Multiple sequence alignment - TraesCS7A01G542500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G542500 chr7A 100.000 4261 0 0 1 4261 719362276 719366536 0.000000e+00 7869
1 TraesCS7A01G542500 chr7D 91.067 2306 149 27 1433 3718 622712691 622710423 0.000000e+00 3064
2 TraesCS7A01G542500 chr7D 84.986 1412 123 29 1 1385 622714255 622712906 0.000000e+00 1351
3 TraesCS7A01G542500 chr7D 88.845 251 26 2 3832 4080 622710425 622710175 1.490000e-79 307
4 TraesCS7A01G542500 chr7D 90.083 121 12 0 3717 3837 42918448 42918328 1.590000e-34 158
5 TraesCS7A01G542500 chr7B 89.406 2171 162 41 1282 3424 720978107 720980237 0.000000e+00 2673
6 TraesCS7A01G542500 chr7B 85.776 928 61 27 1 910 720976341 720977215 0.000000e+00 917
7 TraesCS7A01G542500 chr7B 89.928 278 23 3 906 1181 720977532 720977806 1.880000e-93 353
8 TraesCS7A01G542500 chr7B 89.630 270 17 5 3416 3675 720981081 720981349 2.460000e-87 333
9 TraesCS7A01G542500 chr5B 91.667 120 10 0 3717 3836 696223248 696223367 2.640000e-37 167
10 TraesCS7A01G542500 chr4D 91.667 120 10 0 3716 3835 367720769 367720888 2.640000e-37 167
11 TraesCS7A01G542500 chr3B 91.525 118 10 0 3717 3834 830443097 830442980 3.410000e-36 163
12 TraesCS7A01G542500 chr2A 89.147 129 14 0 3714 3842 606523807 606523679 1.230000e-35 161
13 TraesCS7A01G542500 chr5A 89.062 128 14 0 3715 3842 649239247 649239374 4.410000e-35 159
14 TraesCS7A01G542500 chr3D 90.756 119 11 0 3717 3835 445035133 445035251 4.410000e-35 159
15 TraesCS7A01G542500 chr1D 89.600 125 13 0 3711 3835 20995881 20996005 4.410000e-35 159
16 TraesCS7A01G542500 chr5D 88.976 127 14 0 3717 3843 492723171 492723297 1.590000e-34 158


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G542500 chr7A 719362276 719366536 4260 False 7869 7869 100.000000 1 4261 1 chr7A.!!$F1 4260
1 TraesCS7A01G542500 chr7D 622710175 622714255 4080 True 1574 3064 88.299333 1 4080 3 chr7D.!!$R2 4079
2 TraesCS7A01G542500 chr7B 720976341 720981349 5008 False 1069 2673 88.685000 1 3675 4 chr7B.!!$F1 3674

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
557 587 0.250295 CCTGCTTTCGGAGTGTTCCA 60.250 55.0 0.0 0.0 44.26 3.53 F
638 672 0.395173 AGAAAAACCCACTGGCACGT 60.395 50.0 0.0 0.0 33.59 4.49 F
1279 1858 0.601311 AAGCGTGAAGTGACCTCTGC 60.601 55.0 0.0 0.0 0.00 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1738 2503 0.387239 GGAAACACGCATGGCTCAAC 60.387 55.0 0.00 0.00 0.00 3.18 R
1825 2590 1.224069 GCTCGCTGTTGCTTGAGACA 61.224 55.0 0.00 0.00 36.97 3.41 R
3269 4046 1.018148 ACTAGCGTCTGATCTCCACG 58.982 55.0 7.14 7.14 36.60 4.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
109 112 0.390124 TGACACGTACTTGGGTCCAC 59.610 55.000 4.21 0.00 0.00 4.02
300 307 2.334838 GTGTCCACGTACCTGATCAAC 58.665 52.381 0.00 0.00 0.00 3.18
301 308 2.029290 GTGTCCACGTACCTGATCAACT 60.029 50.000 0.00 0.00 0.00 3.16
307 314 4.045104 CACGTACCTGATCAACTGATAGC 58.955 47.826 0.00 0.00 34.37 2.97
363 378 2.031682 GTGTGCACGCAAATCTCTTTCT 60.032 45.455 25.05 0.00 0.00 2.52
370 385 5.334105 GCACGCAAATCTCTTTCTAGAACAA 60.334 40.000 4.18 0.00 0.00 2.83
394 409 1.888512 ACAATCCACCTACACGTACGT 59.111 47.619 16.72 16.72 0.00 3.57
410 425 5.388655 CGTACGTACGTTGGCACATATGC 62.389 52.174 33.95 0.00 46.51 3.14
434 450 2.165437 GGTCCTTGCTTGTTTCACACAA 59.835 45.455 0.00 0.00 43.55 3.33
546 575 1.160329 ACGTGTGTGCTCCTGCTTTC 61.160 55.000 0.00 0.00 40.48 2.62
547 577 1.571460 GTGTGTGCTCCTGCTTTCG 59.429 57.895 0.00 0.00 40.48 3.46
557 587 0.250295 CCTGCTTTCGGAGTGTTCCA 60.250 55.000 0.00 0.00 44.26 3.53
566 600 3.659786 TCGGAGTGTTCCACTTTACATG 58.340 45.455 0.00 0.00 45.44 3.21
593 627 0.462375 ATGCCGTGTCGCCATAACTA 59.538 50.000 0.00 0.00 0.00 2.24
608 642 7.390996 TCGCCATAACTATTTTCCTTTTGTGTA 59.609 33.333 0.00 0.00 0.00 2.90
624 658 3.193263 TGTGTACGCGTTACCAAGAAAA 58.807 40.909 20.78 0.00 0.00 2.29
626 660 3.961860 GTGTACGCGTTACCAAGAAAAAC 59.038 43.478 20.78 5.08 0.00 2.43
629 663 1.334243 CGCGTTACCAAGAAAAACCCA 59.666 47.619 0.00 0.00 0.00 4.51
630 664 2.734670 GCGTTACCAAGAAAAACCCAC 58.265 47.619 0.00 0.00 0.00 4.61
632 666 3.794138 GCGTTACCAAGAAAAACCCACTG 60.794 47.826 0.00 0.00 0.00 3.66
634 668 1.119684 ACCAAGAAAAACCCACTGGC 58.880 50.000 0.00 0.00 33.59 4.85
635 669 1.118838 CCAAGAAAAACCCACTGGCA 58.881 50.000 0.00 0.00 33.59 4.92
636 670 1.202521 CCAAGAAAAACCCACTGGCAC 60.203 52.381 0.00 0.00 33.59 5.01
637 671 0.744281 AAGAAAAACCCACTGGCACG 59.256 50.000 0.00 0.00 33.59 5.34
638 672 0.395173 AGAAAAACCCACTGGCACGT 60.395 50.000 0.00 0.00 33.59 4.49
639 673 1.134037 AGAAAAACCCACTGGCACGTA 60.134 47.619 0.00 0.00 33.59 3.57
640 674 1.002142 GAAAAACCCACTGGCACGTAC 60.002 52.381 0.00 0.00 33.59 3.67
641 675 0.820482 AAAACCCACTGGCACGTACC 60.820 55.000 0.00 0.00 33.59 3.34
642 676 1.985460 AAACCCACTGGCACGTACCA 61.985 55.000 7.43 7.43 38.29 3.25
643 677 1.774894 AACCCACTGGCACGTACCAT 61.775 55.000 8.25 0.00 39.54 3.55
644 678 1.002624 CCCACTGGCACGTACCATT 60.003 57.895 8.25 0.00 39.54 3.16
645 679 0.608035 CCCACTGGCACGTACCATTT 60.608 55.000 8.25 0.00 39.54 2.32
646 680 1.339247 CCCACTGGCACGTACCATTTA 60.339 52.381 8.25 0.00 39.54 1.40
647 681 2.639065 CCACTGGCACGTACCATTTAT 58.361 47.619 8.25 0.00 39.54 1.40
648 682 2.354510 CCACTGGCACGTACCATTTATG 59.645 50.000 8.25 4.91 39.54 1.90
649 683 3.006940 CACTGGCACGTACCATTTATGT 58.993 45.455 8.25 0.00 39.54 2.29
650 684 3.063452 CACTGGCACGTACCATTTATGTC 59.937 47.826 8.25 0.00 39.54 3.06
651 685 3.055385 ACTGGCACGTACCATTTATGTCT 60.055 43.478 8.25 0.00 39.54 3.41
652 686 3.527533 TGGCACGTACCATTTATGTCTC 58.472 45.455 2.48 0.00 33.75 3.36
653 687 3.196901 TGGCACGTACCATTTATGTCTCT 59.803 43.478 2.48 0.00 33.75 3.10
654 688 4.189231 GGCACGTACCATTTATGTCTCTT 58.811 43.478 0.00 0.00 0.00 2.85
655 689 4.634443 GGCACGTACCATTTATGTCTCTTT 59.366 41.667 0.00 0.00 0.00 2.52
656 690 5.123344 GGCACGTACCATTTATGTCTCTTTT 59.877 40.000 0.00 0.00 0.00 2.27
657 691 6.349033 GGCACGTACCATTTATGTCTCTTTTT 60.349 38.462 0.00 0.00 0.00 1.94
684 718 4.503007 CGAAGGACGTACCATTTATGTCTG 59.497 45.833 0.00 0.00 42.04 3.51
