Multiple sequence alignment - TraesCS7A01G543500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G543500 chr7A 100.000 2614 0 0 1 2614 720224333 720221720 0.000000e+00 4828
1 TraesCS7A01G543500 chr7A 93.939 363 14 1 2252 2614 720213509 720213155 2.290000e-150 542
2 TraesCS7A01G543500 chr7A 96.644 298 10 0 2317 2614 720183208 720182911 1.810000e-136 496
3 TraesCS7A01G543500 chr7A 95.973 298 12 0 2317 2614 720296902 720296605 3.910000e-133 484
4 TraesCS7A01G543500 chr7A 93.581 296 19 0 2319 2614 681560592 681560887 2.390000e-120 442
5 TraesCS7A01G543500 chr7A 93.537 294 19 0 2319 2612 506249309 506249602 3.090000e-119 438
6 TraesCS7A01G543500 chr4A 96.762 2316 36 4 1 2316 601692885 601690609 0.000000e+00 3825
7 TraesCS7A01G543500 chr3A 96.936 2252 43 10 65 2316 717429436 717431661 0.000000e+00 3753
8 TraesCS7A01G543500 chr3A 98.485 66 1 0 1 66 717429392 717429457 1.640000e-22 117
9 TraesCS7A01G543500 chr1A 96.543 2256 40 15 65 2318 14735548 14737767 0.000000e+00 3699
10 TraesCS7A01G543500 chr1A 91.655 707 29 9 1 706 48230328 48229651 0.000000e+00 952
11 TraesCS7A01G543500 chr1A 100.000 66 0 0 1 66 14735504 14735569 3.530000e-24 122
12 TraesCS7A01G543500 chr2B 95.304 2257 76 11 65 2316 83722237 83724468 0.000000e+00 3554
13 TraesCS7A01G543500 chr2B 100.000 66 0 0 1 66 83722193 83722258 3.530000e-24 122
14 TraesCS7A01G543500 chr1D 93.189 2261 128 15 65 2316 419053333 419055576 0.000000e+00 3299
15 TraesCS7A01G543500 chr1D 92.250 2258 150 15 65 2316 34229503 34231741 0.000000e+00 3177
16 TraesCS7A01G543500 chr5B 96.700 1909 58 3 69 1974 341514032 341512126 0.000000e+00 3171
17 TraesCS7A01G543500 chr5B 91.182 1599 113 5 719 2316 705458365 705459936 0.000000e+00 2146
18 TraesCS7A01G543500 chr5B 95.442 351 16 0 1966 2316 341512178 341511828 6.320000e-156 560
19 TraesCS7A01G543500 chr7D 91.502 2330 130 18 1 2316 61669351 61667076 0.000000e+00 3144
20 TraesCS7A01G543500 chr2D 96.345 1915 65 4 65 1979 302022150 302020241 0.000000e+00 3144
21 TraesCS7A01G543500 chr2D 95.157 351 17 0 1966 2316 302020298 302019948 2.940000e-154 555
22 TraesCS7A01G543500 chr2D 98.485 66 1 0 1 66 302022194 302022129 1.640000e-22 117
23 TraesCS7A01G543500 chr4B 91.737 2263 150 23 65 2318 642268833 642271067 0.000000e+00 3109
24 TraesCS7A01G543500 chr5A 91.108 2328 140 27 1 2318 338458862 338456592 0.000000e+00 3090
25 TraesCS7A01G543500 chr5A 92.500 1760 115 9 65 1816 501189681 501187931 0.000000e+00 2503
26 TraesCS7A01G543500 chr5A 95.533 291 13 0 2324 2614 309641839 309642129 1.420000e-127 466
27 TraesCS7A01G543500 chr5A 94.502 291 16 0 2324 2614 9870138 9869848 1.430000e-122 449
28 TraesCS7A01G543500 chr5A 94.158 291 17 0 2324 2614 337617565 337617855 6.640000e-121 444
29 TraesCS7A01G543500 chr3B 85.491 1089 113 18 933 1982 794848010 794846928 0.000000e+00 1094
30 TraesCS7A01G543500 chr6A 94.158 291 17 0 2324 2614 435888665 435888375 6.640000e-121 444
31 TraesCS7A01G543500 chrUn 87.324 213 4 1 1 213 340611213 340611024 3.390000e-54 222


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G543500 chr7A 720221720 720224333 2613 True 4828.0 4828 100.000000 1 2614 1 chr7A.!!$R3 2613
1 TraesCS7A01G543500 chr4A 601690609 601692885 2276 True 3825.0 3825 96.762000 1 2316 1 chr4A.!!$R1 2315
2 TraesCS7A01G543500 chr3A 717429392 717431661 2269 False 1935.0 3753 97.710500 1 2316 2 chr3A.!!$F1 2315
3 TraesCS7A01G543500 chr1A 14735504 14737767 2263 False 1910.5 3699 98.271500 1 2318 2 chr1A.!!$F1 2317
4 TraesCS7A01G543500 chr1A 48229651 48230328 677 True 952.0 952 91.655000 1 706 1 chr1A.!!$R1 705
5 TraesCS7A01G543500 chr2B 83722193 83724468 2275 False 1838.0 3554 97.652000 1 2316 2 chr2B.!!$F1 2315
6 TraesCS7A01G543500 chr1D 419053333 419055576 2243 False 3299.0 3299 93.189000 65 2316 1 chr1D.!!$F2 2251
7 TraesCS7A01G543500 chr1D 34229503 34231741 2238 False 3177.0 3177 92.250000 65 2316 1 chr1D.!!$F1 2251
8 TraesCS7A01G543500 chr5B 705458365 705459936 1571 False 2146.0 2146 91.182000 719 2316 1 chr5B.!!$F1 1597
9 TraesCS7A01G543500 chr5B 341511828 341514032 2204 True 1865.5 3171 96.071000 69 2316 2 chr5B.!!$R1 2247
10 TraesCS7A01G543500 chr7D 61667076 61669351 2275 True 3144.0 3144 91.502000 1 2316 1 chr7D.!!$R1 2315
11 TraesCS7A01G543500 chr2D 302019948 302022194 2246 True 1272.0 3144 96.662333 1 2316 3 chr2D.!!$R1 2315
12 TraesCS7A01G543500 chr4B 642268833 642271067 2234 False 3109.0 3109 91.737000 65 2318 1 chr4B.!!$F1 2253
13 TraesCS7A01G543500 chr5A 338456592 338458862 2270 True 3090.0 3090 91.108000 1 2318 1 chr5A.!!$R2 2317
14 TraesCS7A01G543500 chr5A 501187931 501189681 1750 True 2503.0 2503 92.500000 65 1816 1 chr5A.!!$R3 1751
15 TraesCS7A01G543500 chr3B 794846928 794848010 1082 True 1094.0 1094 85.491000 933 1982 1 chr3B.!!$R1 1049

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
618 626 0.904649 TGTGACCTATCAGCCACCTG 59.095 55.0 0.0 0.0 40.54 4.0 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2423 2581 0.039618 AAAATGCTCCACGTCCCCAT 59.96 50.0 0.0 0.0 0.0 4.0 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 50 4.383010 CCTGTGCACTGTGATAATCTGGTA 60.383 45.833 19.41 0.00 0.00 3.25
50 51 5.159273 TGTGCACTGTGATAATCTGGTAA 57.841 39.130 19.41 0.00 0.00 2.85
51 52 5.178061 TGTGCACTGTGATAATCTGGTAAG 58.822 41.667 19.41 0.00 0.00 2.34
52 53 5.178797 GTGCACTGTGATAATCTGGTAAGT 58.821 41.667 12.86 0.00 0.00 2.24
53 54 5.292101 GTGCACTGTGATAATCTGGTAAGTC 59.708 44.000 12.86 0.00 0.00 3.01
54 55 5.046663 TGCACTGTGATAATCTGGTAAGTCA 60.047 40.000 12.86 0.00 0.00 3.41
55 56 5.874810 GCACTGTGATAATCTGGTAAGTCAA 59.125 40.000 12.86 0.00 0.00 3.18
56 57 6.371548 GCACTGTGATAATCTGGTAAGTCAAA 59.628 38.462 12.86 0.00 0.00 2.69
57 58 7.624344 GCACTGTGATAATCTGGTAAGTCAAAC 60.624 40.741 12.86 0.00 0.00 2.93
58 59 7.387673 CACTGTGATAATCTGGTAAGTCAAACA 59.612 37.037 0.32 0.00 0.00 2.83
59 60 8.103305 ACTGTGATAATCTGGTAAGTCAAACAT 58.897 33.333 0.00 0.00 0.00 2.71
60 61 8.267620 TGTGATAATCTGGTAAGTCAAACATG 57.732 34.615 0.00 0.00 0.00 3.21
61 62 7.882791 TGTGATAATCTGGTAAGTCAAACATGT 59.117 33.333 0.00 0.00 0.00 3.21
62 63 8.177663 GTGATAATCTGGTAAGTCAAACATGTG 58.822 37.037 0.00 0.00 0.00 3.21
63 64 5.964958 AATCTGGTAAGTCAAACATGTGG 57.035 39.130 0.00 0.00 0.00 4.17
64 65 3.146066 TCTGGTAAGTCAAACATGTGGC 58.854 45.455 0.00 0.00 0.00 5.01
65 66 3.149196 CTGGTAAGTCAAACATGTGGCT 58.851 45.455 0.00 0.00 34.00 4.75
66 67 2.884012 TGGTAAGTCAAACATGTGGCTG 59.116 45.455 0.00 0.00 32.56 4.85
67 68 2.884639 GGTAAGTCAAACATGTGGCTGT 59.115 45.455 0.00 0.00 32.56 4.40
84 85 3.563808 GGCTGTGTAAGTCAAACATGTGA 59.436 43.478 0.00 0.00 0.00 3.58
85 86 4.216257 GGCTGTGTAAGTCAAACATGTGAT 59.784 41.667 0.00 0.00 0.00 3.06
86 87 5.411361 GGCTGTGTAAGTCAAACATGTGATA 59.589 40.000 0.00 0.00 0.00 2.15
87 88 6.072728 GGCTGTGTAAGTCAAACATGTGATAA 60.073 38.462 0.00 0.00 0.00 1.75
298 299 2.611971 GCTACACCGATGTTGTCCAAGA 60.612 50.000 0.00 0.00 40.48 3.02
