Multiple sequence alignment - TraesCS7A01G546500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G546500 chr7A 100.000 3975 0 0 1 3975 721922443 721918469 0.000000e+00 7341
1 TraesCS7A01G546500 chr7A 96.703 182 4 2 1276 1456 374559952 374559772 6.460000e-78 302
2 TraesCS7A01G546500 chr7A 96.175 183 7 0 1287 1469 126580566 126580384 2.320000e-77 300
3 TraesCS7A01G546500 chr7D 98.298 2527 37 4 1454 3975 626378657 626376132 0.000000e+00 4423
4 TraesCS7A01G546500 chr7D 95.743 1151 21 10 162 1290 626379779 626378635 0.000000e+00 1829
5 TraesCS7A01G546500 chr7D 91.961 311 8 9 307 601 443546248 443545939 1.710000e-113 420
6 TraesCS7A01G546500 chr7D 96.907 97 2 1 809 905 140797813 140797908 1.140000e-35 161
7 TraesCS7A01G546500 chr7B 97.388 1914 34 3 1454 3366 726156163 726154265 0.000000e+00 3243
8 TraesCS7A01G546500 chr7B 90.517 928 56 22 1 905 726157786 726156868 0.000000e+00 1197
9 TraesCS7A01G546500 chr7B 95.973 596 22 2 3381 3975 726154279 726153685 0.000000e+00 966
10 TraesCS7A01G546500 chr7B 97.449 392 9 1 900 1290 726156532 726156141 0.000000e+00 667
11 TraesCS7A01G546500 chr7B 80.972 247 31 4 25 255 281381600 281381846 8.770000e-42 182
12 TraesCS7A01G546500 chr5D 91.849 2012 123 24 1971 3975 44701011 44699034 0.000000e+00 2769
13 TraesCS7A01G546500 chr5D 91.459 1885 96 23 1944 3819 87541509 87539681 0.000000e+00 2529
14 TraesCS7A01G546500 chr5D 90.808 1893 98 37 1944 3819 122061081 122059248 0.000000e+00 2462
15 TraesCS7A01G546500 chr5D 85.167 809 68 26 3177 3975 44633233 44632467 0.000000e+00 782
16 TraesCS7A01G546500 chr5D 86.997 323 23 10 987 1290 44701673 44701351 2.940000e-91 346
17 TraesCS7A01G546500 chr5D 87.748 302 19 4 1487 1788 122061361 122061078 1.770000e-88 337
18 TraesCS7A01G546500 chr5D 89.865 148 12 1 1792 1936 213480658 213480805 1.890000e-43 187
19 TraesCS7A01G546500 chr5B 91.446 1777 117 18 1941 3712 44467206 44465460 0.000000e+00 2407
20 TraesCS7A01G546500 chr5B 88.179 313 26 5 986 1290 44467828 44467519 2.920000e-96 363
21 TraesCS7A01G546500 chr5B 98.324 179 2 1 1282 1459 339629969 339629791 2.980000e-81 313
22 TraesCS7A01G546500 chr5B 87.739 261 27 5 3716 3975 44465299 44465043 2.320000e-77 300
23 TraesCS7A01G546500 chr5A 90.053 1890 115 25 1944 3819 80511425 80509595 0.000000e+00 2381
24 TraesCS7A01G546500 chr5A 95.792 1426 46 6 1941 3364 35195430 35194017 0.000000e+00 2289
25 TraesCS7A01G546500 chr5A 89.186 1794 102 29 2043 3819 121720859 121719141 0.000000e+00 2154
26 TraesCS7A01G546500 chr5A 87.145 599 45 13 3381 3975 35194029 35193459 0.000000e+00 651
27 TraesCS7A01G546500 chr5A 91.646 395 19 5 900 1290 35196128 35195744 5.850000e-148 534
28 TraesCS7A01G546500 chr5A 91.908 346 15 5 1454 1788 35195767 35195424 4.650000e-129 472
29 TraesCS7A01G546500 chr5A 95.213 188 8 1 1944 2130 121721045 121720858 3.000000e-76 296
30 TraesCS7A01G546500 chr5A 75.881 369 52 25 542 905 598302807 598303143 1.910000e-33 154
31 TraesCS7A01G546500 chr3D 91.935 310 9 4 307 601 550608799 550608491 1.710000e-113 420
32 TraesCS7A01G546500 chr3D 90.968 310 12 8 307 601 555196213 555196521 1.720000e-108 403
33 TraesCS7A01G546500 chr3D 88.732 142 12 2 1791 1929 479627402 479627542 1.900000e-38 171
34 TraesCS7A01G546500 chr6D 91.290 310 11 2 307 601 412531996 412532304 3.700000e-110 409
35 TraesCS7A01G546500 chr4A 91.318 311 10 3 307 601 722721577 722721886 3.700000e-110 409
36 TraesCS7A01G546500 chr2D 91.234 308 10 5 310 601 385100039 385100345 1.720000e-108 403
37 TraesCS7A01G546500 chr2D 85.496 131 13 1 131 255 95533671 95533541 8.960000e-27 132
38 TraesCS7A01G546500 chr2A 90.968 310 11 10 307 601 2157102 2157409 6.190000e-108 401
39 TraesCS7A01G546500 chr2A 91.447 152 12 1 1791 1941 615288053 615287902 1.450000e-49 207
40 TraesCS7A01G546500 chr2A 87.591 137 14 3 1791 1924 13034818 13034682 5.320000e-34 156
