Multiple sequence alignment - TraesCS7A01G545800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G545800 chr7A 100.000 2060 0 0 1 2060 721718100 721720159 0.000000e+00 3805.0
1 TraesCS7A01G545800 chr7A 100.000 391 0 0 2516 2906 721720615 721721005 0.000000e+00 723.0
2 TraesCS7A01G545800 chr7A 80.228 966 121 43 1080 2001 721779773 721780712 0.000000e+00 662.0
3 TraesCS7A01G545800 chr7A 80.987 831 127 25 1083 1896 721818411 721819227 5.280000e-177 630.0
4 TraesCS7A01G545800 chr7A 80.359 835 131 25 1083 1896 721893818 721894640 1.150000e-168 603.0
5 TraesCS7A01G545800 chrUn 84.898 1768 160 43 369 2059 87875186 87876923 0.000000e+00 1687.0
6 TraesCS7A01G545800 chrUn 79.862 869 141 26 1086 1934 87863303 87864157 3.200000e-169 604.0
7 TraesCS7A01G545800 chrUn 78.342 965 151 34 1086 2015 87838278 87839219 3.250000e-159 571.0
8 TraesCS7A01G545800 chr7D 88.288 1332 92 27 779 2060 626232703 626234020 0.000000e+00 1537.0
9 TraesCS7A01G545800 chr7D 80.999 821 123 19 1083 1882 626299077 626299885 3.180000e-174 621.0
10 TraesCS7A01G545800 chr7D 78.915 811 127 27 1086 1865 626260123 626260920 7.180000e-141 510.0
11 TraesCS7A01G545800 chr7D 89.286 224 11 6 2516 2733 626234144 626234360 4.770000e-68 268.0
12 TraesCS7A01G545800 chr7D 86.000 100 4 2 2807 2906 626234361 626234450 6.630000e-17 99.0
13 TraesCS7A01G545800 chr7D 82.000 100 5 7 672 758 626232618 626232717 4.020000e-09 73.1
14 TraesCS7A01G545800 chr7B 86.692 1330 109 25 779 2060 726004292 726005601 0.000000e+00 1413.0
15 TraesCS7A01G545800 chr7B 81.459 809 123 19 1086 1882 725813162 725812369 3.160000e-179 638.0
16 TraesCS7A01G545800 chr7B 80.023 871 139 24 1083 1934 726016746 726017600 1.910000e-171 612.0
17 TraesCS7A01G545800 chr7B 78.132 878 124 39 1082 1922 726009877 726010723 2.010000e-136 496.0
18 TraesCS7A01G545800 chr7B 86.480 392 33 12 2516 2906 725823370 725822998 2.080000e-111 412.0
19 TraesCS7A01G545800 chr7B 83.516 91 11 4 672 758 726004216 726004306 6.670000e-12 82.4
20 TraesCS7A01G545800 chr5D 79.216 510 86 17 6 502 521088483 521087981 1.290000e-88 337.0
21 TraesCS7A01G545800 chr5D 81.457 302 52 4 37 336 119497066 119496767 8.040000e-61 244.0
22 TraesCS7A01G545800 chr3D 84.211 304 42 5 29 331 603433355 603433057 1.020000e-74 291.0
23 TraesCS7A01G545800 chr2D 78.288 479 83 19 33 499 433723649 433723180 3.660000e-74 289.0
24 TraesCS7A01G545800 chr2D 82.060 301 52 2 38 337 509760327 509760028 3.720000e-64 255.0
25 TraesCS7A01G545800 chr6A 82.903 310 47 5 29 337 509557265 509556961 1.030000e-69 274.0
26 TraesCS7A01G545800 chr5B 78.017 464 75 18 46 502 548316321 548315878 1.720000e-67 267.0
27 TraesCS7A01G545800 chr5B 78.930 299 59 4 40 337 292161112 292161407 1.770000e-47 200.0
28 TraesCS7A01G545800 chr6B 82.879 257 36 6 106 359 554647007 554646756 1.050000e-54 224.0
29 TraesCS7A01G545800 chr6B 80.734 109 13 7 408 511 586714705 586714600 8.630000e-11 78.7
30 TraesCS7A01G545800 chr2A 79.062 320 62 3 38 356 653410448 653410133 6.310000e-52 215.0
31 TraesCS7A01G545800 chr2A 94.737 38 2 0 457 494 757546469 757546432 3.130000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G545800 chr7A 721718100 721721005 2905 False 2264.000 3805 100.0000 1 2906 2 chr7A.!!$F4 2905
1 TraesCS7A01G545800 chr7A 721779773 721780712 939 False 662.000 662 80.2280 1080 2001 1 chr7A.!!$F1 921
2 TraesCS7A01G545800 chr7A 721818411 721819227 816 False 630.000 630 80.9870 1083 1896 1 chr7A.!!$F2 813
3 TraesCS7A01G545800 chr7A 721893818 721894640 822 False 603.000 603 80.3590 1083 1896 1 chr7A.!!$F3 813
4 TraesCS7A01G545800 chrUn 87875186 87876923 1737 False 1687.000 1687 84.8980 369 2059 1 chrUn.!!$F3 1690
5 TraesCS7A01G545800 chrUn 87863303 87864157 854 False 604.000 604 79.8620 1086 1934 1 chrUn.!!$F2 848
6 TraesCS7A01G545800 chrUn 87838278 87839219 941 False 571.000 571 78.3420 1086 2015 1 chrUn.!!$F1 929
7 TraesCS7A01G545800 chr7D 626299077 626299885 808 False 621.000 621 80.9990 1083 1882 1 chr7D.!!$F2 799
8 TraesCS7A01G545800 chr7D 626260123 626260920 797 False 510.000 510 78.9150 1086 1865 1 chr7D.!!$F1 779
9 TraesCS7A01G545800 chr7D 626232618 626234450 1832 False 494.275 1537 86.3935 672 2906 4 chr7D.!!$F3 2234
10 TraesCS7A01G545800 chr7B 726004216 726005601 1385 False 747.700 1413 85.1040 672 2060 2 chr7B.!!$F3 1388
11 TraesCS7A01G545800 chr7B 725812369 725813162 793 True 638.000 638 81.4590 1086 1882 1 chr7B.!!$R1 796
12 TraesCS7A01G545800 chr7B 726016746 726017600 854 False 612.000 612 80.0230 1083 1934 1 chr7B.!!$F2 851
13 TraesCS7A01G545800 chr7B 726009877 726010723 846 False 496.000 496 78.1320 1082 1922 1 chr7B.!!$F1 840
14 TraesCS7A01G545800 chr5D 521087981 521088483 502 True 337.000 337 79.2160 6 502 1 chr5D.!!$R2 496

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
593 620 0.107410 CATTGGGGTGCTTAGGCGTA 60.107 55.0 0.0 0.0 42.25 4.42 F
594 621 0.180406 ATTGGGGTGCTTAGGCGTAG 59.820 55.0 0.0 0.0 42.25 3.51 F
1613 1759 0.244721 GAAATTCCTGGTGCCACTGC 59.755 55.0 0.0 0.0 38.26 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1647 1793 0.374758 GCGTCATGTACTGCCATGTG 59.625 55.000 7.51 4.25 42.29 3.21 R
1896 2045 2.440253 TCTGAGCTCCTACTACTCCTCC 59.560 54.545 12.15 0.00 0.00 4.30 R
2870 3047 1.382695 GATGGGGAGGAAGGACGGA 60.383 63.158 0.00 0.00 0.00 4.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 2.027625 GCCGACAGCTGTGTGTACC 61.028 63.158 27.27 7.57 36.88 3.34
32 33 1.374252 CCGACAGCTGTGTGTACCC 60.374 63.158 27.27 6.75 36.88 3.69
33 34 1.733041 CGACAGCTGTGTGTACCCG 60.733 63.158 27.27 15.82 36.88 5.28
34 35 1.366366 GACAGCTGTGTGTACCCGT 59.634 57.895 27.27 0.00 36.88 5.28
36 37 1.733041 CAGCTGTGTGTACCCGTCG 60.733 63.158 5.25 0.00 0.00 5.12
