Multiple sequence alignment - TraesCS7A01G542900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G542900 chr7A 100.000 5105 0 0 1 5105 719571236 719566132 0.000000e+00 9428.0
1 TraesCS7A01G542900 chr7B 90.494 3503 252 47 1659 5104 721202585 721199107 0.000000e+00 4549.0
2 TraesCS7A01G542900 chr7B 87.869 305 17 13 918 1204 721203424 721203122 1.760000e-89 340.0
3 TraesCS7A01G542900 chr7B 93.701 127 8 0 740 866 109935619 109935745 1.880000e-44 191.0
4 TraesCS7A01G542900 chr7D 91.968 2465 150 31 2662 5104 623536384 623533946 0.000000e+00 3411.0
5 TraesCS7A01G542900 chr7D 83.400 1253 120 41 1480 2693 623537600 623536397 0.000000e+00 1081.0
6 TraesCS7A01G542900 chr7D 90.616 341 15 8 877 1203 623538167 623537830 2.180000e-118 436.0
7 TraesCS7A01G542900 chr7D 88.564 376 18 11 1 358 623539020 623538652 2.820000e-117 433.0
8 TraesCS7A01G542900 chr7D 83.508 382 46 13 1813 2184 495141261 495141635 1.760000e-89 340.0
9 TraesCS7A01G542900 chrUn 84.218 678 70 23 1515 2184 358530257 358530905 4.340000e-175 625.0
10 TraesCS7A01G542900 chrUn 84.218 678 70 23 1515 2184 442830207 442829559 4.340000e-175 625.0
11 TraesCS7A01G542900 chrUn 79.592 98 13 4 929 1026 23544339 23544429 4.270000e-06 63.9
12 TraesCS7A01G542900 chr6B 84.218 678 70 23 1515 2184 72318067 72317419 4.340000e-175 625.0
13 TraesCS7A01G542900 chr6B 84.218 678 70 23 1515 2184 72323660 72323012 4.340000e-175 625.0
14 TraesCS7A01G542900 chr6B 84.071 678 71 23 1515 2184 72315273 72314625 2.020000e-173 619.0
15 TraesCS7A01G542900 chr6B 84.071 678 71 23 1515 2184 72326456 72325808 2.020000e-173 619.0
16 TraesCS7A01G542900 chr6B 83.923 678 72 23 1515 2184 72320860 72320212 9.390000e-172 614.0
17 TraesCS7A01G542900 chr6B 95.868 121 5 0 739 859 267021893 267021773 4.030000e-46 196.0
18 TraesCS7A01G542900 chr6B 93.182 132 5 4 727 857 500240545 500240673 1.880000e-44 191.0
19 TraesCS7A01G542900 chr5B 85.209 311 37 6 1912 2217 5426568 5426262 1.380000e-80 311.0
20 TraesCS7A01G542900 chr5B 95.833 120 5 0 739 858 79817995 79817876 1.450000e-45 195.0
21 TraesCS7A01G542900 chr4A 90.129 233 18 4 1517 1744 500542 500310 1.070000e-76 298.0
22 TraesCS7A01G542900 chr4A 77.320 388 36 33 979 1340 551495015 551494654 1.130000e-41 182.0
23 TraesCS7A01G542900 chr2A 89.700 233 19 3 1517 1744 5147450 5147682 5.000000e-75 292.0
24 TraesCS7A01G542900 chr4B 81.402 328 40 9 1398 1718 635655844 635656157 1.100000e-61 248.0
25 TraesCS7A01G542900 chr4B 81.481 216 26 9 929 1139 495360140 495360346 1.140000e-36 165.0
26 TraesCS7A01G542900 chr4B 83.810 105 6 9 929 1028 626634519 626634421 7.040000e-14 89.8
27 TraesCS7A01G542900 chr2B 97.436 117 3 0 742 858 767419772 767419888 3.120000e-47 200.0
28 TraesCS7A01G542900 chr2B 94.400 125 6 1 735 859 588950205 588950082 1.880000e-44 191.0
29 TraesCS7A01G542900 chr2B 90.714 140 9 3 738 875 799132955 799132818 3.140000e-42 183.0
30 TraesCS7A01G542900 chr2B 80.769 104 9 5 929 1027 727673888 727673791 2.550000e-08 71.3
31 TraesCS7A01G542900 chr1D 94.444 126 7 0 733 858 34937099 34937224 1.450000e-45 195.0
32 TraesCS7A01G542900 chr1D 85.714 105 4 4 929 1028 250203936 250203838 3.250000e-17 100.0
33 TraesCS7A01G542900 chr5D 95.122 123 5 1 740 862 464292747 464292868 5.220000e-45 193.0
34 TraesCS7A01G542900 chr2D 86.667 105 3 4 929 1028 620497016 620496918 6.990000e-19 106.0
35 TraesCS7A01G542900 chr5A 83.810 105 6 4 929 1028 670565111 670565013 7.040000e-14 89.8
36 TraesCS7A01G542900 chr4D 83.810 105 6 5 929 1028 221306102 221306200 7.040000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G542900 chr7A 719566132 719571236 5104 True 9428.00 9428 100.0000 1 5105 1 chr7A.!!$R1 5104
1 TraesCS7A01G542900 chr7B 721199107 721203424 4317 True 2444.50 4549 89.1815 918 5104 2 chr7B.!!$R1 4186
2 TraesCS7A01G542900 chr7D 623533946 623539020 5074 True 1340.25 3411 88.6370 1 5104 4 chr7D.!!$R1 5103
3 TraesCS7A01G542900 chrUn 358530257 358530905 648 False 625.00 625 84.2180 1515 2184 1 chrUn.!!$F2 669
4 TraesCS7A01G542900 chrUn 442829559 442830207 648 True 625.00 625 84.2180 1515 2184 1 chrUn.!!$R1 669
5 TraesCS7A01G542900 chr6B 72314625 72326456 11831 True 620.40 625 84.1002 1515 2184 5 chr6B.!!$R2 669

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
845 944 0.030369 CCTCCGACGAGTATTTCCGG 59.970 60.0 0.00 0.00 41.36 5.14 F
854 953 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.0 13.64 4.95 46.06 4.20 F
1731 4759 0.032130 GGACTGCTCGTGACTTGACA 59.968 55.0 0.00 0.00 0.00 3.58 F
1975 10614 0.179215 CGCTGTCGTCATTCCAAAGC 60.179 55.0 0.00 0.00 0.00 3.51 F
2374 13825 0.605319 GTTGTTCTCCATCCGTGGCA 60.605 55.0 0.00 0.00 45.63 4.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1708 4733 0.687354 AAGTCACGAGCAGTCCCAAT 59.313 50.000 0.00 0.00 0.00 3.16 R
1975 10614 0.806102 ACGATCGCATTGGGAGTTCG 60.806 55.000 16.60 19.20 42.07 3.95 R
3513 15017 0.035439 TTTCGTCCCAAGGCTCCATC 60.035 55.000 0.00 0.00 0.00 3.51 R
3716 15225 2.498892 GCAAGTCGCAGCTTGTTTG 58.501 52.632 15.68 0.00 45.47 2.93 R
4330 15846 0.998928 ATGGTGATGGGTTAGCCACA 59.001 50.000 4.87 3.44 36.17 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 0.606401 AATGTGGAAGGTCGCCAGTG 60.606 55.000 0.00 0.00 35.77 3.66
43 44 1.202533 AGGTCGCCAGTGTATATGTGC 60.203 52.381 0.00 0.00 0.00 4.57
70 71 8.032952 TGCAGATGTATGTAAATAGCATAAGC 57.967 34.615 0.00 0.00 42.56 3.09
79 80 4.459852 AAATAGCATAAGCCCAGTGGAT 57.540 40.909 11.95 0.00 43.56 3.41
150 151 2.739609 GCTTCCTTATGCCAAATGGTGC 60.740 50.000 0.71 0.00 37.57 5.01
153 154 0.817013 CTTATGCCAAATGGTGCGGT 59.183 50.000 0.71 0.00 37.57 5.68
203 204 3.503748 GGTCTCTTCTTGTGTGGAATTGG 59.496 47.826 0.00 0.00 0.00 3.16
204 205 4.137543 GTCTCTTCTTGTGTGGAATTGGT 58.862 43.478 0.00 0.00 0.00 3.67
205 206 4.023707 GTCTCTTCTTGTGTGGAATTGGTG 60.024 45.833 0.00 0.00 0.00 4.17
229 230 0.461870 TGTGTGTGTGTGGTCTCTGC 60.462 55.000 0.00 0.00 0.00 4.26
230 231 1.146041 TGTGTGTGTGGTCTCTGCC 59.854 57.895 0.00 0.00 0.00 4.85
256 275 3.010808 TGTTACATTACCCCTGGGAAAGG 59.989 47.826 16.20 12.26 46.94 3.11
263 282 4.442038 CCTGGGAAAGGGGAAAGC 57.558 61.111 0.00 0.00 43.15 3.51
264 283 1.305297 CCTGGGAAAGGGGAAAGCC 60.305 63.158 0.00 0.00 43.15 4.35
265 284 1.464722 CTGGGAAAGGGGAAAGCCA 59.535 57.895 0.00 0.00 35.15 4.75
266 285 0.613012 CTGGGAAAGGGGAAAGCCAG 60.613 60.000 0.00 0.00 35.15 4.85
267 286 1.305297 GGGAAAGGGGAAAGCCAGG 60.305 63.158 0.00 0.00 35.15 4.45
268 287 1.305297 GGAAAGGGGAAAGCCAGGG 60.305 63.158 0.00 0.00 35.15 4.45
269 288 1.984570 GAAAGGGGAAAGCCAGGGC 60.985 63.158 0.97 0.97 42.33 5.19
331 352 1.486145 GGTCTCCGGTTTCAAGGGGA 61.486 60.000 0.00 0.00 33.98 4.81
345 366 0.251787 AGGGGACTTTGAACATGCCC 60.252 55.000 0.00 0.00 44.13 5.36
350 371 2.614481 GGACTTTGAACATGCCCGTCTA 60.614 50.000 0.00 0.00 0.00 2.59
358 379 1.153429 ATGCCCGTCTAGAAACCGC 60.153 57.895 0.00 0.00 0.00 5.68
360 381 2.570181 CCCGTCTAGAAACCGCGT 59.430 61.111 4.92 0.00 0.00 6.01
362 383 1.080974 CCGTCTAGAAACCGCGTGT 60.081 57.895 4.92 0.00 0.00 4.49
364 385 0.386352 CGTCTAGAAACCGCGTGTGA 60.386 55.000 4.92 0.00 0.00 3.58
367 388 0.038526 CTAGAAACCGCGTGTGACCT 60.039 55.000 4.92 4.09 0.00 3.85
369 390 0.038526 AGAAACCGCGTGTGACCTAG 60.039 55.000 4.92 0.00 0.00 3.02
371 392 2.372040 AAACCGCGTGTGACCTAGCA 62.372 55.000 4.92 0.00 0.00 3.49
372 393 2.507102 CCGCGTGTGACCTAGCAG 60.507 66.667 4.92 0.00 0.00 4.24
375 396 2.507102 CGTGTGACCTAGCAGCGG 60.507 66.667 0.00 0.00 0.00 5.52
376 397 2.815647 GTGTGACCTAGCAGCGGC 60.816 66.667 0.00 0.00 41.61 6.53
394 415 4.148825 GCGGCATCTGACCCGTCT 62.149 66.667 16.71 0.00 45.98 4.18
395 416 2.579201 CGGCATCTGACCCGTCTT 59.421 61.111 9.66 0.00 39.67 3.01
396 417 1.519455 CGGCATCTGACCCGTCTTC 60.519 63.158 9.66 0.00 39.67 2.87
397 418 1.901085 GGCATCTGACCCGTCTTCT 59.099 57.895 0.00 0.00 0.00 2.85
398 419 0.460987 GGCATCTGACCCGTCTTCTG 60.461 60.000 0.00 0.00 0.00 3.02
399 420 0.532573 GCATCTGACCCGTCTTCTGA 59.467 55.000 0.00 0.00 0.00 3.27
400 421 1.066858 GCATCTGACCCGTCTTCTGAA 60.067 52.381 0.00 0.00 0.00 3.02
