AutoCloner

Multiple sequence alignment - TraesCS7A01G541600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7A01G541600	chr7A	100.000	2354	0	0	1	2354	718208842	718206489	0.000000e+00	4348.0
1	TraesCS7A01G541600	chr7A	89.174	1053	79	15	642	1662	718313234	718312185	0.000000e+00	1280.0
2	TraesCS7A01G541600	chr7A	82.280	649	76	11	671	1302	718252392	718251766	2.070000e-145	525.0
3	TraesCS7A01G541600	chr7A	90.909	110	10	0	2097	2206	718311617	718311508	5.240000e-32	148.0
4	TraesCS7A01G541600	chr7A	80.357	112	19	1	1704	1815	718312173	718312065	5.390000e-12	82.4
5	TraesCS7A01G541600	chr7D	87.616	1082	98	10	642	1702	623389981	623391047	0.000000e+00	1223.0
6	TraesCS7A01G541600	chr7D	84.743	1088	103	13	642	1702	623293267	623294318	0.000000e+00	1031.0
7	TraesCS7A01G541600	chr7D	84.651	1088	104	13	642	1702	623283268	623284319	0.000000e+00	1026.0
8	TraesCS7A01G541600	chr7D	90.015	661	45	6	1696	2354	623391080	623391721	0.000000e+00	835.0
9	TraesCS7A01G541600	chr7D	89.771	655	58	7	1	647	51420179	51419526	0.000000e+00	830.0
10	TraesCS7A01G541600	chr7D	89.498	657	57	9	1	647	370974289	370973635	0.000000e+00	821.0
11	TraesCS7A01G541600	chr7D	93.651	189	12	0	1697	1885	623284353	623284541	1.380000e-72	283.0
12	TraesCS7A01G541600	chr7D	93.651	189	12	0	1697	1885	623294352	623294540	1.380000e-72	283.0
13	TraesCS7A01G541600	chr3D	89.877	652	57	7	1	644	604795804	604796454	0.000000e+00	830.0
14	TraesCS7A01G541600	chr3D	89.538	650	59	7	1	642	578315750	578316398	0.000000e+00	815.0
15	TraesCS7A01G541600	chr6D	89.612	645	62	5	2	644	239294509	239295150	0.000000e+00	815.0
16	TraesCS7A01G541600	chr4D	89.313	655	60	8	1	647	329142375	329141723	0.000000e+00	813.0
17	TraesCS7A01G541600	chr4D	89.160	655	61	7	1	647	318592381	318591729	0.000000e+00	808.0
18	TraesCS7A01G541600	chr1A	89.417	652	59	7	1	647	218120997	218120351	0.000000e+00	813.0
19	TraesCS7A01G541600	chr1A	89.144	654	60	8	1	647	73811203	73810554	0.000000e+00	804.0
20	TraesCS7A01G541600	chr7B	85.786	795	69	20	720	1472	720812647	720811855	0.000000e+00	802.0
21	TraesCS7A01G541600	chr7B	88.614	202	17	3	1696	1892	720811559	720811359	8.410000e-60	241.0
22	TraesCS7A01G541600	chr7B	89.344	122	10	1	2236	2354	720810965	720810844	1.460000e-32	150.0
23	TraesCS7A01G541600	chr7B	86.667	135	17	1	2220	2354	720926790	720926657	5.240000e-32	148.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7A01G541600	chr7A	718206489	718208842	2353	True	4348.000000	4348	100.000000	1	2354	1	chr7A.!!$R1	2353
1	TraesCS7A01G541600	chr7A	718251766	718252392	626	True	525.000000	525	82.280000	671	1302	1	chr7A.!!$R2	631
2	TraesCS7A01G541600	chr7A	718311508	718313234	1726	True	503.466667	1280	86.813333	642	2206	3	chr7A.!!$R3	1564
3	TraesCS7A01G541600	chr7D	623389981	623391721	1740	False	1029.000000	1223	88.815500	642	2354	2	chr7D.!!$F3	1712
4	TraesCS7A01G541600	chr7D	51419526	51420179	653	True	830.000000	830	89.771000	1	647	1	chr7D.!!$R1	646
5	TraesCS7A01G541600	chr7D	370973635	370974289	654	True	821.000000	821	89.498000	1	647	1	chr7D.!!$R2	646
6	TraesCS7A01G541600	chr7D	623293267	623294540	1273	False	657.000000	1031	89.197000	642	1885	2	chr7D.!!$F2	1243