357 359 7.875554 ACCATCAATTTTTACCTTTTTGCGTAT 59.124 29.630 0.00 0.00 0.00 3.06
618 626 0.904649 TGTGACCTATCAGCCACCTG 59.095 55.000 0.00 0.00 40.54 4.00
1147 1170 1.402787 TGTCCATGCGAGATCTAGCA 58.597 50.000 29.11 29.11 44.79 3.49
1458 1482 8.041919 ACTGCTAGAACCTACCTTCTTATTTTC 58.958 37.037 0.00 0.00 32.54 2.29
1528 1553 2.818130 TTTTGCTGCTCCATTGTTCC 57.182 45.000 0.00 0.00 0.00 3.62
1561 1587 5.804639 AGATGCAAGGTCAATGTTACTGTA 58.195 37.500 0.00 0.00 0.00 2.74
1838 1906 2.616510 CCAAAACAAACAGGCCAACCAA 60.617 45.455 5.01 0.00 39.06 3.67
1963 2099 2.831366 GCGCCACATCAGCTCCATG 61.831 63.158 0.00 1.23 0.00 3.66
1964 2100 1.450848 CGCCACATCAGCTCCATGT 60.451 57.895 2.43 2.43 34.67 3.21
1965 2101 1.028330 CGCCACATCAGCTCCATGTT 61.028 55.000 5.24 0.00 31.83 2.71
1966 2102 0.454600 GCCACATCAGCTCCATGTTG 59.545 55.000 5.24 4.10 31.83 3.33
1967 2103 1.100510 CCACATCAGCTCCATGTTGG 58.899 55.000 5.24 7.07 39.43 3.77
1968 2104 0.454600 CACATCAGCTCCATGTTGGC 59.545 55.000 5.24 0.00 37.47 4.52
1969 2105 1.028330 ACATCAGCTCCATGTTGGCG 61.028 55.000 2.43 0.00 37.47 5.69
1973 2109 4.120331 GCTCCATGTTGGCGCCAC 62.120 66.667 32.95 24.14 42.16 5.01
1974 2110 2.672651 CTCCATGTTGGCGCCACA 60.673 61.111 32.95 28.90 37.47 4.17
1975 2111 2.035469 TCCATGTTGGCGCCACAT 59.965 55.556 32.95 29.74 37.47 3.21
1976 2112 1.996786 CTCCATGTTGGCGCCACATC 61.997 60.000 32.95 22.40 37.47 3.06
1977 2113 2.341875 CCATGTTGGCGCCACATCA 61.342 57.895 32.95 27.21 0.00 3.07
1978 2114 1.138036 CATGTTGGCGCCACATCAG 59.862 57.895 32.95 19.13 0.00 2.90
1979 2115 2.703798 ATGTTGGCGCCACATCAGC 61.704 57.895 32.95 15.31 0.00 4.26
1980 2116 3.058160 GTTGGCGCCACATCAGCT 61.058 61.111 32.95 0.00 0.00 4.24
1981 2117 2.747460 TTGGCGCCACATCAGCTC 60.747 61.111 32.95 0.00 0.00 4.09
1982 2118 4.783621 TGGCGCCACATCAGCTCC 62.784 66.667 29.03 0.00 35.62 4.70
1983 2119 4.783621 GGCGCCACATCAGCTCCA 62.784 66.667 24.80 0.00 35.15 3.86
1984 2120 3.200593 GCGCCACATCAGCTCCAG 61.201 66.667 0.00 0.00 0.00 3.86
2022 2180 3.124921 ACGCTGGCGCCATGTTAC 61.125 61.111 32.87 15.94 44.19 2.50
2147 2305 2.110213 GGTGACGGCAACAGACCA 59.890 61.111 0.00 0.00 0.00 4.02
2258 2416 2.825836 CCGGCCATCCTTGACAGC 60.826 66.667 2.24 0.00 0.00 4.40
2318 2476 6.874134 AGATTAACGACTTTCTTGTAGTGCAT 59.126 34.615 0.00 0.00 0.00 3.96
2319 2477 4.732285 AACGACTTTCTTGTAGTGCATG 57.268 40.909 0.00 0.00 0.00 4.06
2320 2478 3.728845 ACGACTTTCTTGTAGTGCATGT 58.271 40.909 0.00 0.00 0.00 3.21
2321 2479 4.127171 ACGACTTTCTTGTAGTGCATGTT 58.873 39.130 0.00 0.00 0.00 2.71
2322 2480 4.211374 ACGACTTTCTTGTAGTGCATGTTC 59.789 41.667 0.00 0.00 0.00 3.18
2323 2481 4.449068 CGACTTTCTTGTAGTGCATGTTCT 59.551 41.667 0.00 0.00 0.00 3.01
2324 2482 5.050091 CGACTTTCTTGTAGTGCATGTTCTT 60.050 40.000 0.00 0.00 0.00 2.52
2325 2483 6.064846 ACTTTCTTGTAGTGCATGTTCTTG 57.935 37.500 0.00 0.00 0.00 3.02
2326 2484 5.590259 ACTTTCTTGTAGTGCATGTTCTTGT 59.410 36.000 0.00 0.00 0.00 3.16
2327 2485 6.095440 ACTTTCTTGTAGTGCATGTTCTTGTT 59.905 34.615 0.00 0.00 0.00 2.83
2328 2486 6.449635 TTCTTGTAGTGCATGTTCTTGTTT 57.550 33.333 0.00 0.00 0.00 2.83
2329 2487 6.449635 TCTTGTAGTGCATGTTCTTGTTTT 57.550 33.333 0.00 0.00 0.00 2.43
2330 2488 6.264832 TCTTGTAGTGCATGTTCTTGTTTTG 58.735 36.000 0.00 0.00 0.00 2.44
2331 2489 5.826601 TGTAGTGCATGTTCTTGTTTTGA 57.173 34.783 0.00 0.00 0.00 2.69
2332 2490 5.820131 TGTAGTGCATGTTCTTGTTTTGAG 58.180 37.500 0.00 0.00 0.00 3.02
2333 2491 3.709987 AGTGCATGTTCTTGTTTTGAGC 58.290 40.909 0.00 0.00 0.00 4.26
2334 2492 3.382546 AGTGCATGTTCTTGTTTTGAGCT 59.617 39.130 0.00 0.00 0.00 4.09
2335 2493 3.488310 GTGCATGTTCTTGTTTTGAGCTG 59.512 43.478 0.00 0.00 0.00 4.24
2336 2494 3.130869 TGCATGTTCTTGTTTTGAGCTGT 59.869 39.130 0.00 0.00 0.00 4.40
2337 2495 4.114794 GCATGTTCTTGTTTTGAGCTGTT 58.885 39.130 0.00 0.00 0.00 3.16
2338 2496 4.207841 GCATGTTCTTGTTTTGAGCTGTTC 59.792 41.667 0.00 0.00 0.00 3.18
2339 2497 4.370364 TGTTCTTGTTTTGAGCTGTTCC 57.630 40.909 0.00 0.00 0.00 3.62
2340 2498 4.016444 TGTTCTTGTTTTGAGCTGTTCCT 58.984 39.130 0.00 0.00 0.00 3.36
2341 2499 4.142403 TGTTCTTGTTTTGAGCTGTTCCTG 60.142 41.667 0.00 0.00 0.00 3.86
2342 2500 2.358898 TCTTGTTTTGAGCTGTTCCTGC 59.641 45.455 0.00 0.00 0.00 4.85
2343 2501 2.057137 TGTTTTGAGCTGTTCCTGCT 57.943 45.000 0.00 0.00 41.16 4.24
2344 2502 3.207265 TGTTTTGAGCTGTTCCTGCTA 57.793 42.857 0.00 0.00 38.70 3.49
2345 2503 3.550820 TGTTTTGAGCTGTTCCTGCTAA 58.449 40.909 0.00 0.00 38.70 3.09
2346 2504 3.315191 TGTTTTGAGCTGTTCCTGCTAAC 59.685 43.478 0.00 0.00 38.70 2.34
2347 2505 1.795768 TTGAGCTGTTCCTGCTAACG 58.204 50.000 0.00 0.00 38.70 3.18
2348 2506 0.966179 TGAGCTGTTCCTGCTAACGA 59.034 50.000 0.00 0.00 38.70 3.85
2349 2507 1.550524 TGAGCTGTTCCTGCTAACGAT 59.449 47.619 0.00 0.00 38.70 3.73
2350 2508 2.028112 TGAGCTGTTCCTGCTAACGATT 60.028 45.455 0.00 0.00 38.70 3.34
2351 2509 3.194755 TGAGCTGTTCCTGCTAACGATTA 59.805 43.478 0.00 0.00 38.70 1.75
2352 2510 3.786635 AGCTGTTCCTGCTAACGATTAG 58.213 45.455 0.00 0.00 36.91 1.73
2353 2511 3.447586 AGCTGTTCCTGCTAACGATTAGA 59.552 43.478 8.39 0.00 36.91 2.10
2354 2512 3.799420 GCTGTTCCTGCTAACGATTAGAG 59.201 47.826 8.39 4.33 35.20 2.43
2355 2513 4.440250 GCTGTTCCTGCTAACGATTAGAGA 60.440 45.833 8.39 1.13 35.20 3.10
2356 2514 5.651530 CTGTTCCTGCTAACGATTAGAGAA 58.348 41.667 8.39 5.62 35.20 2.87
2357 2515 6.032956 TGTTCCTGCTAACGATTAGAGAAA 57.967 37.500 8.39 0.00 35.20 2.52
2358 2516 6.640518 TGTTCCTGCTAACGATTAGAGAAAT 58.359 36.000 8.39 0.00 35.20 2.17
2359 2517 7.778083 TGTTCCTGCTAACGATTAGAGAAATA 58.222 34.615 8.39 1.30 35.20 1.40
2360 2518 8.421784 TGTTCCTGCTAACGATTAGAGAAATAT 58.578 33.333 8.39 0.00 35.20 1.28
2361 2519 8.704234 GTTCCTGCTAACGATTAGAGAAATATG 58.296 37.037 8.39 0.00 35.20 1.78
2362 2520 7.952671 TCCTGCTAACGATTAGAGAAATATGT 58.047 34.615 8.39 0.00 35.20 2.29
2363 2521 8.082852 TCCTGCTAACGATTAGAGAAATATGTC 58.917 37.037 8.39 0.00 35.20 3.06
2364 2522 7.061210 CCTGCTAACGATTAGAGAAATATGTCG 59.939 40.741 8.39 0.00 35.20 4.35
2365 2523 7.423199 TGCTAACGATTAGAGAAATATGTCGT 58.577 34.615 8.39 0.00 35.20 4.34
2366 2524 7.590322 TGCTAACGATTAGAGAAATATGTCGTC 59.410 37.037 8.39 0.00 35.20 4.20
2367 2525 7.060864 GCTAACGATTAGAGAAATATGTCGTCC 59.939 40.741 8.39 0.00 35.20 4.79
2368 2526 5.770417 ACGATTAGAGAAATATGTCGTCCC 58.230 41.667 0.00 0.00 0.00 4.46
2369 2527 5.301045 ACGATTAGAGAAATATGTCGTCCCA 59.699 40.000 0.00 0.00 0.00 4.37
2370 2528 5.859114 CGATTAGAGAAATATGTCGTCCCAG 59.141 44.000 0.00 0.00 0.00 4.45
2371 2529 5.531122 TTAGAGAAATATGTCGTCCCAGG 57.469 43.478 0.00 0.00 0.00 4.45
2372 2530 3.643237 AGAGAAATATGTCGTCCCAGGA 58.357 45.455 0.00 0.00 0.00 3.86
2373 2531 4.227197 AGAGAAATATGTCGTCCCAGGAT 58.773 43.478 0.00 0.00 0.00 3.24
2374 2532 4.656112 AGAGAAATATGTCGTCCCAGGATT 59.344 41.667 0.00 0.00 0.00 3.01
2375 2533 4.962155 AGAAATATGTCGTCCCAGGATTC 58.038 43.478 0.00 0.00 0.00 2.52
2376 2534 3.386768 AATATGTCGTCCCAGGATTCG 57.613 47.619 0.00 0.00 0.00 3.34