41 TraesCS7A01G546500 chr3A 98.851 174 2 0 1289 1462 565776546 565776373 1.070000e-80 311
42 TraesCS7A01G546500 chr2B 99.415 171 1 0 1286 1456 87477831 87477661 1.070000e-80 311
43 TraesCS7A01G546500 chr2B 80.162 247 33 6 25 255 47176812 47177058 1.900000e-38 171
44 TraesCS7A01G546500 chr2B 89.051 137 11 2 1791 1924 18927091 18927226 2.460000e-37 167
45 TraesCS7A01G546500 chr2B 95.876 97 3 1 809 905 439355046 439355141 5.320000e-34 156
46 TraesCS7A01G546500 chr1A 95.385 195 7 2 1274 1468 249045023 249045215 3.860000e-80 309
47 TraesCS7A01G546500 chr4B 98.295 176 2 1 1289 1464 78609316 78609142 1.390000e-79 307
48 TraesCS7A01G546500 chr4B 94.416 197 7 4 1262 1456 553510491 553510685 2.320000e-77 300
49 TraesCS7A01G546500 chr4B 96.907 97 2 1 809 905 603094125 603094030 1.140000e-35 161
50 TraesCS7A01G546500 chr1B 96.703 182 4 2 1290 1469 158536305 158536124 6.460000e-78 302
51 TraesCS7A01G546500 chr1B 96.000 100 3 1 806 905 405389581 405389679 1.140000e-35 161
52 TraesCS7A01G546500 chr1B 86.667 135 12 2 1813 1941 230030551 230030417 1.150000e-30 145
53 TraesCS7A01G546500 chr4D 77.869 366 51 18 28 375 64622834 64623187 2.420000e-47 200
54 TraesCS7A01G546500 chr6B 97.000 100 2 1 806 905 57748445 57748543 2.460000e-37 167
55 TraesCS7A01G546500 chr6A 94.845 97 4 1 809 905 419487810 419487715 2.470000e-32 150


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G546500 chr7A 721918469 721922443 3974 True 7341.000000 7341 100.000000 1 3975 1 chr7A.!!$R3 3974
1 TraesCS7A01G546500 chr7D 626376132 626379779 3647 True 3126.000000 4423 97.020500 162 3975 2 chr7D.!!$R2 3813
2 TraesCS7A01G546500 chr7B 726153685 726157786 4101 True 1518.250000 3243 95.331750 1 3975 4 chr7B.!!$R1 3974
3 TraesCS7A01G546500 chr5D 87539681 87541509 1828 True 2529.000000 2529 91.459000 1944 3819 1 chr5D.!!$R2 1875
4 TraesCS7A01G546500 chr5D 44699034 44701673 2639 True 1557.500000 2769 89.423000 987 3975 2 chr5D.!!$R3 2988
5 TraesCS7A01G546500 chr5D 122059248 122061361 2113 True 1399.500000 2462 89.278000 1487 3819 2 chr5D.!!$R4 2332
6 TraesCS7A01G546500 chr5D 44632467 44633233 766 True 782.000000 782 85.167000 3177 3975 1 chr5D.!!$R1 798
7 TraesCS7A01G546500 chr5B 44465043 44467828 2785 True 1023.333333 2407 89.121333 986 3975 3 chr5B.!!$R2 2989
8 TraesCS7A01G546500 chr5A 80509595 80511425 1830 True 2381.000000 2381 90.053000 1944 3819 1 chr5A.!!$R1 1875
9 TraesCS7A01G546500 chr5A 121719141 121721045 1904 True 1225.000000 2154 92.199500 1944 3819 2 chr5A.!!$R3 1875
10 TraesCS7A01G546500 chr5A 35193459 35196128 2669 True 986.500000 2289 91.622750 900 3975 4 chr5A.!!$R2 3075

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
36 37 0.328258 ACACATGTAGGGGCCAGTTC 59.672 55.0 4.39 0.0 0.00 3.01 F
1328 1724 0.036875 GGTGAAGTCCTCCCCACTTG 59.963 60.0 0.00 0.0 34.10 3.16 F
1373 1769 0.037877 AGCCTCTCTGCATTGCACTT 59.962 50.0 7.38 0.0 33.79 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1354 1750 0.037877 AAGTGCAATGCAGAGAGGCT 59.962 50.000 8.73 0.0 40.08 4.58 R
2338 2840 8.859090 TGTTTCCATATCAAAGGGCTTAATATG 58.141 33.333 0.00 0.0 33.34 1.78 R
3402 3925 2.925724 CAACCGGCCCTAACATCATAA 58.074 47.619 0.00 0.0 0.00 1.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 0.539438 GGCTGGATTTGGTGACCACA 60.539 55.000 2.46 0.00 30.78 4.17
36 37 0.328258 ACACATGTAGGGGCCAGTTC 59.672 55.000 4.39 0.00 0.00 3.01
51 52 4.379918 GGCCAGTTCTTTTGAGCAGATTAC 60.380 45.833 0.00 0.00 31.68 1.89
62 63 3.003793 TGAGCAGATTACGGAGAATCTCG 59.996 47.826 3.96 2.65 42.96 4.04
67 68 3.566322 AGATTACGGAGAATCTCGGTCTG 59.434 47.826 23.64 5.37 41.38 3.51
71 72 2.761208 ACGGAGAATCTCGGTCTGAAAT 59.239 45.455 16.30 0.00 39.27 2.17
72 73 3.195825 ACGGAGAATCTCGGTCTGAAATT 59.804 43.478 16.30 0.00 39.27 1.82
73 74 4.184629 CGGAGAATCTCGGTCTGAAATTT 58.815 43.478 9.35 0.00 33.73 1.82
74 75 4.631813 CGGAGAATCTCGGTCTGAAATTTT 59.368 41.667 9.35 0.00 33.73 1.82