40 41 4.347453 GTGTGTACCCGTCGCCGT 62.347 66.667 0.00 0.00 0.00 5.68
42 43 4.783734 GTGTACCCGTCGCCGTCC 62.784 72.222 0.00 0.00 0.00 4.79
44 45 3.830192 GTACCCGTCGCCGTCCAT 61.830 66.667 0.00 0.00 0.00 3.41
47 48 4.143333 CCCGTCGCCGTCCATCTT 62.143 66.667 0.00 0.00 0.00 2.40
48 49 2.125673 CCGTCGCCGTCCATCTTT 60.126 61.111 0.00 0.00 0.00 2.52
49 50 2.165301 CCGTCGCCGTCCATCTTTC 61.165 63.158 0.00 0.00 0.00 2.62
50 51 2.505498 CGTCGCCGTCCATCTTTCG 61.505 63.158 0.00 0.00 0.00 3.46
51 52 2.165301 GTCGCCGTCCATCTTTCGG 61.165 63.158 0.00 0.00 45.94 4.30
54 55 2.987125 CCGTCCATCTTTCGGGGT 59.013 61.111 0.00 0.00 40.49 4.95
78 79 1.598130 GTGGCAGGTGGACAGTGAC 60.598 63.158 0.00 0.00 32.72 3.67
83 84 2.207924 AGGTGGACAGTGACGGACC 61.208 63.158 0.00 0.50 0.00 4.46
84 85 2.207924 GGTGGACAGTGACGGACCT 61.208 63.158 5.84 0.00 0.00 3.85
87 88 1.292541 GGACAGTGACGGACCTTCC 59.707 63.158 0.00 0.00 0.00 3.46
89 90 0.319641 GACAGTGACGGACCTTCCAC 60.320 60.000 0.00 0.00 35.91 4.02
113 114 1.320555 CATCGTCGAAATCACGTCCAC 59.679 52.381 0.00 0.00 38.45 4.02
119 120 3.524648 AAATCACGTCCACCGGCGT 62.525 57.895 6.01 0.00 42.24 5.68
120 121 3.927163 AATCACGTCCACCGGCGTC 62.927 63.158 6.01 0.00 42.24 5.19
136 137 2.022129 GTCAGCAACGGACAGGTCG 61.022 63.158 0.00 0.00 35.36 4.79
138 139 3.923864 AGCAACGGACAGGTCGCA 61.924 61.111 0.00 0.00 0.00 5.10
155 156 2.005451 CGCAGACTCCTTTGAGAATGG 58.995 52.381 0.00 0.00 41.42 3.16
166 167 0.183492 TGAGAATGGGTAGGGCATGC 59.817 55.000 9.90 9.90 0.00 4.06
170 171 2.343475 AATGGGTAGGGCATGCGAGG 62.343 60.000 12.44 0.00 0.00 4.63
171 172 4.937431 GGGTAGGGCATGCGAGGC 62.937 72.222 12.44 1.96 0.00 4.70
209 210 4.083862 GTGGGCCTGTCCGTCTCC 62.084 72.222 4.53 0.00 34.94 3.71
221 222 2.099427 GTCCGTCTCCCATGTTCTACTC 59.901 54.545 0.00 0.00 0.00 2.59
224 225 3.181485 CCGTCTCCCATGTTCTACTCTTC 60.181 52.174 0.00 0.00 0.00 2.87
225 226 3.697045 CGTCTCCCATGTTCTACTCTTCT 59.303 47.826 0.00 0.00 0.00 2.85
226 227 4.201970 CGTCTCCCATGTTCTACTCTTCTC 60.202 50.000 0.00 0.00 0.00 2.87
227 228 4.098807 GTCTCCCATGTTCTACTCTTCTCC 59.901 50.000 0.00 0.00 0.00 3.71
228 229 4.026744 CTCCCATGTTCTACTCTTCTCCA 58.973 47.826 0.00 0.00 0.00 3.86
229 230 3.769844 TCCCATGTTCTACTCTTCTCCAC 59.230 47.826 0.00 0.00 0.00 4.02
230 231 3.118592 CCCATGTTCTACTCTTCTCCACC 60.119 52.174 0.00 0.00 0.00 4.61
231 232 3.429547 CCATGTTCTACTCTTCTCCACCG 60.430 52.174 0.00 0.00 0.00 4.94
232 233 2.168496 TGTTCTACTCTTCTCCACCGG 58.832 52.381 0.00 0.00 0.00 5.28
233 234 2.224942 TGTTCTACTCTTCTCCACCGGA 60.225 50.000 9.46 0.00 0.00 5.14
242 243 2.920912 TCCACCGGAGACCACACC 60.921 66.667 9.46 0.00 0.00 4.16
243 244 2.923035 CCACCGGAGACCACACCT 60.923 66.667 9.46 0.00 0.00 4.00
244 245 2.657237 CACCGGAGACCACACCTC 59.343 66.667 9.46 0.00 0.00 3.85
245 246 2.603776 ACCGGAGACCACACCTCC 60.604 66.667 9.46 0.00 45.16 4.30
250 251 3.917072 GAGACCACACCTCCACTTC 57.083 57.895 0.00 0.00 0.00 3.01
251 252 1.048601 GAGACCACACCTCCACTTCA 58.951 55.000 0.00 0.00 0.00 3.02
252 253 0.759346 AGACCACACCTCCACTTCAC 59.241 55.000 0.00 0.00 0.00 3.18
253 254 0.600255 GACCACACCTCCACTTCACG 60.600 60.000 0.00 0.00 0.00 4.35
254 255 1.301716 CCACACCTCCACTTCACGG 60.302 63.158 0.00 0.00 0.00 4.94
255 256 1.301716 CACACCTCCACTTCACGGG 60.302 63.158 0.00 0.00 0.00 5.28
256 257 1.764854 ACACCTCCACTTCACGGGT 60.765 57.895 0.00 0.00 0.00 5.28
257 258 1.004918 CACCTCCACTTCACGGGTC 60.005 63.158 0.00 0.00 0.00 4.46
258 259 1.152312 ACCTCCACTTCACGGGTCT 60.152 57.895 0.00 0.00 0.00 3.85
259 260 0.763223 ACCTCCACTTCACGGGTCTT 60.763 55.000 0.00 0.00 0.00 3.01
260 261 0.320771 CCTCCACTTCACGGGTCTTG 60.321 60.000 0.00 0.00 0.00 3.02
261 262 0.679505 CTCCACTTCACGGGTCTTGA 59.320 55.000 0.00 0.00 0.00 3.02
262 263 1.070134 CTCCACTTCACGGGTCTTGAA 59.930 52.381 0.00 0.00 0.00 2.69
263 264 1.202604 TCCACTTCACGGGTCTTGAAC 60.203 52.381 0.00 0.00 0.00 3.18
272 273 3.884226 GGTCTTGAACCCCTCCATC 57.116 57.895 0.00 0.00 42.85 3.51
273 274 0.991920 GGTCTTGAACCCCTCCATCA 59.008 55.000 0.00 0.00 42.85 3.07
274 275 1.566231 GGTCTTGAACCCCTCCATCAT 59.434 52.381 0.00 0.00 42.85 2.45
275 276 2.024941 GGTCTTGAACCCCTCCATCATT 60.025 50.000 0.00 0.00 42.85 2.57
276 277 3.282885 GTCTTGAACCCCTCCATCATTC 58.717 50.000 0.00 0.00 0.00 2.67
277 278 2.918934 TCTTGAACCCCTCCATCATTCA 59.081 45.455 0.00 0.00 0.00 2.57
278 279 3.528905 TCTTGAACCCCTCCATCATTCAT 59.471 43.478 0.00 0.00 0.00 2.57
279 280 3.301794 TGAACCCCTCCATCATTCATG 57.698 47.619 0.00 0.00 0.00 3.07
280 281 2.851821 TGAACCCCTCCATCATTCATGA 59.148 45.455 0.00 0.00 41.70 3.07
281 282 3.269118 TGAACCCCTCCATCATTCATGAA 59.731 43.478 11.26 11.26 40.69 2.57
282 283 3.589951 ACCCCTCCATCATTCATGAAG 57.410 47.619 14.54 6.44 40.69 3.02
283 284 3.125656 ACCCCTCCATCATTCATGAAGA 58.874 45.455 14.54 11.42 40.69 2.87
284 285 3.117738 ACCCCTCCATCATTCATGAAGAC 60.118 47.826 14.54 0.00 40.69 3.01
285 286 3.136763 CCCTCCATCATTCATGAAGACG 58.863 50.000 14.54 5.22 40.69 4.18
286 287 3.136763 CCTCCATCATTCATGAAGACGG 58.863 50.000 14.54 12.69 40.69 4.79
287 288 2.547211 CTCCATCATTCATGAAGACGGC 59.453 50.000 14.54 0.00 40.69 5.68
288 289 2.093021 TCCATCATTCATGAAGACGGCA 60.093 45.455 14.54 2.39 40.69 5.69
289 290 2.289820 CCATCATTCATGAAGACGGCAG 59.710 50.000 14.54 0.39 40.69 4.85
290 291 3.200483 CATCATTCATGAAGACGGCAGA 58.800 45.455 14.54 3.72 40.69 4.26
291 292 3.548745 TCATTCATGAAGACGGCAGAT 57.451 42.857 14.54 0.00 33.08 2.90
292 293 3.200483 TCATTCATGAAGACGGCAGATG 58.800 45.455 14.54 4.07 33.08 2.90
293 294 2.028420 TTCATGAAGACGGCAGATGG 57.972 50.000 3.38 0.00 0.00 3.51
294 295 1.194218 TCATGAAGACGGCAGATGGA 58.806 50.000 0.00 0.00 0.00 3.41
295 296 1.137675 TCATGAAGACGGCAGATGGAG 59.862 52.381 0.00 0.00 0.00 3.86