2377 2535 1.037493 TATGTCGTCCCAGGATTCGG 58.963 55.000 0.00 0.00 0.00 4.30
2378 2536 0.686441 ATGTCGTCCCAGGATTCGGA 60.686 55.000 0.00 0.00 0.00 4.55
2379 2537 0.901114 TGTCGTCCCAGGATTCGGAA 60.901 55.000 0.00 0.00 0.00 4.30
2380 2538 0.179108 GTCGTCCCAGGATTCGGAAG 60.179 60.000 0.00 0.00 0.00 3.46
2381 2539 1.144057 CGTCCCAGGATTCGGAAGG 59.856 63.158 0.00 0.00 0.00 3.46
2382 2540 1.327690 CGTCCCAGGATTCGGAAGGA 61.328 60.000 0.00 0.00 0.00 3.36
2383 2541 0.466124 GTCCCAGGATTCGGAAGGAG 59.534 60.000 0.00 0.00 0.00 3.69
2384 2542 0.338467 TCCCAGGATTCGGAAGGAGA 59.662 55.000 0.00 0.00 0.00 3.71
2385 2543 1.204146 CCCAGGATTCGGAAGGAGAA 58.796 55.000 0.00 0.00 0.00 2.87
2386 2544 1.559682 CCCAGGATTCGGAAGGAGAAA 59.440 52.381 0.00 0.00 0.00 2.52
2387 2545 2.420687 CCCAGGATTCGGAAGGAGAAAG 60.421 54.545 0.00 0.00 0.00 2.62
2388 2546 2.284190 CAGGATTCGGAAGGAGAAAGC 58.716 52.381 0.00 0.00 0.00 3.51
2389 2547 2.093235 CAGGATTCGGAAGGAGAAAGCT 60.093 50.000 0.00 0.00 0.00 3.74
2390 2548 3.133003 CAGGATTCGGAAGGAGAAAGCTA 59.867 47.826 0.00 0.00 0.00 3.32
2391 2549 3.970640 AGGATTCGGAAGGAGAAAGCTAT 59.029 43.478 0.00 0.00 0.00 2.97
2392 2550 4.061596 GGATTCGGAAGGAGAAAGCTATG 58.938 47.826 0.00 0.00 0.00 2.23
2393 2551 4.443598 GGATTCGGAAGGAGAAAGCTATGT 60.444 45.833 0.00 0.00 0.00 2.29
2394 2552 3.526931 TCGGAAGGAGAAAGCTATGTG 57.473 47.619 0.00 0.00 0.00 3.21
2395 2553 2.168521 TCGGAAGGAGAAAGCTATGTGG 59.831 50.000 0.00 0.00 0.00 4.17
2396 2554 2.293170 GGAAGGAGAAAGCTATGTGGC 58.707 52.381 0.00 0.00 0.00 5.01
2397 2555 2.092699 GGAAGGAGAAAGCTATGTGGCT 60.093 50.000 0.00 0.00 45.30 4.75
2398 2556 2.706339 AGGAGAAAGCTATGTGGCTG 57.294 50.000 0.00 0.00 42.24 4.85
2399 2557 2.191400 AGGAGAAAGCTATGTGGCTGA 58.809 47.619 0.00 0.00 42.24 4.26
2400 2558 2.776536 AGGAGAAAGCTATGTGGCTGAT 59.223 45.455 0.00 0.00 42.24 2.90
2401 2559 3.201708 AGGAGAAAGCTATGTGGCTGATT 59.798 43.478 0.00 0.00 42.24 2.57
2402 2560 4.410228 AGGAGAAAGCTATGTGGCTGATTA 59.590 41.667 0.00 0.00 42.24 1.75
2403 2561 5.072872 AGGAGAAAGCTATGTGGCTGATTAT 59.927 40.000 0.00 0.00 42.24 1.28
2404 2562 5.411053 GGAGAAAGCTATGTGGCTGATTATC 59.589 44.000 0.00 0.00 42.24 1.75
2405 2563 6.185114 AGAAAGCTATGTGGCTGATTATCT 57.815 37.500 0.00 0.00 42.24 1.98
2406 2564 6.599445 AGAAAGCTATGTGGCTGATTATCTT 58.401 36.000 0.00 0.00 42.24 2.40
2407 2565 6.485984 AGAAAGCTATGTGGCTGATTATCTTG 59.514 38.462 0.00 0.00 42.24 3.02
2408 2566 5.301835 AGCTATGTGGCTGATTATCTTGT 57.698 39.130 0.00 0.00 41.43 3.16
2409 2567 6.425210 AGCTATGTGGCTGATTATCTTGTA 57.575 37.500 0.00 0.00 41.43 2.41
2410 2568 6.226787 AGCTATGTGGCTGATTATCTTGTAC 58.773 40.000 0.00 0.00 41.43 2.90
2411 2569 5.991606 GCTATGTGGCTGATTATCTTGTACA 59.008 40.000 0.00 0.00 0.00 2.90
2412 2570 6.652481 GCTATGTGGCTGATTATCTTGTACAT 59.348 38.462 0.00 0.00 0.00 2.29
2413 2571 7.148507 GCTATGTGGCTGATTATCTTGTACATC 60.149 40.741 0.00 0.00 0.00 3.06
2414 2572 5.368145 TGTGGCTGATTATCTTGTACATCC 58.632 41.667 0.00 0.00 0.00 3.51
2415 2573 5.130975 TGTGGCTGATTATCTTGTACATCCT 59.869 40.000 0.00 0.00 0.00 3.24
2416 2574 6.326323 TGTGGCTGATTATCTTGTACATCCTA 59.674 38.462 0.00 0.00 0.00 2.94
2417 2575 7.147567 TGTGGCTGATTATCTTGTACATCCTAA 60.148 37.037 0.00 0.00 0.00 2.69
2418 2576 7.386299 GTGGCTGATTATCTTGTACATCCTAAG 59.614 40.741 0.00 0.00 0.00 2.18
2419 2577 6.876257 GGCTGATTATCTTGTACATCCTAAGG 59.124 42.308 0.00 0.00 0.00 2.69
2420 2578 7.445945 GCTGATTATCTTGTACATCCTAAGGT 58.554 38.462 0.00 0.00 0.00 3.50
2421 2579 7.600752 GCTGATTATCTTGTACATCCTAAGGTC 59.399 40.741 0.00 0.00 0.00 3.85
2422 2580 8.783660 TGATTATCTTGTACATCCTAAGGTCT 57.216 34.615 0.00 0.00 0.00 3.85
2423 2581 9.877222 TGATTATCTTGTACATCCTAAGGTCTA 57.123 33.333 0.00 0.00 0.00 2.59
2426 2584 6.978674 TCTTGTACATCCTAAGGTCTATGG 57.021 41.667 0.00 0.00 0.00 2.74
2427 2585 5.839063 TCTTGTACATCCTAAGGTCTATGGG 59.161 44.000 0.00 0.00 0.00 4.00
2428 2586 4.489737 TGTACATCCTAAGGTCTATGGGG 58.510 47.826 0.00 0.00 0.00 4.96
2429 2587 4.171243 TGTACATCCTAAGGTCTATGGGGA 59.829 45.833 0.00 0.00 0.00 4.81
2430 2588 3.588569 ACATCCTAAGGTCTATGGGGAC 58.411 50.000 0.00 0.00 35.66 4.46
2431 2589 2.376695 TCCTAAGGTCTATGGGGACG 57.623 55.000 0.00 0.00 37.12 4.79
2432 2590 1.572415 TCCTAAGGTCTATGGGGACGT 59.428 52.381 0.00 0.00 37.12 4.34
2433 2591 1.687123 CCTAAGGTCTATGGGGACGTG 59.313 57.143 0.00 0.00 37.12 4.49
2434 2592 1.687123 CTAAGGTCTATGGGGACGTGG 59.313 57.143 0.00 0.00 37.12 4.94
2435 2593 0.042131 AAGGTCTATGGGGACGTGGA 59.958 55.000 0.00 0.00 37.12 4.02
2436 2594 0.397254 AGGTCTATGGGGACGTGGAG 60.397 60.000 0.00 0.00 37.53 3.86
2437 2595 1.442148 GTCTATGGGGACGTGGAGC 59.558 63.158 0.00 0.00 37.53 4.70
2438 2596 1.001120 TCTATGGGGACGTGGAGCA 59.999 57.895 0.00 0.00 31.11 4.26
2439 2597 0.398522 TCTATGGGGACGTGGAGCAT 60.399 55.000 0.00 0.00 31.11 3.79
2440 2598 0.469917 CTATGGGGACGTGGAGCATT 59.530 55.000 0.00 0.00 0.00 3.56
2441 2599 0.916086 TATGGGGACGTGGAGCATTT 59.084 50.000 0.00 0.00 0.00 2.32
2442 2600 0.039618 ATGGGGACGTGGAGCATTTT 59.960 50.000 0.00 0.00 0.00 1.82
2443 2601 0.893270 TGGGGACGTGGAGCATTTTG 60.893 55.000 0.00 0.00 0.00 2.44
2444 2602 1.595093 GGGGACGTGGAGCATTTTGG 61.595 60.000 0.00 0.00 0.00 3.28
2445 2603 0.893727 GGGACGTGGAGCATTTTGGT 60.894 55.000 0.00 0.00 0.00 3.67
2446 2604 0.958822 GGACGTGGAGCATTTTGGTT 59.041 50.000 0.00 0.00 0.00 3.67
2447 2605 1.335872 GGACGTGGAGCATTTTGGTTG 60.336 52.381 0.00 0.00 0.00 3.77
2448 2606 0.673437 ACGTGGAGCATTTTGGTTGG 59.327 50.000 0.00 0.00 0.00 3.77
2449 2607 0.958091 CGTGGAGCATTTTGGTTGGA 59.042 50.000 0.00 0.00 0.00 3.53
2450 2608 1.335872 CGTGGAGCATTTTGGTTGGAC 60.336 52.381 0.00 0.00 0.00 4.02
2451 2609 1.963515 GTGGAGCATTTTGGTTGGACT 59.036 47.619 0.00 0.00 0.00 3.85
2452 2610 3.153919 GTGGAGCATTTTGGTTGGACTA 58.846 45.455 0.00 0.00 0.00 2.59
2453 2611 3.057526 GTGGAGCATTTTGGTTGGACTAC 60.058 47.826 0.00 0.00 0.00 2.73
2454 2612 2.492088 GGAGCATTTTGGTTGGACTACC 59.508 50.000 0.00 0.00 38.73 3.18
2455 2613 2.159382 AGCATTTTGGTTGGACTACCG 58.841 47.619 0.00 0.00 41.28 4.02
2456 2614 2.156098 GCATTTTGGTTGGACTACCGA 58.844 47.619 0.00 0.00 41.28 4.69
2457 2615 2.554893 GCATTTTGGTTGGACTACCGAA 59.445 45.455 2.11 2.11 41.28 4.30
2458 2616 3.365969 GCATTTTGGTTGGACTACCGAAG 60.366 47.826 5.89 0.00 41.46 3.79
2459 2617 3.842007 TTTTGGTTGGACTACCGAAGA 57.158 42.857 5.89 0.00 41.46 2.87
2460 2618 3.842007 TTTGGTTGGACTACCGAAGAA 57.158 42.857 2.11 0.00 41.28 2.52
2461 2619 3.396260 TTGGTTGGACTACCGAAGAAG 57.604 47.619 0.00 0.00 41.28 2.85
2462 2620 2.600790 TGGTTGGACTACCGAAGAAGA 58.399 47.619 0.00 0.00 41.28 2.87
2463 2621 2.967201 TGGTTGGACTACCGAAGAAGAA 59.033 45.455 0.00 0.00 41.28 2.52
2464 2622 3.006537 TGGTTGGACTACCGAAGAAGAAG 59.993 47.826 0.00 0.00 41.28 2.85
2465 2623 3.257624 GGTTGGACTACCGAAGAAGAAGA 59.742 47.826 0.00 0.00 39.42 2.87
2466 2624 4.487019 GTTGGACTACCGAAGAAGAAGAG 58.513 47.826 0.00 0.00 39.42 2.85
2467 2625 3.090037 TGGACTACCGAAGAAGAAGAGG 58.910 50.000 0.00 0.00 39.42 3.69