113 114 3.691118 TGATTGCCTCTCCAAAATCTTCG 59.309 43.478 0.00 0.00 31.66 3.79
114 115 3.417069 TTGCCTCTCCAAAATCTTCGA 57.583 42.857 0.00 0.00 0.00 3.71
126 131 9.547753 CTCCAAAATCTTCGAAGAATCCTAATA 57.452 33.333 30.18 11.87 45.90 0.98
157 163 9.506018 CCAAAATCTCCAAAATAGTTGGATTTT 57.494 29.630 8.20 9.97 46.47 1.82
160 166 6.850752 TCTCCAAAATAGTTGGATTTTCCC 57.149 37.500 8.20 0.00 46.47 3.97
166 172 8.757877 CCAAAATAGTTGGATTTTCCCAGAATA 58.242 33.333 0.00 0.00 42.06 1.75
208 217 6.546034 TCCCTCAAAAGAAAAGAGTTAACAGG 59.454 38.462 8.61 0.81 0.00 4.00
323 337 3.582148 TTCGCTCGGCTCGAACTA 58.418 55.556 3.86 0.00 40.49 2.24
647 683 5.132480 TGTGTCAATTGGATAGATGGATGGA 59.868 40.000 5.42 0.00 0.00 3.41
650 686 5.651139 GTCAATTGGATAGATGGATGGATGG 59.349 44.000 5.42 0.00 0.00 3.51
651 687 5.552766 TCAATTGGATAGATGGATGGATGGA 59.447 40.000 5.42 0.00 0.00 3.41
652 688 6.218938 TCAATTGGATAGATGGATGGATGGAT 59.781 38.462 5.42 0.00 0.00 3.41
653 689 5.446260 TTGGATAGATGGATGGATGGATG 57.554 43.478 0.00 0.00 0.00 3.51
711 747 6.024552 TGCCAGGTTTTTCTTGTTGATATC 57.975 37.500 0.00 0.00 0.00 1.63
767 803 6.743575 ATTGGTACTGTGAATCTTTGCTAC 57.256 37.500 0.00 0.00 0.00 3.58
774 810 5.755375 ACTGTGAATCTTTGCTACGATATGG 59.245 40.000 0.00 0.00 0.00 2.74
778 814 6.870965 GTGAATCTTTGCTACGATATGGAGAT 59.129 38.462 0.00 0.00 0.00 2.75
980 1356 3.325870 TCAGGTTAAGATGACTTGTGCG 58.674 45.455 0.00 0.00 37.53 5.34
984 1360 3.617263 GGTTAAGATGACTTGTGCGTAGG 59.383 47.826 0.00 0.00 37.53 3.18
1286 1682 8.877864 TTTGTGTTTGTTATCTGATATTCCCT 57.122 30.769 0.00 0.00 0.00 4.20
1287 1683 8.877864 TTGTGTTTGTTATCTGATATTCCCTT 57.122 30.769 0.00 0.00 0.00 3.95
1288 1684 8.877864 TGTGTTTGTTATCTGATATTCCCTTT 57.122 30.769 0.00 0.00 0.00 3.11
1289 1685 8.739039 TGTGTTTGTTATCTGATATTCCCTTTG 58.261 33.333 0.00 0.00 0.00 2.77
1290 1686 8.956426 GTGTTTGTTATCTGATATTCCCTTTGA 58.044 33.333 0.00 0.00 0.00 2.69
1291 1687 9.177608 TGTTTGTTATCTGATATTCCCTTTGAG 57.822 33.333 0.00 0.00 0.00 3.02
1292 1688 8.624776 GTTTGTTATCTGATATTCCCTTTGAGG 58.375 37.037 0.00 0.00 34.30 3.86
1301 1697 3.415186 CCTTTGAGGGCAGGCCTA 58.585 61.111 17.35 0.00 36.10 3.93
1302 1698 1.225704 CCTTTGAGGGCAGGCCTAG 59.774 63.158 17.35 10.01 36.10 3.02
1303 1699 1.452833 CTTTGAGGGCAGGCCTAGC 60.453 63.158 17.35 12.10 36.10 3.42
1304 1700 3.329542 TTTGAGGGCAGGCCTAGCG 62.330 63.158 17.35 0.00 36.10 4.26
1308 1704 4.883354 GGGCAGGCCTAGCGCAAT 62.883 66.667 27.47 0.00 43.54 3.56
1309 1705 3.589881 GGCAGGCCTAGCGCAATG 61.590 66.667 11.47 0.00 40.31 2.82
1310 1706 3.589881 GCAGGCCTAGCGCAATGG 61.590 66.667 11.47 9.75 40.31 3.16
1311 1707 2.124570 CAGGCCTAGCGCAATGGT 60.125 61.111 11.47 0.00 40.31 3.55
1312 1708 2.124570 AGGCCTAGCGCAATGGTG 60.125 61.111 11.47 0.00 40.31 4.17
1313 1709 2.124736 GGCCTAGCGCAATGGTGA 60.125 61.111 11.47 0.00 40.31 4.02
1314 1710 1.748879 GGCCTAGCGCAATGGTGAA 60.749 57.895 11.47 0.00 40.31 3.18
1315 1711 1.718757 GGCCTAGCGCAATGGTGAAG 61.719 60.000 11.47 0.00 40.31 3.02
1316 1712 1.026718 GCCTAGCGCAATGGTGAAGT 61.027 55.000 11.47 0.00 37.47 3.01
1317 1713 1.009829 CCTAGCGCAATGGTGAAGTC 58.990 55.000 11.47 0.00 0.00 3.01
1318 1714 1.009829 CTAGCGCAATGGTGAAGTCC 58.990 55.000 11.47 0.00 0.00 3.85
1319 1715 0.613260 TAGCGCAATGGTGAAGTCCT 59.387 50.000 11.47 0.00 0.00 3.85
1320 1716 0.674895 AGCGCAATGGTGAAGTCCTC 60.675 55.000 11.47 0.00 0.00 3.71
1321 1717 1.648467 GCGCAATGGTGAAGTCCTCC 61.648 60.000 0.30 0.00 0.00 4.30
1322 1718 1.026718 CGCAATGGTGAAGTCCTCCC 61.027 60.000 0.00 0.00 0.00 4.30
1323 1719 0.681243 GCAATGGTGAAGTCCTCCCC 60.681 60.000 0.00 0.00 0.00 4.81
1324 1720 0.698238 CAATGGTGAAGTCCTCCCCA 59.302 55.000 0.00 0.00 0.00 4.96
1325 1721 0.698818 AATGGTGAAGTCCTCCCCAC 59.301 55.000 0.00 0.00 0.00 4.61
1326 1722 0.178861 ATGGTGAAGTCCTCCCCACT 60.179 55.000 0.00 0.00 0.00 4.00
1327 1723 0.401395 TGGTGAAGTCCTCCCCACTT 60.401 55.000 0.00 0.00 36.77 3.16