401 422 2.886081 CATCTGACCCGTCTTCTGAAG 58.114 52.381 11.18 11.18 0.00 3.02
402 423 0.603569 TCTGACCCGTCTTCTGAAGC 59.396 55.000 12.54 7.08 0.00 3.86
404 425 0.318441 TGACCCGTCTTCTGAAGCTG 59.682 55.000 12.54 7.07 0.00 4.24
405 426 0.318762 GACCCGTCTTCTGAAGCTGT 59.681 55.000 12.54 6.60 0.00 4.40
406 427 0.034059 ACCCGTCTTCTGAAGCTGTG 59.966 55.000 12.54 4.31 0.00 3.66
407 428 0.034059 CCCGTCTTCTGAAGCTGTGT 59.966 55.000 12.54 0.00 0.00 3.72
408 429 1.143305 CCGTCTTCTGAAGCTGTGTG 58.857 55.000 12.54 0.00 0.00 3.82
409 430 0.510359 CGTCTTCTGAAGCTGTGTGC 59.490 55.000 12.54 0.00 43.29 4.57
421 442 2.089980 GCTGTGTGCTGGATTCAATCT 58.910 47.619 0.00 0.00 38.95 2.40
449 532 2.222976 CGCTGTGTGCTGAATTCATCTC 60.223 50.000 8.96 6.51 40.11 2.75
450 533 2.745821 GCTGTGTGCTGAATTCATCTCA 59.254 45.455 8.96 9.20 38.95 3.27
452 535 4.730903 GCTGTGTGCTGAATTCATCTCATG 60.731 45.833 14.89 12.28 38.95 3.07
466 551 4.940654 TCATCTCATGGTAAAATGTTGCGA 59.059 37.500 0.00 0.00 0.00 5.10
467 552 5.414144 TCATCTCATGGTAAAATGTTGCGAA 59.586 36.000 0.00 0.00 0.00 4.70
470 555 6.507900 TCTCATGGTAAAATGTTGCGAAAAA 58.492 32.000 0.00 0.00 0.00 1.94
495 580 2.189499 GCCGTGCTGAATCCATCCC 61.189 63.158 0.00 0.00 0.00 3.85
505 604 4.646492 GCTGAATCCATCCCTGTAAAATGT 59.354 41.667 0.00 0.00 0.00 2.71
508 607 6.015918 TGAATCCATCCCTGTAAAATGTTGT 58.984 36.000 0.00 0.00 0.00 3.32
512 611 5.835819 TCCATCCCTGTAAAATGTTGTGAAA 59.164 36.000 0.00 0.00 0.00 2.69
514 613 6.989169 CCATCCCTGTAAAATGTTGTGAAAAA 59.011 34.615 0.00 0.00 0.00 1.94
539 638 3.263941 CCTGCGGCAGGTTAACAC 58.736 61.111 35.42 0.00 45.82 3.32
540 639 1.599518 CCTGCGGCAGGTTAACACA 60.600 57.895 35.42 0.00 45.82 3.72
541 640 1.574428 CTGCGGCAGGTTAACACAC 59.426 57.895 22.11 0.00 0.00 3.82
545 644 0.306533 CGGCAGGTTAACACACACAC 59.693 55.000 8.10 0.00 0.00 3.82
549 648 2.477189 GCAGGTTAACACACACACACAC 60.477 50.000 8.10 0.00 0.00 3.82
550 649 2.744741 CAGGTTAACACACACACACACA 59.255 45.455 8.10 0.00 0.00 3.72
551 650 2.745281 AGGTTAACACACACACACACAC 59.255 45.455 8.10 0.00 0.00 3.82
555 654 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
556 655 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
557 656 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
561 660 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
597 696 4.307834 CGTAGACACGGTCTCAAAATTG 57.692 45.455 9.44 0.00 42.40 2.32
598 697 3.739300 CGTAGACACGGTCTCAAAATTGT 59.261 43.478 9.44 0.00 42.40 2.71
599 698 4.919168 CGTAGACACGGTCTCAAAATTGTA 59.081 41.667 9.44 0.00 42.40 2.41
601 700 6.748658 CGTAGACACGGTCTCAAAATTGTATA 59.251 38.462 9.44 0.00 42.40 1.47
602 701 6.963049 AGACACGGTCTCAAAATTGTATAC 57.037 37.500 0.00 0.00 38.71 1.47
603 702 6.698380 AGACACGGTCTCAAAATTGTATACT 58.302 36.000 4.17 0.00 38.71 2.12
604 703 7.833786 AGACACGGTCTCAAAATTGTATACTA 58.166 34.615 4.17 0.00 38.71 1.82
605 704 7.974501 AGACACGGTCTCAAAATTGTATACTAG 59.025 37.037 4.17 0.00 38.71 2.57
606 705 7.039882 ACACGGTCTCAAAATTGTATACTAGG 58.960 38.462 4.17 0.00 0.00 3.02
607 706 7.093640 ACACGGTCTCAAAATTGTATACTAGGA 60.094 37.037 4.17 0.00 0.00 2.94
608 707 7.926555 CACGGTCTCAAAATTGTATACTAGGAT 59.073 37.037 4.17 0.00 0.00 3.24
609 708 8.142551 ACGGTCTCAAAATTGTATACTAGGATC 58.857 37.037 4.17 0.00 0.00 3.36
610 709 8.141909 CGGTCTCAAAATTGTATACTAGGATCA 58.858 37.037 4.17 0.00 0.00 2.92
611 710 9.262358 GGTCTCAAAATTGTATACTAGGATCAC 57.738 37.037 4.17 0.00 0.00 3.06
612 711 9.262358 GTCTCAAAATTGTATACTAGGATCACC 57.738 37.037 4.17 0.00 0.00 4.02
613 712 8.429641 TCTCAAAATTGTATACTAGGATCACCC 58.570 37.037 4.17 0.00 36.73 4.61
614 713 7.214381 TCAAAATTGTATACTAGGATCACCCG 58.786 38.462 4.17 0.00 40.87 5.28
615 714 4.803098 ATTGTATACTAGGATCACCCGC 57.197 45.455 4.17 0.00 40.87 6.13
616 715 3.232720 TGTATACTAGGATCACCCGCA 57.767 47.619 4.17 0.00 40.87 5.69
617 716 3.568443 TGTATACTAGGATCACCCGCAA 58.432 45.455 4.17 0.00 40.87 4.85
618 717 3.962063 TGTATACTAGGATCACCCGCAAA 59.038 43.478 4.17 0.00 40.87 3.68
619 718 4.406326 TGTATACTAGGATCACCCGCAAAA 59.594 41.667 4.17 0.00 40.87 2.44
620 719 2.871096 ACTAGGATCACCCGCAAAAA 57.129 45.000 0.00 0.00 40.87 1.94
685 784 4.783621 GCGGCCTGGAGCACATGA 62.784 66.667 0.00 0.00 46.50 3.07
686 785 2.046023 CGGCCTGGAGCACATGAA 60.046 61.111 0.00 0.00 46.50 2.57
687 786 1.452651 CGGCCTGGAGCACATGAAT 60.453 57.895 0.00 0.00 46.50 2.57
688 787 1.033746 CGGCCTGGAGCACATGAATT 61.034 55.000 0.00 0.00 46.50 2.17
690 789 1.135721 GGCCTGGAGCACATGAATTTC 59.864 52.381 0.00 0.00 46.50 2.17
691 790 1.820519 GCCTGGAGCACATGAATTTCA 59.179 47.619 0.00 0.75 42.97 2.69
693 792 3.490419 GCCTGGAGCACATGAATTTCATC 60.490 47.826 8.95 0.00 42.97 2.92
694 793 3.067742 CCTGGAGCACATGAATTTCATCC 59.932 47.826 8.95 8.66 34.28 3.51
696 795 2.945008 GGAGCACATGAATTTCATCCGA 59.055 45.455 8.95 0.00 34.28 4.55
699 798 5.450965 GGAGCACATGAATTTCATCCGAATT 60.451 40.000 8.95 0.00 34.28 2.17
701 800 6.400568 AGCACATGAATTTCATCCGAATTTT 58.599 32.000 8.95 0.00 34.28 1.82
702 801 6.532657 AGCACATGAATTTCATCCGAATTTTC 59.467 34.615 8.95 0.00 34.28 2.29
705 804 7.221452 CACATGAATTTCATCCGAATTTTCCTC 59.779 37.037 8.95 0.00 34.28 3.71
706 805 7.123247 ACATGAATTTCATCCGAATTTTCCTCT 59.877 33.333 8.95 0.00 34.28 3.69
707 806 6.855836 TGAATTTCATCCGAATTTTCCTCTG 58.144 36.000 0.00 0.00 0.00 3.35
709 808 3.634397 TCATCCGAATTTTCCTCTGCT 57.366 42.857 0.00 0.00 0.00 4.24
710 809 3.535561 TCATCCGAATTTTCCTCTGCTC 58.464 45.455 0.00 0.00 0.00 4.26
712 811 1.009829 CCGAATTTTCCTCTGCTCGG 58.990 55.000 0.00 0.00 39.79 4.63
714 813 2.555199 CGAATTTTCCTCTGCTCGGAT 58.445 47.619 0.00 0.00 0.00 4.18
715 814 2.286294 CGAATTTTCCTCTGCTCGGATG 59.714 50.000 0.00 0.00 0.00 3.51
716 815 1.673168 ATTTTCCTCTGCTCGGATGC 58.327 50.000 0.00 0.00 0.00 3.91
717 816 0.615331 TTTTCCTCTGCTCGGATGCT 59.385 50.000 0.00 0.00 0.00 3.79
718 817 0.176680 TTTCCTCTGCTCGGATGCTC 59.823 55.000 0.00 0.00 0.00 4.26
719 818 0.685785 TTCCTCTGCTCGGATGCTCT 60.686 55.000 0.00 0.00 0.00 4.09
720 819 0.685785 TCCTCTGCTCGGATGCTCTT 60.686 55.000 0.00 0.00 0.00 2.85
721 820 0.530211 CCTCTGCTCGGATGCTCTTG 60.530 60.000 0.00 0.00 0.00 3.02
722 821 0.459078 CTCTGCTCGGATGCTCTTGA 59.541 55.000 0.00 0.00 0.00 3.02
723 822 0.459078 TCTGCTCGGATGCTCTTGAG 59.541 55.000 0.00 0.00 0.00 3.02
724 823 3.716585 GCTCGGATGCTCTTGAGC 58.283 61.111 15.01 15.01 45.95 4.26
726 825 1.140589 CTCGGATGCTCTTGAGCGT 59.859 57.895 16.16 16.16 37.69 5.07
727 826 1.144565 CTCGGATGCTCTTGAGCGTG 61.145 60.000 20.38 8.58 37.69 5.34
728 827 1.446792 CGGATGCTCTTGAGCGTGT 60.447 57.895 20.38 8.14 37.69 4.49
729 828 1.016130 CGGATGCTCTTGAGCGTGTT 61.016 55.000 20.38 4.77 37.69 3.32
730 829 0.445436 GGATGCTCTTGAGCGTGTTG 59.555 55.000 20.38 0.00 37.69 3.33
731 830 1.151668 GATGCTCTTGAGCGTGTTGT 58.848 50.000 20.38 1.97 37.69 3.32
733 832 1.783284 TGCTCTTGAGCGTGTTGTAG 58.217 50.000 16.48 0.00 37.69 2.74
734 833 1.068588 TGCTCTTGAGCGTGTTGTAGT 59.931 47.619 16.48 0.00 37.69 2.73
737 836 3.121445 GCTCTTGAGCGTGTTGTAGTAAC 59.879 47.826 6.88 0.00 0.00 2.50
738 837 4.547532 CTCTTGAGCGTGTTGTAGTAACT 58.452 43.478 0.00 0.00 0.00 2.24
739 838 4.940463 TCTTGAGCGTGTTGTAGTAACTT 58.060 39.130 0.00 0.00 0.00 2.66
740 839 4.743151 TCTTGAGCGTGTTGTAGTAACTTG 59.257 41.667 0.00 0.00 0.00 3.16
741 840 4.049546 TGAGCGTGTTGTAGTAACTTGT 57.950 40.909 0.00 0.00 0.00 3.16
743 842 4.977963 TGAGCGTGTTGTAGTAACTTGTAC 59.022 41.667 0.00 0.00 0.00 2.90
746 845 4.383948 GCGTGTTGTAGTAACTTGTACTCC 59.616 45.833 0.00 0.00 0.00 3.85
747 846 4.919754 CGTGTTGTAGTAACTTGTACTCCC 59.080 45.833 0.00 0.00 0.00 4.30
748 847 5.278660 CGTGTTGTAGTAACTTGTACTCCCT 60.279 44.000 0.00 0.00 0.00 4.20
750 849 5.244626 TGTTGTAGTAACTTGTACTCCCTCC 59.755 44.000 0.00 0.00 0.00 4.30
753 852 3.087781 AGTAACTTGTACTCCCTCCGTC 58.912 50.000 0.00 0.00 0.00 4.79
754 853 1.264295 AACTTGTACTCCCTCCGTCC 58.736 55.000 0.00 0.00 0.00 4.79
755 854 0.113776 ACTTGTACTCCCTCCGTCCA 59.886 55.000 0.00 0.00 0.00 4.02
757 856 1.621814 CTTGTACTCCCTCCGTCCAAA 59.378 52.381 0.00 0.00 0.00 3.28
758 857 1.946984 TGTACTCCCTCCGTCCAAAT 58.053 50.000 0.00 0.00 0.00 2.32