2468 2626 3.245158 TGGACTACCGAAGAAGAAGAGGA 60.245 47.826 0.00 0.00 39.42 3.71
2469 2627 3.129113 GGACTACCGAAGAAGAAGAGGAC 59.871 52.174 0.00 0.00 0.00 3.85
2470 2628 4.011698 GACTACCGAAGAAGAAGAGGACT 58.988 47.826 0.00 0.00 0.00 3.85
2471 2629 5.176741 ACTACCGAAGAAGAAGAGGACTA 57.823 43.478 0.00 0.00 0.00 2.59
2472 2630 5.757988 ACTACCGAAGAAGAAGAGGACTAT 58.242 41.667 0.00 0.00 0.00 2.12
2473 2631 4.993029 ACCGAAGAAGAAGAGGACTATG 57.007 45.455 0.00 0.00 0.00 2.23
2474 2632 4.601084 ACCGAAGAAGAAGAGGACTATGA 58.399 43.478 0.00 0.00 0.00 2.15
2475 2633 5.017490 ACCGAAGAAGAAGAGGACTATGAA 58.983 41.667 0.00 0.00 0.00 2.57
2476 2634 5.105675 ACCGAAGAAGAAGAGGACTATGAAC 60.106 44.000 0.00 0.00 0.00 3.18
2477 2635 5.344884 CGAAGAAGAAGAGGACTATGAACC 58.655 45.833 0.00 0.00 0.00 3.62
2478 2636 5.126384 CGAAGAAGAAGAGGACTATGAACCT 59.874 44.000 0.00 0.00 39.41 3.50
2479 2637 6.319152 CGAAGAAGAAGAGGACTATGAACCTA 59.681 42.308 0.00 0.00 36.57 3.08
2480 2638 7.148052 CGAAGAAGAAGAGGACTATGAACCTAA 60.148 40.741 0.00 0.00 36.57 2.69
2481 2639 7.654022 AGAAGAAGAGGACTATGAACCTAAG 57.346 40.000 0.00 0.00 36.57 2.18
2482 2640 6.609616 AGAAGAAGAGGACTATGAACCTAAGG 59.390 42.308 0.00 0.00 36.57 2.69
2483 2641 5.212745 AGAAGAGGACTATGAACCTAAGGG 58.787 45.833 0.00 0.00 36.57 3.95
2484 2642 4.901785 AGAGGACTATGAACCTAAGGGA 57.098 45.455 0.00 0.00 36.57 4.20
2485 2643 5.222278 AGAGGACTATGAACCTAAGGGAA 57.778 43.478 0.00 0.00 36.57 3.97
2486 2644 5.600749 AGAGGACTATGAACCTAAGGGAAA 58.399 41.667 0.00 0.00 36.57 3.13
2487 2645 5.663556 AGAGGACTATGAACCTAAGGGAAAG 59.336 44.000 0.00 0.00 36.57 2.62
2488 2646 4.722279 AGGACTATGAACCTAAGGGAAAGG 59.278 45.833 0.00 0.00 40.20 3.11
2489 2647 4.720273 GGACTATGAACCTAAGGGAAAGGA 59.280 45.833 0.00 0.00 37.57 3.36
2490 2648 5.163290 GGACTATGAACCTAAGGGAAAGGAG 60.163 48.000 0.00 0.00 37.57 3.69
2491 2649 4.722279 ACTATGAACCTAAGGGAAAGGAGG 59.278 45.833 0.00 0.00 37.57 4.30
2492 2650 3.285290 TGAACCTAAGGGAAAGGAGGA 57.715 47.619 0.00 0.00 37.57 3.71
2493 2651 3.182152 TGAACCTAAGGGAAAGGAGGAG 58.818 50.000 0.00 0.00 37.57 3.69
2494 2652 3.181399 TGAACCTAAGGGAAAGGAGGAGA 60.181 47.826 0.00 0.00 37.57 3.71
2495 2653 2.835389 ACCTAAGGGAAAGGAGGAGAC 58.165 52.381 0.00 0.00 37.57 3.36
2496 2654 1.757699 CCTAAGGGAAAGGAGGAGACG 59.242 57.143 0.00 0.00 36.08 4.18
2497 2655 2.623502 CCTAAGGGAAAGGAGGAGACGA 60.624 54.545 0.00 0.00 36.08 4.20
2498 2656 1.562783 AAGGGAAAGGAGGAGACGAG 58.437 55.000 0.00 0.00 0.00 4.18
2499 2657 0.973496 AGGGAAAGGAGGAGACGAGC 60.973 60.000 0.00 0.00 0.00 5.03
2500 2658 0.973496 GGGAAAGGAGGAGACGAGCT 60.973 60.000 0.00 0.00 0.00 4.09
2501 2659 0.458260 GGAAAGGAGGAGACGAGCTC 59.542 60.000 2.73 2.73 43.17 4.09
2502 2660 1.178276 GAAAGGAGGAGACGAGCTCA 58.822 55.000 15.40 0.00 45.81 4.26
2503 2661 1.134175 GAAAGGAGGAGACGAGCTCAG 59.866 57.143 15.40 9.21 45.81 3.35
2504 2662 0.329931 AAGGAGGAGACGAGCTCAGA 59.670 55.000 15.40 0.00 45.81 3.27
2505 2663 0.550914 AGGAGGAGACGAGCTCAGAT 59.449 55.000 15.40 0.00 45.81 2.90
2506 2664 0.667993 GGAGGAGACGAGCTCAGATG 59.332 60.000 15.40 0.00 45.81 2.90
2507 2665 1.674359 GAGGAGACGAGCTCAGATGA 58.326 55.000 15.40 0.00 45.81 2.92
2508 2666 2.020720 GAGGAGACGAGCTCAGATGAA 58.979 52.381 15.40 0.00 45.81 2.57
2509 2667 2.023673 AGGAGACGAGCTCAGATGAAG 58.976 52.381 15.40 0.00 45.81 3.02
2510 2668 2.020720 GGAGACGAGCTCAGATGAAGA 58.979 52.381 15.40 0.00 45.81 2.87
2511 2669 2.622942 GGAGACGAGCTCAGATGAAGAT 59.377 50.000 15.40 0.00 45.81 2.40
2512 2670 3.550639 GGAGACGAGCTCAGATGAAGATG 60.551 52.174 15.40 0.00 45.81 2.90
2513 2671 3.286353 AGACGAGCTCAGATGAAGATGA 58.714 45.455 15.40 0.00 0.00 2.92
2514 2672 3.698539 AGACGAGCTCAGATGAAGATGAA 59.301 43.478 15.40 0.00 0.00 2.57
2515 2673 4.159321 AGACGAGCTCAGATGAAGATGAAA 59.841 41.667 15.40 0.00 0.00 2.69
2516 2674 5.021033 ACGAGCTCAGATGAAGATGAAAT 57.979 39.130 15.40 0.00 0.00 2.17
2517 2675 5.049167 ACGAGCTCAGATGAAGATGAAATC 58.951 41.667 15.40 0.00 46.04 2.17
2531 2689 5.774498 GATGAAATCCCATTACCTCAACC 57.226 43.478 0.00 0.00 37.38 3.77
2532 2690 4.946160 TGAAATCCCATTACCTCAACCT 57.054 40.909 0.00 0.00 0.00 3.50
2533 2691 6.590656 ATGAAATCCCATTACCTCAACCTA 57.409 37.500 0.00 0.00 0.00 3.08
2534 2692 6.590656 TGAAATCCCATTACCTCAACCTAT 57.409 37.500 0.00 0.00 0.00 2.57
2535 2693 6.364701 TGAAATCCCATTACCTCAACCTATG 58.635 40.000 0.00 0.00 0.00 2.23
2536 2694 5.324832 AATCCCATTACCTCAACCTATGG 57.675 43.478 0.00 0.00 36.38 2.74
2537 2695 4.015617 TCCCATTACCTCAACCTATGGA 57.984 45.455 0.00 0.00 38.39 3.41
2538 2696 4.577096 TCCCATTACCTCAACCTATGGAT 58.423 43.478 0.00 0.00 38.39 3.41
2539 2697 5.733000 TCCCATTACCTCAACCTATGGATA 58.267 41.667 0.00 0.00 38.39 2.59
2540 2698 6.339220 TCCCATTACCTCAACCTATGGATAT 58.661 40.000 0.00 0.00 38.39 1.63
2541 2699 6.215431 TCCCATTACCTCAACCTATGGATATG 59.785 42.308 0.00 0.00 38.39 1.78
2542 2700 5.882557 CCATTACCTCAACCTATGGATATGC 59.117 44.000 0.00 0.00 38.39 3.14
2543 2701 6.475504 CATTACCTCAACCTATGGATATGCA 58.524 40.000 0.00 0.00 0.00 3.96
2544 2702 6.702449 TTACCTCAACCTATGGATATGCAT 57.298 37.500 14.59 14.59 0.00 3.96
2545 2703 4.914983 ACCTCAACCTATGGATATGCATG 58.085 43.478 19.03 6.50 0.00 4.06
2546 2704 4.352001 ACCTCAACCTATGGATATGCATGT 59.648 41.667 19.03 1.23 0.00 3.21
2547 2705 4.698780 CCTCAACCTATGGATATGCATGTG 59.301 45.833 19.03 11.99 0.00 3.21
2548 2706 4.654915 TCAACCTATGGATATGCATGTGG 58.345 43.478 19.03 20.24 0.00 4.17
2549 2707 4.350520 TCAACCTATGGATATGCATGTGGA 59.649 41.667 26.04 15.49 0.00 4.02
2550 2708 4.564782 ACCTATGGATATGCATGTGGAG 57.435 45.455 26.04 14.62 0.00 3.86
2551 2709 3.912528 ACCTATGGATATGCATGTGGAGT 59.087 43.478 26.04 12.79 0.00 3.85
2552 2710 4.352001 ACCTATGGATATGCATGTGGAGTT 59.648 41.667 26.04 10.47 0.00 3.01
2553 2711 4.940046 CCTATGGATATGCATGTGGAGTTC 59.060 45.833 19.03 0.00 0.00 3.01
2554 2712 3.929955 TGGATATGCATGTGGAGTTCA 57.070 42.857 10.16 0.00 0.00 3.18
2555 2713 4.233632 TGGATATGCATGTGGAGTTCAA 57.766 40.909 10.16 0.00 0.00 2.69
2556 2714 4.598022 TGGATATGCATGTGGAGTTCAAA 58.402 39.130 10.16 0.00 0.00 2.69
2557 2715 5.015515 TGGATATGCATGTGGAGTTCAAAA 58.984 37.500 10.16 0.00 0.00 2.44
2558 2716 5.479724 TGGATATGCATGTGGAGTTCAAAAA 59.520 36.000 10.16 0.00 0.00 1.94
2559 2717 6.038356 GGATATGCATGTGGAGTTCAAAAAG 58.962 40.000 10.16 0.00 0.00 2.27
2560 2718 4.942761 ATGCATGTGGAGTTCAAAAAGT 57.057 36.364 0.00 0.00 0.00 2.66
2561 2719 4.305989 TGCATGTGGAGTTCAAAAAGTC 57.694 40.909 0.00 0.00 34.59 3.01
2562 2720 3.698539 TGCATGTGGAGTTCAAAAAGTCA 59.301 39.130 0.00 0.00 36.68 3.41
2563 2721 4.159321 TGCATGTGGAGTTCAAAAAGTCAA 59.841 37.500 0.00 0.00 36.68 3.18
2564 2722 4.741676 GCATGTGGAGTTCAAAAAGTCAAG 59.258 41.667 0.00 0.00 36.68 3.02
2565 2723 4.370364 TGTGGAGTTCAAAAAGTCAAGC 57.630 40.909 0.00 0.00 36.68 4.01
2566 2724 3.130340 TGTGGAGTTCAAAAAGTCAAGCC 59.870 43.478 0.00 0.00 36.68 4.35
2567 2725 3.381590 GTGGAGTTCAAAAAGTCAAGCCT 59.618 43.478 0.00 0.00 36.68 4.58