1328 1724 0.036875 GGTGAAGTCCTCCCCACTTG 59.963 60.000 0.00 0.00 34.10 3.16
1329 1725 0.765510 GTGAAGTCCTCCCCACTTGT 59.234 55.000 0.00 0.00 34.10 3.16
1330 1726 0.764890 TGAAGTCCTCCCCACTTGTG 59.235 55.000 0.00 0.00 34.10 3.33
1331 1727 0.606673 GAAGTCCTCCCCACTTGTGC 60.607 60.000 0.00 0.00 34.10 4.57
1332 1728 2.034221 GTCCTCCCCACTTGTGCC 59.966 66.667 0.00 0.00 0.00 5.01
1333 1729 2.449518 TCCTCCCCACTTGTGCCA 60.450 61.111 0.00 0.00 0.00 4.92
1334 1730 2.081787 TCCTCCCCACTTGTGCCAA 61.082 57.895 0.00 0.00 0.00 4.52
1335 1731 1.604593 CCTCCCCACTTGTGCCAAG 60.605 63.158 11.87 11.87 0.00 3.61
1336 1732 1.455849 CTCCCCACTTGTGCCAAGA 59.544 57.895 18.22 0.00 0.00 3.02
1337 1733 0.607489 CTCCCCACTTGTGCCAAGAG 60.607 60.000 18.22 11.85 0.00 2.85
1338 1734 1.604593 CCCCACTTGTGCCAAGAGG 60.605 63.158 18.22 18.17 38.23 3.69
1339 1735 1.151450 CCCACTTGTGCCAAGAGGT 59.849 57.895 21.11 2.99 37.19 3.85
1340 1736 0.890996 CCCACTTGTGCCAAGAGGTC 60.891 60.000 21.11 0.00 37.19 3.85
1341 1737 0.890996 CCACTTGTGCCAAGAGGTCC 60.891 60.000 18.22 0.00 37.19 4.46
1342 1738 0.109342 CACTTGTGCCAAGAGGTCCT 59.891 55.000 18.22 0.00 37.19 3.85
1343 1739 0.109342 ACTTGTGCCAAGAGGTCCTG 59.891 55.000 18.22 0.00 37.19 3.86
1344 1740 0.607489 CTTGTGCCAAGAGGTCCTGG 60.607 60.000 0.00 0.00 37.19 4.45
1345 1741 2.067932 TTGTGCCAAGAGGTCCTGGG 62.068 60.000 0.00 0.00 39.14 4.45
1346 1742 2.121963 TGCCAAGAGGTCCTGGGT 60.122 61.111 0.00 0.00 38.32 4.51
1347 1743 1.774217 TGCCAAGAGGTCCTGGGTT 60.774 57.895 0.00 0.00 38.32 4.11
1348 1744 1.002011 GCCAAGAGGTCCTGGGTTC 60.002 63.158 0.00 0.00 38.32 3.62
1349 1745 1.296715 CCAAGAGGTCCTGGGTTCG 59.703 63.158 0.00 0.00 30.82 3.95
1350 1746 1.192146 CCAAGAGGTCCTGGGTTCGA 61.192 60.000 0.00 0.00 30.82 3.71
1351 1747 0.685097 CAAGAGGTCCTGGGTTCGAA 59.315 55.000 0.00 0.00 0.00 3.71
1352 1748 0.685660 AAGAGGTCCTGGGTTCGAAC 59.314 55.000 20.14 20.14 0.00 3.95
1363 1759 3.129792 GTTCGAACCAGCCTCTCTG 57.870 57.895 17.68 0.00 42.49 3.35
1364 1760 1.016653 GTTCGAACCAGCCTCTCTGC 61.017 60.000 17.68 0.00 41.50 4.26
1365 1761 1.471829 TTCGAACCAGCCTCTCTGCA 61.472 55.000 0.00 0.00 41.50 4.41
1366 1762 1.220206 CGAACCAGCCTCTCTGCAT 59.780 57.895 0.00 0.00 41.50 3.96
1367 1763 0.392193 CGAACCAGCCTCTCTGCATT 60.392 55.000 0.00 0.00 41.50 3.56
1368 1764 1.093159 GAACCAGCCTCTCTGCATTG 58.907 55.000 0.00 0.00 41.50 2.82
1369 1765 0.964358 AACCAGCCTCTCTGCATTGC 60.964 55.000 0.46 0.46 41.50 3.56
1370 1766 1.378119 CCAGCCTCTCTGCATTGCA 60.378 57.895 11.50 11.50 41.50 4.08
1371 1767 1.654954 CCAGCCTCTCTGCATTGCAC 61.655 60.000 7.38 0.00 41.50 4.57
1372 1768 0.677098 CAGCCTCTCTGCATTGCACT 60.677 55.000 7.38 0.00 35.78 4.40
1373 1769 0.037877 AGCCTCTCTGCATTGCACTT 59.962 50.000 7.38 0.00 33.79 3.16
1374 1770 0.886563 GCCTCTCTGCATTGCACTTT 59.113 50.000 7.38 0.00 33.79 2.66
1375 1771 1.402456 GCCTCTCTGCATTGCACTTTG 60.402 52.381 7.38 0.00 33.79 2.77
1376 1772 1.402456 CCTCTCTGCATTGCACTTTGC 60.402 52.381 7.38 8.20 45.29 3.68
1386 1782 3.339547 GCACTTTGCAGGGGTAAGA 57.660 52.632 2.16 0.00 44.26 2.10
1387 1783 0.881796 GCACTTTGCAGGGGTAAGAC 59.118 55.000 2.16 0.00 44.26 3.01
1388 1784 1.545651 GCACTTTGCAGGGGTAAGACT 60.546 52.381 2.16 0.00 44.26 3.24
1389 1785 2.290071 GCACTTTGCAGGGGTAAGACTA 60.290 50.000 2.16 0.00 44.26 2.59
1390 1786 3.600388 CACTTTGCAGGGGTAAGACTAG 58.400 50.000 2.16 0.00 0.00 2.57
1391 1787 2.572104 ACTTTGCAGGGGTAAGACTAGG 59.428 50.000 2.16 0.00 0.00 3.02
1392 1788 2.337359 TTGCAGGGGTAAGACTAGGT 57.663 50.000 0.00 0.00 0.00 3.08
1393 1789 2.337359 TGCAGGGGTAAGACTAGGTT 57.663 50.000 0.00 0.00 0.00 3.50
1394 1790 2.185387 TGCAGGGGTAAGACTAGGTTC 58.815 52.381 0.00 0.00 0.00 3.62
1395 1791 1.485480 GCAGGGGTAAGACTAGGTTCC 59.515 57.143 0.00 0.00 0.00 3.62
1396 1792 2.893153 GCAGGGGTAAGACTAGGTTCCT 60.893 54.545 0.00 0.00 0.00 3.36
1397 1793 3.629282 GCAGGGGTAAGACTAGGTTCCTA 60.629 52.174 0.00 0.00 0.00 2.94