759 858 3.104519 TGTACTCCCTCCGTCCAAATA 57.895 47.619 0.00 0.00 0.00 1.40
760 859 3.649843 TGTACTCCCTCCGTCCAAATAT 58.350 45.455 0.00 0.00 0.00 1.28
761 860 4.806892 TGTACTCCCTCCGTCCAAATATA 58.193 43.478 0.00 0.00 0.00 0.86
762 861 4.586001 TGTACTCCCTCCGTCCAAATATAC 59.414 45.833 0.00 0.00 0.00 1.47
764 863 4.296056 ACTCCCTCCGTCCAAATATACTT 58.704 43.478 0.00 0.00 0.00 2.24
765 864 4.101119 ACTCCCTCCGTCCAAATATACTTG 59.899 45.833 0.00 0.00 0.00 3.16
766 865 4.035112 TCCCTCCGTCCAAATATACTTGT 58.965 43.478 0.00 0.00 0.00 3.16
767 866 4.100498 TCCCTCCGTCCAAATATACTTGTC 59.900 45.833 0.00 0.00 0.00 3.18
769 868 4.202080 CCTCCGTCCAAATATACTTGTCGA 60.202 45.833 9.24 0.00 0.00 4.20
770 869 5.327616 TCCGTCCAAATATACTTGTCGAA 57.672 39.130 9.24 0.00 0.00 3.71
773 872 5.808540 CCGTCCAAATATACTTGTCGAAGAA 59.191 40.000 9.24 0.00 39.69 2.52
774 873 6.311935 CCGTCCAAATATACTTGTCGAAGAAA 59.688 38.462 9.24 0.00 39.69 2.52
776 875 7.846107 CGTCCAAATATACTTGTCGAAGAAATG 59.154 37.037 0.00 0.00 39.69 2.32
777 876 7.640240 GTCCAAATATACTTGTCGAAGAAATGC 59.360 37.037 0.00 0.00 39.69 3.56
786 885 8.231304 ACTTGTCGAAGAAATGCATAAAAATG 57.769 30.769 0.00 0.00 39.69 2.32
790 889 8.862074 TGTCGAAGAAATGCATAAAAATGAATG 58.138 29.630 0.00 0.00 39.69 2.67
791 890 8.863049 GTCGAAGAAATGCATAAAAATGAATGT 58.137 29.630 0.00 0.00 39.69 2.71
831 930 6.929625 ACATCTAGATACATTCATTCCTCCG 58.070 40.000 4.54 0.00 0.00 4.63
832 931 6.721668 ACATCTAGATACATTCATTCCTCCGA 59.278 38.462 4.54 0.00 0.00 4.55
833 932 6.576662 TCTAGATACATTCATTCCTCCGAC 57.423 41.667 0.00 0.00 0.00 4.79
834 933 4.244425 AGATACATTCATTCCTCCGACG 57.756 45.455 0.00 0.00 0.00 5.12
835 934 3.889538 AGATACATTCATTCCTCCGACGA 59.110 43.478 0.00 0.00 0.00 4.20
836 935 2.586258 ACATTCATTCCTCCGACGAG 57.414 50.000 0.00 0.00 35.72 4.18
837 936 1.825474 ACATTCATTCCTCCGACGAGT 59.175 47.619 0.00 0.00 33.93 4.18
838 937 3.021695 ACATTCATTCCTCCGACGAGTA 58.978 45.455 0.00 0.00 33.93 2.59
839 938 3.637229 ACATTCATTCCTCCGACGAGTAT 59.363 43.478 0.00 0.00 33.93 2.12
840 939 4.099573 ACATTCATTCCTCCGACGAGTATT 59.900 41.667 0.00 0.00 33.93 1.89
841 940 4.730949 TTCATTCCTCCGACGAGTATTT 57.269 40.909 0.00 0.00 33.93 1.40
842 941 4.303086 TCATTCCTCCGACGAGTATTTC 57.697 45.455 0.00 0.00 33.93 2.17
843 942 3.067742 TCATTCCTCCGACGAGTATTTCC 59.932 47.826 0.00 0.00 33.93 3.13
844 943 1.019673 TCCTCCGACGAGTATTTCCG 58.980 55.000 0.00 0.00 33.93 4.30
845 944 0.030369 CCTCCGACGAGTATTTCCGG 59.970 60.000 0.00 0.00 41.36 5.14
846 945 1.019673 CTCCGACGAGTATTTCCGGA 58.980 55.000 0.00 0.00 45.74 5.14
847 946 0.734889 TCCGACGAGTATTTCCGGAC 59.265 55.000 1.83 0.00 43.47 4.79
848 947 0.590732 CCGACGAGTATTTCCGGACG 60.591 60.000 1.83 5.89 42.49 4.79
849 948 0.590732 CGACGAGTATTTCCGGACGG 60.591 60.000 1.83 3.96 0.00 4.79
850 949 0.734889 GACGAGTATTTCCGGACGGA 59.265 55.000 1.83 9.76 43.52 4.69
851 950 0.737219 ACGAGTATTTCCGGACGGAG 59.263 55.000 13.64 3.15 46.06 4.63
852 951 0.030369 CGAGTATTTCCGGACGGAGG 59.970 60.000 13.64 0.00 46.06 4.30
853 952 0.388294 GAGTATTTCCGGACGGAGGG 59.612 60.000 13.64 0.00 46.06 4.30
854 953 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
855 954 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
856 955 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.00 46.06 3.85
857 956 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59
858 957 0.251742 TTTCCGGACGGAGGGAGTAA 60.252 55.000 13.64 1.47 46.06 2.24
859 958 0.682209 TTCCGGACGGAGGGAGTAAG 60.682 60.000 13.64 0.00 46.06 2.34
860 959 1.379576 CCGGACGGAGGGAGTAAGT 60.380 63.158 4.40 0.00 37.50 2.24
861 960 0.969409 CCGGACGGAGGGAGTAAGTT 60.969 60.000 4.40 0.00 37.50 2.66
862 961 0.172803 CGGACGGAGGGAGTAAGTTG 59.827 60.000 0.00 0.00 0.00 3.16
863 962 1.264295 GGACGGAGGGAGTAAGTTGT 58.736 55.000 0.00 0.00 0.00 3.32
864 963 2.450476 GGACGGAGGGAGTAAGTTGTA 58.550 52.381 0.00 0.00 0.00 2.41
865 964 2.827921 GGACGGAGGGAGTAAGTTGTAA 59.172 50.000 0.00 0.00 0.00 2.41
866 965 3.119209 GGACGGAGGGAGTAAGTTGTAAG 60.119 52.174 0.00 0.00 0.00 2.34
867 966 2.233186 ACGGAGGGAGTAAGTTGTAAGC 59.767 50.000 0.00 0.00 0.00 3.09
868 967 2.734492 CGGAGGGAGTAAGTTGTAAGCG 60.734 54.545 0.00 0.00 0.00 4.68
869 968 2.494870 GGAGGGAGTAAGTTGTAAGCGA 59.505 50.000 0.00 0.00 0.00 4.93
870 969 3.429135 GGAGGGAGTAAGTTGTAAGCGAG 60.429 52.174 0.00 0.00 0.00 5.03
871 970 2.496470 AGGGAGTAAGTTGTAAGCGAGG 59.504 50.000 0.00 0.00 0.00 4.63
872 971 2.418334 GGGAGTAAGTTGTAAGCGAGGG 60.418 54.545 0.00 0.00 0.00 4.30
873 972 2.494870 GGAGTAAGTTGTAAGCGAGGGA 59.505 50.000 0.00 0.00 0.00 4.20
874 973 3.429135 GGAGTAAGTTGTAAGCGAGGGAG 60.429 52.174 0.00 0.00 0.00 4.30
875 974 2.496470 AGTAAGTTGTAAGCGAGGGAGG 59.504 50.000 0.00 0.00 0.00 4.30
907 1006 1.004161 AGAGAAGAAAAGCAGCCTCCC 59.996 52.381 0.00 0.00 0.00 4.30
923 1027 2.125753 CCTCGCTCACTCCAGTGC 60.126 66.667 1.49 0.00 45.25 4.40
998 1111 1.764454 GGAGGGAAGGAGGAGGAGC 60.764 68.421 0.00 0.00 0.00 4.70
1189 1331 2.781406 GTCACCCCCTCCTCTCCT 59.219 66.667 0.00 0.00 0.00 3.69
1190 1332 1.382009 GTCACCCCCTCCTCTCCTC 60.382 68.421 0.00 0.00 0.00 3.71
1191 1333 1.547755 TCACCCCCTCCTCTCCTCT 60.548 63.158 0.00 0.00 0.00 3.69
1196 1338 0.998945 CCCCTCCTCTCCTCTCCTCT 60.999 65.000 0.00 0.00 0.00 3.69
1198 1340 0.478507 CCTCCTCTCCTCTCCTCTCC 59.521 65.000 0.00 0.00 0.00 3.71
1199 1341 1.522900 CTCCTCTCCTCTCCTCTCCT 58.477 60.000 0.00 0.00 0.00 3.69
1200 1342 1.421646 CTCCTCTCCTCTCCTCTCCTC 59.578 61.905 0.00 0.00 0.00 3.71
1201 1343 1.010793 TCCTCTCCTCTCCTCTCCTCT 59.989 57.143 0.00 0.00 0.00 3.69
1202 1344 1.421646 CCTCTCCTCTCCTCTCCTCTC 59.578 61.905 0.00 0.00 0.00 3.20
1203 1345 1.421646 CTCTCCTCTCCTCTCCTCTCC 59.578 61.905 0.00 0.00 0.00 3.71
1204 1346 1.010793 TCTCCTCTCCTCTCCTCTCCT 59.989 57.143 0.00 0.00 0.00 3.69
1205 1347 1.143684 CTCCTCTCCTCTCCTCTCCTG 59.856 61.905 0.00 0.00 0.00 3.86
1206 1348 0.185901 CCTCTCCTCTCCTCTCCTGG 59.814 65.000 0.00 0.00 0.00 4.45
1208 1350 1.457455 CTCCTCTCCTCTCCTGGCC 60.457 68.421 0.00 0.00 0.00 5.36
1237 1384 2.671177 CCGTGCTTCGTGCTTCCAG 61.671 63.158 5.00 0.00 43.37 3.86
1239 1386 1.498865 CGTGCTTCGTGCTTCCAGTT 61.499 55.000 5.00 0.00 43.37 3.16
1240 1387 0.663153 GTGCTTCGTGCTTCCAGTTT 59.337 50.000 5.00 0.00 43.37 2.66
1247 1394 1.601903 CGTGCTTCCAGTTTGCTGTTA 59.398 47.619 0.00 0.00 41.02 2.41
1248 1395 2.602217 CGTGCTTCCAGTTTGCTGTTAC 60.602 50.000 0.00 0.00 41.02 2.50
1284 1431 0.752658 TCGGTCGATCCATGATGCTT 59.247 50.000 0.00 0.00 35.57 3.91
1345 1492 2.361189 TCCAGTGCGGATTGACTGA 58.639 52.632 0.00 0.00 41.90 3.41
1357 1511 3.637273 GACTGACGGGGTTGCCCT 61.637 66.667 4.02 0.00 44.66 5.19
1360 1514 1.971695 CTGACGGGGTTGCCCTTTC 60.972 63.158 4.02 2.00 44.66 2.62
1363 1517 2.045340 CGGGGTTGCCCTTTCGAT 60.045 61.111 4.02 0.00 44.66 3.59
1369 1523 3.020984 GGGTTGCCCTTTCGATTAATCA 58.979 45.455 15.57 0.39 41.34 2.57
1370 1524 3.636764 GGGTTGCCCTTTCGATTAATCAT 59.363 43.478 15.57 0.00 41.34 2.45
1372 1526 5.278315 GGGTTGCCCTTTCGATTAATCATAC 60.278 44.000 15.57 0.00 41.34 2.39
1373 1527 5.531287 GGTTGCCCTTTCGATTAATCATACT 59.469 40.000 15.57 0.00 0.00 2.12
1379 1541 6.401474 CCCTTTCGATTAATCATACTGCATCG 60.401 42.308 15.57 0.00 35.85 3.84
1394 1556 1.863267 CATCGACTTCTGCATCTCCC 58.137 55.000 0.00 0.00 0.00 4.30
1395 1557 1.137675 CATCGACTTCTGCATCTCCCA 59.862 52.381 0.00 0.00 0.00 4.37
1403 1565 2.045926 GCATCTCCCACCTTGCGT 60.046 61.111 0.00 0.00 0.00 5.24
1405 1567 2.045926 ATCTCCCACCTTGCGTGC 60.046 61.111 0.00 0.00 41.53 5.34
1406 1568 3.628646 ATCTCCCACCTTGCGTGCC 62.629 63.158 0.00 0.00 41.53 5.01
1410 1572 3.222855 CCACCTTGCGTGCCCAAA 61.223 61.111 0.00 0.00 41.53 3.28
1427 1589 3.853475 CCAAAGCAGGGATGAAATTGTC 58.147 45.455 0.00 0.00 0.00 3.18
1428 1590 3.512724 CCAAAGCAGGGATGAAATTGTCT 59.487 43.478 0.00 0.00 0.00 3.41
1429 1591 4.020839 CCAAAGCAGGGATGAAATTGTCTT 60.021 41.667 0.00 0.00 0.00 3.01
1430 1592 5.185635 CCAAAGCAGGGATGAAATTGTCTTA 59.814 40.000 0.00 0.00 0.00 2.10
1431 1593 5.904362 AAGCAGGGATGAAATTGTCTTAC 57.096 39.130 0.00 0.00 0.00 2.34