296 297 0.467384 ATGAAGACGGCAGATGGAGG 59.533 55.000 0.00 0.00 0.00 4.30
297 298 0.614697 TGAAGACGGCAGATGGAGGA 60.615 55.000 0.00 0.00 0.00 3.71
298 299 0.179097 GAAGACGGCAGATGGAGGAC 60.179 60.000 0.00 0.00 0.00 3.85
299 300 1.949847 AAGACGGCAGATGGAGGACG 61.950 60.000 0.00 0.00 0.00 4.79
300 301 2.680352 ACGGCAGATGGAGGACGT 60.680 61.111 0.00 0.00 0.00 4.34
301 302 2.227089 GACGGCAGATGGAGGACGTT 62.227 60.000 0.00 0.00 34.43 3.99
302 303 1.811266 CGGCAGATGGAGGACGTTG 60.811 63.158 0.00 0.00 0.00 4.10
303 304 1.296715 GGCAGATGGAGGACGTTGT 59.703 57.895 0.00 0.00 0.00 3.32
304 305 0.741221 GGCAGATGGAGGACGTTGTC 60.741 60.000 0.00 0.00 0.00 3.18
305 306 1.078759 GCAGATGGAGGACGTTGTCG 61.079 60.000 0.00 0.00 43.34 4.35
306 307 1.078759 CAGATGGAGGACGTTGTCGC 61.079 60.000 0.00 0.00 41.18 5.19
307 308 1.215647 GATGGAGGACGTTGTCGCT 59.784 57.895 0.00 0.00 41.18 4.93
308 309 1.078759 GATGGAGGACGTTGTCGCTG 61.079 60.000 0.00 0.00 41.18 5.18
309 310 1.532604 ATGGAGGACGTTGTCGCTGA 61.533 55.000 0.00 0.00 41.18 4.26
310 311 1.215647 GGAGGACGTTGTCGCTGAT 59.784 57.895 0.00 0.00 41.18 2.90
311 312 1.078759 GGAGGACGTTGTCGCTGATG 61.079 60.000 0.00 0.00 41.18 3.07
312 313 1.687494 GAGGACGTTGTCGCTGATGC 61.687 60.000 0.00 0.00 41.18 3.91
313 314 2.027073 GGACGTTGTCGCTGATGCA 61.027 57.895 0.00 0.00 41.18 3.96
314 315 1.417592 GACGTTGTCGCTGATGCAG 59.582 57.895 0.00 0.00 41.18 4.41
315 316 1.006220 ACGTTGTCGCTGATGCAGA 60.006 52.632 0.00 0.00 41.18 4.26
316 317 0.599991 ACGTTGTCGCTGATGCAGAA 60.600 50.000 0.00 0.00 41.18 3.02
317 318 0.723414 CGTTGTCGCTGATGCAGAAT 59.277 50.000 0.00 0.00 39.64 2.40
318 319 1.926510 CGTTGTCGCTGATGCAGAATA 59.073 47.619 0.00 0.00 39.64 1.75
319 320 2.541346 CGTTGTCGCTGATGCAGAATAT 59.459 45.455 0.00 0.00 39.64 1.28
320 321 3.735746 CGTTGTCGCTGATGCAGAATATA 59.264 43.478 0.00 0.00 39.64 0.86
321 322 4.209080 CGTTGTCGCTGATGCAGAATATAA 59.791 41.667 0.00 0.00 39.64 0.98
322 323 5.276820 CGTTGTCGCTGATGCAGAATATAAA 60.277 40.000 0.00 0.00 39.64 1.40
323 324 5.912360 TGTCGCTGATGCAGAATATAAAG 57.088 39.130 0.00 0.00 39.64 1.85
324 325 4.751600 TGTCGCTGATGCAGAATATAAAGG 59.248 41.667 0.00 0.00 39.64 3.11
325 326 4.991056 GTCGCTGATGCAGAATATAAAGGA 59.009 41.667 0.00 0.00 39.64 3.36
326 327 5.466728 GTCGCTGATGCAGAATATAAAGGAA 59.533 40.000 0.00 0.00 39.64 3.36
327 328 5.698089 TCGCTGATGCAGAATATAAAGGAAG 59.302 40.000 0.00 0.00 39.64 3.46
328 329 5.468072 CGCTGATGCAGAATATAAAGGAAGT 59.532 40.000 0.00 0.00 39.64 3.01
329 330 6.565435 CGCTGATGCAGAATATAAAGGAAGTG 60.565 42.308 0.00 0.00 39.64 3.16
330 331 6.293845 GCTGATGCAGAATATAAAGGAAGTGG 60.294 42.308 0.00 0.00 39.41 4.00
331 332 6.899089 TGATGCAGAATATAAAGGAAGTGGA 58.101 36.000 0.00 0.00 0.00 4.02
332 333 6.767902 TGATGCAGAATATAAAGGAAGTGGAC 59.232 38.462 0.00 0.00 0.00 4.02
333 334 5.116180 TGCAGAATATAAAGGAAGTGGACG 58.884 41.667 0.00 0.00 0.00 4.79
334 335 5.105106 TGCAGAATATAAAGGAAGTGGACGA 60.105 40.000 0.00 0.00 0.00 4.20
335 336 5.234543 GCAGAATATAAAGGAAGTGGACGAC 59.765 44.000 0.00 0.00 0.00 4.34
336 337 5.459107 CAGAATATAAAGGAAGTGGACGACG 59.541 44.000 0.00 0.00 0.00 5.12
337 338 5.359009 AGAATATAAAGGAAGTGGACGACGA 59.641 40.000 0.00 0.00 0.00 4.20
338 339 2.712057 TAAAGGAAGTGGACGACGAC 57.288 50.000 0.00 0.00 0.00 4.34
339 340 0.318445 AAAGGAAGTGGACGACGACG 60.318 55.000 5.58 5.58 45.75 5.12
340 341 1.168407 AAGGAAGTGGACGACGACGA 61.168 55.000 15.32 0.00 42.66 4.20
341 342 1.441682 GGAAGTGGACGACGACGAC 60.442 63.158 15.32 7.84 42.66 4.34
347 348 2.635899 GACGACGACGACCACTGT 59.364 61.111 15.32 0.00 42.66 3.55
348 349 1.440023 GACGACGACGACCACTGTC 60.440 63.158 15.32 0.00 42.66 3.51
357 358 3.347411 GACCACTGTCGTAGGATGC 57.653 57.895 0.00 0.00 0.00 3.91
358 359 0.818296 GACCACTGTCGTAGGATGCT 59.182 55.000 0.00 0.00 0.00 3.79
359 360 0.532573 ACCACTGTCGTAGGATGCTG 59.467 55.000 0.00 0.00 0.00 4.41
360 361 0.179100 CCACTGTCGTAGGATGCTGG 60.179 60.000 0.00 0.00 0.00 4.85
361 362 0.817654 CACTGTCGTAGGATGCTGGA 59.182 55.000 0.00 0.00 0.00 3.86
362 363 1.204704 CACTGTCGTAGGATGCTGGAA 59.795 52.381 0.00 0.00 0.00 3.53
363 364 1.204941 ACTGTCGTAGGATGCTGGAAC 59.795 52.381 0.00 0.00 0.00 3.62
364 365 1.204704 CTGTCGTAGGATGCTGGAACA 59.795 52.381 0.00 0.00 0.00 3.18
365 366 1.067142 TGTCGTAGGATGCTGGAACAC 60.067 52.381 0.00 0.00 0.00 3.32
366 367 1.204941 GTCGTAGGATGCTGGAACACT 59.795 52.381 0.00 0.00 0.00 3.55
367 368 1.476891 TCGTAGGATGCTGGAACACTC 59.523 52.381 0.00 0.00 0.00 3.51
368 369 1.478510 CGTAGGATGCTGGAACACTCT 59.521 52.381 0.00 0.00 0.00 3.24
369 370 2.093973 CGTAGGATGCTGGAACACTCTT 60.094 50.000 0.00 0.00 0.00 2.85
370 371 3.617531 CGTAGGATGCTGGAACACTCTTT 60.618 47.826 0.00 0.00 0.00 2.52
371 372 3.064900 AGGATGCTGGAACACTCTTTC 57.935 47.619 0.00 0.00 0.00 2.62
372 373 2.641815 AGGATGCTGGAACACTCTTTCT 59.358 45.455 0.00 0.00 0.00 2.52
414 415 5.549742 AATGAAAAATCTCCCTGTTTGCA 57.450 34.783 0.00 0.00 0.00 4.08
419 420 5.750352 AAAATCTCCCTGTTTGCATGAAT 57.250 34.783 0.00 0.00 0.00 2.57
426 427 3.129988 CCCTGTTTGCATGAATCTCTTCC 59.870 47.826 0.00 0.00 0.00 3.46
427 428 3.760151 CCTGTTTGCATGAATCTCTTCCA 59.240 43.478 0.00 0.00 0.00 3.53
428 429 4.142447 CCTGTTTGCATGAATCTCTTCCAG 60.142 45.833 0.00 0.00 0.00 3.86
455 456 9.866798 TTTATATGAAAATATGCTGTGTTTGCA 57.133 25.926 0.00 0.00 44.95 4.08
461 464 8.404000 TGAAAATATGCTGTGTTTGCAAATTTT 58.596 25.926 16.21 13.57 44.01 1.82
465 468 4.252073 TGCTGTGTTTGCAAATTTTGTCT 58.748 34.783 16.21 0.00 37.51 3.41
472 475 6.312672 GTGTTTGCAAATTTTGTCTGGTTAGT 59.687 34.615 16.21 0.00 0.00 2.24
496 499 8.474025 AGTTGAAAAGGTGTTTGAAATGTATGA 58.526 29.630 0.00 0.00 0.00 2.15
497 500 8.755018 GTTGAAAAGGTGTTTGAAATGTATGAG 58.245 33.333 0.00 0.00 0.00 2.90