2568 2726 3.632145 TGGAGTTCAAAAAGTCAAGCCTC 59.368 43.478 0.00 0.00 36.68 4.70
2569 2727 3.004839 GGAGTTCAAAAAGTCAAGCCTCC 59.995 47.826 0.00 0.00 36.68 4.30
2570 2728 2.959030 AGTTCAAAAAGTCAAGCCTCCC 59.041 45.455 0.00 0.00 0.00 4.30
2571 2729 2.959030 GTTCAAAAAGTCAAGCCTCCCT 59.041 45.455 0.00 0.00 0.00 4.20
2572 2730 2.586425 TCAAAAAGTCAAGCCTCCCTG 58.414 47.619 0.00 0.00 0.00 4.45
2573 2731 2.174639 TCAAAAAGTCAAGCCTCCCTGA 59.825 45.455 0.00 0.00 0.00 3.86
2574 2732 3.160269 CAAAAAGTCAAGCCTCCCTGAT 58.840 45.455 0.00 0.00 0.00 2.90
2575 2733 4.042809 TCAAAAAGTCAAGCCTCCCTGATA 59.957 41.667 0.00 0.00 0.00 2.15
2576 2734 3.922171 AAAGTCAAGCCTCCCTGATAG 57.078 47.619 0.00 0.00 0.00 2.08
2577 2735 2.856760 AGTCAAGCCTCCCTGATAGA 57.143 50.000 0.00 0.00 0.00 1.98
2578 2736 2.676748 AGTCAAGCCTCCCTGATAGAG 58.323 52.381 0.00 0.00 0.00 2.43
2579 2737 1.069978 GTCAAGCCTCCCTGATAGAGC 59.930 57.143 0.00 0.00 0.00 4.09
2580 2738 1.126488 CAAGCCTCCCTGATAGAGCA 58.874 55.000 0.00 0.00 0.00 4.26
2581 2739 1.487976 CAAGCCTCCCTGATAGAGCAA 59.512 52.381 0.00 0.00 0.00 3.91
2582 2740 1.885049 AGCCTCCCTGATAGAGCAAA 58.115 50.000 0.00 0.00 0.00 3.68
2583 2741 1.767681 AGCCTCCCTGATAGAGCAAAG 59.232 52.381 0.00 0.00 0.00 2.77
2584 2742 1.765314 GCCTCCCTGATAGAGCAAAGA 59.235 52.381 0.00 0.00 0.00 2.52
2585 2743 2.171448 GCCTCCCTGATAGAGCAAAGAA 59.829 50.000 0.00 0.00 0.00 2.52
2586 2744 3.370953 GCCTCCCTGATAGAGCAAAGAAA 60.371 47.826 0.00 0.00 0.00 2.52
2587 2745 4.195416 CCTCCCTGATAGAGCAAAGAAAC 58.805 47.826 0.00 0.00 0.00 2.78
2588 2746 4.195416 CTCCCTGATAGAGCAAAGAAACC 58.805 47.826 0.00 0.00 0.00 3.27
2589 2747 3.846588 TCCCTGATAGAGCAAAGAAACCT 59.153 43.478 0.00 0.00 0.00 3.50
2590 2748 5.030147 TCCCTGATAGAGCAAAGAAACCTA 58.970 41.667 0.00 0.00 0.00 3.08
2591 2749 5.487488 TCCCTGATAGAGCAAAGAAACCTAA 59.513 40.000 0.00 0.00 0.00 2.69
2592 2750 5.819901 CCCTGATAGAGCAAAGAAACCTAAG 59.180 44.000 0.00 0.00 0.00 2.18
2593 2751 6.352222 CCCTGATAGAGCAAAGAAACCTAAGA 60.352 42.308 0.00 0.00 0.00 2.10
2594 2752 7.278875 CCTGATAGAGCAAAGAAACCTAAGAT 58.721 38.462 0.00 0.00 0.00 2.40
2595 2753 7.440856 CCTGATAGAGCAAAGAAACCTAAGATC 59.559 40.741 0.00 0.00 0.00 2.75
2596 2754 6.980978 TGATAGAGCAAAGAAACCTAAGATCG 59.019 38.462 0.00 0.00 0.00 3.69
2597 2755 5.407407 AGAGCAAAGAAACCTAAGATCGA 57.593 39.130 0.00 0.00 0.00 3.59
2598 2756 5.415221 AGAGCAAAGAAACCTAAGATCGAG 58.585 41.667 0.00 0.00 0.00 4.04
2599 2757 5.046950 AGAGCAAAGAAACCTAAGATCGAGT 60.047 40.000 0.00 0.00 0.00 4.18
2600 2758 5.552178 AGCAAAGAAACCTAAGATCGAGTT 58.448 37.500 0.00 0.00 0.00 3.01
2601 2759 5.998363 AGCAAAGAAACCTAAGATCGAGTTT 59.002 36.000 0.00 0.00 35.24 2.66
2602 2760 7.159372 AGCAAAGAAACCTAAGATCGAGTTTA 58.841 34.615 0.00 0.00 32.80 2.01
2603 2761 7.824779 AGCAAAGAAACCTAAGATCGAGTTTAT 59.175 33.333 0.00 0.00 32.80 1.40
2604 2762 8.117370 GCAAAGAAACCTAAGATCGAGTTTATC 58.883 37.037 0.00 0.00 32.80 1.75
2605 2763 8.604890 CAAAGAAACCTAAGATCGAGTTTATCC 58.395 37.037 0.00 0.00 32.80 2.59
2606 2764 6.818233 AGAAACCTAAGATCGAGTTTATCCC 58.182 40.000 0.00 0.00 32.80 3.85
2607 2765 6.612049 AGAAACCTAAGATCGAGTTTATCCCT 59.388 38.462 0.00 0.00 32.80 4.20
2608 2766 6.809976 AACCTAAGATCGAGTTTATCCCTT 57.190 37.500 0.00 0.00 0.00 3.95
2609 2767 6.809976 ACCTAAGATCGAGTTTATCCCTTT 57.190 37.500 0.00 0.00 0.00 3.11
2610 2768 7.196637 ACCTAAGATCGAGTTTATCCCTTTT 57.803 36.000 0.00 0.00 0.00 2.27
2611 2769 7.273712 ACCTAAGATCGAGTTTATCCCTTTTC 58.726 38.462 0.00 0.00 0.00 2.29
2612 2770 6.421202 CCTAAGATCGAGTTTATCCCTTTTCG 59.579 42.308 0.00 0.00 0.00 3.46
2613 2771 4.120589 AGATCGAGTTTATCCCTTTTCGC 58.879 43.478 0.00 0.00 0.00 4.70
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 50 2.378038 ACACAGCCACATGTTTGACTT 58.622 42.857 0.00 0.00 0.00 3.01
50 51 2.057137 ACACAGCCACATGTTTGACT 57.943 45.000 0.00 0.00 0.00 3.41
51 52 3.315191 ACTTACACAGCCACATGTTTGAC 59.685 43.478 0.00 0.00 0.00 3.18
52 53 3.550820 ACTTACACAGCCACATGTTTGA 58.449 40.909 0.00 0.00 0.00 2.69
53 54 3.314913 TGACTTACACAGCCACATGTTTG 59.685 43.478 0.00 0.00 0.00 2.93
54 55 3.550820 TGACTTACACAGCCACATGTTT 58.449 40.909 0.00 0.00 0.00 2.83
55 56 3.207265 TGACTTACACAGCCACATGTT 57.793 42.857 0.00 0.00 0.00 2.71
56 57 2.928801 TGACTTACACAGCCACATGT 57.071 45.000 0.00 0.00 0.00 3.21
57 58 3.314913 TGTTTGACTTACACAGCCACATG 59.685 43.478 0.00 0.00 0.00 3.21
58 59 3.550820 TGTTTGACTTACACAGCCACAT 58.449 40.909 0.00 0.00 0.00 3.21
59 60 2.992593 TGTTTGACTTACACAGCCACA 58.007 42.857 0.00 0.00 0.00 4.17
60 61 3.315191 ACATGTTTGACTTACACAGCCAC 59.685 43.478 0.00 0.00 0.00 5.01
61 62 3.314913 CACATGTTTGACTTACACAGCCA 59.685 43.478 0.00 0.00 0.00 4.75
62 63 3.563808 TCACATGTTTGACTTACACAGCC 59.436 43.478 0.00 0.00 0.00 4.85
63 64 4.811555 TCACATGTTTGACTTACACAGC 57.188 40.909 0.00 0.00 0.00 4.40
64 65 8.939929 AGATTATCACATGTTTGACTTACACAG 58.060 33.333 0.00 0.00 0.00 3.66
65 66 8.720562 CAGATTATCACATGTTTGACTTACACA 58.279 33.333 0.00 0.00 0.00 3.72
66 67 8.177663 CCAGATTATCACATGTTTGACTTACAC 58.822 37.037 0.00 0.00 0.00 2.90
67 68 8.100164 TCCAGATTATCACATGTTTGACTTACA 58.900 33.333 0.00 0.00 0.00 2.41
84 85 6.066032 TCATGACAATGCACATCCAGATTAT 58.934 36.000 0.00 0.00 33.47 1.28
85 86 5.438833 TCATGACAATGCACATCCAGATTA 58.561 37.500 0.00 0.00 33.47 1.75
86 87 4.274978 TCATGACAATGCACATCCAGATT 58.725 39.130 0.00 0.00 33.47 2.40
87 88 3.883489 CTCATGACAATGCACATCCAGAT 59.117 43.478 0.00 0.00 33.47 2.90
127 128 7.176515 ACATGGATGCAAGAGTTTACATTAACA 59.823 33.333 0.00 0.00 0.00 2.41
298 299 5.710513 TTGAAGCTGACTTACAATTGCAT 57.289 34.783 5.05 0.00 35.82 3.96
581 589 5.124457 GGTCACATGTCAAAGTGATTATGCT 59.876 40.000 12.80 0.00 45.46 3.79
1528 1553 2.686915 GACCTTGCATCTCCAAATCCAG 59.313 50.000 0.00 0.00 0.00 3.86
1561 1587 6.327365 AGAAAAGAGGAACAACATCCCAAATT 59.673 34.615 0.00 0.00 40.59 1.82
1739 1800 6.127111 TGCACATCAGCCCATTAAAATTATGT 60.127 34.615 0.00 0.00 0.00 2.29
1838 1906 0.114168 TGGGCCCATTTTACTGCAGT 59.886 50.000 24.45 25.12 0.00 4.40
1963 2099 3.044059 GAGCTGATGTGGCGCCAAC 62.044 63.158 34.66 24.92 34.52 3.77
1964 2100 2.747460 GAGCTGATGTGGCGCCAA 60.747 61.111 34.66 21.87 34.52 4.52
1965 2101 4.783621 GGAGCTGATGTGGCGCCA 62.784 66.667 29.03 29.03 46.34 5.69
1967 2103 3.200593 CTGGAGCTGATGTGGCGC 61.201 66.667 0.00 0.00 34.52 6.53
1968 2104 2.513204 CCTGGAGCTGATGTGGCG 60.513 66.667 0.00 0.00 34.52 5.69
1969 2105 2.827642 GCCTGGAGCTGATGTGGC 60.828 66.667 0.00 0.00 38.99 5.01
2022 2180 1.750018 TGTGGCATCTCCCGCAATG 60.750 57.895 0.00 0.00 42.08 2.82
2147 2305 9.938280 ATTTTCATTTCTGTCATGAATTGTGAT 57.062 25.926 0.00 0.00 39.76 3.06
2258 2416 3.182173 GTCCGTCACAAACATGCAAAATG 59.818 43.478 0.00 0.00 0.00 2.32
2318 2476 4.016444 AGGAACAGCTCAAAACAAGAACA 58.984 39.130 0.00 0.00 0.00 3.18
2319 2477 4.354587 CAGGAACAGCTCAAAACAAGAAC 58.645 43.478 0.00 0.00 0.00 3.01
2320 2478 3.181487 GCAGGAACAGCTCAAAACAAGAA 60.181 43.478 0.00 0.00 38.05 2.52