1432 1594 5.184892 AGCAGGGATGAAATTGTCTTACT 57.815 39.130 0.00 0.00 0.00 2.24
1433 1595 4.946157 AGCAGGGATGAAATTGTCTTACTG 59.054 41.667 0.00 0.00 0.00 2.74
1445 1617 2.100989 GTCTTACTGAGTGATCCCGGT 58.899 52.381 0.00 0.00 0.00 5.28
1449 1621 0.826715 ACTGAGTGATCCCGGTGATG 59.173 55.000 9.80 0.00 32.41 3.07
1453 1625 1.207089 GAGTGATCCCGGTGATGAACA 59.793 52.381 9.80 0.00 32.41 3.18
1456 1628 1.559219 TGATCCCGGTGATGAACATGT 59.441 47.619 9.80 0.00 32.41 3.21
1465 1637 1.019673 GATGAACATGTGCGCCTCAT 58.980 50.000 4.18 9.24 0.00 2.90
1475 1647 4.012554 CGCCTCATTCGCACGTAT 57.987 55.556 0.00 0.00 0.00 3.06
1476 1648 1.559814 CGCCTCATTCGCACGTATG 59.440 57.895 3.57 3.57 0.00 2.39
1478 1650 1.847818 GCCTCATTCGCACGTATGTA 58.152 50.000 9.07 0.00 0.00 2.29
1484 1656 4.425520 TCATTCGCACGTATGTACATTGA 58.574 39.130 14.77 5.36 0.00 2.57
1556 4529 3.636300 CAGGGGATTCAGTCTCTGACTAG 59.364 52.174 0.00 0.00 41.37 2.57
1591 4567 6.291377 TGATTAACTAACTGATGCATCTCCC 58.709 40.000 26.32 2.00 0.00 4.30
1655 4637 0.109086 GTGCTAGTGCTTCTGCTCGA 60.109 55.000 0.00 0.00 40.48 4.04
1656 4638 0.172127 TGCTAGTGCTTCTGCTCGAG 59.828 55.000 8.45 8.45 40.48 4.04
1674 4698 3.560481 TCGAGTTGTTTATTTCGTGCCAA 59.440 39.130 0.00 0.00 34.83 4.52
1680 4705 6.928492 AGTTGTTTATTTCGTGCCAAATTCAT 59.072 30.769 0.00 0.00 0.00 2.57
1703 4728 1.461897 GTTAAATGTACCTGCGTGCGT 59.538 47.619 0.00 0.00 0.00 5.24
1708 4733 2.986979 TACCTGCGTGCGTCTCCA 60.987 61.111 0.00 0.00 0.00 3.86
1726 4754 0.036952 CATTGGGACTGCTCGTGACT 60.037 55.000 0.00 0.00 0.00 3.41
1727 4755 0.687354 ATTGGGACTGCTCGTGACTT 59.313 50.000 0.00 0.00 0.00 3.01
1731 4759 0.032130 GGACTGCTCGTGACTTGACA 59.968 55.000 0.00 0.00 0.00 3.58
1800 4829 5.343593 CAGCGTTCTGTAGAAAAGACAGTAG 59.656 44.000 2.95 0.00 43.95 2.57
1849 4878 2.612493 CCCGTCCAAACCCCTCCAT 61.612 63.158 0.00 0.00 0.00 3.41
1896 4941 5.159209 CACTGATGTTTTCTCTTTCATGGC 58.841 41.667 0.00 0.00 0.00 4.40
1905 4950 4.989279 TCTCTTTCATGGCCTAAAATGC 57.011 40.909 3.32 0.00 0.00 3.56
1906 4951 4.603131 TCTCTTTCATGGCCTAAAATGCT 58.397 39.130 3.32 0.00 0.00 3.79
1908 4953 2.965572 TTCATGGCCTAAAATGCTGC 57.034 45.000 3.32 0.00 0.00 5.25
1912 4957 2.220653 TGGCCTAAAATGCTGCTTCT 57.779 45.000 3.32 0.00 0.00 2.85
1941 4987 0.529337 CAGGCTGCTCGATACCTGTG 60.529 60.000 0.00 0.00 43.86 3.66
1975 10614 0.179215 CGCTGTCGTCATTCCAAAGC 60.179 55.000 0.00 0.00 0.00 3.51
1995 10634 1.535226 CGAACTCCCAATGCGATCGTA 60.535 52.381 17.81 13.52 0.00 3.43
2007 10646 2.259618 GCGATCGTAAAGAAGCTGTCA 58.740 47.619 17.81 0.00 34.94 3.58
2011 10650 5.175856 GCGATCGTAAAGAAGCTGTCATATT 59.824 40.000 17.81 0.00 34.94 1.28
2144 13581 3.934579 GCATTTTGGTTAATTGCCAGAGG 59.065 43.478 4.19 0.00 37.22 3.69
2164 13604 3.892588 AGGGCGATAAAAGTTGGAAAACA 59.107 39.130 0.00 0.00 0.00 2.83
2198 13638 9.243637 TGTTTCTGTTTAATTCAGTGTATTTGC 57.756 29.630 0.00 0.00 34.86 3.68
2208 13648 4.778904 TCAGTGTATTTGCGCTTAAACAC 58.221 39.130 21.10 21.10 0.00 3.32
2254 13696 6.561519 ACCAGTGGTCTAGTATTAAAGCAT 57.438 37.500 9.70 0.00 0.00 3.79
2255 13697 6.349300 ACCAGTGGTCTAGTATTAAAGCATG 58.651 40.000 9.70 0.00 0.00 4.06
2284 13727 1.209504 TCTAACTCAGGAATTGCCCCG 59.790 52.381 0.00 0.00 37.37 5.73
2298 13742 6.127675 GGAATTGCCCCGTTGTACTATTTTTA 60.128 38.462 0.00 0.00 0.00 1.52
2363 13814 1.336240 GGCCATGCACTTGTTGTTCTC 60.336 52.381 0.00 0.00 0.00 2.87
2368 13819 2.229792 TGCACTTGTTGTTCTCCATCC 58.770 47.619 0.00 0.00 0.00 3.51
2374 13825 0.605319 GTTGTTCTCCATCCGTGGCA 60.605 55.000 0.00 0.00 45.63 4.92
2392 13843 2.555757 GGCATCTTTGAAGCTTCACAGT 59.444 45.455 31.58 20.72 36.59 3.55
2399 13850 3.117491 TGAAGCTTCACAGTTGAGGAG 57.883 47.619 25.16 0.00 30.19 3.69
2433 13884 4.100808 TCAAACTGGGTTGGAATTTGGAAG 59.899 41.667 0.00 0.00 32.36 3.46
2441 13892 3.534357 TGGAATTTGGAAGCACCCTTA 57.466 42.857 0.00 0.00 38.00 2.69
2492 13943 4.462483 TCAATCTTATGGAGTTTGGTTGCC 59.538 41.667 0.00 0.00 36.27 4.52
2493 13944 2.432444 TCTTATGGAGTTTGGTTGCCG 58.568 47.619 0.00 0.00 0.00 5.69
2588 14041 6.258947 GCCTACTAAGTTAATTCTTCCAGCAG 59.741 42.308 0.00 0.00 0.00 4.24
2649 14104 2.800544 CACTAAGGTTCGAACACTGGTG 59.199 50.000 28.24 24.60 0.00 4.17
2660 14115 3.247648 CGAACACTGGTGGTAGAACTTTG 59.752 47.826 5.70 0.00 34.19 2.77
2693 14193 6.797033 GCTCACAATATAAAATATCACGTGCC 59.203 38.462 11.67 0.00 0.00 5.01
2694 14194 7.197071 TCACAATATAAAATATCACGTGCCC 57.803 36.000 11.67 0.00 0.00 5.36
2798 14298 8.321353 TCATGTACTGGATCTTCAGTTGTAATT 58.679 33.333 9.52 0.00 44.74 1.40
2904 14408 2.425143 AACAGTGGTGCAGATATGGG 57.575 50.000 0.00 0.00 0.00 4.00
2915 14419 2.954318 GCAGATATGGGTGCTGTTGATT 59.046 45.455 0.00 0.00 36.71 2.57
3002 14506 5.944599 CCTCATCAGCCATCAAATATTAGCT 59.055 40.000 0.00 0.00 0.00 3.32
3199 14703 7.050970 AGTACCAAAGATATTGACGCATAGA 57.949 36.000 0.00 0.00 0.00 1.98
3292 14796 9.981114 CTTATTCTTGAAAGGTTGGTTGTTTAT 57.019 29.630 0.00 0.00 0.00 1.40
3302 14806 5.128663 AGGTTGGTTGTTTATCTGCAACTTT 59.871 36.000 7.25 0.00 43.07 2.66
3303 14807 5.234116 GGTTGGTTGTTTATCTGCAACTTTG 59.766 40.000 7.25 0.00 43.07 2.77
3304 14808 5.590530 TGGTTGTTTATCTGCAACTTTGT 57.409 34.783 7.25 0.00 43.07 2.83
3305 14809 5.347342 TGGTTGTTTATCTGCAACTTTGTG 58.653 37.500 7.25 0.00 43.07 3.33
3306 14810 5.105554 TGGTTGTTTATCTGCAACTTTGTGT 60.106 36.000 7.25 0.00 43.07 3.72
3309 14813 7.489757 GGTTGTTTATCTGCAACTTTGTGTAAA 59.510 33.333 7.25 0.00 43.07 2.01
3312 14816 9.243637 TGTTTATCTGCAACTTTGTGTAAATTC 57.756 29.630 0.00 0.00 0.00 2.17
3356 14860 4.344679 TGAAACAGATTCAACAGGGCAAAT 59.655 37.500 0.00 0.00 44.94 2.32
3513 15017 4.404640 TGAAGATATACTACCACGAGGGG 58.595 47.826 3.29 0.00 42.91 4.79
3554 15058 2.644798 AGAAAAGGATGCCTAGTGGTGT 59.355 45.455 0.00 0.00 31.13 4.16
3606 15110 7.333528 AGACATTTGTTTGAAGCTGTTAAGA 57.666 32.000 0.00 0.00 0.00 2.10
3643 15152 6.381801 ACAAAGCTTATTGTACAGCATGAAC 58.618 36.000 0.00 0.00 41.56 3.18
3651 15160 6.727824 ATTGTACAGCATGAACTAACTGAC 57.272 37.500 0.00 0.00 39.69 3.51
3670 15179 5.449812 CTGACGAATCATTCCACCTCTTGG 61.450 50.000 0.00 0.00 39.64 3.61
3696 15205 7.767198 GGTATTTCTGTTGTGCTACCATAGTTA 59.233 37.037 0.00 0.00 31.11 2.24
3702 15211 5.929992 TGTTGTGCTACCATAGTTACTCAAC 59.070 40.000 0.00 0.00 36.10 3.18
3716 15225 3.618690 ACTCAACTCCCAGTGCTAATC 57.381 47.619 0.00 0.00 0.00 1.75
3753 15262 1.208052 GCAGACATACCAGAAGGAGCA 59.792 52.381 0.00 0.00 38.69 4.26
3828 15337 3.132289 TCAACGAAGTCAACCTCTTCACT 59.868 43.478 0.00 0.00 45.00 3.41
3919 15428 1.737793 CCAACTGCGAGTACAATTCCC 59.262 52.381 0.00 0.00 0.00 3.97
3954 15463 1.806461 GACACACGAGGGAGCACTCA 61.806 60.000 0.17 0.00 37.34 3.41
4190 15702 4.583073 GTGTGTTGTAGTCAGGGGAAAATT 59.417 41.667 0.00 0.00 0.00 1.82
4191 15703 5.766174 GTGTGTTGTAGTCAGGGGAAAATTA 59.234 40.000 0.00 0.00 0.00 1.40
4192 15704 6.263617 GTGTGTTGTAGTCAGGGGAAAATTAA 59.736 38.462 0.00 0.00 0.00 1.40
4253 15766 3.500343 GGATGCACTATAGGCCCAAATT 58.500 45.455 0.00 0.00 0.00 1.82
4255 15768 4.021981 GGATGCACTATAGGCCCAAATTTC 60.022 45.833 0.00 0.00 0.00 2.17
4258 15771 5.952387 TGCACTATAGGCCCAAATTTCTAT 58.048 37.500 0.00 0.00 0.00 1.98
4260 15773 5.183904 GCACTATAGGCCCAAATTTCTATGG 59.816 44.000 0.00 6.83 36.42 2.74
4262 15775 2.548464 AGGCCCAAATTTCTATGGCA 57.452 45.000 15.51 0.00 43.96 4.92
4265 15778 3.781965 AGGCCCAAATTTCTATGGCAAAT 59.218 39.130 15.51 0.00 43.96 2.32
4299 15815 8.691661 ACTACATGTAAAAAGGTTTGAGATGT 57.308 30.769 7.06 6.22 31.47 3.06
4309 15825 8.599624 AAAAGGTTTGAGATGTAATGGATCAT 57.400 30.769 0.00 0.00 0.00 2.45
4310 15826 7.578310 AAGGTTTGAGATGTAATGGATCATG 57.422 36.000 0.00 0.00 0.00 3.07
4311 15827 5.533903 AGGTTTGAGATGTAATGGATCATGC 59.466 40.000 0.00 0.00 0.00 4.06
4312 15828 5.446709 GTTTGAGATGTAATGGATCATGCG 58.553 41.667 0.00 0.00 0.00 4.73
4336 15852 3.557228 TTTTTGCTTTTCCATGTGGCT 57.443 38.095 0.00 0.00 34.44 4.75
4341 15857 1.204704 GCTTTTCCATGTGGCTAACCC 59.795 52.381 0.00 0.00 33.59 4.11
4342 15858 2.524306 CTTTTCCATGTGGCTAACCCA 58.476 47.619 0.00 0.00 42.79 4.51
4372 15894 5.560966 TTCAGTTTCAGGTTGACTCAAAC 57.439 39.130 0.00 0.00 0.00 2.93
