1153 1159 3.762823 TGGTCAAGTTAAAAACGGGTTGT 59.237 39.130 0.00 0.00 36.23 3.32
1203 1209 7.225734 TGAACGATTTCAGACACAAATACAAGA 59.774 33.333 0.00 0.00 36.79 3.02
1265 1271 2.624838 TCCGTCCTTATCGGTTACATCC 59.375 50.000 4.36 0.00 46.86 3.51
1391 1397 3.636929 TACTGCCCCCGCAATGGTG 62.637 63.158 0.00 0.00 46.66 4.17
1658 1665 1.933853 CAACTACTTATGCGCCACTCC 59.066 52.381 4.18 0.00 0.00 3.85
1702 1709 2.733227 GCAACTCATTATGTGCCACTGC 60.733 50.000 0.00 0.00 38.26 4.40
1866 1879 1.066430 GTTGGCTACCATTCCACTCGA 60.066 52.381 0.00 0.00 31.53 4.04
1955 1968 3.884704 ATGGGGCGGTGTTGTGCAT 62.885 57.895 0.00 0.00 0.00 3.96
2037 2062 8.956533 ATAAAATTGTACAAACCAGCAACTTT 57.043 26.923 13.23 2.42 0.00 2.66
2126 2155 5.692115 TCCAGTGCTCCTAATGTATCAAA 57.308 39.130 0.00 0.00 0.00 2.69
2836 2876 2.637382 TCATAGTGCCCAGTTGAACAGA 59.363 45.455 0.00 0.00 0.00 3.41
2923 2964 1.043116 CAGGACTCACGGGGCTCATA 61.043 60.000 0.00 0.00 0.00 2.15
2933 2974 0.533032 GACCTACAGGCAGGACTCAC 59.467 60.000 0.00 0.00 39.18 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.