693 727 5.779529 ACCATTTATGTCTGCATTCATCC 57.220 39.130 6.97 0.00 36.58 3.51
751 785 1.341209 CAAGATCACCATCCGATCCGA 59.659 52.381 0.00 0.00 40.17 4.55
768 802 5.063438 CGATCCGAGTTAACACATGACAATT 59.937 40.000 8.61 0.00 0.00 2.32
781 815 2.262211 TGACAATTGCAGACGATCGAG 58.738 47.619 24.34 12.11 0.00 4.04
782 816 1.002366 ACAATTGCAGACGATCGAGC 58.998 50.000 24.34 21.34 0.00 5.03
785 819 4.854784 TGCAGACGATCGAGCCGC 62.855 66.667 24.34 17.80 0.00 6.53
860 894 4.126437 CCATATACATTCGTTGCTCACCA 58.874 43.478 0.00 0.00 0.00 4.17
1043 1399 3.065371 CCTTCGTTGGCTAAATCCATGTC 59.935 47.826 0.00 0.00 35.77 3.06
1056 1412 1.409064 TCCATGTCTAGCATCGACACC 59.591 52.381 5.11 0.00 43.44 4.16
1080 1436 5.484715 CGTAAGTTCTAATTCCACCTCCAA 58.515 41.667 0.00 0.00 0.00 3.53
1084 1440 4.010349 GTTCTAATTCCACCTCCAACCAG 58.990 47.826 0.00 0.00 0.00 4.00
1087 1443 1.149101 ATTCCACCTCCAACCAGTGT 58.851 50.000 0.00 0.00 0.00 3.55
1094 1450 2.154462 CCTCCAACCAGTGTGACAATC 58.846 52.381 0.00 0.00 0.00 2.67
1118 1474 7.751732 TCGATTTTCATGATCACTAGTTTTGG 58.248 34.615 0.00 0.00 0.00 3.28
1134 1490 9.541143 ACTAGTTTTGGGTTTTGACAATAATTG 57.459 29.630 0.00 0.00 0.00 2.32
1169 1527 9.334693 GATGACATAGATTTGTTTTGTTCTGAC 57.665 33.333 0.00 0.00 0.00 3.51
1190 1768 2.627945 CATGCATGCATCAAGGCTTTT 58.372 42.857 30.07 3.48 33.90 2.27
1207 1785 3.840763 GCTTTTCGCTTGAAGTAATGTCG 59.159 43.478 0.00 0.00 35.14 4.35
1219 1797 6.153756 TGAAGTAATGTCGATTTCAACTCGA 58.846 36.000 0.00 0.00 42.44 4.04
1244 1823 8.862550 ATGACATTTGTTTTTGTTTCTCTCTC 57.137 30.769 0.00 0.00 0.00 3.20
1251 1830 6.338146 TGTTTTTGTTTCTCTCTCTCGAGAA 58.662 36.000 17.36 6.84 45.22 2.87
1259 1838 3.057876 TCTCTCTCTCGAGAAGTTGCAAC 60.058 47.826 22.17 22.17 45.22 4.17
1260 1839 2.623416 TCTCTCTCGAGAAGTTGCAACA 59.377 45.455 30.11 8.55 43.10 3.33
1279 1858 0.601311 AAGCGTGAAGTGACCTCTGC 60.601 55.000 0.00 0.00 0.00 4.26
1280 1859 1.300931 GCGTGAAGTGACCTCTGCA 60.301 57.895 0.00 0.00 0.00 4.41
1313 1892 4.336993 AGAAATAATGCCAAATTACCGCGA 59.663 37.500 8.23 0.00 0.00 5.87
1330 1910 4.933400 ACCGCGAGAACAAGTGTTAATTAT 59.067 37.500 8.23 0.00 38.56 1.28
1342 1922 8.023128 ACAAGTGTTAATTATGAAGCACATCAC 58.977 33.333 0.00 2.56 40.07 3.06
1343 1923 7.088589 AGTGTTAATTATGAAGCACATCACC 57.911 36.000 0.00 0.00 40.07 4.02
1352 1933 4.713553 TGAAGCACATCACCTTACTCAAA 58.286 39.130 0.00 0.00 0.00 2.69
1358 1939 6.770785 AGCACATCACCTTACTCAAAGTTTTA 59.229 34.615 0.00 0.00 32.89 1.52
1386 2138 8.691661 TTCCAGTTTTAGAAATATATCAGCCC 57.308 34.615 0.00 0.00 0.00 5.19
1392 2144 7.568128 TTTAGAAATATATCAGCCCTAGCCA 57.432 36.000 0.00 0.00 41.25 4.75
1395 2147 7.037342 AGAAATATATCAGCCCTAGCCAAAT 57.963 36.000 0.00 0.00 41.25 2.32
1400 2152 3.730215 TCAGCCCTAGCCAAATTTACA 57.270 42.857 0.00 0.00 41.25 2.41
1414 2166 7.807907 AGCCAAATTTACAGAATTTCAGTAACG 59.192 33.333 12.36 4.29 29.85 3.18
1424 2176 8.626526 ACAGAATTTCAGTAACGTAAATTTGGT 58.373 29.630 0.00 6.38 33.99 3.67
1425 2177 8.901748 CAGAATTTCAGTAACGTAAATTTGGTG 58.098 33.333 0.00 3.59 33.99 4.17
1426 2178 8.842280 AGAATTTCAGTAACGTAAATTTGGTGA 58.158 29.630 0.00 0.00 33.99 4.02
1427 2179 9.620660 GAATTTCAGTAACGTAAATTTGGTGAT 57.379 29.630 0.00 0.00 33.99 3.06
1428 2180 9.974980 AATTTCAGTAACGTAAATTTGGTGATT 57.025 25.926 0.00 0.00 30.62 2.57
1431 2183 8.385898 TCAGTAACGTAAATTTGGTGATTTCT 57.614 30.769 0.00 0.00 31.96 2.52
1436 2188 7.924103 ACGTAAATTTGGTGATTTCTGTTTC 57.076 32.000 0.00 0.00 31.96 2.78
1487 2239 7.623630 TCACATAAATTTGACTGAGATCCAGA 58.376 34.615 15.51 0.00 45.78 3.86
1488 2240 7.767659 TCACATAAATTTGACTGAGATCCAGAG 59.232 37.037 15.51 0.79 45.78 3.35
1498 2255 9.993454 TTGACTGAGATCCAGAGAAATATTATG 57.007 33.333 15.51 0.00 45.78 1.90
1521 2278 5.290643 TGAAATTTCAGCAACAAAAAGTCGG 59.709 36.000 16.91 0.00 32.50 4.79
1522 2279 3.859411 TTTCAGCAACAAAAAGTCGGT 57.141 38.095 0.00 0.00 0.00 4.69
1523 2280 4.966965 TTTCAGCAACAAAAAGTCGGTA 57.033 36.364 0.00 0.00 0.00 4.02
1524 2281 4.966965 TTCAGCAACAAAAAGTCGGTAA 57.033 36.364 0.00 0.00 0.00 2.85
1525 2282 4.281525 TCAGCAACAAAAAGTCGGTAAC 57.718 40.909 0.00 0.00 0.00 2.50
1531 2288 4.870221 ACAAAAAGTCGGTAACTGTGTC 57.130 40.909 0.00 0.00 38.58 3.67
1540 2297 2.476854 CGGTAACTGTGTCTACTACCGC 60.477 54.545 12.02 0.00 45.85 5.68
1548 2305 2.348666 GTGTCTACTACCGCAATTGCTG 59.651 50.000 26.86 22.88 39.32 4.41
1559 2316 3.552699 CCGCAATTGCTGAAATGTTATGG 59.447 43.478 26.86 12.70 39.32 2.74
1564 2321 4.439305 TTGCTGAAATGTTATGGCAGAC 57.561 40.909 0.00 0.00 0.00 3.51
1568 2325 2.290641 TGAAATGTTATGGCAGACCCGT 60.291 45.455 0.00 0.00 35.87 5.28
1569 2326 3.055021 TGAAATGTTATGGCAGACCCGTA 60.055 43.478 0.00 0.00 35.87 4.02
1576 2333 2.973694 TGGCAGACCCGTAGTTATTC 57.026 50.000 0.00 0.00 35.87 1.75
1587 2344 8.213679 AGACCCGTAGTTATTCTAGTATGTACA 58.786 37.037 0.00 0.00 0.00 2.90
1661 2426 9.290988 TGTAACCATGCTTACAAGAAGAAAATA 57.709 29.630 10.53 0.00 34.38 1.40
1738 2503 7.693969 AGAAATCAGACAGGGTTTGAAATAG 57.306 36.000 0.00 0.00 30.75 1.73
1798 2563 1.536418 TGCTGCCCACTACCACTCT 60.536 57.895 0.00 0.00 0.00 3.24
1810 2575 5.415701 CCACTACCACTCTAATTGCAAATGT 59.584 40.000 1.71 0.00 0.00 2.71
1825 2590 3.489738 GCAAATGTCAGTGCTTCACTTGT 60.490 43.478 4.42 0.00 42.59 3.16
1859 2624 1.926561 CGAGCAAGCTGTATAGTGCA 58.073 50.000 8.43 0.00 39.50 4.57
1891 2656 0.539438 AAGGCCATTTCTTGACGCCA 60.539 50.000 5.01 0.00 42.28 5.69
1904 2669 4.394920 TCTTGACGCCATGTATTTTCCTTC 59.605 41.667 0.00 0.00 0.00 3.46
1943 2708 7.433708 TTGAAGAGAATTATTTCTTGACGCA 57.566 32.000 1.60 0.00 42.34 5.24
1961 2735 2.096980 CGCATTGCCATATATGCTCAGG 59.903 50.000 7.24 5.31 43.79 3.86
2051 2825 4.104417 AGCAGCTCGTCGTCGTCC 62.104 66.667 1.33 0.00 38.33 4.79
2054 2828 2.433145 AGCTCGTCGTCGTCCGTA 60.433 61.111 1.33 0.00 37.94 4.02
2059 2833 0.943835 TCGTCGTCGTCCGTAACTCA 60.944 55.000 1.33 0.00 37.94 3.41
2189 2966 2.765699 GACATTCAAGCTCTCCTCCTCT 59.234 50.000 0.00 0.00 0.00 3.69
2512 3289 2.432628 GCTGGACGTCGAAGGTGG 60.433 66.667 9.92 0.00 0.00 4.61
2537 3314 2.610479 CGATGACAACACTACCACTGCT 60.610 50.000 0.00 0.00 0.00 4.24
2579 3356 2.112297 GTCCGCCAAGACAACCCA 59.888 61.111 0.00 0.00 36.73 4.51