7	TraesCS7A01G541600	chr7D	623283268	623284541	1273	False	654.500000	1026	89.151000	642	1885	2	chr7D.!!$F1	1243
8	TraesCS7A01G541600	chr3D	604795804	604796454	650	False	830.000000	830	89.877000	1	644	1	chr3D.!!$F2	643
9	TraesCS7A01G541600	chr3D	578315750	578316398	648	False	815.000000	815	89.538000	1	642	1	chr3D.!!$F1	641
10	TraesCS7A01G541600	chr6D	239294509	239295150	641	False	815.000000	815	89.612000	2	644	1	chr6D.!!$F1	642
11	TraesCS7A01G541600	chr4D	329141723	329142375	652	True	813.000000	813	89.313000	1	647	1	chr4D.!!$R2	646
12	TraesCS7A01G541600	chr4D	318591729	318592381	652	True	808.000000	808	89.160000	1	647	1	chr4D.!!$R1	646
13	TraesCS7A01G541600	chr1A	218120351	218120997	646	True	813.000000	813	89.417000	1	647	1	chr1A.!!$R2	646
14	TraesCS7A01G541600	chr1A	73810554	73811203	649	True	804.000000	804	89.144000	1	647	1	chr1A.!!$R1	646
15	TraesCS7A01G541600	chr7B	720810844	720812647	1803	True	397.666667	802	87.914667	720	2354	3	chr7B.!!$R2	1634

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
887	936	0.324943	GTCCAAGCTTCCTGTGCCTA	59.675	55.0	0.0	0.0	0.0	3.93	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1785	1979	1.341976	GGCTGGCCTAATGGAAAAGGA	60.342	52.381	3.32	0.0	34.58	3.36	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
92	97	3.874392	AAAGTTGCCATGTCTATTGCC	57.126	42.857	0.00	0.00	0.00	4.52
137	143	7.643569	ACACTGAAATTGCCATGATATGTTA	57.356	32.000	0.00	0.00	0.00	2.41
140	146	7.975058	CACTGAAATTGCCATGATATGTTACAA	59.025	33.333	0.00	0.00	0.00	2.41
266	274	6.215121	TGCACTTAAAATTGTCATGGTTCAG	58.785	36.000	0.00	0.00	0.00	3.02
299	311	8.877864	AAATCATGGTCAAAATACTGGAGTTA	57.122	30.769	0.00	0.00	0.00	2.24
300	312	9.479549	AAATCATGGTCAAAATACTGGAGTTAT	57.520	29.630	0.00	0.00	0.00	1.89
312	324	9.553064	AAATACTGGAGTTATCATCATCAAGAC	57.447	33.333	0.00	0.00	0.00	3.01
375	387	6.713276	TGGCACCTTTAGTTTAAGCACTATA	58.287	36.000	0.00	0.00	0.00	1.31
410	422	4.686191	AAACATCATGGCAACTTTTGGA	57.314	36.364	0.00	0.00	37.61	3.53
417	430	4.633565	TCATGGCAACTTTTGGACAAAAAC	59.366	37.500	10.95	2.53	39.49	2.43
443	459	6.713792	TTTCGTCGAAACATATCAACATGA	57.286	33.333	16.22	0.00	0.00	3.07
447	463	5.063438	CGTCGAAACATATCAACATGAGGTT	59.937	40.000	0.00	0.00	41.47	3.50
490	506	6.477688	TCGAGACGGATTTAATGATGTAAACC	59.522	38.462	0.00	0.00	0.00	3.27
555	574	3.386402	AGCCAAAAACCGAAAAGATTCCA	59.614	39.130	0.00	0.00	31.52	3.53
624	643	1.270785	TGTGGACGATGTGCAAGATGT	60.271	47.619	0.00	0.00	35.32	3.06
636	655	3.940852	GTGCAAGATGTCACATATGTGGA	59.059	43.478	30.56	19.93	45.65	4.02
655	674	2.591311	CGTTAGTGTTGTGCGCGGT	61.591	57.895	8.83	0.00	0.00	5.68
658	677	0.601576	TTAGTGTTGTGCGCGGTCAT	60.602	50.000	8.83	0.00	0.00	3.06
663	682	1.889573	TTGTGCGCGGTCATGAACA	60.890	52.632	12.13	1.22	0.00	3.18
669	694	0.865111	CGCGGTCATGAACACAAAGA	59.135	50.000	12.13	0.00	0.00	2.52
673	698	4.651994	GCGGTCATGAACACAAAGATTAG	58.348	43.478	12.13	0.00	0.00	1.73
688	713	5.476091	AAGATTAGCCTTTCCCTAGATCG	57.524	43.478	0.00	0.00	0.00	3.69
771	802	1.058284	TTTAGGGGCGTACACCAACT	58.942	50.000	1.65	2.15	0.00	3.16
826	867	1.079543	CCGCAGAGAACTGTCCCAG	60.080	63.158	0.00	0.00	45.04	4.45