1398 1794 4.817286 CAGGGGTAAGACTAGGTTCCTAT 58.183 47.826 0.00 0.00 0.00 2.57
1399 1795 5.694949 GCAGGGGTAAGACTAGGTTCCTATA 60.695 48.000 0.00 0.00 0.00 1.31
1400 1796 6.379579 CAGGGGTAAGACTAGGTTCCTATAA 58.620 44.000 0.00 0.00 0.00 0.98
1401 1797 7.017531 CAGGGGTAAGACTAGGTTCCTATAAT 58.982 42.308 0.00 0.00 0.00 1.28
1402 1798 7.178805 CAGGGGTAAGACTAGGTTCCTATAATC 59.821 44.444 0.00 0.00 0.00 1.75
1403 1799 6.440010 GGGGTAAGACTAGGTTCCTATAATCC 59.560 46.154 0.00 0.00 0.00 3.01
1404 1800 6.440010 GGGTAAGACTAGGTTCCTATAATCCC 59.560 46.154 0.00 4.36 0.00 3.85
1405 1801 7.247500 GGTAAGACTAGGTTCCTATAATCCCT 58.753 42.308 0.00 0.00 0.00 4.20
1406 1802 7.396907 GGTAAGACTAGGTTCCTATAATCCCTC 59.603 44.444 0.00 0.00 0.00 4.30
1407 1803 5.906254 AGACTAGGTTCCTATAATCCCTCC 58.094 45.833 0.00 0.00 0.00 4.30
1408 1804 5.024785 GACTAGGTTCCTATAATCCCTCCC 58.975 50.000 0.00 0.00 0.00 4.30
1409 1805 3.293215 AGGTTCCTATAATCCCTCCCC 57.707 52.381 0.00 0.00 0.00 4.81
1410 1806 2.531463 AGGTTCCTATAATCCCTCCCCA 59.469 50.000 0.00 0.00 0.00 4.96
1411 1807 2.913617 GGTTCCTATAATCCCTCCCCAG 59.086 54.545 0.00 0.00 0.00 4.45
1412 1808 3.441054 GGTTCCTATAATCCCTCCCCAGA 60.441 52.174 0.00 0.00 0.00 3.86
1413 1809 3.562108 TCCTATAATCCCTCCCCAGAC 57.438 52.381 0.00 0.00 0.00 3.51
1414 1810 2.113777 TCCTATAATCCCTCCCCAGACC 59.886 54.545 0.00 0.00 0.00 3.85
1415 1811 2.552367 CTATAATCCCTCCCCAGACCC 58.448 57.143 0.00 0.00 0.00 4.46
1416 1812 0.103876 ATAATCCCTCCCCAGACCCC 60.104 60.000 0.00 0.00 0.00 4.95
1417 1813 1.542093 TAATCCCTCCCCAGACCCCA 61.542 60.000 0.00 0.00 0.00 4.96
1418 1814 3.660092 ATCCCTCCCCAGACCCCAC 62.660 68.421 0.00 0.00 0.00 4.61
1420 1816 4.354943 CCTCCCCAGACCCCACCT 62.355 72.222 0.00 0.00 0.00 4.00
1421 1817 2.204151 CTCCCCAGACCCCACCTT 60.204 66.667 0.00 0.00 0.00 3.50
1422 1818 2.531685 TCCCCAGACCCCACCTTG 60.532 66.667 0.00 0.00 0.00 3.61
1423 1819 2.858974 CCCCAGACCCCACCTTGT 60.859 66.667 0.00 0.00 0.00 3.16
1424 1820 2.436109 CCCAGACCCCACCTTGTG 59.564 66.667 0.00 0.00 0.00 3.33
1425 1821 2.460853 CCCAGACCCCACCTTGTGT 61.461 63.158 0.00 0.00 0.00 3.72
1426 1822 1.228245 CCAGACCCCACCTTGTGTG 60.228 63.158 0.00 0.00 45.01 3.82
1433 1829 4.907457 CACCTTGTGTGGGAGCTT 57.093 55.556 0.00 0.00 41.52 3.74
1434 1830 2.633860 CACCTTGTGTGGGAGCTTC 58.366 57.895 0.00 0.00 41.52 3.86
1435 1831 0.109342 CACCTTGTGTGGGAGCTTCT 59.891 55.000 0.00 0.00 41.52 2.85
1436 1832 1.347707 CACCTTGTGTGGGAGCTTCTA 59.652 52.381 0.00 0.00 41.52 2.10
1437 1833 2.026822 CACCTTGTGTGGGAGCTTCTAT 60.027 50.000 0.00 0.00 41.52 1.98
1438 1834 2.026822 ACCTTGTGTGGGAGCTTCTATG 60.027 50.000 0.00 0.00 0.00 2.23
1439 1835 2.012673 CTTGTGTGGGAGCTTCTATGC 58.987 52.381 0.00 0.00 0.00 3.14
1440 1836 0.983467 TGTGTGGGAGCTTCTATGCA 59.017 50.000 0.00 0.00 34.99 3.96
1441 1837 1.339055 TGTGTGGGAGCTTCTATGCAC 60.339 52.381 0.00 0.00 34.99 4.57
1442 1838 1.065854 GTGTGGGAGCTTCTATGCACT 60.066 52.381 0.00 0.00 34.99 4.40
1443 1839 1.065926 TGTGGGAGCTTCTATGCACTG 60.066 52.381 0.00 0.00 34.99 3.66
1444 1840 0.543277 TGGGAGCTTCTATGCACTGG 59.457 55.000 0.00 0.00 34.99 4.00
1445 1841 0.179034 GGGAGCTTCTATGCACTGGG 60.179 60.000 0.00 0.00 34.99 4.45
1446 1842 0.543749 GGAGCTTCTATGCACTGGGT 59.456 55.000 0.00 0.00 34.99 4.51
1447 1843 1.474143 GGAGCTTCTATGCACTGGGTC 60.474 57.143 0.00 0.00 34.99 4.46
1448 1844 1.484240 GAGCTTCTATGCACTGGGTCT 59.516 52.381 0.00 0.00 34.99 3.85
1449 1845 1.209019 AGCTTCTATGCACTGGGTCTG 59.791 52.381 0.00 0.00 34.99 3.51
1450 1846 1.065854 GCTTCTATGCACTGGGTCTGT 60.066 52.381 0.00 0.00 0.00 3.41
1451 1847 2.898705 CTTCTATGCACTGGGTCTGTC 58.101 52.381 0.00 0.00 0.00 3.51
1452 1848 1.195115 TCTATGCACTGGGTCTGTCC 58.805 55.000 0.00 0.00 0.00 4.02
1456 1852 0.550914 TGCACTGGGTCTGTCCTTTT 59.449 50.000 0.00 0.00 36.25 2.27
1517 1924 4.086457 ACCGCCCTGATTCAAGTTTTAAT 58.914 39.130 0.00 0.00 0.00 1.40