2588 3365 1.122019 AAGACAACCCACTCTCGCCT 61.122 55.000 0.00 0.00 0.00 5.52
2879 3656 1.289066 CGTCAAGAAGCTGTCCGGA 59.711 57.895 0.00 0.00 0.00 5.14
3260 4037 2.320805 CGACGACGTCCAAAGACTAA 57.679 50.000 21.63 0.00 41.16 2.24
3264 4041 3.582780 ACGACGTCCAAAGACTAATTCC 58.417 45.455 10.58 0.00 41.16 3.01
3269 4046 6.555812 ACGTCCAAAGACTAATTCCTTTTC 57.444 37.500 0.00 0.00 41.16 2.29
3277 4055 6.301169 AGACTAATTCCTTTTCGTGGAGAT 57.699 37.500 0.00 0.00 34.76 2.75
3278 4056 6.342111 AGACTAATTCCTTTTCGTGGAGATC 58.658 40.000 0.00 0.00 34.76 2.75
3298 4078 1.070577 CAGACGCTAGTGTGTTGTTGC 60.071 52.381 14.97 0.00 36.94 4.17
3366 4150 4.452455 GGGATAGTGGCATGACGAATAAAG 59.548 45.833 0.00 0.00 0.00 1.85
3367 4151 5.297547 GGATAGTGGCATGACGAATAAAGA 58.702 41.667 0.00 0.00 0.00 2.52
3368 4152 5.406780 GGATAGTGGCATGACGAATAAAGAG 59.593 44.000 0.00 0.00 0.00 2.85
3369 4153 4.207891 AGTGGCATGACGAATAAAGAGT 57.792 40.909 0.00 0.00 0.00 3.24
3420 4204 5.574970 AGCTTTTTCCTGGATAGGGATAG 57.425 43.478 0.00 0.00 44.70 2.08
3425 5061 5.640127 TTTCCTGGATAGGGATAGGAGAT 57.360 43.478 0.00 0.00 44.70 2.75
3472 5108 2.617021 GGGCATTCCTCCGAAAGTGTTA 60.617 50.000 0.00 0.00 0.00 2.41
3483 5119 7.123697 TCCTCCGAAAGTGTTAATCTAATCTCA 59.876 37.037 0.00 0.00 0.00 3.27
3488 5124 7.900352 CGAAAGTGTTAATCTAATCTCAAGCAC 59.100 37.037 0.00 0.00 0.00 4.40
3489 5125 8.621532 AAAGTGTTAATCTAATCTCAAGCACA 57.378 30.769 0.00 0.00 0.00 4.57
3589 5234 8.990163 TCTAACTTTCTGTAAAATTTCACCCT 57.010 30.769 0.00 0.00 0.00 4.34
3599 5244 7.004086 TGTAAAATTTCACCCTGAGAAGACAT 58.996 34.615 0.00 0.00 0.00 3.06
3605 5250 2.100989 ACCCTGAGAAGACATCGGTAC 58.899 52.381 0.00 0.00 0.00 3.34
3676 5321 8.964420 TTTTAGCTCCGAGATTTGTATTTTTG 57.036 30.769 0.00 0.00 0.00 2.44
3677 5322 7.681939 TTAGCTCCGAGATTTGTATTTTTGT 57.318 32.000 0.00 0.00 0.00 2.83
3678 5323 8.780846 TTAGCTCCGAGATTTGTATTTTTGTA 57.219 30.769 0.00 0.00 0.00 2.41
3679 5324 7.073342 AGCTCCGAGATTTGTATTTTTGTAC 57.927 36.000 0.00 0.00 0.00 2.90
3690 5336 3.915437 ATTTTTGTACAAGCCTCCACG 57.085 42.857 8.56 0.00 0.00 4.94
3691 5337 1.600023 TTTTGTACAAGCCTCCACGG 58.400 50.000 8.56 0.00 0.00 4.94
3722 5368 9.256477 CTTTCCAAAGTTAAATTTTGTACTCCC 57.744 33.333 0.00 0.00 34.51 4.30
3723 5369 8.541899 TTCCAAAGTTAAATTTTGTACTCCCT 57.458 30.769 0.00 0.00 34.51 4.20
3724 5370 8.541899 TCCAAAGTTAAATTTTGTACTCCCTT 57.458 30.769 0.00 0.00 34.51 3.95
3725 5371 8.635328 TCCAAAGTTAAATTTTGTACTCCCTTC 58.365 33.333 0.00 0.00 34.51 3.46
3726 5372 8.417884 CCAAAGTTAAATTTTGTACTCCCTTCA 58.582 33.333 0.00 0.00 34.51 3.02
3727 5373 9.981114 CAAAGTTAAATTTTGTACTCCCTTCAT 57.019 29.630 0.00 0.00 32.30 2.57
3729 5375 8.349568 AGTTAAATTTTGTACTCCCTTCATCC 57.650 34.615 0.00 0.00 0.00 3.51
3730 5376 7.947890 AGTTAAATTTTGTACTCCCTTCATCCA 59.052 33.333 0.00 0.00 0.00 3.41
3731 5377 8.581578 GTTAAATTTTGTACTCCCTTCATCCAA 58.418 33.333 0.00 0.00 0.00 3.53
3732 5378 7.610580 AAATTTTGTACTCCCTTCATCCAAA 57.389 32.000 0.00 0.00 0.00 3.28
3733 5379 7.610580 AATTTTGTACTCCCTTCATCCAAAA 57.389 32.000 0.00 0.00 35.54 2.44
3734 5380 7.610580 ATTTTGTACTCCCTTCATCCAAAAA 57.389 32.000 0.00 0.00 34.97 1.94
3753 5399 5.948742 AAAAAGTTTGTCCCTCAAATGGA 57.051 34.783 0.00 0.00 45.88 3.41
3754 5400 6.499106 AAAAAGTTTGTCCCTCAAATGGAT 57.501 33.333 0.00 0.00 45.88 3.41
3755 5401 5.473066 AAAGTTTGTCCCTCAAATGGATG 57.527 39.130 0.00 0.00 45.88 3.51
3756 5402 4.118168 AGTTTGTCCCTCAAATGGATGT 57.882 40.909 0.00 0.00 45.88 3.06
3757 5403 5.255397 AGTTTGTCCCTCAAATGGATGTA 57.745 39.130 0.00 0.00 45.88 2.29
3758 5404 5.831103 AGTTTGTCCCTCAAATGGATGTAT 58.169 37.500 0.00 0.00 45.88 2.29
3759 5405 5.888161 AGTTTGTCCCTCAAATGGATGTATC 59.112 40.000 0.00 0.00 45.88 2.24
3760 5406 5.715439 TTGTCCCTCAAATGGATGTATCT 57.285 39.130 0.00 0.00 33.65 1.98
3761 5407 6.823286 TTGTCCCTCAAATGGATGTATCTA 57.177 37.500 0.00 0.00 33.65 1.98
3762 5408 6.425210 TGTCCCTCAAATGGATGTATCTAG 57.575 41.667 0.00 0.00 33.65 2.43
3763 5409 5.221722 TGTCCCTCAAATGGATGTATCTAGC 60.222 44.000 0.00 0.00 33.65 3.42
3764 5410 4.907269 TCCCTCAAATGGATGTATCTAGCA 59.093 41.667 0.00 0.00 0.00 3.49
3765 5411 4.999950 CCCTCAAATGGATGTATCTAGCAC 59.000 45.833 0.00 0.00 0.00 4.40
3766 5412 5.221803 CCCTCAAATGGATGTATCTAGCACT 60.222 44.000 0.00 0.00 0.00 4.40
3767 5413 6.014242 CCCTCAAATGGATGTATCTAGCACTA 60.014 42.308 0.00 0.00 0.00 2.74
3768 5414 7.445121 CCTCAAATGGATGTATCTAGCACTAA 58.555 38.462 0.00 0.00 0.00 2.24
3769 5415 7.601886 CCTCAAATGGATGTATCTAGCACTAAG 59.398 40.741 0.00 0.00 0.00 2.18
3770 5416 8.023021 TCAAATGGATGTATCTAGCACTAAGT 57.977 34.615 0.00 0.00 0.00 2.24
3771 5417 8.486210 TCAAATGGATGTATCTAGCACTAAGTT 58.514 33.333 0.00 0.00 0.00 2.66
3772 5418 9.764363 CAAATGGATGTATCTAGCACTAAGTTA 57.236 33.333 0.00 0.00 0.00 2.24
3773 5419 9.988815 AAATGGATGTATCTAGCACTAAGTTAG 57.011 33.333 8.41 8.41 32.79 2.34
3774 5420 8.713708 ATGGATGTATCTAGCACTAAGTTAGT 57.286 34.615 9.85 9.85 40.28 2.24
3789 5435 8.713708 ACTAAGTTAGTGCTAGATACATCCAT 57.286 34.615 14.82 0.00 37.69 3.41
3790 5436 9.148879 ACTAAGTTAGTGCTAGATACATCCATT 57.851 33.333 14.82 0.00 37.69 3.16
3791 5437 9.988815 CTAAGTTAGTGCTAGATACATCCATTT 57.011 33.333 1.40 0.00 0.00 2.32
3794 5440 9.988815 AGTTAGTGCTAGATACATCCATTTAAG 57.011 33.333 0.00 0.00 0.00 1.85
3795 5441 9.209175 GTTAGTGCTAGATACATCCATTTAAGG 57.791 37.037 0.00 0.00 0.00 2.69
3796 5442 6.773638 AGTGCTAGATACATCCATTTAAGGG 58.226 40.000 0.00 0.00 0.00 3.95
3797 5443 6.558775 AGTGCTAGATACATCCATTTAAGGGA 59.441 38.462 0.00 0.00 39.14 4.20
3798 5444 6.651225 GTGCTAGATACATCCATTTAAGGGAC 59.349 42.308 0.00 0.00 37.23 4.46
3799 5445 6.328934 TGCTAGATACATCCATTTAAGGGACA 59.671 38.462 0.00 0.00 37.23 4.02
3800 5446 7.147391 TGCTAGATACATCCATTTAAGGGACAA 60.147 37.037 0.00 0.00 37.23 3.18
3801 5447 7.389053 GCTAGATACATCCATTTAAGGGACAAG 59.611 40.741 0.00 0.00 37.23 3.16
3802 5448 7.213178 AGATACATCCATTTAAGGGACAAGT 57.787 36.000 0.00 3.19 37.23 3.16
3803 5449 7.643123 AGATACATCCATTTAAGGGACAAGTT 58.357 34.615 0.00 0.00 37.23 2.66
3804 5450 8.116026 AGATACATCCATTTAAGGGACAAGTTT 58.884 33.333 0.00 0.00 37.23 2.66