4449 15972 6.992123 AGAATAATGATAATGAACCACTGCGA 59.008 34.615 0.00 0.00 0.00 5.10
4457 15981 3.889196 TGAACCACTGCGATAACAAAC 57.111 42.857 0.00 0.00 0.00 2.93
4460 15984 0.446222 CCACTGCGATAACAAACCCG 59.554 55.000 0.00 0.00 0.00 5.28
4580 16104 7.603651 TGTTTCTACTTTCTCTGATCTACCAC 58.396 38.462 0.00 0.00 0.00 4.16
4582 16106 5.742063 TCTACTTTCTCTGATCTACCACGA 58.258 41.667 0.00 0.00 0.00 4.35
4599 16123 3.444034 CCACGACTTCTCTACATCCTCAA 59.556 47.826 0.00 0.00 0.00 3.02
4617 16141 4.338879 CTCAAGAGGGATCACACCAAAAT 58.661 43.478 0.00 0.00 0.00 1.82
4760 16299 1.329913 TAGCTGAATCCGCTCTGGCA 61.330 55.000 1.62 0.00 38.86 4.92
4900 16439 1.241990 CGACCCTTGAGTCCTCGTCA 61.242 60.000 0.00 0.00 32.91 4.35
4903 16442 1.978580 ACCCTTGAGTCCTCGTCAAAT 59.021 47.619 0.00 0.00 33.56 2.32
4909 16448 4.336889 TGAGTCCTCGTCAAATTTCAGT 57.663 40.909 0.00 0.00 0.00 3.41
4912 16451 4.703897 AGTCCTCGTCAAATTTCAGTTCA 58.296 39.130 0.00 0.00 0.00 3.18
4914 16453 5.237344 AGTCCTCGTCAAATTTCAGTTCAAG 59.763 40.000 0.00 0.00 0.00 3.02
4915 16454 5.236478 GTCCTCGTCAAATTTCAGTTCAAGA 59.764 40.000 0.00 0.00 0.00 3.02
4999 16538 2.833794 GCGGACATGGTCAGCTTTATA 58.166 47.619 13.04 0.00 46.84 0.98
5035 16574 2.579873 CATGAAATCTGCCCGAATCCT 58.420 47.619 0.00 0.00 0.00 3.24
5043 16585 0.036388 TGCCCGAATCCTGTGAAGAC 60.036 55.000 0.00 0.00 0.00 3.01
5044 16586 0.036388 GCCCGAATCCTGTGAAGACA 60.036 55.000 0.00 0.00 0.00 3.41
5104 16646 3.421687 CTCCGCGAGAGATGCTGCA 62.422 63.158 8.23 4.13 46.50 4.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 6.732531 ACATACATCTGCATGCACATATAC 57.267 37.500 18.46 0.00 32.57 1.47
43 44 9.983804 CTTATGCTATTTACATACATCTGCATG 57.016 33.333 0.00 0.00 38.74 4.06
126 127 0.381801 ATTTGGCATAAGGAAGCGCG 59.618 50.000 0.00 0.00 0.00 6.86
150 151 0.032403 TCGTTTACCAGACACCACCG 59.968 55.000 0.00 0.00 0.00 4.94
153 154 1.342174 GACCTCGTTTACCAGACACCA 59.658 52.381 0.00 0.00 0.00 4.17
203 204 0.167908 CCACACACACACACACACAC 59.832 55.000 0.00 0.00 0.00 3.82
204 205 0.250510 ACCACACACACACACACACA 60.251 50.000 0.00 0.00 0.00 3.72
205 206 0.446222 GACCACACACACACACACAC 59.554 55.000 0.00 0.00 0.00 3.82
229 230 3.352648 CCAGGGGTAATGTAACAACAGG 58.647 50.000 0.00 0.00 0.00 4.00
230 231 3.009695 TCCCAGGGGTAATGTAACAACAG 59.990 47.826 5.33 0.00 36.47 3.16
262 281 2.751436 TCAAATCGCAGCCCTGGC 60.751 61.111 0.00 0.00 42.33 4.85
263 282 0.465097 ATCTCAAATCGCAGCCCTGG 60.465 55.000 0.00 0.00 0.00 4.45
264 283 0.661552 CATCTCAAATCGCAGCCCTG 59.338 55.000 0.00 0.00 0.00 4.45
265 284 0.543277 TCATCTCAAATCGCAGCCCT 59.457 50.000 0.00 0.00 0.00 5.19
266 285 0.942962 CTCATCTCAAATCGCAGCCC 59.057 55.000 0.00 0.00 0.00 5.19
267 286 1.945387 TCTCATCTCAAATCGCAGCC 58.055 50.000 0.00 0.00 0.00 4.85
268 287 3.193263 TCTTCTCATCTCAAATCGCAGC 58.807 45.455 0.00 0.00 0.00 5.25
269 288 5.791367 TTTCTTCTCATCTCAAATCGCAG 57.209 39.130 0.00 0.00 0.00 5.18
270 289 5.469760 TGTTTTCTTCTCATCTCAAATCGCA 59.530 36.000 0.00 0.00 0.00 5.10
271 290 5.931532 TGTTTTCTTCTCATCTCAAATCGC 58.068 37.500 0.00 0.00 0.00 4.58
272 291 9.483062 GTAATGTTTTCTTCTCATCTCAAATCG 57.517 33.333 0.00 0.00 0.00 3.34
300 319 4.569719 ACCGGAGACCTTGATGTAAATT 57.430 40.909 9.46 0.00 0.00 1.82
312 331 1.002502 CCCCTTGAAACCGGAGACC 60.003 63.158 9.46 0.00 0.00 3.85
313 332 0.321387 GTCCCCTTGAAACCGGAGAC 60.321 60.000 9.46 0.00 0.00 3.36
331 352 2.301870 TCTAGACGGGCATGTTCAAAGT 59.698 45.455 0.00 0.00 0.00 2.66
345 366 0.386352 TCACACGCGGTTTCTAGACG 60.386 55.000 12.47 0.00 0.00 4.18
350 371 0.038526 CTAGGTCACACGCGGTTTCT 60.039 55.000 12.47 2.55 0.00 2.52
358 379 2.507102 CCGCTGCTAGGTCACACG 60.507 66.667 0.00 0.00 0.00 4.49
360 381 4.435436 CGCCGCTGCTAGGTCACA 62.435 66.667 0.00 0.00 34.43 3.58
377 398 3.665675 AAGACGGGTCAGATGCCGC 62.666 63.158 1.17 0.00 0.00 6.53
378 399 1.519455 GAAGACGGGTCAGATGCCG 60.519 63.158 1.17 0.00 0.00 5.69
379 400 0.460987 CAGAAGACGGGTCAGATGCC 60.461 60.000 1.17 0.00 0.00 4.40
380 401 0.532573 TCAGAAGACGGGTCAGATGC 59.467 55.000 1.17 0.00 0.00 3.91
383 404 0.603569 GCTTCAGAAGACGGGTCAGA 59.396 55.000 14.86 0.00 0.00 3.27
385 406 0.318441 CAGCTTCAGAAGACGGGTCA 59.682 55.000 14.86 0.00 0.00 4.02
386 407 0.318762 ACAGCTTCAGAAGACGGGTC 59.681 55.000 14.86 0.00 0.00 4.46
387 408 0.034059 CACAGCTTCAGAAGACGGGT 59.966 55.000 14.86 6.71 0.00 5.28
388 409 0.034059 ACACAGCTTCAGAAGACGGG 59.966 55.000 14.86 7.13 0.00 5.28
389 410 1.143305 CACACAGCTTCAGAAGACGG 58.857 55.000 14.86 8.47 0.00 4.79
390 411 0.510359 GCACACAGCTTCAGAAGACG 59.490 55.000 14.86 6.06 41.15 4.18
401 422 2.089980 AGATTGAATCCAGCACACAGC 58.910 47.619 0.75 0.00 46.19 4.40
402 423 3.672511 GCAAGATTGAATCCAGCACACAG 60.673 47.826 12.67 0.00 32.03 3.66
404 425 2.730090 CGCAAGATTGAATCCAGCACAC 60.730 50.000 16.26 0.00 43.02 3.82
405 426 1.469703 CGCAAGATTGAATCCAGCACA 59.530 47.619 16.26 0.00 43.02 4.57
406 427 1.202222 CCGCAAGATTGAATCCAGCAC 60.202 52.381 16.26 0.00 43.02 4.40
407 428 1.097232 CCGCAAGATTGAATCCAGCA 58.903 50.000 16.26 0.00 43.02 4.41
408 429 1.064654 GACCGCAAGATTGAATCCAGC 59.935 52.381 0.75 5.54 43.02 4.85
409 430 1.328680 CGACCGCAAGATTGAATCCAG 59.671 52.381 0.75 0.00 43.02 3.86
410 431 1.368641 CGACCGCAAGATTGAATCCA 58.631 50.000 0.75 0.00 43.02 3.41
411 432 0.028110 GCGACCGCAAGATTGAATCC 59.972 55.000 9.73 0.00 41.49 3.01
412 433 1.009829 AGCGACCGCAAGATTGAATC 58.990 50.000 16.97 0.00 44.88 2.52
413 434 0.729116 CAGCGACCGCAAGATTGAAT 59.271 50.000 16.97 0.00 44.88 2.57
414 435 0.602638 ACAGCGACCGCAAGATTGAA 60.603 50.000 16.97 0.00 44.88 2.69
415 436 1.005037 ACAGCGACCGCAAGATTGA 60.005 52.632 16.97 0.00 44.88 2.57
416 437 1.133253 CACAGCGACCGCAAGATTG 59.867 57.895 16.97 7.97 44.88 2.67
417 438 1.301716 ACACAGCGACCGCAAGATT 60.302 52.632 16.97 0.00 44.88 2.40
418 439 2.029288 CACACAGCGACCGCAAGAT 61.029 57.895 16.97 0.00 44.88 2.40
449 532 5.373262 GCTTTTTCGCAACATTTTACCATG 58.627 37.500 0.00 0.00 0.00 3.66
450 533 4.149747 CGCTTTTTCGCAACATTTTACCAT 59.850 37.500 0.00 0.00 0.00 3.55
452 535 3.731717 TCGCTTTTTCGCAACATTTTACC 59.268 39.130 0.00 0.00 0.00 2.85
466 551 4.683334 GCACGGCGCTCGCTTTTT 62.683 61.111 16.48 0.00 43.89 1.94
479 564 0.107508 ACAGGGATGGATTCAGCACG 60.108 55.000 0.00 0.00 37.84 5.34
487 572 5.579047 TCACAACATTTTACAGGGATGGAT 58.421 37.500 0.00 0.00 0.00 3.41
489 574 5.720371 TTCACAACATTTTACAGGGATGG 57.280 39.130 0.00 0.00 0.00 3.51
495 580 6.560251 GCTCGCTTTTTCACAACATTTTACAG 60.560 38.462 0.00 0.00 0.00 2.74
505 604 1.065401 CAGGTGCTCGCTTTTTCACAA 59.935 47.619 0.00 0.00 0.00 3.33
508 607 1.654220 GCAGGTGCTCGCTTTTTCA 59.346 52.632 0.00 0.00 38.21 2.69
536 635 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
537 636 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
538 637 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
539 638 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
540 639 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
541 640 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
545 644 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
577 676 6.963049 ATACAATTTTGAGACCGTGTCTAC 57.037 37.500 6.55 2.86 43.53 2.59
578 677 7.833786 AGTATACAATTTTGAGACCGTGTCTA 58.166 34.615 5.50 0.00 43.53 2.59
579 678 6.698380 AGTATACAATTTTGAGACCGTGTCT 58.302 36.000 5.50 6.29 46.42 3.41
580 679 6.963049 AGTATACAATTTTGAGACCGTGTC 57.037 37.500 5.50 0.00 0.00 3.67
581 680 7.039882 CCTAGTATACAATTTTGAGACCGTGT 58.960 38.462 5.50 0.00 0.00 4.49
582 681 7.262772 TCCTAGTATACAATTTTGAGACCGTG 58.737 38.462 5.50 0.00 0.00 4.94
584 683 8.141909 TGATCCTAGTATACAATTTTGAGACCG 58.858 37.037 5.50 0.00 0.00 4.79
585 684 9.262358 GTGATCCTAGTATACAATTTTGAGACC 57.738 37.037 5.50 0.00 0.00 3.85
587 686 8.429641 GGGTGATCCTAGTATACAATTTTGAGA 58.570 37.037 5.50 0.00 0.00 3.27
588 687 7.385205 CGGGTGATCCTAGTATACAATTTTGAG 59.615 40.741 5.50 0.00 0.00 3.02
589 688 7.214381 CGGGTGATCCTAGTATACAATTTTGA 58.786 38.462 5.50 0.00 0.00 2.69
590 689 6.073222 GCGGGTGATCCTAGTATACAATTTTG 60.073 42.308 5.50 0.00 0.00 2.44