499 502 7.286546 TGAAAAGGTGTTTGAAATGTATGAGGA 59.713 33.333 0.00 0.00 0.00 3.71
502 505 6.068010 AGGTGTTTGAAATGTATGAGGACAA 58.932 36.000 0.00 0.00 31.83 3.18
503 506 6.721208 AGGTGTTTGAAATGTATGAGGACAAT 59.279 34.615 0.00 0.00 31.83 2.71
505 508 6.308766 GTGTTTGAAATGTATGAGGACAATGC 59.691 38.462 0.00 0.00 31.83 3.56
507 510 6.839124 TTGAAATGTATGAGGACAATGCTT 57.161 33.333 0.00 0.00 31.83 3.91
512 515 5.101648 TGTATGAGGACAATGCTTGATGA 57.898 39.130 3.37 0.00 0.00 2.92
519 532 3.876914 GGACAATGCTTGATGAATCCGTA 59.123 43.478 3.37 0.00 0.00 4.02
521 534 5.334414 GGACAATGCTTGATGAATCCGTATC 60.334 44.000 3.37 0.00 0.00 2.24
554 568 0.812811 CAGTCCATGGACAGATGCCG 60.813 60.000 39.38 18.37 46.76 5.69
579 593 3.737266 GCAAATATGCGGATCAACATTGG 59.263 43.478 0.00 0.00 43.83 3.16
580 594 4.300803 CAAATATGCGGATCAACATTGGG 58.699 43.478 0.00 0.00 0.00 4.12
593 620 0.107410 CATTGGGGTGCTTAGGCGTA 60.107 55.000 0.00 0.00 42.25 4.42
594 621 0.180406 ATTGGGGTGCTTAGGCGTAG 59.820 55.000 0.00 0.00 42.25 3.51
714 741 9.058174 ACATGAAATTGCAATCATTTTTCTTGA 57.942 25.926 27.64 10.13 35.80 3.02
719 746 8.780846 AATTGCAATCATTTTTCTTGAGCATA 57.219 26.923 13.38 0.00 28.34 3.14
720 747 8.958119 ATTGCAATCATTTTTCTTGAGCATAT 57.042 26.923 5.99 0.00 28.34 1.78
893 941 1.221566 CGACAGGCACATCCATCCA 59.778 57.895 0.00 0.00 37.29 3.41
894 942 0.812811 CGACAGGCACATCCATCCAG 60.813 60.000 0.00 0.00 37.29 3.86
1032 1100 0.326595 TCGCATTTGCCCACCTTCTA 59.673 50.000 0.00 0.00 37.91 2.10
1056 1124 2.214216 CCTCGTCTTGGTGTCCCCA 61.214 63.158 0.00 0.00 43.27 4.96
1084 1152 0.948678 CTACTCTGCTAGTCCCTCGC 59.051 60.000 0.00 0.00 39.80 5.03
1137 1205 3.765257 CTCCCTCCTGCCTCCCGAT 62.765 68.421 0.00 0.00 0.00 4.18
1152 1232 2.589540 GATGCCACCATCACCGGA 59.410 61.111 9.46 0.00 45.75 5.14
1204 1293 2.659016 CTGAGCTTGCTGACGGGA 59.341 61.111 0.00 0.00 0.00 5.14
1228 1317 2.593148 ACATTGCGGCCGTCAACA 60.593 55.556 28.72 16.58 0.00 3.33
1380 1496 3.127533 GGCGAGCGGTTCATGCTT 61.128 61.111 0.00 0.00 44.18 3.91
1411 1527 0.454600 CTTCGCCGCCTTGACTACTA 59.545 55.000 0.00 0.00 0.00 1.82
1418 1540 1.736032 CGCCTTGACTACTACTGGTGC 60.736 57.143 0.00 0.00 0.00 5.01
1470 1610 2.037772 CAGGAGGATACCTTGCGCTTAT 59.962 50.000 9.73 0.00 38.32 1.73
1609 1755 1.976474 GCGGAAATTCCTGGTGCCA 60.976 57.895 10.64 0.00 33.30 4.92
1610 1756 1.883021 CGGAAATTCCTGGTGCCAC 59.117 57.895 10.64 0.00 33.30 5.01
1611 1757 0.609131 CGGAAATTCCTGGTGCCACT 60.609 55.000 10.64 0.00 33.30 4.00
1612 1758 0.890683 GGAAATTCCTGGTGCCACTG 59.109 55.000 4.46 0.00 32.53 3.66
1613 1759 0.244721 GAAATTCCTGGTGCCACTGC 59.755 55.000 0.00 0.00 38.26 4.40
1614 1760 1.187567 AAATTCCTGGTGCCACTGCC 61.188 55.000 0.00 0.00 36.33 4.85
1903 2055 2.438795 GAGACGGCGAGGAGGAGT 60.439 66.667 16.62 0.00 0.00 3.85
2046 2217 7.909121 GCATATACACCGTACACTACAGATATC 59.091 40.741 0.00 0.00 0.00 1.63
2573 2747 5.335028 TGTAGTGGGCTATACATAGAGGT 57.665 43.478 0.30 0.00 32.05 3.85
2582 2756 6.448006 GGCTATACATAGAGGTACACACTTG 58.552 44.000 0.30 0.00 32.05 3.16
2586 2760 5.906113 ACATAGAGGTACACACTTGAGAG 57.094 43.478 0.00 0.00 0.00 3.20
2587 2761 5.326069 ACATAGAGGTACACACTTGAGAGT 58.674 41.667 0.00 0.00 36.25 3.24
2588 2762 5.775701 ACATAGAGGTACACACTTGAGAGTT 59.224 40.000 0.00 0.00 32.54 3.01
2589 2763 4.592485 AGAGGTACACACTTGAGAGTTG 57.408 45.455 0.00 0.00 32.54 3.16
2590 2764 4.215908 AGAGGTACACACTTGAGAGTTGA 58.784 43.478 0.00 0.00 32.54 3.18
2591 2765 4.279671 AGAGGTACACACTTGAGAGTTGAG 59.720 45.833 0.00 0.00 32.54 3.02
2592 2766 4.215908 AGGTACACACTTGAGAGTTGAGA 58.784 43.478 0.00 0.00 32.54 3.27
2593 2767 4.038162 AGGTACACACTTGAGAGTTGAGAC 59.962 45.833 0.00 0.00 32.54 3.36
2627 2801 5.994054 GTCATTGTACTCATGCATGGACTAT 59.006 40.000 25.97 18.63 0.00 2.12
2640 2817 4.562347 GCATGGACTATATGAGTGTGAGGG 60.562 50.000 0.00 0.00 39.06 4.30
2644 2821 4.279671 GGACTATATGAGTGTGAGGGTGAG 59.720 50.000 0.00 0.00 39.06 3.51
2670 2847 4.715713 TCGGCAGCTAGTCTAATCTCTAA 58.284 43.478 0.00 0.00 0.00 2.10
2693 2870 6.968263 ATGTCTCATCATAGGTATATCCCG 57.032 41.667 0.00 0.00 36.75 5.14
2733 2910 1.202336 GGAATTTGGAGATGCCTTGCG 60.202 52.381 0.00 0.00 37.63 4.85
2734 2911 1.474077 GAATTTGGAGATGCCTTGCGT 59.526 47.619 0.00 0.00 37.63 5.24
2735 2912 1.098050 ATTTGGAGATGCCTTGCGTC 58.902 50.000 0.01 0.01 44.07 5.19
2743 2920 4.481112 GCCTTGCGTCGGCCATTG 62.481 66.667 2.24 0.00 41.73 2.82
2744 2921 3.055719 CCTTGCGTCGGCCATTGT 61.056 61.111 2.24 0.00 38.85 2.71
2745 2922 2.625823 CCTTGCGTCGGCCATTGTT 61.626 57.895 2.24 0.00 38.85 2.83
2746 2923 1.442520 CTTGCGTCGGCCATTGTTG 60.443 57.895 2.24 0.00 38.85 3.33
2747 2924 1.851021 CTTGCGTCGGCCATTGTTGA 61.851 55.000 2.24 0.00 38.85 3.18
2748 2925 1.240641 TTGCGTCGGCCATTGTTGAT 61.241 50.000 2.24 0.00 38.85 2.57
2749 2926 1.226379 GCGTCGGCCATTGTTGATG 60.226 57.895 2.24 0.00 35.42 3.07
2750 2927 1.922135 GCGTCGGCCATTGTTGATGT 61.922 55.000 2.24 0.00 33.71 3.06
2751 2928 0.521291 CGTCGGCCATTGTTGATGTT 59.479 50.000 2.24 0.00 33.71 2.71
2752 2929 1.068610 CGTCGGCCATTGTTGATGTTT 60.069 47.619 2.24 0.00 33.71 2.83
2753 2930 2.595386 GTCGGCCATTGTTGATGTTTC 58.405 47.619 2.24 0.00 33.71 2.78
2754 2931 2.228822 GTCGGCCATTGTTGATGTTTCT 59.771 45.455 2.24 0.00 33.71 2.52
2755 2932 2.487762 TCGGCCATTGTTGATGTTTCTC 59.512 45.455 2.24 0.00 33.71 2.87
2756 2933 2.489329 CGGCCATTGTTGATGTTTCTCT 59.511 45.455 2.24 0.00 33.71 3.10
2757 2934 3.689161 CGGCCATTGTTGATGTTTCTCTA 59.311 43.478 2.24 0.00 33.71 2.43
2758 2935 4.336433 CGGCCATTGTTGATGTTTCTCTAT 59.664 41.667 2.24 0.00 33.71 1.98
2759 2936 5.163622 CGGCCATTGTTGATGTTTCTCTATT 60.164 40.000 2.24 0.00 33.71 1.73
2760 2937 6.038356 GGCCATTGTTGATGTTTCTCTATTG 58.962 40.000 0.00 0.00 33.71 1.90
2761 2938 6.127647 GGCCATTGTTGATGTTTCTCTATTGA 60.128 38.462 0.00 0.00 33.71 2.57