2321 2479 2.358898 GCAGGAACAGCTCAAAACAAGA 59.641 45.455 0.00 0.00 38.05 3.02
2322 2480 2.735823 GCAGGAACAGCTCAAAACAAG 58.264 47.619 0.00 0.00 38.05 3.16
2323 2481 2.869233 GCAGGAACAGCTCAAAACAA 57.131 45.000 0.00 0.00 38.05 2.83
2332 2490 3.782046 TCTAATCGTTAGCAGGAACAGC 58.218 45.455 0.00 0.00 42.86 4.40
2333 2491 5.250235 TCTCTAATCGTTAGCAGGAACAG 57.750 43.478 0.00 0.00 33.23 3.16
2334 2492 5.654603 TTCTCTAATCGTTAGCAGGAACA 57.345 39.130 0.00 0.00 33.23 3.18
2335 2493 8.704234 CATATTTCTCTAATCGTTAGCAGGAAC 58.296 37.037 0.00 0.00 33.23 3.62
2336 2494 8.421784 ACATATTTCTCTAATCGTTAGCAGGAA 58.578 33.333 0.00 0.00 33.23 3.36
2337 2495 7.952671 ACATATTTCTCTAATCGTTAGCAGGA 58.047 34.615 0.00 0.00 33.23 3.86
2338 2496 7.061210 CGACATATTTCTCTAATCGTTAGCAGG 59.939 40.741 0.00 0.00 33.23 4.85
2339 2497 7.591795 ACGACATATTTCTCTAATCGTTAGCAG 59.408 37.037 0.00 1.50 33.23 4.24
2340 2498 7.423199 ACGACATATTTCTCTAATCGTTAGCA 58.577 34.615 0.00 0.00 33.23 3.49
2341 2499 7.060864 GGACGACATATTTCTCTAATCGTTAGC 59.939 40.741 0.00 0.00 33.23 3.09
2342 2500 7.537991 GGGACGACATATTTCTCTAATCGTTAG 59.462 40.741 0.00 0.10 34.52 2.34
2343 2501 7.013559 TGGGACGACATATTTCTCTAATCGTTA 59.986 37.037 0.00 0.00 0.00 3.18
2344 2502 6.183360 TGGGACGACATATTTCTCTAATCGTT 60.183 38.462 0.00 0.00 0.00 3.85
2345 2503 5.301045 TGGGACGACATATTTCTCTAATCGT 59.699 40.000 0.00 0.00 0.00 3.73
2346 2504 5.769367 TGGGACGACATATTTCTCTAATCG 58.231 41.667 0.00 0.00 0.00 3.34
2347 2505 6.015350 TCCTGGGACGACATATTTCTCTAATC 60.015 42.308 0.00 0.00 0.00 1.75
2348 2506 5.839063 TCCTGGGACGACATATTTCTCTAAT 59.161 40.000 0.00 0.00 0.00 1.73
2349 2507 5.205821 TCCTGGGACGACATATTTCTCTAA 58.794 41.667 0.00 0.00 0.00 2.10
2350 2508 4.800023 TCCTGGGACGACATATTTCTCTA 58.200 43.478 0.00 0.00 0.00 2.43
2351 2509 3.643237 TCCTGGGACGACATATTTCTCT 58.357 45.455 0.00 0.00 0.00 3.10
2352 2510 4.608948 ATCCTGGGACGACATATTTCTC 57.391 45.455 0.00 0.00 0.00 2.87
2353 2511 4.501571 CGAATCCTGGGACGACATATTTCT 60.502 45.833 0.00 0.00 0.00 2.52
2354 2512 3.741344 CGAATCCTGGGACGACATATTTC 59.259 47.826 0.00 0.00 0.00 2.17
2355 2513 3.494398 CCGAATCCTGGGACGACATATTT 60.494 47.826 0.00 0.00 0.00 1.40
2356 2514 2.037251 CCGAATCCTGGGACGACATATT 59.963 50.000 0.00 0.00 0.00 1.28
2357 2515 1.618837 CCGAATCCTGGGACGACATAT 59.381 52.381 0.00 0.00 0.00 1.78
2358 2516 1.037493 CCGAATCCTGGGACGACATA 58.963 55.000 0.00 0.00 0.00 2.29
2359 2517 0.686441 TCCGAATCCTGGGACGACAT 60.686 55.000 0.00 0.00 0.00 3.06
2360 2518 0.901114 TTCCGAATCCTGGGACGACA 60.901 55.000 0.00 0.00 30.46 4.35
2361 2519 0.179108 CTTCCGAATCCTGGGACGAC 60.179 60.000 0.00 0.00 30.46 4.34
2362 2520 1.327690 CCTTCCGAATCCTGGGACGA 61.328 60.000 0.00 0.00 30.46 4.20
2363 2521 1.144057 CCTTCCGAATCCTGGGACG 59.856 63.158 0.00 0.00 30.46 4.79
2364 2522 0.466124 CTCCTTCCGAATCCTGGGAC 59.534 60.000 0.00 0.00 30.46 4.46
2365 2523 0.338467 TCTCCTTCCGAATCCTGGGA 59.662 55.000 0.00 0.00 0.00 4.37
2366 2524 1.204146 TTCTCCTTCCGAATCCTGGG 58.796 55.000 0.00 0.00 0.00 4.45
2367 2525 2.911484 CTTTCTCCTTCCGAATCCTGG 58.089 52.381 0.00 0.00 0.00 4.45
2368 2526 2.093235 AGCTTTCTCCTTCCGAATCCTG 60.093 50.000 0.00 0.00 0.00 3.86
2369 2527 2.192263 AGCTTTCTCCTTCCGAATCCT 58.808 47.619 0.00 0.00 0.00 3.24
2370 2528 2.700722 AGCTTTCTCCTTCCGAATCC 57.299 50.000 0.00 0.00 0.00 3.01
2371 2529 4.509600 CACATAGCTTTCTCCTTCCGAATC 59.490 45.833 0.00 0.00 0.00 2.52
2372 2530 4.446371 CACATAGCTTTCTCCTTCCGAAT 58.554 43.478 0.00 0.00 0.00 3.34
2373 2531 3.369471 CCACATAGCTTTCTCCTTCCGAA 60.369 47.826 0.00 0.00 0.00 4.30
2374 2532 2.168521 CCACATAGCTTTCTCCTTCCGA 59.831 50.000 0.00 0.00 0.00 4.55
2375 2533 2.555199 CCACATAGCTTTCTCCTTCCG 58.445 52.381 0.00 0.00 0.00 4.30
2376 2534 2.092699 AGCCACATAGCTTTCTCCTTCC 60.093 50.000 0.00 0.00 41.41 3.46
2377 2535 2.941720 CAGCCACATAGCTTTCTCCTTC 59.058 50.000 0.00 0.00 42.61 3.46
2378 2536 2.573462 TCAGCCACATAGCTTTCTCCTT 59.427 45.455 0.00 0.00 42.61 3.36
2379 2537 2.191400 TCAGCCACATAGCTTTCTCCT 58.809 47.619 0.00 0.00 42.61 3.69
2380 2538 2.698855 TCAGCCACATAGCTTTCTCC 57.301 50.000 0.00 0.00 42.61 3.71
2381 2539 6.229733 AGATAATCAGCCACATAGCTTTCTC 58.770 40.000 0.00 0.00 42.61 2.87
2382 2540 6.185114 AGATAATCAGCCACATAGCTTTCT 57.815 37.500 0.00 0.00 42.61 2.52
2383 2541 6.261826 ACAAGATAATCAGCCACATAGCTTTC 59.738 38.462 0.00 0.00 42.61 2.62
2384 2542 6.125029 ACAAGATAATCAGCCACATAGCTTT 58.875 36.000 0.00 0.00 42.61 3.51
2385 2543 5.688807 ACAAGATAATCAGCCACATAGCTT 58.311 37.500 0.00 0.00 42.61 3.74
2386 2544 5.301835 ACAAGATAATCAGCCACATAGCT 57.698 39.130 0.00 0.00 46.45 3.32
2387 2545 5.991606 TGTACAAGATAATCAGCCACATAGC 59.008 40.000 0.00 0.00 0.00 2.97
2388 2546 7.332926 GGATGTACAAGATAATCAGCCACATAG 59.667 40.741 0.00 0.00 35.12 2.23
2389 2547 7.016563 AGGATGTACAAGATAATCAGCCACATA 59.983 37.037 0.00 0.00 37.09 2.29
2390 2548 6.000219 GGATGTACAAGATAATCAGCCACAT 59.000 40.000 0.00 0.00 35.12 3.21
2391 2549 5.130975 AGGATGTACAAGATAATCAGCCACA 59.869 40.000 0.00 0.00 37.09 4.17
2392 2550 5.615289 AGGATGTACAAGATAATCAGCCAC 58.385 41.667 0.00 0.00 37.09 5.01
2393 2551 5.894298 AGGATGTACAAGATAATCAGCCA 57.106 39.130 0.00 0.00 37.09 4.75
2394 2552 6.876257 CCTTAGGATGTACAAGATAATCAGCC 59.124 42.308 0.00 0.00 35.21 4.85
2395 2553 7.445945 ACCTTAGGATGTACAAGATAATCAGC 58.554 38.462 4.77 0.00 0.00 4.26
2396 2554 8.865090 AGACCTTAGGATGTACAAGATAATCAG 58.135 37.037 4.77 0.00 0.00 2.90
2397 2555 8.783660 AGACCTTAGGATGTACAAGATAATCA 57.216 34.615 4.77 0.00 0.00 2.57
2400 2558 9.090103 CCATAGACCTTAGGATGTACAAGATAA 57.910 37.037 4.77 0.00 0.00 1.75
2401 2559 7.674348 CCCATAGACCTTAGGATGTACAAGATA 59.326 40.741 4.77 0.00 0.00 1.98
2402 2560 6.498651 CCCATAGACCTTAGGATGTACAAGAT 59.501 42.308 4.77 0.00 0.00 2.40
2403 2561 5.839063 CCCATAGACCTTAGGATGTACAAGA 59.161 44.000 4.77 0.00 0.00 3.02
2404 2562 5.012148 CCCCATAGACCTTAGGATGTACAAG 59.988 48.000 4.77 0.00 0.00 3.16
2405 2563 4.905456 CCCCATAGACCTTAGGATGTACAA 59.095 45.833 4.77 0.00 0.00 2.41
2406 2564 4.171243 TCCCCATAGACCTTAGGATGTACA 59.829 45.833 4.77 0.00 0.00 2.90
2407 2565 4.527427 GTCCCCATAGACCTTAGGATGTAC 59.473 50.000 4.77 0.00 0.00 2.90
2408 2566 4.748701 GTCCCCATAGACCTTAGGATGTA 58.251 47.826 4.77 0.00 0.00 2.29
2409 2567 3.588569 GTCCCCATAGACCTTAGGATGT 58.411 50.000 4.77 0.00 0.00 3.06
2410 2568 2.563179 CGTCCCCATAGACCTTAGGATG 59.437 54.545 4.77 0.00 32.91 3.51
2411 2569 2.179424 ACGTCCCCATAGACCTTAGGAT 59.821 50.000 4.77 0.00 32.91 3.24
2412 2570 1.572415 ACGTCCCCATAGACCTTAGGA 59.428 52.381 4.77 0.00 32.91 2.94
2413 2571 1.687123 CACGTCCCCATAGACCTTAGG 59.313 57.143 0.00 0.00 32.91 2.69
2414 2572 1.687123 CCACGTCCCCATAGACCTTAG 59.313 57.143 0.00 0.00 32.91 2.18
2415 2573 1.288633 TCCACGTCCCCATAGACCTTA 59.711 52.381 0.00 0.00 32.91 2.69
2416 2574 0.042131 TCCACGTCCCCATAGACCTT 59.958 55.000 0.00 0.00 32.91 3.50
2417 2575 0.397254 CTCCACGTCCCCATAGACCT 60.397 60.000 0.00 0.00 32.91 3.85