3805 5451 6.345096 ACATCCATTTAAGGGACAAGTTTG 57.655 37.500 0.00 0.00 37.23 2.93
3806 5452 5.245977 ACATCCATTTAAGGGACAAGTTTGG 59.754 40.000 0.00 0.00 37.23 3.28
3807 5453 4.156477 TCCATTTAAGGGACAAGTTTGGG 58.844 43.478 0.00 0.00 0.00 4.12
3808 5454 4.140900 TCCATTTAAGGGACAAGTTTGGGA 60.141 41.667 0.00 0.00 0.00 4.37
3809 5455 4.021456 CCATTTAAGGGACAAGTTTGGGAC 60.021 45.833 0.00 0.00 0.00 4.46
3810 5456 3.955524 TTAAGGGACAAGTTTGGGACA 57.044 42.857 0.00 0.00 0.00 4.02
3831 5477 3.739167 TTTTTCGCACGGTGGGAG 58.261 55.556 24.09 0.00 40.47 4.30
3832 5478 1.153127 TTTTTCGCACGGTGGGAGT 60.153 52.632 24.09 0.00 40.47 3.85
3833 5479 0.106335 TTTTTCGCACGGTGGGAGTA 59.894 50.000 24.09 15.43 40.47 2.59
3844 5490 2.361438 CGGTGGGAGTAGGATGTTAGAC 59.639 54.545 0.00 0.00 0.00 2.59
3847 5494 4.099727 GGTGGGAGTAGGATGTTAGACTTC 59.900 50.000 0.00 0.00 0.00 3.01
3857 5504 6.402222 AGGATGTTAGACTTCTGTTGATGTC 58.598 40.000 0.00 0.00 43.52 3.06
3861 5508 3.032017 AGACTTCTGTTGATGTCCGTG 57.968 47.619 7.97 0.00 43.95 4.94
3862 5509 1.461127 GACTTCTGTTGATGTCCGTGC 59.539 52.381 0.00 0.00 39.82 5.34
3863 5510 0.798776 CTTCTGTTGATGTCCGTGCC 59.201 55.000 0.00 0.00 0.00 5.01
3936 5584 2.074547 GCATGTGCATTTGTGCTCTT 57.925 45.000 0.00 0.00 41.59 2.85
3945 5593 6.598850 TGTGCATTTGTGCTCTTGATTAGATA 59.401 34.615 0.00 0.00 35.49 1.98
3956 5604 7.147672 TGCTCTTGATTAGATACTCAATGTCCA 60.148 37.037 0.00 0.00 31.39 4.02
3998 5646 1.235724 GGTCCTAATATTGCCGTGCC 58.764 55.000 0.00 0.00 0.00 5.01
4001 5649 1.071699 TCCTAATATTGCCGTGCCCTC 59.928 52.381 0.00 0.00 0.00 4.30
4012 5660 1.303643 GTGCCCTCTGTTCTTGGGG 60.304 63.158 0.00 0.00 41.19 4.96
4021 5669 5.076873 CCTCTGTTCTTGGGGAAAATACAA 58.923 41.667 0.00 0.00 35.51 2.41
4025 5673 7.666623 TCTGTTCTTGGGGAAAATACAATTTC 58.333 34.615 0.00 0.00 38.34 2.17
4073 5721 5.473066 AGTGTTTGGAAGAATGGATTTGG 57.527 39.130 0.00 0.00 0.00 3.28
4080 5728 8.314021 GTTTGGAAGAATGGATTTGGTAATTCT 58.686 33.333 0.00 0.00 40.27 2.40
4081 5729 7.645058 TGGAAGAATGGATTTGGTAATTCTC 57.355 36.000 0.00 0.00 38.18 2.87
4082 5730 7.413446 TGGAAGAATGGATTTGGTAATTCTCT 58.587 34.615 0.00 0.00 38.18 3.10
4083 5731 7.895429 TGGAAGAATGGATTTGGTAATTCTCTT 59.105 33.333 0.00 0.00 38.18 2.85
4084 5732 8.753133 GGAAGAATGGATTTGGTAATTCTCTTT 58.247 33.333 0.00 0.00 38.18 2.52
4085 5733 9.794685 GAAGAATGGATTTGGTAATTCTCTTTC 57.205 33.333 0.00 0.00 38.18 2.62
4086 5734 7.989826 AGAATGGATTTGGTAATTCTCTTTCG 58.010 34.615 0.00 0.00 35.01 3.46
4087 5735 7.829211 AGAATGGATTTGGTAATTCTCTTTCGA 59.171 33.333 0.00 0.00 35.01 3.71
4088 5736 8.525290 AATGGATTTGGTAATTCTCTTTCGAT 57.475 30.769 0.00 0.00 0.00 3.59
4089 5737 7.320443 TGGATTTGGTAATTCTCTTTCGATG 57.680 36.000 0.00 0.00 0.00 3.84
4090 5738 7.109501 TGGATTTGGTAATTCTCTTTCGATGA 58.890 34.615 0.00 0.00 0.00 2.92
4091 5739 7.775093 TGGATTTGGTAATTCTCTTTCGATGAT 59.225 33.333 0.00 0.00 0.00 2.45
4092 5740 8.072567 GGATTTGGTAATTCTCTTTCGATGATG 58.927 37.037 0.00 0.00 0.00 3.07
4093 5741 7.921786 TTTGGTAATTCTCTTTCGATGATGT 57.078 32.000 0.00 0.00 0.00 3.06
4094 5742 7.921786 TTGGTAATTCTCTTTCGATGATGTT 57.078 32.000 0.00 0.00 0.00 2.71
4095 5743 7.539712 TGGTAATTCTCTTTCGATGATGTTC 57.460 36.000 0.00 0.00 0.00 3.18
4096 5744 6.255670 TGGTAATTCTCTTTCGATGATGTTCG 59.744 38.462 0.00 0.00 40.46 3.95
4097 5745 5.725110 AATTCTCTTTCGATGATGTTCGG 57.275 39.130 0.00 0.00 39.56 4.30
4098 5746 3.165058 TCTCTTTCGATGATGTTCGGG 57.835 47.619 0.00 0.00 39.56 5.14
4099 5747 1.594862 CTCTTTCGATGATGTTCGGGC 59.405 52.381 0.00 0.00 39.56 6.13
4100 5748 0.301687 CTTTCGATGATGTTCGGGCG 59.698 55.000 0.00 0.00 39.56 6.13
4101 5749 1.701545 TTTCGATGATGTTCGGGCGC 61.702 55.000 0.00 0.00 39.56 6.53
4102 5750 2.844072 TTCGATGATGTTCGGGCGCA 62.844 55.000 10.83 0.00 39.56 6.09
4103 5751 2.709475 GATGATGTTCGGGCGCAC 59.291 61.111 10.83 3.71 0.00 5.34
4104 5752 1.815421 GATGATGTTCGGGCGCACT 60.815 57.895 8.62 0.00 0.00 4.40
4105 5753 1.766143 GATGATGTTCGGGCGCACTC 61.766 60.000 8.62 0.00 0.00 3.51
4106 5754 3.554692 GATGTTCGGGCGCACTCG 61.555 66.667 8.62 9.53 39.07 4.18
4107 5755 3.982372 GATGTTCGGGCGCACTCGA 62.982 63.158 8.62 12.00 38.10 4.04
4108 5756 3.371097 ATGTTCGGGCGCACTCGAT 62.371 57.895 8.62 0.00 38.10 3.59
4109 5757 3.255379 GTTCGGGCGCACTCGATC 61.255 66.667 8.62 9.93 38.10 3.69
4110 5758 3.449227 TTCGGGCGCACTCGATCT 61.449 61.111 8.62 0.00 38.10 2.75
4111 5759 2.116533 TTCGGGCGCACTCGATCTA 61.117 57.895 8.62 0.00 38.10 1.98
4112 5760 1.659622 TTCGGGCGCACTCGATCTAA 61.660 55.000 8.62 0.00 38.10 2.10
4113 5761 1.226859 CGGGCGCACTCGATCTAAA 60.227 57.895 8.62 0.00 38.10 1.85
4114 5762 0.597637 CGGGCGCACTCGATCTAAAT 60.598 55.000 8.62 0.00 38.10 1.40
4115 5763 1.583054 GGGCGCACTCGATCTAAATT 58.417 50.000 10.83 0.00 38.10 1.82
4116 5764 2.750948 GGGCGCACTCGATCTAAATTA 58.249 47.619 10.83 0.00 38.10 1.40
4117 5765 3.326747 GGGCGCACTCGATCTAAATTAT 58.673 45.455 10.83 0.00 38.10 1.28
4118 5766 4.491676 GGGCGCACTCGATCTAAATTATA 58.508 43.478 10.83 0.00 38.10 0.98
4119 5767 4.927425 GGGCGCACTCGATCTAAATTATAA 59.073 41.667 10.83 0.00 38.10 0.98
4120 5768 5.062308 GGGCGCACTCGATCTAAATTATAAG 59.938 44.000 10.83 0.00 38.10 1.73
4121 5769 5.862323 GGCGCACTCGATCTAAATTATAAGA 59.138 40.000 10.83 0.00 38.10 2.10
4122 5770 6.531948 GGCGCACTCGATCTAAATTATAAGAT 59.468 38.462 10.83 0.00 38.10 2.40
4123 5771 7.063544 GGCGCACTCGATCTAAATTATAAGATT 59.936 37.037 10.83 0.00 38.10 2.40
4124 5772 8.105135 GCGCACTCGATCTAAATTATAAGATTC 58.895 37.037 0.30 0.00 38.10 2.52
4125 5773 9.347934 CGCACTCGATCTAAATTATAAGATTCT 57.652 33.333 0.00 0.00 38.10 2.40
4137 5785 8.974060 AATTATAAGATTCTTCTTAACCCGCA 57.026 30.769 1.27 0.00 45.24 5.69
4138 5786 7.781548 TTATAAGATTCTTCTTAACCCGCAC 57.218 36.000 1.27 0.00 45.24 5.34
4139 5787 3.695830 AGATTCTTCTTAACCCGCACA 57.304 42.857 0.00 0.00 0.00 4.57
4140 5788 3.335579 AGATTCTTCTTAACCCGCACAC 58.664 45.455 0.00 0.00 0.00 3.82
4141 5789 1.504359 TTCTTCTTAACCCGCACACG 58.496 50.000 0.00 0.00 39.67 4.49
4142 5790 0.390124 TCTTCTTAACCCGCACACGT 59.610 50.000 0.00 0.00 37.70 4.49