2762 2939 7.315142 GCCATTGTTGATGTTTCTCTATTGAA 58.685 34.615 0.00 0.00 33.71 2.69
2763 2940 7.977853 GCCATTGTTGATGTTTCTCTATTGAAT 59.022 33.333 0.00 0.00 33.71 2.57
2764 2941 9.865321 CCATTGTTGATGTTTCTCTATTGAATT 57.135 29.630 0.00 0.00 33.71 2.17
2767 2944 9.695526 TTGTTGATGTTTCTCTATTGAATTTGG 57.304 29.630 0.00 0.00 0.00 3.28
2768 2945 9.076781 TGTTGATGTTTCTCTATTGAATTTGGA 57.923 29.630 0.00 0.00 0.00 3.53
2769 2946 9.565213 GTTGATGTTTCTCTATTGAATTTGGAG 57.435 33.333 0.00 0.00 0.00 3.86
2770 2947 9.519191 TTGATGTTTCTCTATTGAATTTGGAGA 57.481 29.630 0.00 0.00 0.00 3.71
2771 2948 8.950210 TGATGTTTCTCTATTGAATTTGGAGAC 58.050 33.333 5.24 0.00 33.54 3.36
2772 2949 8.868522 ATGTTTCTCTATTGAATTTGGAGACA 57.131 30.769 5.24 0.00 33.54 3.41
2773 2950 8.099364 TGTTTCTCTATTGAATTTGGAGACAC 57.901 34.615 11.29 11.29 42.67 3.67
2774 2951 7.939039 TGTTTCTCTATTGAATTTGGAGACACT 59.061 33.333 15.49 0.00 42.67 3.55
2775 2952 8.787852 GTTTCTCTATTGAATTTGGAGACACTT 58.212 33.333 11.09 0.00 42.67 3.16
2778 2955 9.823647 TCTCTATTGAATTTGGAGACACTTATC 57.176 33.333 0.00 0.00 42.67 1.75
2779 2956 9.605275 CTCTATTGAATTTGGAGACACTTATCA 57.395 33.333 0.00 0.00 42.67 2.15
2780 2957 9.958180 TCTATTGAATTTGGAGACACTTATCAA 57.042 29.630 0.00 0.00 42.67 2.57
2782 2959 6.500684 TGAATTTGGAGACACTTATCAAGC 57.499 37.500 0.00 0.00 42.67 4.01
2783 2960 5.122239 TGAATTTGGAGACACTTATCAAGCG 59.878 40.000 0.00 0.00 42.67 4.68
2784 2961 3.678056 TTGGAGACACTTATCAAGCGT 57.322 42.857 0.00 0.00 42.67 5.07
2785 2962 2.959516 TGGAGACACTTATCAAGCGTG 58.040 47.619 0.00 0.00 33.40 5.34
2786 2963 2.299013 TGGAGACACTTATCAAGCGTGT 59.701 45.455 0.00 0.00 43.89 4.49
2787 2964 3.244078 TGGAGACACTTATCAAGCGTGTT 60.244 43.478 0.00 0.00 41.53 3.32
2788 2965 3.746492 GGAGACACTTATCAAGCGTGTTT 59.254 43.478 0.00 0.00 41.53 2.83
2789 2966 4.213482 GGAGACACTTATCAAGCGTGTTTT 59.787 41.667 0.00 0.00 41.53 2.43
2790 2967 5.277828 GGAGACACTTATCAAGCGTGTTTTT 60.278 40.000 0.00 0.00 41.53 1.94
2833 3010 4.580167 ACTTATCAAGTGTGTTGTGTGCAT 59.420 37.500 0.00 0.00 41.01 3.96
2834 3011 5.067674 ACTTATCAAGTGTGTTGTGTGCATT 59.932 36.000 0.00 0.00 41.01 3.56
2835 3012 3.148026 TCAAGTGTGTTGTGTGCATTG 57.852 42.857 0.00 0.00 0.00 2.82
2836 3013 1.589320 CAAGTGTGTTGTGTGCATTGC 59.411 47.619 0.46 0.46 0.00 3.56
2837 3014 0.816373 AGTGTGTTGTGTGCATTGCA 59.184 45.000 7.38 7.38 35.60 4.08
2838 3015 1.409790 AGTGTGTTGTGTGCATTGCAT 59.590 42.857 15.49 0.00 41.91 3.96
2839 3016 2.622470 AGTGTGTTGTGTGCATTGCATA 59.378 40.909 15.49 9.58 41.91 3.14
2840 3017 3.067883 AGTGTGTTGTGTGCATTGCATAA 59.932 39.130 15.49 8.08 41.91 1.90
2841 3018 3.989167 GTGTGTTGTGTGCATTGCATAAT 59.011 39.130 15.49 0.00 41.91 1.28
2870 3047 4.037446 TGGCATTGTCTTACGCTTCTTTTT 59.963 37.500 0.00 0.00 0.00 1.94
2878 3055 1.963172 ACGCTTCTTTTTCCGTCCTT 58.037 45.000 0.00 0.00 0.00 3.36
2882 3059 2.484651 GCTTCTTTTTCCGTCCTTCCTC 59.515 50.000 0.00 0.00 0.00 3.71
2893 3070 0.956528 TCCTTCCTCCCCATCCCATA 59.043 55.000 0.00 0.00 0.00 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 1.366366 GACGGGTACACACAGCTGT 59.634 57.895 15.25 15.25 38.20 4.40
33 34 2.165301 CCGAAAGATGGACGGCGAC 61.165 63.158 16.62 7.58 40.19 5.19
34 35 2.183300 CCGAAAGATGGACGGCGA 59.817 61.111 16.62 0.00 40.19 5.54
36 37 2.513897 CCCCGAAAGATGGACGGC 60.514 66.667 0.00 0.00 44.45 5.68
40 41 2.287274 TGCGACCCCGAAAGATGGA 61.287 57.895 0.00 0.00 38.22 3.41
42 43 2.452813 CGTGCGACCCCGAAAGATG 61.453 63.158 0.00 0.00 38.22 2.90
43 44 2.125673 CGTGCGACCCCGAAAGAT 60.126 61.111 0.00 0.00 38.22 2.40
44 45 3.608662 ACGTGCGACCCCGAAAGA 61.609 61.111 0.00 0.00 38.22 2.52
46 47 4.973055 CCACGTGCGACCCCGAAA 62.973 66.667 10.91 0.00 38.22 3.46
102 103 3.927163 GACGCCGGTGGACGTGATT 62.927 63.158 21.14 0.00 43.71 2.57
103 104 4.430765 GACGCCGGTGGACGTGAT 62.431 66.667 21.14 0.00 43.71 3.06
119 120 2.338620 CGACCTGTCCGTTGCTGA 59.661 61.111 0.00 0.00 0.00 4.26
120 121 3.414700 GCGACCTGTCCGTTGCTG 61.415 66.667 0.00 0.00 39.64 4.41
124 125 2.143594 GAGTCTGCGACCTGTCCGTT 62.144 60.000 5.29 0.00 32.18 4.44
126 127 2.179517 GAGTCTGCGACCTGTCCG 59.820 66.667 5.29 0.00 32.18 4.79
132 133 0.603569 TCTCAAAGGAGTCTGCGACC 59.396 55.000 5.29 0.00 42.05 4.79
136 137 2.290577 ACCCATTCTCAAAGGAGTCTGC 60.291 50.000 0.00 0.00 42.05 4.26
138 139 3.777522 CCTACCCATTCTCAAAGGAGTCT 59.222 47.826 0.00 0.00 42.05 3.24
146 147 1.410083 GCATGCCCTACCCATTCTCAA 60.410 52.381 6.36 0.00 0.00 3.02
147 148 0.183492 GCATGCCCTACCCATTCTCA 59.817 55.000 6.36 0.00 0.00 3.27
148 149 0.886490 CGCATGCCCTACCCATTCTC 60.886 60.000 13.15 0.00 0.00 2.87
151 152 1.149174 CTCGCATGCCCTACCCATT 59.851 57.895 13.15 0.00 0.00 3.16
170 171 3.660111 GACACAACACCCTGCCGC 61.660 66.667 0.00 0.00 0.00 6.53
171 172 2.978010 GGACACAACACCCTGCCG 60.978 66.667 0.00 0.00 0.00 5.69
172 173 2.597510 GGGACACAACACCCTGCC 60.598 66.667 0.00 0.00 42.56 4.85
176 177 1.106944 CCACTTGGGACACAACACCC 61.107 60.000 0.00 0.00 45.74 4.61
197 198 0.108138 GAACATGGGAGACGGACAGG 60.108 60.000 0.00 0.00 0.00 4.00
199 200 1.822990 GTAGAACATGGGAGACGGACA 59.177 52.381 0.00 0.00 0.00 4.02
204 205 4.098807 GGAGAAGAGTAGAACATGGGAGAC 59.901 50.000 0.00 0.00 0.00 3.36
209 210 3.429547 CGGTGGAGAAGAGTAGAACATGG 60.430 52.174 0.00 0.00 0.00 3.66
225 226 2.920912 GGTGTGGTCTCCGGTGGA 60.921 66.667 0.00 0.00 0.00 4.02
226 227 2.923035 AGGTGTGGTCTCCGGTGG 60.923 66.667 0.00 0.00 33.02 4.61
227 228 2.657237 GAGGTGTGGTCTCCGGTG 59.343 66.667 0.00 0.00 33.02 4.94
228 229 2.603776 GGAGGTGTGGTCTCCGGT 60.604 66.667 0.00 0.00 41.01 5.28
232 233 1.048601 TGAAGTGGAGGTGTGGTCTC 58.951 55.000 0.00 0.00 0.00 3.36
233 234 0.759346 GTGAAGTGGAGGTGTGGTCT 59.241 55.000 0.00 0.00 0.00 3.85