2418 2576 2.029307 GCTCCACGTCCCCATAGACC 62.029 65.000 0.00 0.00 32.91 3.85
2419 2577 1.327690 TGCTCCACGTCCCCATAGAC 61.328 60.000 0.00 0.00 0.00 2.59
2420 2578 0.398522 ATGCTCCACGTCCCCATAGA 60.399 55.000 0.00 0.00 0.00 1.98
2421 2579 0.469917 AATGCTCCACGTCCCCATAG 59.530 55.000 0.00 0.00 0.00 2.23
2422 2580 0.916086 AAATGCTCCACGTCCCCATA 59.084 50.000 0.00 0.00 0.00 2.74
2423 2581 0.039618 AAAATGCTCCACGTCCCCAT 59.960 50.000 0.00 0.00 0.00 4.00
2424 2582 0.893270 CAAAATGCTCCACGTCCCCA 60.893 55.000 0.00 0.00 0.00 4.96
2425 2583 1.595093 CCAAAATGCTCCACGTCCCC 61.595 60.000 0.00 0.00 0.00 4.81
2426 2584 0.893727 ACCAAAATGCTCCACGTCCC 60.894 55.000 0.00 0.00 0.00 4.46
2427 2585 0.958822 AACCAAAATGCTCCACGTCC 59.041 50.000 0.00 0.00 0.00 4.79
2428 2586 1.335872 CCAACCAAAATGCTCCACGTC 60.336 52.381 0.00 0.00 0.00 4.34
2429 2587 0.673437 CCAACCAAAATGCTCCACGT 59.327 50.000 0.00 0.00 0.00 4.49
2430 2588 0.958091 TCCAACCAAAATGCTCCACG 59.042 50.000 0.00 0.00 0.00 4.94
2431 2589 1.963515 AGTCCAACCAAAATGCTCCAC 59.036 47.619 0.00 0.00 0.00 4.02
2432 2590 2.380064 AGTCCAACCAAAATGCTCCA 57.620 45.000 0.00 0.00 0.00 3.86
2433 2591 2.492088 GGTAGTCCAACCAAAATGCTCC 59.508 50.000 0.00 0.00 39.50 4.70
2434 2592 2.161609 CGGTAGTCCAACCAAAATGCTC 59.838 50.000 0.00 0.00 39.71 4.26
2435 2593 2.159382 CGGTAGTCCAACCAAAATGCT 58.841 47.619 0.00 0.00 39.71 3.79
2436 2594 2.156098 TCGGTAGTCCAACCAAAATGC 58.844 47.619 0.00 0.00 39.71 3.56
2437 2595 4.069304 TCTTCGGTAGTCCAACCAAAATG 58.931 43.478 0.00 0.00 39.71 2.32
2438 2596 4.360951 TCTTCGGTAGTCCAACCAAAAT 57.639 40.909 0.00 0.00 39.71 1.82
2439 2597 3.842007 TCTTCGGTAGTCCAACCAAAA 57.158 42.857 0.00 0.00 39.71 2.44
2440 2598 3.388676 TCTTCTTCGGTAGTCCAACCAAA 59.611 43.478 0.00 0.00 39.71 3.28
2441 2599 2.967201 TCTTCTTCGGTAGTCCAACCAA 59.033 45.455 0.00 0.00 39.71 3.67
2442 2600 2.600790 TCTTCTTCGGTAGTCCAACCA 58.399 47.619 0.00 0.00 39.71 3.67
2443 2601 3.257624 TCTTCTTCTTCGGTAGTCCAACC 59.742 47.826 0.00 0.00 36.08 3.77
2444 2602 4.487019 CTCTTCTTCTTCGGTAGTCCAAC 58.513 47.826 0.00 0.00 0.00 3.77
2445 2603 3.510360 CCTCTTCTTCTTCGGTAGTCCAA 59.490 47.826 0.00 0.00 0.00 3.53
2446 2604 3.090037 CCTCTTCTTCTTCGGTAGTCCA 58.910 50.000 0.00 0.00 0.00 4.02
2447 2605 3.129113 GTCCTCTTCTTCTTCGGTAGTCC 59.871 52.174 0.00 0.00 0.00 3.85
2448 2606 4.011698 AGTCCTCTTCTTCTTCGGTAGTC 58.988 47.826 0.00 0.00 0.00 2.59
2449 2607 4.036941 AGTCCTCTTCTTCTTCGGTAGT 57.963 45.455 0.00 0.00 0.00 2.73
2450 2608 5.823570 TCATAGTCCTCTTCTTCTTCGGTAG 59.176 44.000 0.00 0.00 0.00 3.18
2451 2609 5.752650 TCATAGTCCTCTTCTTCTTCGGTA 58.247 41.667 0.00 0.00 0.00 4.02
2452 2610 4.601084 TCATAGTCCTCTTCTTCTTCGGT 58.399 43.478 0.00 0.00 0.00 4.69
2453 2611 5.344884 GTTCATAGTCCTCTTCTTCTTCGG 58.655 45.833 0.00 0.00 0.00 4.30
2454 2612 5.126384 AGGTTCATAGTCCTCTTCTTCTTCG 59.874 44.000 0.00 0.00 0.00 3.79
2455 2613 6.538945 AGGTTCATAGTCCTCTTCTTCTTC 57.461 41.667 0.00 0.00 0.00 2.87
2456 2614 7.125053 CCTTAGGTTCATAGTCCTCTTCTTCTT 59.875 40.741 0.00 0.00 35.51 2.52
2457 2615 6.609616 CCTTAGGTTCATAGTCCTCTTCTTCT 59.390 42.308 0.00 0.00 35.51 2.85
2458 2616 6.183360 CCCTTAGGTTCATAGTCCTCTTCTTC 60.183 46.154 0.00 0.00 35.51 2.87
2459 2617 5.663556 CCCTTAGGTTCATAGTCCTCTTCTT 59.336 44.000 0.00 0.00 35.51 2.52
2460 2618 5.043281 TCCCTTAGGTTCATAGTCCTCTTCT 60.043 44.000 0.00 0.00 35.51 2.85
2461 2619 5.209659 TCCCTTAGGTTCATAGTCCTCTTC 58.790 45.833 0.00 0.00 35.51 2.87
2462 2620 5.222278 TCCCTTAGGTTCATAGTCCTCTT 57.778 43.478 0.00 0.00 35.51 2.85
2463 2621 4.901785 TCCCTTAGGTTCATAGTCCTCT 57.098 45.455 0.00 0.00 35.51 3.69
2464 2622 5.163290 CCTTTCCCTTAGGTTCATAGTCCTC 60.163 48.000 0.00 0.00 35.51 3.71
2465 2623 4.722279 CCTTTCCCTTAGGTTCATAGTCCT 59.278 45.833 0.00 0.00 37.80 3.85
2466 2624 4.720273 TCCTTTCCCTTAGGTTCATAGTCC 59.280 45.833 0.00 0.00 34.29 3.85
2467 2625 5.163290 CCTCCTTTCCCTTAGGTTCATAGTC 60.163 48.000 0.00 0.00 34.29 2.59
2468 2626 4.722279 CCTCCTTTCCCTTAGGTTCATAGT 59.278 45.833 0.00 0.00 34.29 2.12
2469 2627 4.969359 TCCTCCTTTCCCTTAGGTTCATAG 59.031 45.833 0.00 0.00 34.29 2.23
2470 2628 4.967871 TCCTCCTTTCCCTTAGGTTCATA 58.032 43.478 0.00 0.00 34.29 2.15
2471 2629 3.783082 CTCCTCCTTTCCCTTAGGTTCAT 59.217 47.826 0.00 0.00 34.29 2.57
2472 2630 3.181399 TCTCCTCCTTTCCCTTAGGTTCA 60.181 47.826 0.00 0.00 34.29 3.18
2473 2631 3.198200 GTCTCCTCCTTTCCCTTAGGTTC 59.802 52.174 0.00 0.00 34.29 3.62
2474 2632 3.182976 GTCTCCTCCTTTCCCTTAGGTT 58.817 50.000 0.00 0.00 34.29 3.50
2475 2633 2.835389 GTCTCCTCCTTTCCCTTAGGT 58.165 52.381 0.00 0.00 34.29 3.08
2476 2634 1.757699 CGTCTCCTCCTTTCCCTTAGG 59.242 57.143 0.00 0.00 0.00 2.69
2477 2635 2.691011 CTCGTCTCCTCCTTTCCCTTAG 59.309 54.545 0.00 0.00 0.00 2.18
2478 2636 2.736347 CTCGTCTCCTCCTTTCCCTTA 58.264 52.381 0.00 0.00 0.00 2.69
2479 2637 1.562783 CTCGTCTCCTCCTTTCCCTT 58.437 55.000 0.00 0.00 0.00 3.95
2480 2638 0.973496 GCTCGTCTCCTCCTTTCCCT 60.973 60.000 0.00 0.00 0.00 4.20
2481 2639 0.973496 AGCTCGTCTCCTCCTTTCCC 60.973 60.000 0.00 0.00 0.00 3.97
2482 2640 0.458260 GAGCTCGTCTCCTCCTTTCC 59.542 60.000 0.00 0.00 35.77 3.13
2483 2641 1.134175 CTGAGCTCGTCTCCTCCTTTC 59.866 57.143 9.64 0.00 41.18 2.62
2484 2642 1.181786 CTGAGCTCGTCTCCTCCTTT 58.818 55.000 9.64 0.00 41.18 3.11
2485 2643 0.329931 TCTGAGCTCGTCTCCTCCTT 59.670 55.000 9.64 0.00 41.18 3.36
2486 2644 0.550914 ATCTGAGCTCGTCTCCTCCT 59.449 55.000 9.64 0.00 41.18 3.69
2487 2645 0.667993 CATCTGAGCTCGTCTCCTCC 59.332 60.000 9.64 0.00 41.18 4.30
2488 2646 1.674359 TCATCTGAGCTCGTCTCCTC 58.326 55.000 9.64 0.00 41.18 3.71
2489 2647 2.023673 CTTCATCTGAGCTCGTCTCCT 58.976 52.381 9.64 0.00 41.18 3.69
2490 2648 2.020720 TCTTCATCTGAGCTCGTCTCC 58.979 52.381 9.64 0.00 41.18 3.71
2491 2649 3.314913 TCATCTTCATCTGAGCTCGTCTC 59.685 47.826 9.64 1.45 42.23 3.36
2492 2650 3.286353 TCATCTTCATCTGAGCTCGTCT 58.714 45.455 9.64 0.00 0.00 4.18
2493 2651 3.706802 TCATCTTCATCTGAGCTCGTC 57.293 47.619 9.64 0.00 0.00 4.20
2494 2652 4.462508 TTTCATCTTCATCTGAGCTCGT 57.537 40.909 9.64 0.00 0.00 4.18
2495 2653 4.448395 GGATTTCATCTTCATCTGAGCTCG 59.552 45.833 9.64 4.19 0.00 5.03
2496 2654 4.756135 GGGATTTCATCTTCATCTGAGCTC 59.244 45.833 6.82 6.82 0.00 4.09
2497 2655 4.165565 TGGGATTTCATCTTCATCTGAGCT 59.834 41.667 0.00 0.00 0.00 4.09
2498 2656 4.458397 TGGGATTTCATCTTCATCTGAGC 58.542 43.478 0.00 0.00 0.00 4.26
2499 2657 7.174599 GGTAATGGGATTTCATCTTCATCTGAG 59.825 40.741 0.00 0.00 0.00 3.35
2500 2658 7.000472 GGTAATGGGATTTCATCTTCATCTGA 59.000 38.462 0.00 0.00 0.00 3.27
2501 2659 7.002879 AGGTAATGGGATTTCATCTTCATCTG 58.997 38.462 0.00 0.00 0.00 2.90
2502 2660 7.147248 TGAGGTAATGGGATTTCATCTTCATCT 60.147 37.037 0.00 0.00 0.00 2.90
2503 2661 7.000472 TGAGGTAATGGGATTTCATCTTCATC 59.000 38.462 0.00 0.00 0.00 2.92
2504 2662 6.914665 TGAGGTAATGGGATTTCATCTTCAT 58.085 36.000 0.00 0.00 0.00 2.57
2505 2663 6.325993 TGAGGTAATGGGATTTCATCTTCA 57.674 37.500 0.00 0.00 0.00 3.02