592 691 5.071250 TGCGGGTGATCCTAGTATACAATTT 59.929 40.000 5.50 0.00 0.00 1.82
593 692 4.591498 TGCGGGTGATCCTAGTATACAATT 59.409 41.667 5.50 0.00 0.00 2.32
594 693 4.157246 TGCGGGTGATCCTAGTATACAAT 58.843 43.478 5.50 0.00 0.00 2.71
595 694 3.568443 TGCGGGTGATCCTAGTATACAA 58.432 45.455 5.50 0.00 0.00 2.41
596 695 3.232720 TGCGGGTGATCCTAGTATACA 57.767 47.619 5.50 0.00 0.00 2.29
597 696 4.595762 TTTGCGGGTGATCCTAGTATAC 57.404 45.455 0.00 0.00 0.00 1.47
598 697 5.617528 TTTTTGCGGGTGATCCTAGTATA 57.382 39.130 0.00 0.00 0.00 1.47
599 698 4.497291 TTTTTGCGGGTGATCCTAGTAT 57.503 40.909 0.00 0.00 0.00 2.12
601 700 2.871096 TTTTTGCGGGTGATCCTAGT 57.129 45.000 0.00 0.00 0.00 2.57
641 740 8.657712 ACCAGATTAAGAAAAACCTACTGTAGT 58.342 33.333 13.42 0.00 0.00 2.73
642 741 8.936864 CACCAGATTAAGAAAAACCTACTGTAG 58.063 37.037 7.87 7.87 0.00 2.74
643 742 7.389607 GCACCAGATTAAGAAAAACCTACTGTA 59.610 37.037 0.00 0.00 0.00 2.74
644 743 6.206829 GCACCAGATTAAGAAAAACCTACTGT 59.793 38.462 0.00 0.00 0.00 3.55
645 744 6.612306 GCACCAGATTAAGAAAAACCTACTG 58.388 40.000 0.00 0.00 0.00 2.74
646 745 5.411669 CGCACCAGATTAAGAAAAACCTACT 59.588 40.000 0.00 0.00 0.00 2.57
647 746 5.391629 CCGCACCAGATTAAGAAAAACCTAC 60.392 44.000 0.00 0.00 0.00 3.18
648 747 4.698304 CCGCACCAGATTAAGAAAAACCTA 59.302 41.667 0.00 0.00 0.00 3.08
649 748 3.506067 CCGCACCAGATTAAGAAAAACCT 59.494 43.478 0.00 0.00 0.00 3.50
656 755 0.107703 CAGGCCGCACCAGATTAAGA 60.108 55.000 0.00 0.00 43.14 2.10
657 756 1.097547 CCAGGCCGCACCAGATTAAG 61.098 60.000 0.00 0.00 43.14 1.85
679 778 7.037438 AGGAAAATTCGGATGAAATTCATGTG 58.963 34.615 13.82 5.53 37.20 3.21
680 779 7.123247 AGAGGAAAATTCGGATGAAATTCATGT 59.877 33.333 13.82 0.00 37.20 3.21
683 782 6.625740 GCAGAGGAAAATTCGGATGAAATTCA 60.626 38.462 0.00 0.00 37.71 2.57
685 784 5.420104 AGCAGAGGAAAATTCGGATGAAATT 59.580 36.000 0.00 0.00 37.71 1.82
686 785 4.952335 AGCAGAGGAAAATTCGGATGAAAT 59.048 37.500 0.00 0.00 37.71 2.17
687 786 4.335416 AGCAGAGGAAAATTCGGATGAAA 58.665 39.130 0.00 0.00 37.71 2.69
688 787 3.941483 GAGCAGAGGAAAATTCGGATGAA 59.059 43.478 0.00 0.00 38.76 2.57
690 789 2.286294 CGAGCAGAGGAAAATTCGGATG 59.714 50.000 0.00 0.00 0.00 3.51
691 790 2.555199 CGAGCAGAGGAAAATTCGGAT 58.445 47.619 0.00 0.00 0.00 4.18
693 792 1.009829 CCGAGCAGAGGAAAATTCGG 58.990 55.000 0.00 0.00 41.15 4.30
694 793 2.010145 TCCGAGCAGAGGAAAATTCG 57.990 50.000 0.00 0.00 34.33 3.34
696 795 2.019984 GCATCCGAGCAGAGGAAAATT 58.980 47.619 0.00 0.00 41.69 1.82
699 798 0.176680 GAGCATCCGAGCAGAGGAAA 59.823 55.000 0.00 0.00 41.69 3.13
701 800 0.685785 AAGAGCATCCGAGCAGAGGA 60.686 55.000 0.00 0.00 42.69 3.71
702 801 0.530211 CAAGAGCATCCGAGCAGAGG 60.530 60.000 0.00 0.00 36.85 3.69
705 804 2.974845 CTCAAGAGCATCCGAGCAG 58.025 57.895 0.00 0.00 36.85 4.24
716 815 4.547532 AGTTACTACAACACGCTCAAGAG 58.452 43.478 0.00 0.00 0.00 2.85
717 816 4.579454 AGTTACTACAACACGCTCAAGA 57.421 40.909 0.00 0.00 0.00 3.02
718 817 4.506654 ACAAGTTACTACAACACGCTCAAG 59.493 41.667 0.00 0.00 0.00 3.02
719 818 4.435425 ACAAGTTACTACAACACGCTCAA 58.565 39.130 0.00 0.00 0.00 3.02
720 819 4.049546 ACAAGTTACTACAACACGCTCA 57.950 40.909 0.00 0.00 0.00 4.26
721 820 5.218139 AGTACAAGTTACTACAACACGCTC 58.782 41.667 0.00 0.00 0.00 5.03
722 821 5.192327 AGTACAAGTTACTACAACACGCT 57.808 39.130 0.00 0.00 0.00 5.07
723 822 4.383948 GGAGTACAAGTTACTACAACACGC 59.616 45.833 0.00 0.00 0.00 5.34
724 823 4.919754 GGGAGTACAAGTTACTACAACACG 59.080 45.833 0.00 0.00 30.01 4.49
726 825 5.244626 GGAGGGAGTACAAGTTACTACAACA 59.755 44.000 0.00 0.00 30.01 3.33
727 826 5.620879 CGGAGGGAGTACAAGTTACTACAAC 60.621 48.000 0.00 0.00 30.01 3.32
728 827 4.460382 CGGAGGGAGTACAAGTTACTACAA 59.540 45.833 0.00 0.00 30.01 2.41
729 828 4.012374 CGGAGGGAGTACAAGTTACTACA 58.988 47.826 0.00 0.00 30.01 2.74
730 829 4.013050 ACGGAGGGAGTACAAGTTACTAC 58.987 47.826 0.00 0.00 0.00 2.73
731 830 4.265073 GACGGAGGGAGTACAAGTTACTA 58.735 47.826 0.00 0.00 0.00 1.82
733 832 2.165234 GGACGGAGGGAGTACAAGTTAC 59.835 54.545 0.00 0.00 0.00 2.50
734 833 2.225091 TGGACGGAGGGAGTACAAGTTA 60.225 50.000 0.00 0.00 27.89 2.24
737 836 1.263356 TTGGACGGAGGGAGTACAAG 58.737 55.000 0.00 0.00 37.50 3.16
738 837 1.719529 TTTGGACGGAGGGAGTACAA 58.280 50.000 0.00 0.00 40.35 2.41
739 838 1.946984 ATTTGGACGGAGGGAGTACA 58.053 50.000 0.00 0.00 0.00 2.90
740 839 4.831710 AGTATATTTGGACGGAGGGAGTAC 59.168 45.833 0.00 0.00 0.00 2.73
741 840 5.070823 AGTATATTTGGACGGAGGGAGTA 57.929 43.478 0.00 0.00 0.00 2.59
743 842 4.101119 ACAAGTATATTTGGACGGAGGGAG 59.899 45.833 12.09 0.00 32.32 4.30
746 845 4.049186 CGACAAGTATATTTGGACGGAGG 58.951 47.826 12.09 0.00 32.62 4.30
747 846 4.928601 TCGACAAGTATATTTGGACGGAG 58.071 43.478 20.17 5.66 34.92 4.63
748 847 4.987408 TCGACAAGTATATTTGGACGGA 57.013 40.909 20.17 8.29 34.92 4.69
750 849 6.880822 TTCTTCGACAAGTATATTTGGACG 57.119 37.500 12.09 14.95 35.22 4.79
753 852 7.471721 TGCATTTCTTCGACAAGTATATTTGG 58.528 34.615 12.09 0.00 32.32 3.28
760 859 9.340695 CATTTTTATGCATTTCTTCGACAAGTA 57.659 29.630 3.54 0.00 0.00 2.24
761 860 8.081633 TCATTTTTATGCATTTCTTCGACAAGT 58.918 29.630 3.54 0.00 0.00 3.16
762 861 8.451687 TCATTTTTATGCATTTCTTCGACAAG 57.548 30.769 3.54 0.00 0.00 3.16
764 863 8.862074 CATTCATTTTTATGCATTTCTTCGACA 58.138 29.630 3.54 0.00 0.00 4.35
765 864 8.863049 ACATTCATTTTTATGCATTTCTTCGAC 58.137 29.630 3.54 0.00 0.00 4.20
766 865 8.984891 ACATTCATTTTTATGCATTTCTTCGA 57.015 26.923 3.54 0.00 0.00 3.71
805 904 8.690884 CGGAGGAATGAATGTATCTAGATGTAT 58.309 37.037 15.79 6.61 0.00 2.29
806 905 7.888546 TCGGAGGAATGAATGTATCTAGATGTA 59.111 37.037 15.79 4.44 0.00 2.29
807 906 6.721668 TCGGAGGAATGAATGTATCTAGATGT 59.278 38.462 15.79 0.00 0.00 3.06
808 907 7.032580 GTCGGAGGAATGAATGTATCTAGATG 58.967 42.308 15.79 0.00 0.00 2.90
809 908 6.127869 CGTCGGAGGAATGAATGTATCTAGAT 60.128 42.308 10.73 10.73 0.00 1.98
811 910 5.181433 TCGTCGGAGGAATGAATGTATCTAG 59.819 44.000 0.00 0.00 0.00 2.43
813 912 3.889538 TCGTCGGAGGAATGAATGTATCT 59.110 43.478 0.00 0.00 0.00 1.98
815 914 3.637229 ACTCGTCGGAGGAATGAATGTAT 59.363 43.478 1.73 0.00 44.93 2.29
816 915 3.021695 ACTCGTCGGAGGAATGAATGTA 58.978 45.455 1.73 0.00 44.93 2.29
818 917 2.586258 ACTCGTCGGAGGAATGAATG 57.414 50.000 1.73 0.00 44.93 2.67
821 920 3.067742 GGAAATACTCGTCGGAGGAATGA 59.932 47.826 1.73 0.00 44.93 2.57
822 921 3.381949 GGAAATACTCGTCGGAGGAATG 58.618 50.000 1.73 0.00 44.93 2.67
823 922 2.034305 CGGAAATACTCGTCGGAGGAAT 59.966 50.000 1.73 0.00 44.93 3.01
824 923 1.402968 CGGAAATACTCGTCGGAGGAA 59.597 52.381 1.73 0.00 44.93 3.36
825 924 1.019673 CGGAAATACTCGTCGGAGGA 58.980 55.000 0.00 0.00 44.93 3.71
826 925 0.030369 CCGGAAATACTCGTCGGAGG 59.970 60.000 0.00 0.00 44.93 4.30
827 926 1.019673 TCCGGAAATACTCGTCGGAG 58.980 55.000 0.00 0.00 43.84 4.63
828 927 0.734889 GTCCGGAAATACTCGTCGGA 59.265 55.000 5.23 0.00 46.06 4.55
829 928 0.590732 CGTCCGGAAATACTCGTCGG 60.591 60.000 5.23 0.00 41.80 4.79
830 929 0.590732 CCGTCCGGAAATACTCGTCG 60.591 60.000 5.23 1.25 37.50 5.12
831 930 0.734889 TCCGTCCGGAAATACTCGTC 59.265 55.000 5.23 0.00 42.05 4.20
832 931 0.737219 CTCCGTCCGGAAATACTCGT 59.263 55.000 5.23 0.00 44.66 4.18
833 932 0.030369 CCTCCGTCCGGAAATACTCG 59.970 60.000 5.23 3.90 44.66 4.18
834 933 0.388294 CCCTCCGTCCGGAAATACTC 59.612 60.000 5.23 0.00 44.66 2.59
835 934 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
836 935 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
837 936 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
838 937 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
839 938 0.251742 TTACTCCCTCCGTCCGGAAA 60.252 55.000 5.23 0.00 44.66 3.13
840 939 0.682209 CTTACTCCCTCCGTCCGGAA 60.682 60.000 5.23 0.00 44.66 4.30
841 940 1.077212 CTTACTCCCTCCGTCCGGA 60.077 63.158 0.00 0.00 42.90 5.14
842 941 0.969409 AACTTACTCCCTCCGTCCGG 60.969 60.000 0.00 0.00 0.00 5.14
843 942 0.172803 CAACTTACTCCCTCCGTCCG 59.827 60.000 0.00 0.00 0.00 4.79
844 943 1.264295 ACAACTTACTCCCTCCGTCC 58.736 55.000 0.00 0.00 0.00 4.79
845 944 3.675502 GCTTACAACTTACTCCCTCCGTC 60.676 52.174 0.00 0.00 0.00 4.79