234 235 0.600255 CGTGAAGTGGAGGTGTGGTC 60.600 60.000 0.00 0.00 0.00 4.02
235 236 1.445942 CGTGAAGTGGAGGTGTGGT 59.554 57.895 0.00 0.00 0.00 4.16
236 237 1.301716 CCGTGAAGTGGAGGTGTGG 60.302 63.158 0.00 0.00 0.00 4.17
237 238 1.301716 CCCGTGAAGTGGAGGTGTG 60.302 63.158 0.00 0.00 0.00 3.82
238 239 1.755393 GACCCGTGAAGTGGAGGTGT 61.755 60.000 0.00 0.00 0.00 4.16
239 240 1.004918 GACCCGTGAAGTGGAGGTG 60.005 63.158 0.00 0.00 0.00 4.00
240 241 0.763223 AAGACCCGTGAAGTGGAGGT 60.763 55.000 0.00 0.00 0.00 3.85
241 242 0.320771 CAAGACCCGTGAAGTGGAGG 60.321 60.000 0.00 0.00 0.00 4.30
242 243 0.679505 TCAAGACCCGTGAAGTGGAG 59.320 55.000 0.00 0.00 0.00 3.86
243 244 1.124780 TTCAAGACCCGTGAAGTGGA 58.875 50.000 0.00 0.00 31.45 4.02
244 245 1.226746 GTTCAAGACCCGTGAAGTGG 58.773 55.000 0.00 0.00 35.71 4.00
245 246 1.226746 GGTTCAAGACCCGTGAAGTG 58.773 55.000 0.00 0.00 43.06 3.16
246 247 3.700198 GGTTCAAGACCCGTGAAGT 57.300 52.632 0.00 0.00 43.06 3.01
255 256 3.282885 GAATGATGGAGGGGTTCAAGAC 58.717 50.000 0.00 0.00 0.00 3.01
256 257 2.918934 TGAATGATGGAGGGGTTCAAGA 59.081 45.455 0.00 0.00 0.00 3.02
257 258 3.370840 TGAATGATGGAGGGGTTCAAG 57.629 47.619 0.00 0.00 0.00 3.02
258 259 3.269118 TCATGAATGATGGAGGGGTTCAA 59.731 43.478 0.00 0.00 33.12 2.69
259 260 2.851821 TCATGAATGATGGAGGGGTTCA 59.148 45.455 0.00 0.00 33.82 3.18
260 261 3.582998 TCATGAATGATGGAGGGGTTC 57.417 47.619 0.00 0.00 32.26 3.62
261 262 3.528905 TCTTCATGAATGATGGAGGGGTT 59.471 43.478 8.96 0.00 38.17 4.11
262 263 3.117738 GTCTTCATGAATGATGGAGGGGT 60.118 47.826 8.96 0.00 38.17 4.95
263 264 3.484407 GTCTTCATGAATGATGGAGGGG 58.516 50.000 8.96 0.00 38.17 4.79
264 265 3.136763 CGTCTTCATGAATGATGGAGGG 58.863 50.000 8.96 0.00 38.17 4.30
265 266 3.136763 CCGTCTTCATGAATGATGGAGG 58.863 50.000 26.19 17.63 38.17 4.30
266 267 2.547211 GCCGTCTTCATGAATGATGGAG 59.453 50.000 30.38 13.52 38.92 3.86
267 268 2.093021 TGCCGTCTTCATGAATGATGGA 60.093 45.455 30.38 20.21 38.73 3.41
268 269 2.289820 CTGCCGTCTTCATGAATGATGG 59.710 50.000 26.08 26.08 39.26 3.51
269 270 3.200483 TCTGCCGTCTTCATGAATGATG 58.800 45.455 8.96 12.90 36.56 3.07
270 271 3.548745 TCTGCCGTCTTCATGAATGAT 57.451 42.857 8.96 0.00 36.56 2.45
271 272 3.200483 CATCTGCCGTCTTCATGAATGA 58.800 45.455 8.96 6.08 34.44 2.57
272 273 2.289820 CCATCTGCCGTCTTCATGAATG 59.710 50.000 8.96 3.70 0.00 2.67
273 274 2.171237 TCCATCTGCCGTCTTCATGAAT 59.829 45.455 8.96 0.00 0.00 2.57
274 275 1.554617 TCCATCTGCCGTCTTCATGAA 59.445 47.619 8.12 8.12 0.00 2.57
275 276 1.137675 CTCCATCTGCCGTCTTCATGA 59.862 52.381 0.00 0.00 0.00 3.07
276 277 1.579698 CTCCATCTGCCGTCTTCATG 58.420 55.000 0.00 0.00 0.00 3.07
277 278 0.467384 CCTCCATCTGCCGTCTTCAT 59.533 55.000 0.00 0.00 0.00 2.57
278 279 0.614697 TCCTCCATCTGCCGTCTTCA 60.615 55.000 0.00 0.00 0.00 3.02
279 280 0.179097 GTCCTCCATCTGCCGTCTTC 60.179 60.000 0.00 0.00 0.00 2.87
280 281 1.901085 GTCCTCCATCTGCCGTCTT 59.099 57.895 0.00 0.00 0.00 3.01
281 282 2.418910 CGTCCTCCATCTGCCGTCT 61.419 63.158 0.00 0.00 0.00 4.18
282 283 2.105128 CGTCCTCCATCTGCCGTC 59.895 66.667 0.00 0.00 0.00 4.79
283 284 2.283529 AACGTCCTCCATCTGCCGT 61.284 57.895 0.00 0.00 0.00 5.68
284 285 1.811266 CAACGTCCTCCATCTGCCG 60.811 63.158 0.00 0.00 0.00 5.69
285 286 0.741221 GACAACGTCCTCCATCTGCC 60.741 60.000 0.00 0.00 0.00 4.85
286 287 1.078759 CGACAACGTCCTCCATCTGC 61.079 60.000 0.00 0.00 34.56 4.26
287 288 1.078759 GCGACAACGTCCTCCATCTG 61.079 60.000 0.00 0.00 41.98 2.90
288 289 1.215647 GCGACAACGTCCTCCATCT 59.784 57.895 0.00 0.00 41.98 2.90
289 290 1.078759 CAGCGACAACGTCCTCCATC 61.079 60.000 0.00 0.00 41.98 3.51
290 291 1.079819 CAGCGACAACGTCCTCCAT 60.080 57.895 0.00 0.00 41.98 3.41
291 292 1.532604 ATCAGCGACAACGTCCTCCA 61.533 55.000 0.00 0.00 41.98 3.86
292 293 1.078759 CATCAGCGACAACGTCCTCC 61.079 60.000 0.00 0.00 41.98 4.30
293 294 1.687494 GCATCAGCGACAACGTCCTC 61.687 60.000 0.00 0.00 41.98 3.71
294 295 1.738099 GCATCAGCGACAACGTCCT 60.738 57.895 0.00 0.00 41.98 3.85
295 296 1.959899 CTGCATCAGCGACAACGTCC 61.960 60.000 0.00 0.00 46.23 4.79
296 297 1.008875 TCTGCATCAGCGACAACGTC 61.009 55.000 0.00 0.00 46.23 4.34
297 298 0.599991 TTCTGCATCAGCGACAACGT 60.600 50.000 0.00 0.00 46.23 3.99
298 299 0.723414 ATTCTGCATCAGCGACAACG 59.277 50.000 0.00 0.00 46.23 4.10
299 300 5.657470 TTATATTCTGCATCAGCGACAAC 57.343 39.130 0.00 0.00 46.23 3.32
300 301 5.237127 CCTTTATATTCTGCATCAGCGACAA 59.763 40.000 0.00 0.00 46.23 3.18
301 302 4.751600 CCTTTATATTCTGCATCAGCGACA 59.248 41.667 0.00 0.00 46.23 4.35
302 303 4.991056 TCCTTTATATTCTGCATCAGCGAC 59.009 41.667 0.00 0.00 46.23 5.19
303 304 5.213891 TCCTTTATATTCTGCATCAGCGA 57.786 39.130 0.00 0.00 46.23 4.93
304 305 5.468072 ACTTCCTTTATATTCTGCATCAGCG 59.532 40.000 0.00 0.00 46.23 5.18
305 306 6.293845 CCACTTCCTTTATATTCTGCATCAGC 60.294 42.308 0.00 0.00 42.57 4.26
306 307 6.994496 TCCACTTCCTTTATATTCTGCATCAG 59.006 38.462 0.00 0.00 0.00 2.90
307 308 6.767902 GTCCACTTCCTTTATATTCTGCATCA 59.232 38.462 0.00 0.00 0.00 3.07
308 309 6.073548 CGTCCACTTCCTTTATATTCTGCATC 60.074 42.308 0.00 0.00 0.00 3.91
309 310 5.760253 CGTCCACTTCCTTTATATTCTGCAT 59.240 40.000 0.00 0.00 0.00 3.96
310 311 5.105106 TCGTCCACTTCCTTTATATTCTGCA 60.105 40.000 0.00 0.00 0.00 4.41
311 312 5.234543 GTCGTCCACTTCCTTTATATTCTGC 59.765 44.000 0.00 0.00 0.00 4.26
312 313 5.459107 CGTCGTCCACTTCCTTTATATTCTG 59.541 44.000 0.00 0.00 0.00 3.02
313 314 5.359009 TCGTCGTCCACTTCCTTTATATTCT 59.641 40.000 0.00 0.00 0.00 2.40
314 315 5.458126 GTCGTCGTCCACTTCCTTTATATTC 59.542 44.000 0.00 0.00 0.00 1.75
315 316 5.346522 GTCGTCGTCCACTTCCTTTATATT 58.653 41.667 0.00 0.00 0.00 1.28
316 317 4.497006 CGTCGTCGTCCACTTCCTTTATAT 60.497 45.833 0.00 0.00 0.00 0.86
317 318 3.181507 CGTCGTCGTCCACTTCCTTTATA 60.182 47.826 0.00 0.00 0.00 0.98