1592 1999 5.610398 TGATGCCATTCGACTTGTATACAT 58.390 37.500 6.36 0.00 0.00 2.29
1722 2130 6.483640 GGTCCTACATTTGATACCTTAAGCTG 59.516 42.308 0.00 0.00 0.00 4.24
1810 2219 3.399330 GGGTTTTCAAGTCGATGAGTCA 58.601 45.455 0.00 0.00 0.00 3.41
1889 2301 2.967459 TCGCTAGTCGACACGTTTAA 57.033 45.000 19.50 0.00 43.16 1.52
2338 2840 5.569832 GCATACTTAAGGGATAAGCCTCCTC 60.570 48.000 7.53 0.00 44.11 3.71
3416 3941 7.801716 TCTGTACAATTTATGATGTTAGGGC 57.198 36.000 0.00 0.00 0.00 5.19
3628 4182 7.309621 GGCCTGACTTGCATCATAAATTCATAT 60.310 37.037 0.00 0.00 0.00 1.78
3865 4579 3.244875 ACACAGCCAGATGAACACCAATA 60.245 43.478 0.00 0.00 0.00 1.90
3923 4637 6.744175 ACATCTGTGATAATCCATGACTCT 57.256 37.500 0.00 0.00 0.00 3.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.372501 AAGAACTGGCCCCTACATGT 58.627 50.000 2.69 2.69 0.00 3.21
36 37 5.814705 AGATTCTCCGTAATCTGCTCAAAAG 59.185 40.000 4.62 0.00 43.09 2.27
51 52 2.941453 TTTCAGACCGAGATTCTCCG 57.059 50.000 8.09 4.42 0.00 4.63
73 74 6.259829 GGCAATCAAGTTCTTTTGGCTAAAAA 59.740 34.615 9.40 3.88 40.37 1.94
74 75 5.757808 GGCAATCAAGTTCTTTTGGCTAAAA 59.242 36.000 7.80 7.80 40.37 1.52
91 92 3.691118 CGAAGATTTTGGAGAGGCAATCA 59.309 43.478 0.00 0.00 0.00 2.57
126 131 8.096414 CCAACTATTTTGGAGATTTTGGATTGT 58.904 33.333 0.00 0.00 42.06 2.71
157 163 4.168675 AGCCAAAATCCTCATATTCTGGGA 59.831 41.667 0.00 0.00 0.00 4.37
160 166 6.429385 GGACTAGCCAAAATCCTCATATTCTG 59.571 42.308 0.00 0.00 36.34 3.02
166 172 3.126453 AGGGACTAGCCAAAATCCTCAT 58.874 45.455 5.70 0.00 36.02 2.90
647 683 9.962809 AACAAATTAAACAATCAATCCATCCAT 57.037 25.926 0.00 0.00 0.00 3.41
711 747 5.164233 CAGGACCAATATATAGCACTGACG 58.836 45.833 0.00 0.00 0.00 4.35
803 839 6.750501 CACCATTCTCACATTAGCATTGAAAG 59.249 38.462 0.00 0.00 0.00 2.62
980 1356 2.085320 TCAGACTGAAGCTCGACCTAC 58.915 52.381 1.64 0.00 0.00 3.18
984 1360 1.474478 TCCATCAGACTGAAGCTCGAC 59.526 52.381 9.70 0.00 0.00 4.20
1128 1523 9.802039 AATCCTTTAAACTTCCAATAGTGTGTA 57.198 29.630 0.00 0.00 0.00 2.90
1285 1681 1.452833 GCTAGGCCTGCCCTCAAAG 60.453 63.158 17.99 2.45 44.96 2.77
1286 1682 2.677228 GCTAGGCCTGCCCTCAAA 59.323 61.111 17.99 0.00 44.96 2.69
1287 1683 3.785859 CGCTAGGCCTGCCCTCAA 61.786 66.667 17.99 0.00 44.96 3.02
1291 1687 4.883354 ATTGCGCTAGGCCTGCCC 62.883 66.667 17.99 10.11 42.61 5.36
1292 1688 3.589881 CATTGCGCTAGGCCTGCC 61.590 66.667 17.99 11.31 42.61 4.85
1293 1689 3.589881 CCATTGCGCTAGGCCTGC 61.590 66.667 17.99 16.10 42.61 4.85
1294 1690 2.124570 ACCATTGCGCTAGGCCTG 60.125 61.111 17.99 6.68 42.61 4.85
1295 1691 2.124570 CACCATTGCGCTAGGCCT 60.125 61.111 11.78 11.78 42.61 5.19
1296 1692 1.718757 CTTCACCATTGCGCTAGGCC 61.719 60.000 9.73 0.00 42.61 5.19
1297 1693 1.026718 ACTTCACCATTGCGCTAGGC 61.027 55.000 9.73 0.00 43.96 3.93
1298 1694 1.009829 GACTTCACCATTGCGCTAGG 58.990 55.000 9.73 10.50 0.00 3.02
1299 1695 1.009829 GGACTTCACCATTGCGCTAG 58.990 55.000 9.73 0.00 0.00 3.42
1300 1696 0.613260 AGGACTTCACCATTGCGCTA 59.387 50.000 9.73 0.00 0.00 4.26
1301 1697 0.674895 GAGGACTTCACCATTGCGCT 60.675 55.000 9.73 0.00 0.00 5.92
1302 1698 1.648467 GGAGGACTTCACCATTGCGC 61.648 60.000 0.00 0.00 0.00 6.09
1303 1699 1.026718 GGGAGGACTTCACCATTGCG 61.027 60.000 0.00 0.00 0.00 4.85
1304 1700 2.873797 GGGAGGACTTCACCATTGC 58.126 57.895 0.00 0.00 0.00 3.56
1310 1706 0.765510 ACAAGTGGGGAGGACTTCAC 59.234 55.000 0.00 0.00 31.05 3.18
1311 1707 0.764890 CACAAGTGGGGAGGACTTCA 59.235 55.000 0.00 0.00 31.05 3.02
1312 1708 0.606673 GCACAAGTGGGGAGGACTTC 60.607 60.000 2.00 0.00 31.05 3.01
1313 1709 1.456287 GCACAAGTGGGGAGGACTT 59.544 57.895 2.00 0.00 33.82 3.01
1314 1710 2.529744 GGCACAAGTGGGGAGGACT 61.530 63.158 2.00 0.00 0.00 3.85
1315 1711 2.034221 GGCACAAGTGGGGAGGAC 59.966 66.667 2.00 0.00 0.00 3.85
1316 1712 2.449518 TGGCACAAGTGGGGAGGA 60.450 61.111 2.00 0.00 31.92 3.71
1327 1723 2.528818 CCCAGGACCTCTTGGCACA 61.529 63.158 0.00 0.00 41.31 4.57