4143 5791 0.511221 CTTCTTAACCCGCACACGTG 59.489 55.000 15.48 15.48 37.70 4.49
4212 5860 9.504708 TCTTTTATTTTGTACATTAGAACCCGA 57.495 29.630 0.00 0.00 0.00 5.14
4235 5883 7.347448 CGATTAATCGCACATAATGATATGGG 58.653 38.462 23.67 0.00 44.37 4.00
4236 5884 7.518848 CGATTAATCGCACATAATGATATGGGG 60.519 40.741 23.67 0.00 42.24 4.96
4237 5885 4.574674 ATCGCACATAATGATATGGGGT 57.425 40.909 0.72 0.00 42.24 4.95
4238 5886 5.692115 ATCGCACATAATGATATGGGGTA 57.308 39.130 0.72 0.00 42.24 3.69
4239 5887 5.491323 TCGCACATAATGATATGGGGTAA 57.509 39.130 0.72 0.00 42.24 2.85
4240 5888 6.061022 TCGCACATAATGATATGGGGTAAT 57.939 37.500 0.72 0.00 42.24 1.89
4241 5889 5.879777 TCGCACATAATGATATGGGGTAATG 59.120 40.000 0.72 0.00 42.24 1.90
4242 5890 5.647658 CGCACATAATGATATGGGGTAATGT 59.352 40.000 0.72 0.00 42.24 2.71
4243 5891 6.150976 CGCACATAATGATATGGGGTAATGTT 59.849 38.462 0.72 0.00 42.24 2.71
4244 5892 7.538575 GCACATAATGATATGGGGTAATGTTC 58.461 38.462 0.72 0.00 42.24 3.18
4245 5893 7.394359 GCACATAATGATATGGGGTAATGTTCT 59.606 37.037 0.72 0.00 42.24 3.01
4246 5894 9.300681 CACATAATGATATGGGGTAATGTTCTT 57.699 33.333 1.38 0.00 42.71 2.52
4247 5895 9.881773 ACATAATGATATGGGGTAATGTTCTTT 57.118 29.630 1.38 0.00 42.71 2.52
4251 5899 7.328277 TGATATGGGGTAATGTTCTTTTTCG 57.672 36.000 0.00 0.00 0.00 3.46
4252 5900 3.926821 TGGGGTAATGTTCTTTTTCGC 57.073 42.857 0.00 0.00 0.00 4.70
4253 5901 3.223435 TGGGGTAATGTTCTTTTTCGCA 58.777 40.909 0.00 0.00 0.00 5.10
4254 5902 3.829601 TGGGGTAATGTTCTTTTTCGCAT 59.170 39.130 0.00 0.00 0.00 4.73
4255 5903 4.282195 TGGGGTAATGTTCTTTTTCGCATT 59.718 37.500 0.00 0.00 35.90 3.56
4256 5904 5.477291 TGGGGTAATGTTCTTTTTCGCATTA 59.523 36.000 0.00 0.00 34.05 1.90
4257 5905 6.033966 GGGGTAATGTTCTTTTTCGCATTAG 58.966 40.000 0.00 0.00 35.36 1.73
4258 5906 6.349860 GGGGTAATGTTCTTTTTCGCATTAGT 60.350 38.462 0.00 0.00 35.36 2.24
4259 5907 7.088272 GGGTAATGTTCTTTTTCGCATTAGTT 58.912 34.615 0.00 0.00 35.36 2.24
4260 5908 7.597369 GGGTAATGTTCTTTTTCGCATTAGTTT 59.403 33.333 0.00 0.00 35.36 2.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 2.238847 TAATCGAGCACCGCAAGCCT 62.239 55.000 0.00 0.00 38.37 4.58
13 14 1.813753 TAATCGAGCACCGCAAGCC 60.814 57.895 0.00 0.00 38.37 4.35
75 78 3.311110 TCACAGGGTCGTCTGCCC 61.311 66.667 0.00 0.00 46.43 5.36
86 89 0.391597 ACCCAAGTACGTGTCACAGG 59.608 55.000 8.02 0.00 0.00 4.00
154 161 1.003331 CGTTTTTGGTCGTGCTTGCTA 60.003 47.619 0.00 0.00 0.00 3.49
280 287 2.029290 AGTTGATCAGGTACGTGGACAC 60.029 50.000 15.15 7.60 0.00 3.67
300 307 3.379240 CAAGGTGTCGATGAGCTATCAG 58.621 50.000 0.00 0.00 39.29 2.90
301 308 2.101415 CCAAGGTGTCGATGAGCTATCA 59.899 50.000 0.00 0.00 40.50 2.15
307 314 1.811266 CGGCCAAGGTGTCGATGAG 60.811 63.158 2.24 0.00 0.00 2.90
363 378 2.635915 AGGTGGATTGTCGGTTGTTCTA 59.364 45.455 0.00 0.00 0.00 2.10
370 385 0.245539 CGTGTAGGTGGATTGTCGGT 59.754 55.000 0.00 0.00 0.00 4.69
410 425 1.264288 GTGAAACAAGCAAGGACCGAG 59.736 52.381 0.00 0.00 36.32 4.63
411 426 1.305201 GTGAAACAAGCAAGGACCGA 58.695 50.000 0.00 0.00 36.32 4.69
412 427 3.845625 GTGAAACAAGCAAGGACCG 57.154 52.632 0.00 0.00 36.32 4.79
434 450 1.628846 AGCACAGTTCCCGTAATTCCT 59.371 47.619 0.00 0.00 0.00 3.36
443 459 1.137282 GGAGTAGCTAGCACAGTTCCC 59.863 57.143 18.83 4.71 0.00 3.97
587 621 7.095102 ACGCGTACACAAAAGGAAAATAGTTAT 60.095 33.333 11.67 0.00 0.00 1.89
593 627 3.974871 ACGCGTACACAAAAGGAAAAT 57.025 38.095 11.67 0.00 0.00 1.82
608 642 1.334556 GGGTTTTTCTTGGTAACGCGT 59.665 47.619 5.58 5.58 42.51 6.01
624 658 1.774894 ATGGTACGTGCCAGTGGGTT 61.775 55.000 29.17 9.93 42.47 4.11
626 660 0.608035 AAATGGTACGTGCCAGTGGG 60.608 55.000 29.17 0.00 42.47 4.61
629 663 3.055385 AGACATAAATGGTACGTGCCAGT 60.055 43.478 29.17 24.95 42.47 4.00
630 664 3.531538 AGACATAAATGGTACGTGCCAG 58.468 45.455 29.17 17.88 42.47 4.85
632 666 3.793559 AGAGACATAAATGGTACGTGCC 58.206 45.455 16.68 16.68 0.00 5.01
655 689 1.950828 TGGTACGTCCTTCGCAAAAA 58.049 45.000 0.00 0.00 44.19 1.94
656 690 2.172851 ATGGTACGTCCTTCGCAAAA 57.827 45.000 0.00 0.00 44.19 2.44
657 691 2.172851 AATGGTACGTCCTTCGCAAA 57.827 45.000 0.00 0.00 44.19 3.68
658 692 2.172851 AAATGGTACGTCCTTCGCAA 57.827 45.000 0.00 0.00 44.19 4.85
659 693 3.191669 CATAAATGGTACGTCCTTCGCA 58.808 45.455 0.00 0.00 44.19 5.10
660 694 3.192466 ACATAAATGGTACGTCCTTCGC 58.808 45.455 0.00 0.00 44.19 4.70
661 695 4.503007 CAGACATAAATGGTACGTCCTTCG 59.497 45.833 0.00 0.00 46.00 3.79
662 696 4.270325 GCAGACATAAATGGTACGTCCTTC 59.730 45.833 0.00 0.00 37.07 3.46
663 697 4.189231 GCAGACATAAATGGTACGTCCTT 58.811 43.478 0.00 0.00 37.07 3.36
664 698 3.196901 TGCAGACATAAATGGTACGTCCT 59.803 43.478 0.00 0.00 37.07 3.85
665 699 3.527533 TGCAGACATAAATGGTACGTCC 58.472 45.455 0.00 0.00 0.00 4.79
666 700 5.293324 TGAATGCAGACATAAATGGTACGTC 59.707 40.000 0.00 0.00 34.62 4.34
684 718 2.692041 AGCTAGCCAAAAGGATGAATGC 59.308 45.455 12.13 0.00 0.00 3.56
738 772 2.104967 TGTTAACTCGGATCGGATGGT 58.895 47.619 7.22 0.00 0.00 3.55
751 785 5.560760 CGTCTGCAATTGTCATGTGTTAACT 60.561 40.000 7.40 0.00 0.00 2.24
768 802 4.854784 GCGGCTCGATCGTCTGCA 62.855 66.667 26.69 6.24 32.64 4.41
781 815 3.510360 ACATATATATAGGGATCGGCGGC 59.490 47.826 7.21 0.00 0.00 6.53
782 816 4.765339 TCACATATATATAGGGATCGGCGG 59.235 45.833 7.21 0.00 0.00 6.13
785 819 6.661377 CCCTCTCACATATATATAGGGATCGG 59.339 46.154 17.71 10.87 44.18 4.18
841 875 3.792401 CCTGGTGAGCAACGAATGTATA 58.208 45.455 0.00 0.00 0.00 1.47
860 894 2.689983 CACTTGGAGTTTGACAAAGCCT 59.310 45.455 16.54 6.15 0.00 4.58
1043 1399 1.404391 ACTTACGGGTGTCGATGCTAG 59.596 52.381 0.00 0.00 42.43 3.42
1056 1412 4.081309 TGGAGGTGGAATTAGAACTTACGG 60.081 45.833 0.00 0.00 0.00 4.02
1080 1436 4.133820 TGAAAATCGATTGTCACACTGGT 58.866 39.130 24.16 0.00 29.36 4.00
1084 1440 6.467047 GTGATCATGAAAATCGATTGTCACAC 59.533 38.462 28.93 25.66 36.88 3.82
1087 1443 6.990341 AGTGATCATGAAAATCGATTGTCA 57.010 33.333 28.60 28.60 38.31 3.58
1094 1450 6.968904 CCCAAAACTAGTGATCATGAAAATCG 59.031 38.462 0.00 0.00 0.00 3.34
1118 1474 9.162764 TCTCTAGCTACAATTATTGTCAAAACC 57.837 33.333 14.29 0.00 44.12 3.27