318 319 2.415090 CGTCGTCGTCCACTTCCTTTAT 60.415 50.000 0.00 0.00 0.00 1.40
319 320 1.069022 CGTCGTCGTCCACTTCCTTTA 60.069 52.381 0.00 0.00 0.00 1.85
320 321 0.318445 CGTCGTCGTCCACTTCCTTT 60.318 55.000 0.00 0.00 0.00 3.11
321 322 1.168407 TCGTCGTCGTCCACTTCCTT 61.168 55.000 1.33 0.00 38.33 3.36
322 323 1.598962 TCGTCGTCGTCCACTTCCT 60.599 57.895 1.33 0.00 38.33 3.36
323 324 1.441682 GTCGTCGTCGTCCACTTCC 60.442 63.158 1.33 0.00 38.33 3.46
324 325 1.441682 GGTCGTCGTCGTCCACTTC 60.442 63.158 12.61 0.00 42.84 3.01
325 326 2.188829 TGGTCGTCGTCGTCCACTT 61.189 57.895 15.66 0.00 46.42 3.16
326 327 2.592574 TGGTCGTCGTCGTCCACT 60.593 61.111 15.66 0.00 46.42 4.00
329 330 2.126965 CAGTGGTCGTCGTCGTCC 60.127 66.667 10.88 10.88 43.41 4.79
330 331 1.440023 GACAGTGGTCGTCGTCGTC 60.440 63.158 1.33 0.00 38.33 4.20
331 332 2.635899 GACAGTGGTCGTCGTCGT 59.364 61.111 1.33 0.00 38.33 4.34
339 340 0.818296 AGCATCCTACGACAGTGGTC 59.182 55.000 0.00 0.00 40.77 4.02
340 341 0.532573 CAGCATCCTACGACAGTGGT 59.467 55.000 0.00 0.00 0.00 4.16
341 342 0.179100 CCAGCATCCTACGACAGTGG 60.179 60.000 0.00 0.00 0.00 4.00
342 343 0.817654 TCCAGCATCCTACGACAGTG 59.182 55.000 0.00 0.00 0.00 3.66
343 344 1.204941 GTTCCAGCATCCTACGACAGT 59.795 52.381 0.00 0.00 0.00 3.55
344 345 1.204704 TGTTCCAGCATCCTACGACAG 59.795 52.381 0.00 0.00 0.00 3.51
345 346 1.067142 GTGTTCCAGCATCCTACGACA 60.067 52.381 0.00 0.00 0.00 4.35
346 347 1.204941 AGTGTTCCAGCATCCTACGAC 59.795 52.381 0.00 0.00 0.00 4.34
347 348 1.476891 GAGTGTTCCAGCATCCTACGA 59.523 52.381 0.00 0.00 0.00 3.43
348 349 1.478510 AGAGTGTTCCAGCATCCTACG 59.521 52.381 0.00 0.00 0.00 3.51
349 350 3.618690 AAGAGTGTTCCAGCATCCTAC 57.381 47.619 0.00 0.00 0.00 3.18
350 351 3.840666 AGAAAGAGTGTTCCAGCATCCTA 59.159 43.478 0.00 0.00 0.00 2.94
351 352 2.641815 AGAAAGAGTGTTCCAGCATCCT 59.358 45.455 0.00 0.00 0.00 3.24
352 353 3.064900 AGAAAGAGTGTTCCAGCATCC 57.935 47.619 0.00 0.00 0.00 3.51
353 354 5.444663 AAAAGAAAGAGTGTTCCAGCATC 57.555 39.130 0.00 0.00 0.00 3.91
354 355 5.859205 AAAAAGAAAGAGTGTTCCAGCAT 57.141 34.783 0.00 0.00 0.00 3.79
390 391 7.243604 TGCAAACAGGGAGATTTTTCATTAT 57.756 32.000 0.00 0.00 0.00 1.28
400 401 4.079901 AGAGATTCATGCAAACAGGGAGAT 60.080 41.667 0.00 0.00 0.00 2.75
403 404 3.726557 AGAGATTCATGCAAACAGGGA 57.273 42.857 0.00 0.00 0.00 4.20
406 407 4.458295 ACTGGAAGAGATTCATGCAAACAG 59.542 41.667 0.00 0.00 37.43 3.16
439 440 7.227116 AGACAAAATTTGCAAACACAGCATATT 59.773 29.630 15.41 0.00 42.63 1.28
440 441 6.707161 AGACAAAATTTGCAAACACAGCATAT 59.293 30.769 15.41 0.00 42.33 1.78
442 443 4.877251 AGACAAAATTTGCAAACACAGCAT 59.123 33.333 15.41 0.00 42.33 3.79
446 447 4.573900 ACCAGACAAAATTTGCAAACACA 58.426 34.783 15.41 0.00 0.00 3.72
455 456 8.318412 ACCTTTTCAACTAACCAGACAAAATTT 58.682 29.630 0.00 0.00 0.00 1.82
461 464 4.850680 ACACCTTTTCAACTAACCAGACA 58.149 39.130 0.00 0.00 0.00 3.41
465 468 6.591750 TTCAAACACCTTTTCAACTAACCA 57.408 33.333 0.00 0.00 0.00 3.67
472 475 7.925483 CCTCATACATTTCAAACACCTTTTCAA 59.075 33.333 0.00 0.00 0.00 2.69
535 548 0.812811 CGGCATCTGTCCATGGACTG 60.813 60.000 37.92 36.11 44.80 3.51
536 549 1.524002 CGGCATCTGTCCATGGACT 59.476 57.895 37.92 20.91 44.80 3.85
541 555 2.369633 TGCTCCGGCATCTGTCCAT 61.370 57.895 0.00 0.00 44.28 3.41
563 577 0.033208 ACCCCAATGTTGATCCGCAT 60.033 50.000 0.00 0.00 0.00 4.73
569 583 2.738743 CCTAAGCACCCCAATGTTGAT 58.261 47.619 0.00 0.00 0.00 2.57
571 585 0.532115 GCCTAAGCACCCCAATGTTG 59.468 55.000 0.00 0.00 39.53 3.33
574 588 0.107410 TACGCCTAAGCACCCCAATG 60.107 55.000 0.00 0.00 39.83 2.82
579 593 1.521681 CAGCTACGCCTAAGCACCC 60.522 63.158 0.00 0.00 42.62 4.61
580 594 2.174319 GCAGCTACGCCTAAGCACC 61.174 63.158 0.00 0.00 42.62 5.01
593 620 4.989279 TTTCTTTGAAAGTTCAGCAGCT 57.011 36.364 4.68 0.00 38.61 4.24
594 621 4.380974 CGATTTCTTTGAAAGTTCAGCAGC 59.619 41.667 4.68 0.00 38.61 5.25
606 633 8.746052 AACCATTGGATATACGATTTCTTTGA 57.254 30.769 10.37 0.00 0.00 2.69
737 776 3.214328 AGTGTCCATGGTGTCTGAAAAC 58.786 45.455 12.58 0.00 0.00 2.43
783 824 0.654683 GCTCTCAATCGTGTCCATGC 59.345 55.000 0.00 0.00 0.00 4.06
796 837 2.419673 CGTGCAAATTGTATGGCTCTCA 59.580 45.455 0.00 0.00 0.00 3.27
871 919 1.902765 ATGGATGTGCCTGTCGCTGA 61.903 55.000 0.00 0.00 38.78 4.26
1014 1082 0.451783 GTAGAAGGTGGGCAAATGCG 59.548 55.000 0.00 0.00 43.26 4.73
1032 1100 2.484947 GGACACCAAGACGAGGAAAAGT 60.485 50.000 0.00 0.00 0.00 2.66
1056 1124 0.324738 TAGCAGAGTAGCAGGCCACT 60.325 55.000 5.01 4.14 36.85 4.00
1137 1205 4.408821 GCTCCGGTGATGGTGGCA 62.409 66.667 7.92 0.00 0.00 4.92
1185 1271 2.047465 CCGTCAGCAAGCTCAGCT 60.047 61.111 7.74 7.74 44.62 4.24
1197 1286 0.321564 CAATGTGGAAGCTCCCGTCA 60.322 55.000 0.00 0.00 35.03 4.35
1204 1293 3.064324 GGCCGCAATGTGGAAGCT 61.064 61.111 18.19 0.00 34.74 3.74
1310 1399 0.109873 GACGACGACGACCTTGACAT 60.110 55.000 15.32 0.00 42.66 3.06
1367 1483 1.453155 CTTGGTAAGCATGAACCGCT 58.547 50.000 0.00 0.00 42.98 5.52
1380 1496 2.263540 GCGAAGGCGTCCTTGGTA 59.736 61.111 14.63 0.00 44.82 3.25
1411 1527 2.665000 CTGACCATCGGCACCAGT 59.335 61.111 0.00 0.00 0.00 4.00
1470 1610 5.078411 TCACTGCAAGGTTTTTGCTTTTA 57.922 34.783 12.45 0.00 45.13 1.52
1485 1625 1.915266 CTCCTCCACCCTCACTGCA 60.915 63.158 0.00 0.00 0.00 4.41
1488 1628 1.304547 CGTCTCCTCCACCCTCACT 60.305 63.158 0.00 0.00 0.00 3.41
1609 1755 1.228769 TACTCTGGGTCGTGGCAGT 60.229 57.895 0.00 0.00 0.00 4.40
1610 1756 1.215647 GTACTCTGGGTCGTGGCAG 59.784 63.158 0.00 0.00 0.00 4.85
1611 1757 2.280552 GGTACTCTGGGTCGTGGCA 61.281 63.158 0.00 0.00 0.00 4.92
1612 1758 2.577593 GGTACTCTGGGTCGTGGC 59.422 66.667 0.00 0.00 0.00 5.01
1613 1759 2.882876 CGGTACTCTGGGTCGTGG 59.117 66.667 0.00 0.00 0.00 4.94
1614 1760 2.181021 GCGGTACTCTGGGTCGTG 59.819 66.667 0.00 0.00 0.00 4.35