846 945 2.233186 GCTTACAACTTACTCCCTCCGT 59.767 50.000 0.00 0.00 0.00 4.69
847 946 2.734492 CGCTTACAACTTACTCCCTCCG 60.734 54.545 0.00 0.00 0.00 4.63
848 947 2.494870 TCGCTTACAACTTACTCCCTCC 59.505 50.000 0.00 0.00 0.00 4.30
849 948 3.429135 CCTCGCTTACAACTTACTCCCTC 60.429 52.174 0.00 0.00 0.00 4.30
850 949 2.496470 CCTCGCTTACAACTTACTCCCT 59.504 50.000 0.00 0.00 0.00 4.20
851 950 2.418334 CCCTCGCTTACAACTTACTCCC 60.418 54.545 0.00 0.00 0.00 4.30
852 951 2.494870 TCCCTCGCTTACAACTTACTCC 59.505 50.000 0.00 0.00 0.00 3.85
853 952 3.429135 CCTCCCTCGCTTACAACTTACTC 60.429 52.174 0.00 0.00 0.00 2.59
854 953 2.496470 CCTCCCTCGCTTACAACTTACT 59.504 50.000 0.00 0.00 0.00 2.24
855 954 2.418334 CCCTCCCTCGCTTACAACTTAC 60.418 54.545 0.00 0.00 0.00 2.34
856 955 1.829222 CCCTCCCTCGCTTACAACTTA 59.171 52.381 0.00 0.00 0.00 2.24
857 956 0.613777 CCCTCCCTCGCTTACAACTT 59.386 55.000 0.00 0.00 0.00 2.66
858 957 1.265454 CCCCTCCCTCGCTTACAACT 61.265 60.000 0.00 0.00 0.00 3.16
859 958 1.221021 CCCCTCCCTCGCTTACAAC 59.779 63.158 0.00 0.00 0.00 3.32
860 959 0.976073 CTCCCCTCCCTCGCTTACAA 60.976 60.000 0.00 0.00 0.00 2.41
861 960 1.381327 CTCCCCTCCCTCGCTTACA 60.381 63.158 0.00 0.00 0.00 2.41
862 961 2.134933 CCTCCCCTCCCTCGCTTAC 61.135 68.421 0.00 0.00 0.00 2.34
863 962 2.282446 CCTCCCCTCCCTCGCTTA 59.718 66.667 0.00 0.00 0.00 3.09
864 963 3.684628 TCCTCCCCTCCCTCGCTT 61.685 66.667 0.00 0.00 0.00 4.68
865 964 4.150454 CTCCTCCCCTCCCTCGCT 62.150 72.222 0.00 0.00 0.00 4.93
867 966 3.430497 TCCTCCTCCCCTCCCTCG 61.430 72.222 0.00 0.00 0.00 4.63
868 967 1.595058 TTCTCCTCCTCCCCTCCCTC 61.595 65.000 0.00 0.00 0.00 4.30
869 968 1.550374 TTCTCCTCCTCCCCTCCCT 60.550 63.158 0.00 0.00 0.00 4.20
870 969 1.074850 CTTCTCCTCCTCCCCTCCC 60.075 68.421 0.00 0.00 0.00 4.30
871 970 0.105709 CTCTTCTCCTCCTCCCCTCC 60.106 65.000 0.00 0.00 0.00 4.30
872 971 0.930726 TCTCTTCTCCTCCTCCCCTC 59.069 60.000 0.00 0.00 0.00 4.30
873 972 1.290732 CTTCTCTTCTCCTCCTCCCCT 59.709 57.143 0.00 0.00 0.00 4.79
874 973 1.289530 TCTTCTCTTCTCCTCCTCCCC 59.710 57.143 0.00 0.00 0.00 4.81
875 974 2.838637 TCTTCTCTTCTCCTCCTCCC 57.161 55.000 0.00 0.00 0.00 4.30
883 982 3.673902 AGGCTGCTTTTCTTCTCTTCTC 58.326 45.455 0.00 0.00 0.00 2.87
914 1013 3.933542 GAGGGAGGGGCACTGGAGT 62.934 68.421 0.00 0.00 0.00 3.85
923 1027 2.525381 CCAGATCGGAGGGAGGGG 60.525 72.222 0.00 0.00 36.56 4.79
974 1087 3.787001 CTCCTTCCCTCCCGTGGC 61.787 72.222 0.00 0.00 0.00 5.01
977 1090 2.364961 CTCCTCCTTCCCTCCCGT 59.635 66.667 0.00 0.00 0.00 5.28
1189 1331 1.618030 GCCAGGAGAGGAGAGGAGA 59.382 63.158 0.00 0.00 0.00 3.71
1190 1332 1.457455 GGCCAGGAGAGGAGAGGAG 60.457 68.421 0.00 0.00 0.00 3.69
1191 1333 2.693017 GGCCAGGAGAGGAGAGGA 59.307 66.667 0.00 0.00 0.00 3.71
1237 1384 4.424476 GATCGATCGAGTAACAGCAAAC 57.576 45.455 23.84 0.00 0.00 2.93
1264 1411 0.972134 AGCATCATGGATCGACCGAT 59.028 50.000 4.42 4.42 42.61 4.18
1265 1412 0.752658 AAGCATCATGGATCGACCGA 59.247 50.000 0.00 0.00 42.61 4.69
1266 1413 0.863799 CAAGCATCATGGATCGACCG 59.136 55.000 0.00 0.00 42.61 4.79
1267 1414 0.590195 GCAAGCATCATGGATCGACC 59.410 55.000 0.00 0.00 39.54 4.79
1268 1415 1.590932 AGCAAGCATCATGGATCGAC 58.409 50.000 0.00 0.00 0.00 4.20
1269 1416 2.102925 TGTAGCAAGCATCATGGATCGA 59.897 45.455 0.00 0.00 0.00 3.59
1270 1417 2.479275 CTGTAGCAAGCATCATGGATCG 59.521 50.000 0.00 0.00 0.00 3.69
1271 1418 2.225963 GCTGTAGCAAGCATCATGGATC 59.774 50.000 0.00 0.00 43.01 3.36
1272 1419 2.228059 GCTGTAGCAAGCATCATGGAT 58.772 47.619 0.00 0.00 43.01 3.41
1273 1420 1.671979 GCTGTAGCAAGCATCATGGA 58.328 50.000 0.00 0.00 43.01 3.41
1328 1475 1.354337 CGTCAGTCAATCCGCACTGG 61.354 60.000 0.34 0.00 40.49 4.00
1330 1477 1.079819 CCGTCAGTCAATCCGCACT 60.080 57.895 0.00 0.00 0.00 4.40
1332 1479 2.264480 CCCGTCAGTCAATCCGCA 59.736 61.111 0.00 0.00 0.00 5.69
1336 1483 1.305930 GGCAACCCCGTCAGTCAATC 61.306 60.000 0.00 0.00 0.00 2.67
1338 1485 2.112297 GGCAACCCCGTCAGTCAA 59.888 61.111 0.00 0.00 0.00 3.18
1357 1511 6.923508 AGTCGATGCAGTATGATTAATCGAAA 59.076 34.615 10.80 0.00 42.64 3.46
1360 1514 6.584184 AGAAGTCGATGCAGTATGATTAATCG 59.416 38.462 10.80 0.00 39.69 3.34
1363 1517 5.463392 GCAGAAGTCGATGCAGTATGATTAA 59.537 40.000 3.89 0.00 42.11 1.40
1369 1523 2.967599 TGCAGAAGTCGATGCAGTAT 57.032 45.000 7.31 0.00 46.97 2.12
1379 1541 0.908198 AGGTGGGAGATGCAGAAGTC 59.092 55.000 0.00 0.00 0.00 3.01
1395 1557 3.605664 GCTTTGGGCACGCAAGGT 61.606 61.111 10.47 0.00 46.39 3.50
1406 1568 3.512724 AGACAATTTCATCCCTGCTTTGG 59.487 43.478 0.00 0.00 0.00 3.28
1407 1569 4.796038 AGACAATTTCATCCCTGCTTTG 57.204 40.909 0.00 0.00 0.00 2.77
1408 1570 6.012745 AGTAAGACAATTTCATCCCTGCTTT 58.987 36.000 0.00 0.00 0.00 3.51
1409 1571 5.416952 CAGTAAGACAATTTCATCCCTGCTT 59.583 40.000 0.00 0.00 0.00 3.91
1410 1572 4.946157 CAGTAAGACAATTTCATCCCTGCT 59.054 41.667 0.00 0.00 0.00 4.24
1413 1575 6.013379 TCACTCAGTAAGACAATTTCATCCCT 60.013 38.462 0.00 0.00 0.00 4.20
1415 1577 7.011857 GGATCACTCAGTAAGACAATTTCATCC 59.988 40.741 0.00 0.00 0.00 3.51
1417 1579 6.825721 GGGATCACTCAGTAAGACAATTTCAT 59.174 38.462 0.00 0.00 0.00 2.57
1418 1580 6.173339 GGGATCACTCAGTAAGACAATTTCA 58.827 40.000 0.00 0.00 0.00 2.69
1419 1581 5.292101 CGGGATCACTCAGTAAGACAATTTC 59.708 44.000 0.00 0.00 0.00 2.17
1422 1584 3.133003 CCGGGATCACTCAGTAAGACAAT 59.867 47.826 0.00 0.00 0.00 2.71
1423 1585 2.496070 CCGGGATCACTCAGTAAGACAA 59.504 50.000 0.00 0.00 0.00 3.18
1425 1587 2.100989 ACCGGGATCACTCAGTAAGAC 58.899 52.381 6.32 0.00 0.00 3.01
1427 1589 2.100197 TCACCGGGATCACTCAGTAAG 58.900 52.381 6.32 0.00 0.00 2.34
1428 1590 2.225382 TCACCGGGATCACTCAGTAA 57.775 50.000 6.32 0.00 0.00 2.24
1429 1591 2.031870 CATCACCGGGATCACTCAGTA 58.968 52.381 6.32 0.00 32.57 2.74
1430 1592 0.826715 CATCACCGGGATCACTCAGT 59.173 55.000 6.32 0.00 32.57 3.41
1431 1593 1.114627 TCATCACCGGGATCACTCAG 58.885 55.000 6.32 0.00 32.57 3.35
1432 1594 1.207089 GTTCATCACCGGGATCACTCA 59.793 52.381 6.32 0.00 32.57 3.41
1433 1595 1.207089 TGTTCATCACCGGGATCACTC 59.793 52.381 6.32 0.00 32.57 3.51
1445 1617 0.321475 TGAGGCGCACATGTTCATCA 60.321 50.000 10.83 0.00 0.00 3.07
1449 1621 0.247814 CGAATGAGGCGCACATGTTC 60.248 55.000 17.41 12.70 0.00 3.18
1465 1637 3.553917 CCATCAATGTACATACGTGCGAA 59.446 43.478 9.21 0.00 0.00 4.70
1470 1642 5.236478 GCTAAAGCCATCAATGTACATACGT 59.764 40.000 9.21 0.00 34.31 3.57
1471 1643 5.466728 AGCTAAAGCCATCAATGTACATACG 59.533 40.000 9.21 3.79 43.38 3.06
1474 1646 6.016777 GCTAAGCTAAAGCCATCAATGTACAT 60.017 38.462 1.41 1.41 43.38 2.29
1475 1647 5.296780 GCTAAGCTAAAGCCATCAATGTACA 59.703 40.000 9.35 0.00 43.38 2.90
1476 1648 5.296780 TGCTAAGCTAAAGCCATCAATGTAC 59.703 40.000 16.14 0.00 43.38 2.90
1478 1650 4.272489 TGCTAAGCTAAAGCCATCAATGT 58.728 39.130 16.14 0.00 43.38 2.71
1484 1656 2.091665 ACCCATGCTAAGCTAAAGCCAT 60.092 45.455 16.14 8.58 43.38 4.40
1556 4529 6.147821 TCAGTTAGTTAATCAGCTGCAAGTTC 59.852 38.462 9.47 0.00 35.30 3.01
1591 4567 4.513519 CAGCATGCCAATTGCCAG 57.486 55.556 15.66 0.00 41.06 4.85
1643 4622 1.953559 AAACAACTCGAGCAGAAGCA 58.046 45.000 13.61 0.00 45.49 3.91
1655 4637 6.276847 TGAATTTGGCACGAAATAAACAACT 58.723 32.000 0.00 0.00 0.00 3.16
1656 4638 6.517914 TGAATTTGGCACGAAATAAACAAC 57.482 33.333 0.00 0.00 0.00 3.32
1674 4698 8.181573 CACGCAGGTACATTTAACTTATGAATT 58.818 33.333 0.00 0.00 0.00 2.17
1680 4705 3.368539 CGCACGCAGGTACATTTAACTTA 59.631 43.478 0.00 0.00 0.00 2.24
1703 4728 0.904865 ACGAGCAGTCCCAATGGAGA 60.905 55.000 0.00 0.00 42.85 3.71
1708 4733 0.687354 AAGTCACGAGCAGTCCCAAT 59.313 50.000 0.00 0.00 0.00 3.16
1726 4754 6.295249 TGTCAGGATAACACAGAATTGTCAA 58.705 36.000 0.00 0.00 34.62 3.18
1727 4755 5.863965 TGTCAGGATAACACAGAATTGTCA 58.136 37.500 0.00 0.00 34.62 3.58
1731 4759 4.641989 GCCATGTCAGGATAACACAGAATT 59.358 41.667 0.00 0.00 0.00 2.17
1781 4810 8.008513 ACAACTCTACTGTCTTTTCTACAGAA 57.991 34.615 10.02 0.00 45.89 3.02
1867 4896 9.903682 ATGAAAGAGAAAACATCAGTGTAAATG 57.096 29.630 0.00 0.00 37.67 2.32
1871 4916 6.072508 GCCATGAAAGAGAAAACATCAGTGTA 60.073 38.462 0.00 0.00 37.67 2.90
1877 4922 6.515272 TTAGGCCATGAAAGAGAAAACATC 57.485 37.500 5.01 0.00 0.00 3.06