1328 1724 2.069165 AACCCAGGACCTCTTGGCAC 62.069 60.000 0.00 0.00 41.31 5.01
1329 1725 1.774217 AACCCAGGACCTCTTGGCA 60.774 57.895 0.00 0.00 41.31 4.92
1330 1726 1.002011 GAACCCAGGACCTCTTGGC 60.002 63.158 0.00 0.00 41.31 4.52
1331 1727 1.192146 TCGAACCCAGGACCTCTTGG 61.192 60.000 0.00 0.00 42.20 3.61
1332 1728 0.685097 TTCGAACCCAGGACCTCTTG 59.315 55.000 0.00 0.00 0.00 3.02
1333 1729 0.685660 GTTCGAACCCAGGACCTCTT 59.314 55.000 17.68 0.00 0.00 2.85
1334 1730 1.192803 GGTTCGAACCCAGGACCTCT 61.193 60.000 33.02 0.00 43.43 3.69
1335 1731 1.295746 GGTTCGAACCCAGGACCTC 59.704 63.158 33.02 7.79 43.43 3.85
1336 1732 3.479979 GGTTCGAACCCAGGACCT 58.520 61.111 33.02 0.00 43.43 3.85
1345 1741 1.016653 GCAGAGAGGCTGGTTCGAAC 61.017 60.000 20.14 20.14 45.03 3.95
1346 1742 1.293498 GCAGAGAGGCTGGTTCGAA 59.707 57.895 0.00 0.00 45.03 3.71
1347 1743 1.260538 ATGCAGAGAGGCTGGTTCGA 61.261 55.000 0.00 0.00 45.03 3.71
1348 1744 0.392193 AATGCAGAGAGGCTGGTTCG 60.392 55.000 0.00 0.00 45.03 3.95
1349 1745 1.093159 CAATGCAGAGAGGCTGGTTC 58.907 55.000 0.00 0.00 45.03 3.62
1350 1746 0.964358 GCAATGCAGAGAGGCTGGTT 60.964 55.000 0.00 0.00 45.03 3.67
1351 1747 1.378250 GCAATGCAGAGAGGCTGGT 60.378 57.895 0.00 0.00 45.03 4.00
1352 1748 1.378119 TGCAATGCAGAGAGGCTGG 60.378 57.895 2.72 0.00 45.03 4.85
1354 1750 0.037877 AAGTGCAATGCAGAGAGGCT 59.962 50.000 8.73 0.00 40.08 4.58
1355 1751 0.886563 AAAGTGCAATGCAGAGAGGC 59.113 50.000 8.73 0.00 40.08 4.70
1356 1752 1.402456 GCAAAGTGCAATGCAGAGAGG 60.402 52.381 8.73 0.00 44.26 3.69
1357 1753 1.978542 GCAAAGTGCAATGCAGAGAG 58.021 50.000 8.73 0.33 44.26 3.20
1368 1764 0.881796 GTCTTACCCCTGCAAAGTGC 59.118 55.000 0.00 0.00 45.29 4.40
1369 1765 2.568623 AGTCTTACCCCTGCAAAGTG 57.431 50.000 0.00 0.00 0.00 3.16
1370 1766 2.572104 CCTAGTCTTACCCCTGCAAAGT 59.428 50.000 0.00 0.00 0.00 2.66
1371 1767 2.572104 ACCTAGTCTTACCCCTGCAAAG 59.428 50.000 0.00 0.00 0.00 2.77
1372 1768 2.627933 ACCTAGTCTTACCCCTGCAAA 58.372 47.619 0.00 0.00 0.00 3.68
1373 1769 2.337359 ACCTAGTCTTACCCCTGCAA 57.663 50.000 0.00 0.00 0.00 4.08
1374 1770 2.185387 GAACCTAGTCTTACCCCTGCA 58.815 52.381 0.00 0.00 0.00 4.41
1375 1771 1.485480 GGAACCTAGTCTTACCCCTGC 59.515 57.143 0.00 0.00 0.00 4.85
1376 1772 3.117552 AGGAACCTAGTCTTACCCCTG 57.882 52.381 0.00 0.00 0.00 4.45
1377 1773 6.618836 TTATAGGAACCTAGTCTTACCCCT 57.381 41.667 6.72 0.00 31.45 4.79
1378 1774 6.440010 GGATTATAGGAACCTAGTCTTACCCC 59.560 46.154 6.72 0.00 31.45 4.95
1379 1775 6.440010 GGGATTATAGGAACCTAGTCTTACCC 59.560 46.154 6.72 9.62 31.45 3.69
1380 1776 7.247500 AGGGATTATAGGAACCTAGTCTTACC 58.753 42.308 6.72 4.95 31.45 2.85
1381 1777 7.396907 GGAGGGATTATAGGAACCTAGTCTTAC 59.603 44.444 6.72 0.00 31.45 2.34
1382 1778 7.477008 GGAGGGATTATAGGAACCTAGTCTTA 58.523 42.308 6.72 0.00 31.45 2.10
1383 1779 6.324544 GGAGGGATTATAGGAACCTAGTCTT 58.675 44.000 6.72 0.00 31.45 3.01
1384 1780 5.222589 GGGAGGGATTATAGGAACCTAGTCT 60.223 48.000 6.72 0.00 31.45 3.24
1385 1781 5.024785 GGGAGGGATTATAGGAACCTAGTC 58.975 50.000 6.72 4.93 31.45 2.59
1386 1782 4.202912 GGGGAGGGATTATAGGAACCTAGT 60.203 50.000 6.72 0.00 31.45 2.57
1387 1783 4.202901 TGGGGAGGGATTATAGGAACCTAG 60.203 50.000 6.72 0.00 31.45 3.02
1388 1784 3.741438 TGGGGAGGGATTATAGGAACCTA 59.259 47.826 2.93 2.93 0.00 3.08
1389 1785 2.531463 TGGGGAGGGATTATAGGAACCT 59.469 50.000 0.00 0.00 0.00 3.50
1390 1786 2.913617 CTGGGGAGGGATTATAGGAACC 59.086 54.545 0.00 0.00 0.00 3.62
1391 1787 3.583526 GTCTGGGGAGGGATTATAGGAAC 59.416 52.174 0.00 0.00 0.00 3.62
1392 1788 3.441054 GGTCTGGGGAGGGATTATAGGAA 60.441 52.174 0.00 0.00 0.00 3.36
1393 1789 2.113777 GGTCTGGGGAGGGATTATAGGA 59.886 54.545 0.00 0.00 0.00 2.94
1394 1790 2.552367 GGTCTGGGGAGGGATTATAGG 58.448 57.143 0.00 0.00 0.00 2.57
1395 1791 2.552367 GGGTCTGGGGAGGGATTATAG 58.448 57.143 0.00 0.00 0.00 1.31
1396 1792 1.153565 GGGGTCTGGGGAGGGATTATA 59.846 57.143 0.00 0.00 0.00 0.98