1643 1789 1.627834 TCATGTACTGCCATGTGGTCA 59.372 47.619 0.35 0.00 42.29 4.02
1647 1793 0.374758 GCGTCATGTACTGCCATGTG 59.625 55.000 7.51 4.25 42.29 3.21
1720 1866 3.760035 GACGAGCCGGAGCCTCAA 61.760 66.667 5.05 0.00 41.25 3.02
1896 2045 2.440253 TCTGAGCTCCTACTACTCCTCC 59.560 54.545 12.15 0.00 0.00 4.30
1897 2046 3.849563 TCTGAGCTCCTACTACTCCTC 57.150 52.381 12.15 0.00 0.00 3.71
1898 2047 3.719479 TCATCTGAGCTCCTACTACTCCT 59.281 47.826 12.15 0.00 0.00 3.69
1899 2048 3.818773 GTCATCTGAGCTCCTACTACTCC 59.181 52.174 12.15 0.00 0.00 3.85
1903 2055 3.634448 GCTTGTCATCTGAGCTCCTACTA 59.366 47.826 12.15 0.00 33.72 1.82
2024 2195 5.994054 ACGATATCTGTAGTGTACGGTGTAT 59.006 40.000 0.34 0.00 36.45 2.29
2532 2703 9.494271 CCACTACAATACTTGATAATATGCACT 57.506 33.333 0.00 0.00 0.00 4.40
2552 2723 6.150809 GTGTACCTCTATGTATAGCCCACTAC 59.849 46.154 0.00 0.00 0.00 2.73
2554 2725 5.078256 GTGTACCTCTATGTATAGCCCACT 58.922 45.833 0.00 0.00 0.00 4.00
2563 2734 6.482524 ACTCTCAAGTGTGTACCTCTATGTA 58.517 40.000 0.00 0.00 33.32 2.29
2565 2736 5.906113 ACTCTCAAGTGTGTACCTCTATG 57.094 43.478 0.00 0.00 33.32 2.23
2573 2747 3.321111 GGGTCTCAACTCTCAAGTGTGTA 59.679 47.826 0.00 0.00 35.36 2.90
2582 2756 5.127845 TGACAATGATAGGGTCTCAACTCTC 59.872 44.000 0.00 0.00 37.43 3.20
2586 2760 5.882557 ACAATGACAATGATAGGGTCTCAAC 59.117 40.000 0.00 0.00 32.84 3.18
2587 2761 6.065976 ACAATGACAATGATAGGGTCTCAA 57.934 37.500 0.00 0.00 32.84 3.02
2588 2762 5.698741 ACAATGACAATGATAGGGTCTCA 57.301 39.130 0.00 0.00 32.84 3.27
2589 2763 6.821388 AGTACAATGACAATGATAGGGTCTC 58.179 40.000 0.00 0.00 32.84 3.36
2590 2764 6.384015 TGAGTACAATGACAATGATAGGGTCT 59.616 38.462 0.00 0.00 32.84 3.85
2591 2765 6.582636 TGAGTACAATGACAATGATAGGGTC 58.417 40.000 0.00 0.00 0.00 4.46
2592 2766 6.560003 TGAGTACAATGACAATGATAGGGT 57.440 37.500 0.00 0.00 0.00 4.34
2593 2767 6.072838 GCATGAGTACAATGACAATGATAGGG 60.073 42.308 11.58 0.00 0.00 3.53
2627 2801 2.238084 AGCTCACCCTCACACTCATA 57.762 50.000 0.00 0.00 0.00 2.15
2644 2821 3.442273 AGATTAGACTAGCTGCCGATAGC 59.558 47.826 0.00 3.07 44.01 2.97
2670 2847 5.835819 CCGGGATATACCTATGATGAGACAT 59.164 44.000 1.51 0.00 38.98 3.06
2733 2910 2.228822 AGAAACATCAACAATGGCCGAC 59.771 45.455 0.00 0.00 39.90 4.79
2734 2911 2.487762 GAGAAACATCAACAATGGCCGA 59.512 45.455 0.00 0.00 39.90 5.54
2735 2912 2.489329 AGAGAAACATCAACAATGGCCG 59.511 45.455 0.00 0.00 39.90 6.13
2736 2913 5.841957 ATAGAGAAACATCAACAATGGCC 57.158 39.130 0.00 0.00 39.90 5.36
2737 2914 6.855836 TCAATAGAGAAACATCAACAATGGC 58.144 36.000 0.00 0.00 39.90 4.40
2738 2915 9.865321 AATTCAATAGAGAAACATCAACAATGG 57.135 29.630 0.00 0.00 39.90 3.16
2741 2918 9.695526 CCAAATTCAATAGAGAAACATCAACAA 57.304 29.630 0.00 0.00 0.00 2.83
2742 2919 9.076781 TCCAAATTCAATAGAGAAACATCAACA 57.923 29.630 0.00 0.00 0.00 3.33
2743 2920 9.565213 CTCCAAATTCAATAGAGAAACATCAAC 57.435 33.333 0.00 0.00 0.00 3.18
2744 2921 9.519191 TCTCCAAATTCAATAGAGAAACATCAA 57.481 29.630 0.00 0.00 30.88 2.57
2745 2922 8.950210 GTCTCCAAATTCAATAGAGAAACATCA 58.050 33.333 0.00 0.00 35.48 3.07
2746 2923 8.950210 TGTCTCCAAATTCAATAGAGAAACATC 58.050 33.333 0.00 0.00 35.48 3.06
2747 2924 8.734386 GTGTCTCCAAATTCAATAGAGAAACAT 58.266 33.333 9.15 0.00 40.21 2.71
2748 2925 7.939039 AGTGTCTCCAAATTCAATAGAGAAACA 59.061 33.333 13.82 2.33 42.06 2.83
2749 2926 8.329203 AGTGTCTCCAAATTCAATAGAGAAAC 57.671 34.615 7.02 7.02 40.60 2.78
2750 2927 8.924511 AAGTGTCTCCAAATTCAATAGAGAAA 57.075 30.769 0.00 0.00 35.48 2.52
2752 2929 9.823647 GATAAGTGTCTCCAAATTCAATAGAGA 57.176 33.333 0.00 0.00 0.00 3.10
2753 2930 9.605275 TGATAAGTGTCTCCAAATTCAATAGAG 57.395 33.333 0.00 0.00 0.00 2.43
2754 2931 9.958180 TTGATAAGTGTCTCCAAATTCAATAGA 57.042 29.630 0.00 0.00 0.00 1.98
2756 2933 8.677300 GCTTGATAAGTGTCTCCAAATTCAATA 58.323 33.333 0.00 0.00 0.00 1.90
2757 2934 7.542025 GCTTGATAAGTGTCTCCAAATTCAAT 58.458 34.615 0.00 0.00 0.00 2.57
2758 2935 6.348458 CGCTTGATAAGTGTCTCCAAATTCAA 60.348 38.462 0.00 0.00 34.37 2.69
2759 2936 5.122239 CGCTTGATAAGTGTCTCCAAATTCA 59.878 40.000 0.00 0.00 34.37 2.57
2760 2937 5.563842 CGCTTGATAAGTGTCTCCAAATTC 58.436 41.667 0.00 0.00 34.37 2.17
2761 2938 5.551760 CGCTTGATAAGTGTCTCCAAATT 57.448 39.130 0.00 0.00 34.37 1.82
2791 2968 3.791245 AGTGGATTCGCAAAAGCAAAAA 58.209 36.364 0.00 0.00 0.00 1.94
2792 2969 3.451141 AGTGGATTCGCAAAAGCAAAA 57.549 38.095 0.00 0.00 0.00 2.44
2793 2970 3.451141 AAGTGGATTCGCAAAAGCAAA 57.549 38.095 0.00 0.00 0.00 3.68
2794 2971 4.217334 TGATAAGTGGATTCGCAAAAGCAA 59.783 37.500 0.00 0.00 0.00 3.91
2795 2972 3.755905 TGATAAGTGGATTCGCAAAAGCA 59.244 39.130 0.00 0.00 0.00 3.91
2796 2973 4.355543 TGATAAGTGGATTCGCAAAAGC 57.644 40.909 0.00 0.00 0.00 3.51
2797 2974 5.942872 ACTTGATAAGTGGATTCGCAAAAG 58.057 37.500 0.00 0.00 41.01 2.27
2798 2975 5.957842 ACTTGATAAGTGGATTCGCAAAA 57.042 34.783 0.00 0.00 41.01 2.44
2810 2987 3.944650 TGCACACAACACACTTGATAAGT 59.055 39.130 0.00 0.00 44.06 2.24
2836 3013 6.074729 CGTAAGACAATGCCATGCAAATTATG 60.075 38.462 0.00 0.00 41.13 1.90
2837 3014 5.978919 CGTAAGACAATGCCATGCAAATTAT 59.021 36.000 0.00 0.00 41.13 1.28
2838 3015 5.339177 CGTAAGACAATGCCATGCAAATTA 58.661 37.500 0.00 0.00 41.13 1.40
2839 3016 4.175516 CGTAAGACAATGCCATGCAAATT 58.824 39.130 0.00 0.00 41.13 1.82
2840 3017 3.772932 CGTAAGACAATGCCATGCAAAT 58.227 40.909 0.00 0.00 41.13 2.32
2841 3018 2.670789 GCGTAAGACAATGCCATGCAAA 60.671 45.455 0.00 0.00 41.13 3.68
2870 3047 1.382695 GATGGGGAGGAAGGACGGA 60.383 63.158 0.00 0.00 0.00 4.69
2878 3055 6.140377 GTTTAAAAATATGGGATGGGGAGGA 58.860 40.000 0.00 0.00 0.00 3.71
2882 3059 5.924356 GTGGTTTAAAAATATGGGATGGGG 58.076 41.667 0.00 0.00 0.00 4.96


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.