1878 4923 6.916360 TTTAGGCCATGAAAGAGAAAACAT 57.084 33.333 5.01 0.00 0.00 2.71
1879 4924 6.723298 TTTTAGGCCATGAAAGAGAAAACA 57.277 33.333 5.01 0.00 0.00 2.83
1880 4925 6.091305 GCATTTTAGGCCATGAAAGAGAAAAC 59.909 38.462 5.01 0.00 0.00 2.43
1896 4941 4.425577 ACGAAAGAAGCAGCATTTTAGG 57.574 40.909 0.00 0.00 0.00 2.69
1905 4950 2.413453 GCCTGTAGAACGAAAGAAGCAG 59.587 50.000 0.00 0.00 0.00 4.24
1906 4951 2.037251 AGCCTGTAGAACGAAAGAAGCA 59.963 45.455 0.00 0.00 0.00 3.91
1908 4953 2.413453 GCAGCCTGTAGAACGAAAGAAG 59.587 50.000 0.00 0.00 0.00 2.85
1912 4957 1.668919 CGAGCAGCCTGTAGAACGAAA 60.669 52.381 0.00 0.00 0.00 3.46
1941 4987 0.879400 CAGCGTCTGGATCATCTGCC 60.879 60.000 0.00 0.00 0.00 4.85
1975 10614 0.806102 ACGATCGCATTGGGAGTTCG 60.806 55.000 16.60 19.20 42.07 3.95
1995 10634 9.066892 TCAACTGTTAAATATGACAGCTTCTTT 57.933 29.630 11.84 0.33 44.68 2.52
2007 10646 6.487331 TGTCCCGTTTGTCAACTGTTAAATAT 59.513 34.615 0.00 0.00 0.00 1.28
2011 10650 3.607741 TGTCCCGTTTGTCAACTGTTAA 58.392 40.909 0.00 0.00 0.00 2.01
2208 13648 0.955178 AGTGACAGGATATCCTCGCG 59.045 55.000 22.02 13.24 46.65 5.87
2211 13651 4.162320 TGGTTCAAGTGACAGGATATCCTC 59.838 45.833 22.02 12.37 46.65 3.71
2226 13668 7.064728 GCTTTAATACTAGACCACTGGTTCAAG 59.935 40.741 1.13 3.31 38.69 3.02
2229 13671 6.403878 TGCTTTAATACTAGACCACTGGTTC 58.596 40.000 1.13 0.00 38.69 3.62
2254 13696 5.738619 TTCCTGAGTTAGAGTTATGCACA 57.261 39.130 0.00 0.00 0.00 4.57
2255 13697 6.457528 GCAATTCCTGAGTTAGAGTTATGCAC 60.458 42.308 0.00 0.00 0.00 4.57
2325 13776 3.071312 TGGCCAAACATGAAGCTCAAAAT 59.929 39.130 0.61 0.00 0.00 1.82
2368 13819 1.536766 TGAAGCTTCAAAGATGCCACG 59.463 47.619 26.61 0.00 33.95 4.94
2374 13825 4.518211 CCTCAACTGTGAAGCTTCAAAGAT 59.482 41.667 40.78 31.32 43.75 2.40
2392 13843 2.942804 TGAAAACCATGTGCTCCTCAA 58.057 42.857 0.00 0.00 0.00 3.02
2399 13850 2.158971 ACCCAGTTTGAAAACCATGTGC 60.159 45.455 2.34 0.00 39.71 4.57
2433 13884 6.327279 AGTAAATTGTGAACTTAAGGGTGC 57.673 37.500 7.53 0.00 0.00 5.01
2441 13892 7.093509 ACAGGGTTTCAAGTAAATTGTGAACTT 60.094 33.333 0.00 0.00 40.05 2.66
2560 14013 7.023171 TGGAAGAATTAACTTAGTAGGCCAA 57.977 36.000 5.01 0.00 0.00 4.52
2572 14025 8.507524 ACTATTTACCTGCTGGAAGAATTAAC 57.492 34.615 17.64 0.00 34.07 2.01
2621 14076 4.389077 GTGTTCGAACCTTAGTGGATTCTG 59.611 45.833 24.78 0.00 39.71 3.02
2649 14104 1.807142 GCAGGCACTCAAAGTTCTACC 59.193 52.381 0.00 0.00 34.60 3.18
2660 14115 5.818136 TTTTATATTGTGAGCAGGCACTC 57.182 39.130 0.00 0.95 39.49 3.51
2693 14193 6.154203 TGCTCTAGACACAATGAATAGAGG 57.846 41.667 16.52 6.09 36.98 3.69
2694 14194 7.763528 AGTTTGCTCTAGACACAATGAATAGAG 59.236 37.037 13.22 13.22 38.19 2.43
2740 14240 6.086785 AGAGGTGGTAATAAGCTATTCGTC 57.913 41.667 0.00 0.00 0.00 4.20
2904 14408 4.928661 ATGTACTCGAAATCAACAGCAC 57.071 40.909 0.00 0.00 0.00 4.40
2915 14419 7.609760 ATTTGCATTTCTGTATGTACTCGAA 57.390 32.000 0.00 0.00 0.00 3.71
3002 14506 4.730613 GCAGAACAACTTTTGAGAGCGAAA 60.731 41.667 0.00 0.00 0.00 3.46
3199 14703 5.221742 GCTATACCAGGCTTGAGGAAATAGT 60.222 44.000 0.00 0.00 32.25 2.12
3292 14796 8.770438 AAAAAGAATTTACACAAAGTTGCAGA 57.230 26.923 0.00 0.00 37.28 4.26
3314 14818 6.531594 TGTTTCATGCATCAACGTAACAAAAA 59.468 30.769 0.00 0.00 0.00 1.94
3322 14826 4.216042 TGAATCTGTTTCATGCATCAACGT 59.784 37.500 0.00 0.00 39.44 3.99
3323 14827 4.725359 TGAATCTGTTTCATGCATCAACG 58.275 39.130 0.00 0.67 39.44 4.10
3324 14828 5.921976 TGTTGAATCTGTTTCATGCATCAAC 59.078 36.000 13.06 13.06 43.73 3.18
3329 14833 3.256383 CCCTGTTGAATCTGTTTCATGCA 59.744 43.478 2.27 0.00 43.73 3.96
3330 14834 3.841643 CCCTGTTGAATCTGTTTCATGC 58.158 45.455 2.27 0.85 43.73 4.06
3332 14836 3.499338 TGCCCTGTTGAATCTGTTTCAT 58.501 40.909 2.27 0.00 43.73 2.57
3356 14860 3.461061 CGCCAGAGATATCTGCAAAGAA 58.539 45.455 10.74 0.00 36.46 2.52
3432 14936 2.086869 CGTTTGATTGCATCACCCTCT 58.913 47.619 0.00 0.00 39.39 3.69
3513 15017 0.035439 TTTCGTCCCAAGGCTCCATC 60.035 55.000 0.00 0.00 0.00 3.51
3554 15058 8.584157 AGTTAATGCAGAAAATGTAAATGGACA 58.416 29.630 0.00 0.00 0.00 4.02
3571 15075 9.462174 CTTCAAACAAATGTCTAAGTTAATGCA 57.538 29.630 0.00 0.00 0.00 3.96
3637 15146 6.313658 TGGAATGATTCGTCAGTTAGTTCATG 59.686 38.462 0.00 0.00 0.00 3.07
3643 15152 4.759782 AGGTGGAATGATTCGTCAGTTAG 58.240 43.478 0.00 0.00 0.00 2.34
3670 15179 6.113411 ACTATGGTAGCACAACAGAAATACC 58.887 40.000 0.00 0.00 34.54 2.73
3696 15205 2.906389 TGATTAGCACTGGGAGTTGAGT 59.094 45.455 0.00 0.00 0.00 3.41
3702 15211 3.119708 GCTTGTTTGATTAGCACTGGGAG 60.120 47.826 0.00 0.00 35.05 4.30
3716 15225 2.498892 GCAAGTCGCAGCTTGTTTG 58.501 52.632 15.68 0.00 45.47 2.93
3753 15262 4.142045 TGCTCCCTGATCAGCACT 57.858 55.556 17.76 0.00 40.80 4.40
3828 15337 2.640302 GCTGAGCTGGTCACGAGGA 61.640 63.158 5.28 0.00 0.00 3.71
3954 15463 2.670148 GGCCCACTCCACCTTCGAT 61.670 63.158 0.00 0.00 0.00 3.59
4074 15583 3.003275 CCTGCGAAGTTCTTTTTACAGCA 59.997 43.478 0.56 0.00 0.00 4.41
4191 15703 8.897752 GCAGAATCTACTGGAAATTACAGAATT 58.102 33.333 12.90 8.32 39.24 2.17
4192 15704 8.270744 AGCAGAATCTACTGGAAATTACAGAAT 58.729 33.333 12.90 0.00 39.24 2.40
4209 15721 3.562343 ATGTCATCTGCAGCAGAATCT 57.438 42.857 28.78 10.30 44.04 2.40
4253 15766 9.727859 TGTAGTTACTACAAATTTGCCATAGAA 57.272 29.630 21.26 2.87 42.94 2.10
4273 15786 9.131791 ACATCTCAAACCTTTTTACATGTAGTT 57.868 29.630 5.56 3.81 0.00 2.24
4288 15804 5.561532 CGCATGATCCATTACATCTCAAACC 60.562 44.000 0.00 0.00 0.00 3.27
4292 15808 4.060205 CACGCATGATCCATTACATCTCA 58.940 43.478 0.00 0.00 0.00 3.27
4293 15809 4.060900 ACACGCATGATCCATTACATCTC 58.939 43.478 0.00 0.00 0.00 2.75
4294 15810 4.077300 ACACGCATGATCCATTACATCT 57.923 40.909 0.00 0.00 0.00 2.90
4330 15846 0.998928 ATGGTGATGGGTTAGCCACA 59.001 50.000 4.87 3.44 36.17 4.17
4335 15851 5.476599 TGAAACTGAAATGGTGATGGGTTAG 59.523 40.000 0.00 0.00 0.00 2.34
4336 15852 5.389520 TGAAACTGAAATGGTGATGGGTTA 58.610 37.500 0.00 0.00 0.00 2.85
4341 15857 5.009911 TCAACCTGAAACTGAAATGGTGATG 59.990 40.000 0.00 0.00 0.00 3.07
4342 15858 5.010012 GTCAACCTGAAACTGAAATGGTGAT 59.990 40.000 0.00 0.00 0.00 3.06
4345 15863 4.536765 AGTCAACCTGAAACTGAAATGGT 58.463 39.130 0.00 0.00 0.00 3.55
4372 15894 5.830912 ACAGATGTGTGTACCATTTTTGTG 58.169 37.500 0.00 0.00 34.75 3.33
4389 15911 5.405269 TGTGATACACGTTCAGAAACAGATG 59.595 40.000 0.00 0.00 37.14 2.90
4449 15972 7.387948 GTCTAATGCTATGATCGGGTTTGTTAT 59.612 37.037 0.00 0.00 0.00 1.89
4457 15981 5.482006 TCATTGTCTAATGCTATGATCGGG 58.518 41.667 0.00 0.00 42.71 5.14
4580 16104 4.036262 CCTCTTGAGGATGTAGAGAAGTCG 59.964 50.000 11.02 0.00 38.09 4.18
4582 16106 4.017037 TCCCTCTTGAGGATGTAGAGAAGT 60.017 45.833 17.55 0.00 38.09 3.01
4599 16123 3.331889 AGTGATTTTGGTGTGATCCCTCT 59.668 43.478 0.00 0.00 0.00 3.69
4617 16141 3.938963 GTCAAGTTGGTTCTTGTGAGTGA 59.061 43.478 2.34 0.00 43.44 3.41
4725 16264 3.646162 TCAGCTAGAAGGGTTTCTGAACA 59.354 43.478 0.00 0.00 43.41 3.18
4760 16299 4.467107 GAGAGGCTCCGAGGGGGT 62.467 72.222 11.71 0.00 37.00 4.95
4789 16328 1.684734 GAACGACCTAGGCTGGGGA 60.685 63.158 21.86 0.00 0.00 4.81
4882 16421 0.966920 TTGACGAGGACTCAAGGGTC 59.033 55.000 0.00 0.00 35.66 4.46
4884 16423 2.770164 ATTTGACGAGGACTCAAGGG 57.230 50.000 0.00 0.00 0.00 3.95
4885 16424 4.065088 TGAAATTTGACGAGGACTCAAGG 58.935 43.478 0.00 0.00 0.00 3.61
4888 16427 4.336889 ACTGAAATTTGACGAGGACTCA 57.663 40.909 0.00 0.00 0.00 3.41
4900 16439 4.213270 TGCGTCGATCTTGAACTGAAATTT 59.787 37.500 0.00 0.00 0.00 1.82
4903 16442 2.475111 GTGCGTCGATCTTGAACTGAAA 59.525 45.455 0.00 0.00 0.00 2.69
4909 16448 0.108804 GAGGGTGCGTCGATCTTGAA 60.109 55.000 0.00 0.00 0.00 2.69
4912 16451 1.949847 CTGGAGGGTGCGTCGATCTT 61.950 60.000 0.00 0.00 0.00 2.40
4914 16453 2.105128 CTGGAGGGTGCGTCGATC 59.895 66.667 0.00 0.00 0.00 3.69
4915 16454 4.148825 GCTGGAGGGTGCGTCGAT 62.149 66.667 0.00 0.00 0.00 3.59
4999 16538 2.976589 TCATGCAAGATGTGTGACGAT 58.023 42.857 0.00 0.00 0.00 3.73
5035 16574 0.181114 AAGCCAGCAGTGTCTTCACA 59.819 50.000 1.36 0.00 46.01 3.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.