1134 1490 9.757227 AAACAAATCTATGTCATCTCTAGCTAC 57.243 33.333 0.00 0.00 31.81 3.58
1147 1505 7.581213 TGGTCAGAACAAAACAAATCTATGT 57.419 32.000 0.00 0.00 34.24 2.29
1169 1527 0.464036 AAGCCTTGATGCATGCATGG 59.536 50.000 36.73 29.72 36.70 3.66
1190 1768 4.926832 TGAAATCGACATTACTTCAAGCGA 59.073 37.500 0.00 0.00 0.00 4.93
1207 1785 7.858052 AAACAAATGTCATCGAGTTGAAATC 57.142 32.000 2.66 0.00 0.00 2.17
1219 1797 8.689972 AGAGAGAGAAACAAAAACAAATGTCAT 58.310 29.630 0.00 0.00 0.00 3.06
1244 1823 1.397693 CGCTTGTTGCAACTTCTCGAG 60.398 52.381 28.61 16.74 43.06 4.04
1251 1830 1.094785 ACTTCACGCTTGTTGCAACT 58.905 45.000 28.61 6.80 43.06 3.16
1259 1838 1.143305 CAGAGGTCACTTCACGCTTG 58.857 55.000 0.00 0.00 0.00 4.01
1260 1839 0.601311 GCAGAGGTCACTTCACGCTT 60.601 55.000 0.00 0.00 0.00 4.68
1266 1845 2.771089 TGACATTGCAGAGGTCACTTC 58.229 47.619 11.63 0.00 43.53 3.01
1279 1858 8.929827 TTTGGCATTATTTCTATGTGACATTG 57.070 30.769 2.29 1.26 0.00 2.82
1313 1892 8.165239 TGTGCTTCATAATTAACACTTGTTCT 57.835 30.769 0.00 0.00 39.31 3.01
1330 1910 4.350368 TTGAGTAAGGTGATGTGCTTCA 57.650 40.909 0.00 0.00 0.00 3.02
1382 1963 4.316025 TTCTGTAAATTTGGCTAGGGCT 57.684 40.909 0.00 0.00 38.73 5.19
1400 2152 8.842280 TCACCAAATTTACGTTACTGAAATTCT 58.158 29.630 6.47 0.00 32.88 2.40
1413 2165 6.920758 TGGAAACAGAAATCACCAAATTTACG 59.079 34.615 0.00 0.00 35.01 3.18
1498 2255 5.290885 ACCGACTTTTTGTTGCTGAAATTTC 59.709 36.000 11.41 11.41 0.00 2.17
1507 2264 3.789224 CACAGTTACCGACTTTTTGTTGC 59.211 43.478 0.00 0.00 36.10 4.17
1508 2265 4.976987 ACACAGTTACCGACTTTTTGTTG 58.023 39.130 0.00 0.00 36.10 3.33
1515 2272 4.457257 GGTAGTAGACACAGTTACCGACTT 59.543 45.833 0.00 0.00 36.10 3.01
1516 2273 4.006319 GGTAGTAGACACAGTTACCGACT 58.994 47.826 0.00 0.00 39.89 4.18
1521 2278 3.837213 TGCGGTAGTAGACACAGTTAC 57.163 47.619 0.00 0.00 0.00 2.50
1522 2279 5.165676 CAATTGCGGTAGTAGACACAGTTA 58.834 41.667 0.00 0.00 0.00 2.24
1523 2280 3.955650 ATTGCGGTAGTAGACACAGTT 57.044 42.857 0.00 0.00 0.00 3.16
1524 2281 3.585862 CAATTGCGGTAGTAGACACAGT 58.414 45.455 0.00 0.00 0.00 3.55
1525 2282 2.348666 GCAATTGCGGTAGTAGACACAG 59.651 50.000 15.87 0.00 0.00 3.66
1540 2297 5.290158 GTCTGCCATAACATTTCAGCAATTG 59.710 40.000 0.00 0.00 0.00 2.32
1548 2305 2.365582 ACGGGTCTGCCATAACATTTC 58.634 47.619 0.00 0.00 36.17 2.17
1559 2316 4.915158 ACTAGAATAACTACGGGTCTGC 57.085 45.455 0.00 0.00 0.00 4.26
1610 2367 9.878599 CACTTTCGATGTAAGTTATCAGTTTTT 57.121 29.630 0.00 0.00 33.73 1.94
1611 2368 9.052759 ACACTTTCGATGTAAGTTATCAGTTTT 57.947 29.630 0.00 0.00 33.73 2.43
1612 2369 8.603242 ACACTTTCGATGTAAGTTATCAGTTT 57.397 30.769 0.00 0.00 33.73 2.66
1613 2370 9.701098 TTACACTTTCGATGTAAGTTATCAGTT 57.299 29.630 6.09 0.00 37.56 3.16
1614 2371 9.136952 GTTACACTTTCGATGTAAGTTATCAGT 57.863 33.333 9.73 3.02 41.87 3.41
1615 2372 8.592998 GGTTACACTTTCGATGTAAGTTATCAG 58.407 37.037 9.73 0.00 41.87 2.90
1622 2379 5.351465 AGCATGGTTACACTTTCGATGTAAG 59.649 40.000 9.73 2.44 41.87 2.34
1628 2385 4.633175 TGTAAGCATGGTTACACTTTCGA 58.367 39.130 35.04 18.24 37.86 3.71
1699 2464 7.283354 TGTCTGATTTCTAGCTATCTCTTTCGA 59.717 37.037 0.00 0.00 0.00 3.71
1709 2474 5.483937 TCAAACCCTGTCTGATTTCTAGCTA 59.516 40.000 0.00 0.00 0.00 3.32
1714 2479 7.234355 ACTATTTCAAACCCTGTCTGATTTCT 58.766 34.615 0.00 0.00 0.00 2.52
1715 2480 7.454260 ACTATTTCAAACCCTGTCTGATTTC 57.546 36.000 0.00 0.00 0.00 2.17
1716 2481 7.505585 TCAACTATTTCAAACCCTGTCTGATTT 59.494 33.333 0.00 0.00 0.00 2.17
1717 2482 7.004086 TCAACTATTTCAAACCCTGTCTGATT 58.996 34.615 0.00 0.00 0.00 2.57
1718 2483 6.542821 TCAACTATTTCAAACCCTGTCTGAT 58.457 36.000 0.00 0.00 0.00 2.90
1719 2484 5.935945 TCAACTATTTCAAACCCTGTCTGA 58.064 37.500 0.00 0.00 0.00 3.27
1720 2485 5.335191 GCTCAACTATTTCAAACCCTGTCTG 60.335 44.000 0.00 0.00 0.00 3.51
1721 2486 4.762251 GCTCAACTATTTCAAACCCTGTCT 59.238 41.667 0.00 0.00 0.00 3.41
1722 2487 4.082733 GGCTCAACTATTTCAAACCCTGTC 60.083 45.833 0.00 0.00 0.00 3.51
1738 2503 0.387239 GGAAACACGCATGGCTCAAC 60.387 55.000 0.00 0.00 0.00 3.18
1798 2563 5.009911 AGTGAAGCACTGACATTTGCAATTA 59.990 36.000 0.00 0.00 43.63 1.40
1810 2575 2.168313 TGAGACACAAGTGAAGCACTGA 59.832 45.455 7.28 0.00 44.62 3.41
1825 2590 1.224069 GCTCGCTGTTGCTTGAGACA 61.224 55.000 0.00 0.00 36.97 3.41
1859 2624 2.200337 GGCCTTGCGACTTTTGGGT 61.200 57.895 0.00 0.00 0.00 4.51
1891 2656 9.454859 CTTAGTCAGAAAGGAAGGAAAATACAT 57.545 33.333 0.00 0.00 0.00 2.29
1904 2669 8.614469 ATTCTCTTCAAACTTAGTCAGAAAGG 57.386 34.615 0.00 0.00 0.00 3.11
1943 2708 5.188988 ACATCCTGAGCATATATGGCAAT 57.811 39.130 14.51 0.00 0.00 3.56
2016 2790 1.976132 CTGCTCCCGTCCATCATGGT 61.976 60.000 2.79 0.00 39.03 3.55
2051 2825 2.879462 GGCGGCGTCTGAGTTACG 60.879 66.667 9.37 0.00 43.12 3.18
2512 3289 1.693083 GGTAGTGTTGTCATCGCCGC 61.693 60.000 0.00 0.00 0.00 6.53
2595 3372 4.070552 GAACCCGTCGAGCCTGCT 62.071 66.667 0.00 0.00 0.00 4.24
2921 3698 4.436998 GCGTCCACCACCTCCTCG 62.437 72.222 0.00 0.00 0.00 4.63
3165 3942 1.224592 GGCTCCGGTTGATGGTGAT 59.775 57.895 0.00 0.00 0.00 3.06
3252 4029 6.531021 TCTCCACGAAAAGGAATTAGTCTTT 58.469 36.000 0.00 0.00 34.08 2.52
3260 4037 4.508662 GTCTGATCTCCACGAAAAGGAAT 58.491 43.478 0.00 0.00 34.08 3.01
3264 4041 1.656095 GCGTCTGATCTCCACGAAAAG 59.344 52.381 13.60 0.00 35.49 2.27
3269 4046 1.018148 ACTAGCGTCTGATCTCCACG 58.982 55.000 7.14 7.14 36.60 4.94
3277 4055 2.469826 CAACAACACACTAGCGTCTGA 58.530 47.619 0.00 0.00 0.00 3.27
3278 4056 1.070577 GCAACAACACACTAGCGTCTG 60.071 52.381 0.00 0.00 0.00 3.51
3342 4126 1.496060 TTCGTCATGCCACTATCCCT 58.504 50.000 0.00 0.00 0.00 4.20
3366 4150 4.683781 TGCACAAACAAAAGAAACACACTC 59.316 37.500 0.00 0.00 0.00 3.51
3367 4151 4.626042 TGCACAAACAAAAGAAACACACT 58.374 34.783 0.00 0.00 0.00 3.55
3368 4152 4.981389 TGCACAAACAAAAGAAACACAC 57.019 36.364 0.00 0.00 0.00 3.82
3369 4153 6.183360 GCTAATGCACAAACAAAAGAAACACA 60.183 34.615 0.00 0.00 39.41 3.72
3425 5061 7.408756 AAAGCAAATCACATAATGGAGCTTA 57.591 32.000 0.00 0.00 38.69 3.09
3472 5108 6.519679 TGCATTTGTGCTTGAGATTAGATT 57.480 33.333 1.86 0.00 35.49 2.40
3483 5119 5.990386 TGTTTATGTGAATGCATTTGTGCTT 59.010 32.000 14.33 5.49 35.49 3.91