2506 2664 6.039829 GGTTGAGGTAATGGGATTTCATCTTC 59.960 42.308 0.00 0.00 0.00 2.87
2507 2665 5.893824 GGTTGAGGTAATGGGATTTCATCTT 59.106 40.000 0.00 0.00 0.00 2.40
2508 2666 5.194537 AGGTTGAGGTAATGGGATTTCATCT 59.805 40.000 0.00 0.00 0.00 2.90
2509 2667 5.449553 AGGTTGAGGTAATGGGATTTCATC 58.550 41.667 0.00 0.00 0.00 2.92
2510 2668 5.472301 AGGTTGAGGTAATGGGATTTCAT 57.528 39.130 0.00 0.00 0.00 2.57
2511 2669 4.946160 AGGTTGAGGTAATGGGATTTCA 57.054 40.909 0.00 0.00 0.00 2.69
2512 2670 5.770162 CCATAGGTTGAGGTAATGGGATTTC 59.230 44.000 0.00 0.00 34.66 2.17
2513 2671 5.435041 TCCATAGGTTGAGGTAATGGGATTT 59.565 40.000 0.00 0.00 38.11 2.17
2514 2672 4.981647 TCCATAGGTTGAGGTAATGGGATT 59.018 41.667 0.00 0.00 38.11 3.01
2515 2673 4.577096 TCCATAGGTTGAGGTAATGGGAT 58.423 43.478 0.00 0.00 38.11 3.85
2516 2674 4.015617 TCCATAGGTTGAGGTAATGGGA 57.984 45.455 0.00 0.00 38.11 4.37
2517 2675 6.418101 CATATCCATAGGTTGAGGTAATGGG 58.582 44.000 0.00 0.00 38.11 4.00
2518 2676 5.882557 GCATATCCATAGGTTGAGGTAATGG 59.117 44.000 0.00 0.00 38.76 3.16
2519 2677 6.475504 TGCATATCCATAGGTTGAGGTAATG 58.524 40.000 0.00 0.00 0.00 1.90
2520 2678 6.702449 TGCATATCCATAGGTTGAGGTAAT 57.298 37.500 0.00 0.00 0.00 1.89
2521 2679 6.044287 ACATGCATATCCATAGGTTGAGGTAA 59.956 38.462 0.00 0.00 0.00 2.85
2522 2680 5.547666 ACATGCATATCCATAGGTTGAGGTA 59.452 40.000 0.00 0.00 0.00 3.08
2523 2681 4.352001 ACATGCATATCCATAGGTTGAGGT 59.648 41.667 0.00 0.00 0.00 3.85
2524 2682 4.698780 CACATGCATATCCATAGGTTGAGG 59.301 45.833 0.00 0.00 0.00 3.86
2525 2683 4.698780 CCACATGCATATCCATAGGTTGAG 59.301 45.833 0.00 0.00 0.00 3.02
2526 2684 4.350520 TCCACATGCATATCCATAGGTTGA 59.649 41.667 0.00 0.00 0.00 3.18
2527 2685 4.654915 TCCACATGCATATCCATAGGTTG 58.345 43.478 0.00 0.00 0.00 3.77
2528 2686 4.352001 ACTCCACATGCATATCCATAGGTT 59.648 41.667 0.00 0.00 0.00 3.50
2529 2687 3.912528 ACTCCACATGCATATCCATAGGT 59.087 43.478 0.00 0.00 0.00 3.08
2530 2688 4.564782 ACTCCACATGCATATCCATAGG 57.435 45.455 0.00 0.00 0.00 2.57
2531 2689 5.554070 TGAACTCCACATGCATATCCATAG 58.446 41.667 0.00 0.00 0.00 2.23
2532 2690 5.565455 TGAACTCCACATGCATATCCATA 57.435 39.130 0.00 0.00 0.00 2.74
2533 2691 4.442401 TGAACTCCACATGCATATCCAT 57.558 40.909 0.00 0.00 0.00 3.41
2534 2692 3.929955 TGAACTCCACATGCATATCCA 57.070 42.857 0.00 0.00 0.00 3.41
2535 2693 5.581126 TTTTGAACTCCACATGCATATCC 57.419 39.130 0.00 0.00 0.00 2.59
2536 2694 6.624423 ACTTTTTGAACTCCACATGCATATC 58.376 36.000 0.00 0.00 0.00 1.63
2537 2695 6.209192 TGACTTTTTGAACTCCACATGCATAT 59.791 34.615 0.00 0.00 0.00 1.78
2538 2696 5.534278 TGACTTTTTGAACTCCACATGCATA 59.466 36.000 0.00 0.00 0.00 3.14
2539 2697 4.341806 TGACTTTTTGAACTCCACATGCAT 59.658 37.500 0.00 0.00 0.00 3.96
2540 2698 3.698539 TGACTTTTTGAACTCCACATGCA 59.301 39.130 0.00 0.00 0.00 3.96
2541 2699 4.305989 TGACTTTTTGAACTCCACATGC 57.694 40.909 0.00 0.00 0.00 4.06
2542 2700 4.741676 GCTTGACTTTTTGAACTCCACATG 59.258 41.667 0.00 0.00 0.00 3.21
2543 2701 4.202151 GGCTTGACTTTTTGAACTCCACAT 60.202 41.667 0.00 0.00 0.00 3.21
2544 2702 3.130340 GGCTTGACTTTTTGAACTCCACA 59.870 43.478 0.00 0.00 0.00 4.17
2545 2703 3.381590 AGGCTTGACTTTTTGAACTCCAC 59.618 43.478 0.00 0.00 0.00 4.02
2546 2704 3.631250 AGGCTTGACTTTTTGAACTCCA 58.369 40.909 0.00 0.00 0.00 3.86
2547 2705 3.004839 GGAGGCTTGACTTTTTGAACTCC 59.995 47.826 0.00 0.00 35.70 3.85
2548 2706 3.004839 GGGAGGCTTGACTTTTTGAACTC 59.995 47.826 0.00 0.00 0.00 3.01
2549 2707 2.959030 GGGAGGCTTGACTTTTTGAACT 59.041 45.455 0.00 0.00 0.00 3.01
2550 2708 2.959030 AGGGAGGCTTGACTTTTTGAAC 59.041 45.455 0.00 0.00 0.00 3.18
2551 2709 2.958355 CAGGGAGGCTTGACTTTTTGAA 59.042 45.455 0.00 0.00 0.00 2.69
2552 2710 2.174639 TCAGGGAGGCTTGACTTTTTGA 59.825 45.455 0.00 0.00 0.00 2.69
2553 2711 2.586425 TCAGGGAGGCTTGACTTTTTG 58.414 47.619 0.00 0.00 0.00 2.44
2554 2712 3.532641 ATCAGGGAGGCTTGACTTTTT 57.467 42.857 0.00 0.00 0.00 1.94
2555 2713 3.846588 TCTATCAGGGAGGCTTGACTTTT 59.153 43.478 0.00 0.00 0.00 2.27
2556 2714 3.454082 CTCTATCAGGGAGGCTTGACTTT 59.546 47.826 0.00 0.00 0.00 2.66
2557 2715 3.037549 CTCTATCAGGGAGGCTTGACTT 58.962 50.000 0.00 0.00 0.00 3.01
2558 2716 2.676748 CTCTATCAGGGAGGCTTGACT 58.323 52.381 0.00 0.00 0.00 3.41
2559 2717 1.069978 GCTCTATCAGGGAGGCTTGAC 59.930 57.143 0.00 0.00 0.00 3.18
2560 2718 1.343377 TGCTCTATCAGGGAGGCTTGA 60.343 52.381 0.00 0.00 0.00 3.02
2561 2719 1.126488 TGCTCTATCAGGGAGGCTTG 58.874 55.000 0.00 0.00 0.00 4.01
2562 2720 1.885049 TTGCTCTATCAGGGAGGCTT 58.115 50.000 0.00 0.00 0.00 4.35
2563 2721 1.767681 CTTTGCTCTATCAGGGAGGCT 59.232 52.381 0.00 0.00 0.00 4.58
2564 2722 1.765314 TCTTTGCTCTATCAGGGAGGC 59.235 52.381 0.00 0.00 0.00 4.70
2565 2723 4.195416 GTTTCTTTGCTCTATCAGGGAGG 58.805 47.826 0.00 0.00 0.00 4.30
2566 2724 4.080638 AGGTTTCTTTGCTCTATCAGGGAG 60.081 45.833 0.00 0.00 0.00 4.30
2567 2725 3.846588 AGGTTTCTTTGCTCTATCAGGGA 59.153 43.478 0.00 0.00 0.00 4.20
2568 2726 4.227864 AGGTTTCTTTGCTCTATCAGGG 57.772 45.455 0.00 0.00 0.00 4.45
2569 2727 6.644347 TCTTAGGTTTCTTTGCTCTATCAGG 58.356 40.000 0.00 0.00 0.00 3.86
2570 2728 7.168972 CGATCTTAGGTTTCTTTGCTCTATCAG 59.831 40.741 0.00 0.00 0.00 2.90
2571 2729 6.980978 CGATCTTAGGTTTCTTTGCTCTATCA 59.019 38.462 0.00 0.00 0.00 2.15
2572 2730 7.203910 TCGATCTTAGGTTTCTTTGCTCTATC 58.796 38.462 0.00 0.00 0.00 2.08
2573 2731 7.113658 TCGATCTTAGGTTTCTTTGCTCTAT 57.886 36.000 0.00 0.00 0.00 1.98
2574 2732 6.153000 ACTCGATCTTAGGTTTCTTTGCTCTA 59.847 38.462 0.00 0.00 0.00 2.43
2575 2733 5.046950 ACTCGATCTTAGGTTTCTTTGCTCT 60.047 40.000 0.00 0.00 0.00 4.09
2576 2734 5.172205 ACTCGATCTTAGGTTTCTTTGCTC 58.828 41.667 0.00 0.00 0.00 4.26
2577 2735 5.153950 ACTCGATCTTAGGTTTCTTTGCT 57.846 39.130 0.00 0.00 0.00 3.91
2578 2736 5.864628 AACTCGATCTTAGGTTTCTTTGC 57.135 39.130 0.00 0.00 0.00 3.68
2579 2737 8.604890 GGATAAACTCGATCTTAGGTTTCTTTG 58.395 37.037 1.95 0.00 34.40 2.77
2580 2738 7.769507 GGGATAAACTCGATCTTAGGTTTCTTT 59.230 37.037 1.95 0.00 34.40 2.52
2581 2739 7.125963 AGGGATAAACTCGATCTTAGGTTTCTT 59.874 37.037 1.95 0.00 34.40 2.52
2582 2740 6.612049 AGGGATAAACTCGATCTTAGGTTTCT 59.388 38.462 1.95 0.00 34.40 2.52
2583 2741 6.818233 AGGGATAAACTCGATCTTAGGTTTC 58.182 40.000 1.95 0.72 34.40 2.78
2584 2742 6.809976 AGGGATAAACTCGATCTTAGGTTT 57.190 37.500 1.11 4.03 36.19 3.27
2585 2743 6.809976 AAGGGATAAACTCGATCTTAGGTT 57.190 37.500 1.45 1.45 0.00 3.50
2586 2744 6.809976 AAAGGGATAAACTCGATCTTAGGT 57.190 37.500 0.00 0.00 0.00 3.08
2587 2745 6.421202 CGAAAAGGGATAAACTCGATCTTAGG 59.579 42.308 0.00 0.00 0.00 2.69
2588 2746 6.074249 GCGAAAAGGGATAAACTCGATCTTAG 60.074 42.308 0.00 0.00 0.00 2.18
2589 2747 5.751990 GCGAAAAGGGATAAACTCGATCTTA 59.248 40.000 0.00 0.00 0.00 2.10
2590 2748 4.571176 GCGAAAAGGGATAAACTCGATCTT 59.429 41.667 0.00 0.00 0.00 2.40
2591 2749 4.120589 GCGAAAAGGGATAAACTCGATCT 58.879 43.478 0.00 0.00 0.00 2.75
2592 2750 4.454403 GCGAAAAGGGATAAACTCGATC 57.546 45.455 0.00 0.00 0.00 3.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.