1397 1793 0.103876 GGGGTCTGGGGAGGGATTAT 60.104 60.000 0.00 0.00 0.00 1.28
1398 1794 1.320512 GGGGTCTGGGGAGGGATTA 59.679 63.158 0.00 0.00 0.00 1.75
1399 1795 2.044620 GGGGTCTGGGGAGGGATT 59.955 66.667 0.00 0.00 0.00 3.01
1400 1796 3.300962 TGGGGTCTGGGGAGGGAT 61.301 66.667 0.00 0.00 0.00 3.85
1401 1797 4.348495 GTGGGGTCTGGGGAGGGA 62.348 72.222 0.00 0.00 0.00 4.20
1403 1799 3.891432 AAGGTGGGGTCTGGGGAGG 62.891 68.421 0.00 0.00 0.00 4.30
1404 1800 2.204151 AAGGTGGGGTCTGGGGAG 60.204 66.667 0.00 0.00 0.00 4.30
1405 1801 2.531685 CAAGGTGGGGTCTGGGGA 60.532 66.667 0.00 0.00 0.00 4.81
1406 1802 2.858974 ACAAGGTGGGGTCTGGGG 60.859 66.667 0.00 0.00 0.00 4.96
1407 1803 2.436109 CACAAGGTGGGGTCTGGG 59.564 66.667 0.00 0.00 0.00 4.45
1408 1804 1.228245 CACACAAGGTGGGGTCTGG 60.228 63.158 1.07 0.00 44.04 3.86
1409 1805 4.481195 CACACAAGGTGGGGTCTG 57.519 61.111 1.07 0.00 44.04 3.51
1417 1813 1.729586 TAGAAGCTCCCACACAAGGT 58.270 50.000 0.00 0.00 0.00 3.50
1418 1814 2.636830 CATAGAAGCTCCCACACAAGG 58.363 52.381 0.00 0.00 0.00 3.61
1419 1815 2.012673 GCATAGAAGCTCCCACACAAG 58.987 52.381 0.00 0.00 0.00 3.16
1420 1816 1.350684 TGCATAGAAGCTCCCACACAA 59.649 47.619 0.00 0.00 34.99 3.33
1421 1817 0.983467 TGCATAGAAGCTCCCACACA 59.017 50.000 0.00 0.00 34.99 3.72
1422 1818 1.065854 AGTGCATAGAAGCTCCCACAC 60.066 52.381 0.00 0.00 34.99 3.82
1423 1819 1.065926 CAGTGCATAGAAGCTCCCACA 60.066 52.381 0.00 0.00 34.99 4.17
1424 1820 1.661341 CAGTGCATAGAAGCTCCCAC 58.339 55.000 0.00 0.00 34.99 4.61
1425 1821 0.543277 CCAGTGCATAGAAGCTCCCA 59.457 55.000 0.00 0.00 34.99 4.37
1426 1822 0.179034 CCCAGTGCATAGAAGCTCCC 60.179 60.000 0.00 0.00 34.99 4.30
1427 1823 0.543749 ACCCAGTGCATAGAAGCTCC 59.456 55.000 0.00 0.00 34.99 4.70
1428 1824 1.484240 AGACCCAGTGCATAGAAGCTC 59.516 52.381 0.00 0.00 34.99 4.09
1429 1825 1.209019 CAGACCCAGTGCATAGAAGCT 59.791 52.381 0.00 0.00 34.99 3.74
1430 1826 1.065854 ACAGACCCAGTGCATAGAAGC 60.066 52.381 0.00 0.00 0.00 3.86
1431 1827 2.419297 GGACAGACCCAGTGCATAGAAG 60.419 54.545 0.00 0.00 0.00 2.85
1432 1828 1.555075 GGACAGACCCAGTGCATAGAA 59.445 52.381 0.00 0.00 0.00 2.10
1433 1829 1.195115 GGACAGACCCAGTGCATAGA 58.805 55.000 0.00 0.00 0.00 1.98
1434 1830 1.198713 AGGACAGACCCAGTGCATAG 58.801 55.000 0.00 0.00 40.05 2.23
1435 1831 1.656587 AAGGACAGACCCAGTGCATA 58.343 50.000 0.00 0.00 40.05 3.14
1436 1832 0.773644 AAAGGACAGACCCAGTGCAT 59.226 50.000 0.00 0.00 40.05 3.96
1437 1833 0.550914 AAAAGGACAGACCCAGTGCA 59.449 50.000 0.00 0.00 40.05 4.57
1438 1834 1.692411 AAAAAGGACAGACCCAGTGC 58.308 50.000 0.00 0.00 40.05 4.40
1541 1948 4.350225 TGTAACATAACCCAGTAACCCACA 59.650 41.667 0.00 0.00 0.00 4.17
1623 2030 6.441093 TTTTGCTGATGGCTACAAGATAAG 57.559 37.500 0.00 0.00 42.39 1.73
1722 2130 1.817099 CGGTTCCAGAGATGCTGCC 60.817 63.158 0.00 0.00 43.50 4.85
1810 2219 1.392710 CCGAGTCGCTACCCCAGAAT 61.393 60.000 7.12 0.00 0.00 2.40
2338 2840 8.859090 TGTTTCCATATCAAAGGGCTTAATATG 58.141 33.333 0.00 0.00 33.34 1.78
3402 3925 2.925724 CAACCGGCCCTAACATCATAA 58.074 47.619 0.00 0.00 0.00 1.90
3404 3929 0.751643 GCAACCGGCCCTAACATCAT 60.752 55.000 0.00 0.00 36.11 2.45
3561 4101 3.379452 AGTATAGAAAGTCAGCAGGCCT 58.621 45.455 0.00 0.00 0.00 5.19
3628 4182 5.419542 ACCGTATACGACTAGTGACTACAA 58.580 41.667 26.37 0.00 43.02 2.41
3714 4427 6.229561 AGTAAACTGCGAGTGATCTTTTTC 57.770 37.500 0.00 0.00 0.00 2.29
3784 4497 4.683832 AGATTATACAAGGTGCAGACGTC 58.316 43.478 7.70 7.70 0.00 4.34
3836 4550 2.229792 TCATCTGGCTGTGTTTTCCAC 58.770 47.619 0.00 0.00 44.78 4.02
3847 4561 2.092212 CCCTATTGGTGTTCATCTGGCT 60.092 50.000 0.00 0.00 0.00 4.75
3865 4579 2.676748 TGTTTGCCAATGTTTCTCCCT 58.323 42.857 0.00 0.00 0.00 4.20
3900 4614 6.744175 AGAGTCATGGATTATCACAGATGT 57.256 37.500 0.00 0.00 0.00 3.06
3923 4637 9.802039 ATCACCCACATAAAAGTAAAGAGTTAA 57.198 29.630 0.00 0.00 0.00 2.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.