3589 5234 2.492088 CACCTGTACCGATGTCTTCTCA 59.508 50.000 0.00 0.00 0.00 3.27
3599 5244 0.178301 TTTGCACACACCTGTACCGA 59.822 50.000 0.00 0.00 0.00 4.69
3605 5250 2.937469 TGTCTTTTTGCACACACCTG 57.063 45.000 0.00 0.00 0.00 4.00
3657 5302 7.481798 GCTTGTACAAAAATACAAATCTCGGAG 59.518 37.037 10.03 0.00 42.88 4.63
3658 5303 7.302524 GCTTGTACAAAAATACAAATCTCGGA 58.697 34.615 10.03 0.00 42.88 4.55
3664 5309 7.151976 GTGGAGGCTTGTACAAAAATACAAAT 58.848 34.615 10.03 0.00 42.88 2.32
3668 5313 4.379082 CCGTGGAGGCTTGTACAAAAATAC 60.379 45.833 10.03 3.99 0.00 1.89
3676 5321 0.249398 ACATCCGTGGAGGCTTGTAC 59.751 55.000 0.00 0.00 40.77 2.90
3677 5322 0.535335 GACATCCGTGGAGGCTTGTA 59.465 55.000 0.00 0.00 40.77 2.41
3678 5323 1.194781 AGACATCCGTGGAGGCTTGT 61.195 55.000 0.00 0.00 40.77 3.16
3679 5324 0.036010 AAGACATCCGTGGAGGCTTG 60.036 55.000 0.00 0.00 40.77 4.01
3690 5336 9.325198 ACAAAATTTAACTTTGGAAAGACATCC 57.675 29.630 6.13 0.00 37.96 3.51
3738 5384 5.715439 AGATACATCCATTTGAGGGACAA 57.285 39.130 0.00 0.00 37.23 3.18
3739 5385 5.221722 GCTAGATACATCCATTTGAGGGACA 60.222 44.000 0.00 0.00 37.23 4.02
3740 5386 5.221722 TGCTAGATACATCCATTTGAGGGAC 60.222 44.000 0.00 0.00 37.23 4.46
3741 5387 4.907269 TGCTAGATACATCCATTTGAGGGA 59.093 41.667 0.00 0.00 39.14 4.20
3742 5388 4.999950 GTGCTAGATACATCCATTTGAGGG 59.000 45.833 0.00 0.00 0.00 4.30
3743 5389 5.862845 AGTGCTAGATACATCCATTTGAGG 58.137 41.667 0.00 0.00 0.00 3.86
3744 5390 8.147058 ACTTAGTGCTAGATACATCCATTTGAG 58.853 37.037 0.00 0.00 0.00 3.02
3745 5391 8.023021 ACTTAGTGCTAGATACATCCATTTGA 57.977 34.615 0.00 0.00 0.00 2.69
3746 5392 8.668510 AACTTAGTGCTAGATACATCCATTTG 57.331 34.615 0.00 0.00 0.00 2.32
3747 5393 9.988815 CTAACTTAGTGCTAGATACATCCATTT 57.011 33.333 0.00 0.00 0.00 2.32
3748 5394 9.148879 ACTAACTTAGTGCTAGATACATCCATT 57.851 33.333 0.33 0.00 37.69 3.16
3749 5395 8.713708 ACTAACTTAGTGCTAGATACATCCAT 57.286 34.615 0.33 0.00 37.69 3.41
3764 5410 8.713708 ATGGATGTATCTAGCACTAACTTAGT 57.286 34.615 0.00 0.00 40.28 2.24
3765 5411 9.988815 AAATGGATGTATCTAGCACTAACTTAG 57.011 33.333 0.00 0.00 0.00 2.18
3768 5414 9.988815 CTTAAATGGATGTATCTAGCACTAACT 57.011 33.333 0.00 0.00 0.00 2.24
3769 5415 9.209175 CCTTAAATGGATGTATCTAGCACTAAC 57.791 37.037 0.00 0.00 0.00 2.34
3770 5416 8.375506 CCCTTAAATGGATGTATCTAGCACTAA 58.624 37.037 0.00 0.00 0.00 2.24
3771 5417 7.733047 TCCCTTAAATGGATGTATCTAGCACTA 59.267 37.037 0.00 0.00 0.00 2.74
3772 5418 6.558775 TCCCTTAAATGGATGTATCTAGCACT 59.441 38.462 0.00 0.00 0.00 4.40
3773 5419 6.651225 GTCCCTTAAATGGATGTATCTAGCAC 59.349 42.308 0.00 0.00 33.65 4.40
3774 5420 6.328934 TGTCCCTTAAATGGATGTATCTAGCA 59.671 38.462 0.00 0.00 33.65 3.49
3775 5421 6.769512 TGTCCCTTAAATGGATGTATCTAGC 58.230 40.000 0.00 0.00 33.65 3.42
3776 5422 8.432805 ACTTGTCCCTTAAATGGATGTATCTAG 58.567 37.037 0.00 0.00 33.65 2.43
3777 5423 8.331931 ACTTGTCCCTTAAATGGATGTATCTA 57.668 34.615 0.00 0.00 33.65 1.98
3778 5424 7.213178 ACTTGTCCCTTAAATGGATGTATCT 57.787 36.000 0.00 0.00 33.65 1.98
3779 5425 7.881775 AACTTGTCCCTTAAATGGATGTATC 57.118 36.000 0.00 0.00 33.65 2.24
3780 5426 7.124147 CCAAACTTGTCCCTTAAATGGATGTAT 59.876 37.037 0.00 0.00 33.65 2.29
3781 5427 6.435904 CCAAACTTGTCCCTTAAATGGATGTA 59.564 38.462 0.00 0.00 33.65 2.29
3782 5428 5.245977 CCAAACTTGTCCCTTAAATGGATGT 59.754 40.000 0.00 0.00 33.65 3.06
3783 5429 5.337491 CCCAAACTTGTCCCTTAAATGGATG 60.337 44.000 0.00 0.00 33.65 3.51
3784 5430 4.777366 CCCAAACTTGTCCCTTAAATGGAT 59.223 41.667 0.00 0.00 33.65 3.41
3785 5431 4.140900 TCCCAAACTTGTCCCTTAAATGGA 60.141 41.667 0.00 0.00 0.00 3.41
3786 5432 4.021456 GTCCCAAACTTGTCCCTTAAATGG 60.021 45.833 0.00 0.00 0.00 3.16
3787 5433 4.586841 TGTCCCAAACTTGTCCCTTAAATG 59.413 41.667 0.00 0.00 0.00 2.32
3788 5434 4.810345 TGTCCCAAACTTGTCCCTTAAAT 58.190 39.130 0.00 0.00 0.00 1.40
3789 5435 4.252570 TGTCCCAAACTTGTCCCTTAAA 57.747 40.909 0.00 0.00 0.00 1.52
3790 5436 3.955524 TGTCCCAAACTTGTCCCTTAA 57.044 42.857 0.00 0.00 0.00 1.85
3791 5437 3.955524 TTGTCCCAAACTTGTCCCTTA 57.044 42.857 0.00 0.00 0.00 2.69
3792 5438 2.838637 TTGTCCCAAACTTGTCCCTT 57.161 45.000 0.00 0.00 0.00 3.95
3793 5439 2.838637 TTTGTCCCAAACTTGTCCCT 57.161 45.000 0.00 0.00 0.00 4.20
3794 5440 4.415881 AAATTTGTCCCAAACTTGTCCC 57.584 40.909 0.00 0.00 0.00 4.46
3814 5460 0.106335 TACTCCCACCGTGCGAAAAA 59.894 50.000 0.00 0.00 0.00 1.94
3815 5461 0.320073 CTACTCCCACCGTGCGAAAA 60.320 55.000 0.00 0.00 0.00 2.29
3816 5462 1.290955 CTACTCCCACCGTGCGAAA 59.709 57.895 0.00 0.00 0.00 3.46
3817 5463 2.642254 CCTACTCCCACCGTGCGAA 61.642 63.158 0.00 0.00 0.00 4.70
3818 5464 2.849096 ATCCTACTCCCACCGTGCGA 62.849 60.000 0.00 0.00 0.00 5.10
3819 5465 2.423898 ATCCTACTCCCACCGTGCG 61.424 63.158 0.00 0.00 0.00 5.34
3820 5466 1.144057 CATCCTACTCCCACCGTGC 59.856 63.158 0.00 0.00 0.00 5.34
3821 5467 0.902531 AACATCCTACTCCCACCGTG 59.097 55.000 0.00 0.00 0.00 4.94
3822 5468 2.024655 TCTAACATCCTACTCCCACCGT 60.025 50.000 0.00 0.00 0.00 4.83
3823 5469 2.361438 GTCTAACATCCTACTCCCACCG 59.639 54.545 0.00 0.00 0.00 4.94
3824 5470 3.644335 AGTCTAACATCCTACTCCCACC 58.356 50.000 0.00 0.00 0.00 4.61
3825 5471 4.957327 AGAAGTCTAACATCCTACTCCCAC 59.043 45.833 0.00 0.00 0.00 4.61
3826 5472 4.956700 CAGAAGTCTAACATCCTACTCCCA 59.043 45.833 0.00 0.00 0.00 4.37
3827 5473 4.957327 ACAGAAGTCTAACATCCTACTCCC 59.043 45.833 0.00 0.00 0.00 4.30
3828 5474 6.153000 TCAACAGAAGTCTAACATCCTACTCC 59.847 42.308 0.00 0.00 0.00 3.85
3829 5475 7.159322 TCAACAGAAGTCTAACATCCTACTC 57.841 40.000 0.00 0.00 0.00 2.59
3830 5476 7.179338 ACATCAACAGAAGTCTAACATCCTACT 59.821 37.037 0.00 0.00 0.00 2.57
3831 5477 7.324178 ACATCAACAGAAGTCTAACATCCTAC 58.676 38.462 0.00 0.00 0.00 3.18
3832 5478 7.363880 GGACATCAACAGAAGTCTAACATCCTA 60.364 40.741 0.00 0.00 32.24 2.94
3833 5479 6.365970 ACATCAACAGAAGTCTAACATCCT 57.634 37.500 0.00 0.00 0.00 3.24
3844 5490 0.798776 GGCACGGACATCAACAGAAG 59.201 55.000 0.00 0.00 0.00 2.85
3847 5494 0.950836 TTTGGCACGGACATCAACAG 59.049 50.000 0.00 0.00 0.00 3.16
3936 5584 7.933577 GGAATGTGGACATTGAGTATCTAATCA 59.066 37.037 9.73 0.00 45.72 2.57
3945 5593 3.843027 AGAGAGGAATGTGGACATTGAGT 59.157 43.478 9.73 0.00 45.72 3.41
3956 5604 6.779539 ACCATCAAAAGAAAAGAGAGGAATGT 59.220 34.615 0.00 0.00 0.00 2.71
3989 5637 2.281484 GAACAGAGGGCACGGCAA 60.281 61.111 0.00 0.00 0.00 4.52
3998 5646 4.662278 TGTATTTTCCCCAAGAACAGAGG 58.338 43.478 0.00 0.00 32.95 3.69
4001 5649 7.670364 AGAAATTGTATTTTCCCCAAGAACAG 58.330 34.615 0.00 0.00 36.47 3.16
4041 5689 9.716507 CCATTCTTCCAAACACTAATTATTACG 57.283 33.333 0.00 0.00 0.00 3.18
4059 5707 9.794685 GAAAGAGAATTACCAAATCCATTCTTC 57.205 33.333 0.00 0.00 36.35 2.87
4062 5710 7.985476 TCGAAAGAGAATTACCAAATCCATTC 58.015 34.615 0.00 0.00 34.84 2.67
4063 5711 7.938140 TCGAAAGAGAATTACCAAATCCATT 57.062 32.000 0.00 0.00 34.84 3.16
4080 5728 1.651987 GCCCGAACATCATCGAAAGA 58.348 50.000 0.00 0.00 45.48 2.52
4081 5729 0.301687 CGCCCGAACATCATCGAAAG 59.698 55.000 0.00 0.00 45.48 2.62
4082 5730 1.701545 GCGCCCGAACATCATCGAAA 61.702 55.000 0.00 0.00 45.48 3.46
4083 5731 2.171079 GCGCCCGAACATCATCGAA 61.171 57.895 0.00 0.00 45.48 3.71
4084 5732 2.584970 GCGCCCGAACATCATCGA 60.585 61.111 0.00 0.00 45.48 3.59
4085 5733 2.889988 TGCGCCCGAACATCATCG 60.890 61.111 4.18 0.00 42.37 3.84
4086 5734 1.766143 GAGTGCGCCCGAACATCATC 61.766 60.000 4.18 0.00 0.00 2.92
4087 5735 1.815421 GAGTGCGCCCGAACATCAT 60.815 57.895 4.18 0.00 0.00 2.45
4088 5736 2.434185 GAGTGCGCCCGAACATCA 60.434 61.111 4.18 0.00 0.00 3.07
4089 5737 3.554692 CGAGTGCGCCCGAACATC 61.555 66.667 4.18 0.00 0.00 3.06
4090 5738 3.371097 ATCGAGTGCGCCCGAACAT 62.371 57.895 8.25 0.00 38.36 2.71
4091 5739 3.982372 GATCGAGTGCGCCCGAACA 62.982 63.158 8.25 0.00 38.36 3.18
4092 5740 2.332362 TAGATCGAGTGCGCCCGAAC 62.332 60.000 8.25 5.54 38.36 3.95
4093 5741 1.659622 TTAGATCGAGTGCGCCCGAA 61.660 55.000 8.25 0.00 38.36 4.30
4094 5742 1.659622 TTTAGATCGAGTGCGCCCGA 61.660 55.000 6.28 6.28 39.25 5.14
4095 5743 0.597637 ATTTAGATCGAGTGCGCCCG 60.598 55.000 4.18 6.24 37.46 6.13
4096 5744 1.583054 AATTTAGATCGAGTGCGCCC 58.417 50.000 4.18 0.00 37.46 6.13
4097 5745 5.862323 TCTTATAATTTAGATCGAGTGCGCC 59.138 40.000 4.18 0.00 37.46 6.53
4098 5746 6.929587 TCTTATAATTTAGATCGAGTGCGC 57.070 37.500 0.00 0.00 37.46 6.09
4099 5747 9.347934 AGAATCTTATAATTTAGATCGAGTGCG 57.652 33.333 0.00 0.00 39.35 5.34
4111 5759 9.403583 TGCGGGTTAAGAAGAATCTTATAATTT 57.596 29.630 0.00 0.00 45.24 1.82
4112 5760 8.837389 GTGCGGGTTAAGAAGAATCTTATAATT 58.163 33.333 0.00 0.00 45.24 1.40
4113 5761 7.990886 TGTGCGGGTTAAGAAGAATCTTATAAT 59.009 33.333 0.00 0.00 45.24 1.28
4114 5762 7.279313 GTGTGCGGGTTAAGAAGAATCTTATAA 59.721 37.037 0.00 0.00 45.24 0.98
4115 5763 6.759827 GTGTGCGGGTTAAGAAGAATCTTATA 59.240 38.462 0.00 0.00 45.24 0.98
4116 5764 5.585047 GTGTGCGGGTTAAGAAGAATCTTAT 59.415 40.000 0.00 0.00 45.24 1.73
4117 5765 4.933400 GTGTGCGGGTTAAGAAGAATCTTA 59.067 41.667 0.00 0.00 44.11 2.10
4118 5766 7.980515 ACGTGTGCGGGTTAAGAAGAATCTT 62.981 44.000 0.00 0.00 44.50 2.40
4119 5767 3.335579 GTGTGCGGGTTAAGAAGAATCT 58.664 45.455 0.00 0.00 37.57 2.40
4120 5768 2.093783 CGTGTGCGGGTTAAGAAGAATC 59.906 50.000 0.00 0.00 0.00 2.52
4121 5769 2.073816 CGTGTGCGGGTTAAGAAGAAT 58.926 47.619 0.00 0.00 0.00 2.40
4122 5770 1.202557 ACGTGTGCGGGTTAAGAAGAA 60.203 47.619 0.00 0.00 43.45 2.52
4123 5771 0.390124 ACGTGTGCGGGTTAAGAAGA 59.610 50.000 0.00 0.00 43.45 2.87
4124 5772 0.511221 CACGTGTGCGGGTTAAGAAG 59.489 55.000 7.58 0.00 43.45 2.85
4125 5773 2.607457 CACGTGTGCGGGTTAAGAA 58.393 52.632 7.58 0.00 43.45 2.52
4126 5774 4.347096 CACGTGTGCGGGTTAAGA 57.653 55.556 7.58 0.00 43.45 2.10
4186 5834 9.504708 TCGGGTTCTAATGTACAAAATAAAAGA 57.495 29.630 0.00 0.00 0.00 2.52
4193 5841 8.605746 CGATTAATCGGGTTCTAATGTACAAAA 58.394 33.333 26.61 0.00 45.93 2.44
4194 5842 8.133754 CGATTAATCGGGTTCTAATGTACAAA 57.866 34.615 26.61 0.00 45.93 2.83
4195 5843 7.703298 CGATTAATCGGGTTCTAATGTACAA 57.297 36.000 26.61 0.00 45.93 2.41
4207 5855 7.011389 CATATCATTATGTGCGATTAATCGGGT 59.989 37.037 32.56 16.05 39.29 5.28
4208 5856 7.347448 CATATCATTATGTGCGATTAATCGGG 58.653 38.462 32.56 12.09 39.29 5.14
4209 5857 7.347448 CCATATCATTATGTGCGATTAATCGG 58.653 38.462 32.56 18.09 40.70 4.18
4210 5858 7.347448 CCCATATCATTATGTGCGATTAATCG 58.653 38.462 29.18 29.18 41.85 3.34
4211 5859 7.283127 ACCCCATATCATTATGTGCGATTAATC 59.717 37.037 5.30 5.30 34.54 1.75
4212 5860 7.118723 ACCCCATATCATTATGTGCGATTAAT 58.881 34.615 0.00 0.00 34.54 1.40
4213 5861 6.480763 ACCCCATATCATTATGTGCGATTAA 58.519 36.000 0.00 0.00 34.54 1.40
4214 5862 6.061022 ACCCCATATCATTATGTGCGATTA 57.939 37.500 0.00 0.00 34.54 1.75
4215 5863 4.922206 ACCCCATATCATTATGTGCGATT 58.078 39.130 0.00 0.00 34.54 3.34
4216 5864 4.574674 ACCCCATATCATTATGTGCGAT 57.425 40.909 0.00 0.00 34.54 4.58
4217 5865 5.491323 TTACCCCATATCATTATGTGCGA 57.509 39.130 0.00 0.00 34.54 5.10
4218 5866 5.647658 ACATTACCCCATATCATTATGTGCG 59.352 40.000 0.00 0.00 34.54 5.34
4219 5867 7.394359 AGAACATTACCCCATATCATTATGTGC 59.606 37.037 0.00 0.00 34.54 4.57
4220 5868 8.868522 AGAACATTACCCCATATCATTATGTG 57.131 34.615 0.00 0.00 34.54 3.21
4221 5869 9.881773 AAAGAACATTACCCCATATCATTATGT 57.118 29.630 0.00 0.00 34.54 2.29
4225 5873 8.413229 CGAAAAAGAACATTACCCCATATCATT 58.587 33.333 0.00 0.00 0.00 2.57
4226 5874 7.470009 GCGAAAAAGAACATTACCCCATATCAT 60.470 37.037 0.00 0.00 0.00 2.45
4227 5875 6.183360 GCGAAAAAGAACATTACCCCATATCA 60.183 38.462 0.00 0.00 0.00 2.15
4228 5876 6.183360 TGCGAAAAAGAACATTACCCCATATC 60.183 38.462 0.00 0.00 0.00 1.63
4229 5877 5.654650 TGCGAAAAAGAACATTACCCCATAT 59.345 36.000 0.00 0.00 0.00 1.78
4230 5878 5.010933 TGCGAAAAAGAACATTACCCCATA 58.989 37.500 0.00 0.00 0.00 2.74
4231 5879 3.829601 TGCGAAAAAGAACATTACCCCAT 59.170 39.130 0.00 0.00 0.00 4.00
4232 5880 3.223435 TGCGAAAAAGAACATTACCCCA 58.777 40.909 0.00 0.00 0.00 4.96
4233 5881 3.926821 TGCGAAAAAGAACATTACCCC 57.073 42.857 0.00 0.00 0.00 4.95
4234 5882 6.617879 ACTAATGCGAAAAAGAACATTACCC 58.382 36.000 0.00 0.00 34.69 3.69
4235 5883 8.515473 AAACTAATGCGAAAAAGAACATTACC 57.485 30.769 0.00 0.00 34.69 2.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.