829	870	2.061220	CAGAGAACTGTCCCAGGCA	58.939	57.895	0.00	0.00	39.11	4.75
877	926	3.570212	AGGGTGCCGTCCAAGCTT	61.570	61.111	0.00	0.00	0.00	3.74
887	936	0.324943	GTCCAAGCTTCCTGTGCCTA	59.675	55.000	0.00	0.00	0.00	3.93
940	999	7.121168	CCCAGATTTTAACATTGTTAGCTCAGA	59.879	37.037	9.10	0.00	0.00	3.27
943	1002	8.607459	AGATTTTAACATTGTTAGCTCAGATCG	58.393	33.333	9.10	0.00	0.00	3.69
988	1047	0.753479	ATTGGACGCACAACCACCAA	60.753	50.000	0.00	0.00	43.23	3.67
997	1056	1.370414	CAACCACCAAAAGCGAGCG	60.370	57.895	0.00	0.00	0.00	5.03
1005	1064	0.387112	CAAAAGCGAGCGCAATGGAA	60.387	50.000	17.68	0.00	44.88	3.53
1032	1091	2.738521	AACGCGCATGACGAGCTT	60.739	55.556	5.73	5.74	46.51	3.74
1052	1111	2.681778	CCTCGAGCTCACCCTGGT	60.682	66.667	15.40	0.00	0.00	4.00
1160	1246	3.716006	CCACCAGAACGCGCACAG	61.716	66.667	5.73	0.00	0.00	3.66
1248	1364	4.853050	GCTGCTGCTCGGATGCCT	62.853	66.667	8.53	0.00	36.03	4.75
1354	1470	0.323629	CTTGTCCCTCCGGCTGTAAA	59.676	55.000	0.00	0.00	0.00	2.01
1355	1471	0.988832	TTGTCCCTCCGGCTGTAAAT	59.011	50.000	0.00	0.00	0.00	1.40
1365	1481	1.087771	GGCTGTAAATGGTCGGTCGG	61.088	60.000	0.00	0.00	0.00	4.79
1473	1590	1.065491	TCAAGCTCGTGTTGGGCATAT	60.065	47.619	0.00	0.00	0.00	1.78
1479	1596	2.352651	CTCGTGTTGGGCATATTGTCAG	59.647	50.000	0.00	0.00	0.00	3.51
1561	1714	5.991933	TGAACTGAATCTCTAGAGCTTGT	57.008	39.130	15.35	4.35	0.00	3.16
1629	1782	9.604626	GCTTGTATGTGCTTCTTTATGATAATC	57.395	33.333	0.00	0.00	0.00	1.75
1669	1824	9.853555	AAAATCAAGATATATGCTACTCTCTCG	57.146	33.333	0.00	0.00	0.00	4.04
1693	1848	4.935808	GTCCCGAATTAGTTGTCACAGAAT	59.064	41.667	0.00	0.00	0.00	2.40
1702	1896	7.759489	TTAGTTGTCACAGAATTGGCTAAAT	57.241	32.000	0.00	0.00	0.00	1.40
1712	1906	7.756722	CACAGAATTGGCTAAATGTTTCCTTAG	59.243	37.037	0.00	0.00	0.00	2.18
1775	1969	3.853355	TTGGCCAACACCAAATTCATT	57.147	38.095	16.05	0.00	46.65	2.57
1779	1973	4.244862	GGCCAACACCAAATTCATTAGTG	58.755	43.478	0.00	0.00	33.11	2.74
1785	1979	3.511146	CACCAAATTCATTAGTGCCACCT	59.489	43.478	0.00	0.00	0.00	4.00
2005	2310	4.957327	AGATAGTACTCCCAAGACTCCAAC	59.043	45.833	0.00	0.00	0.00	3.77
2070	2629	5.128919	ACAGCTCAGACATTTCTCAAAACT	58.871	37.500	0.00	0.00	0.00	2.66
2163	2722	3.073798	TGAGAGGAAATAAGCCCAACACA	59.926	43.478	0.00	0.00	0.00	3.72
2197	2756	6.894339	AGTTGGGTTTACTTCCACAATAAG	57.106	37.500	0.00	0.00	32.00	1.73
2202	2761	5.350640	GGGTTTACTTCCACAATAAGTCTCG	59.649	44.000	0.00	0.00	38.18	4.04
2206	2765	4.566987	ACTTCCACAATAAGTCTCGAACC	58.433	43.478	0.00	0.00	31.56	3.62
2231	2790	8.440833	CCTGTCGTAGTTTTAAGACATTAAAGG	58.559	37.037	0.00	0.00	43.86	3.11
2241	2800	4.773323	AGACATTAAAGGTGCTCAAAGC	57.227	40.909	0.00	0.00	42.82	3.51
2290	2849	9.265901	AGTTACTTTCTTTCGATCATATCCATG	57.734	33.333	0.00	0.00	0.00	3.66
2310	2869	7.341030	TCCATGAAGAGTACATTGTCATCAAT	58.659	34.615	0.00	0.00	44.02	2.57

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
230	238	6.720112	ATTTTAAGTGCATGTATCATGGCT	57.280	33.333	10.96	0.00	0.00	4.75
276	288	8.274322	TGATAACTCCAGTATTTTGACCATGAT	58.726	33.333	0.00	0.00	0.00	2.45
288	300	8.147058	GTGTCTTGATGATGATAACTCCAGTAT	58.853	37.037	0.00	0.00	0.00	2.12
299	311	7.123098	TGGCAATTTTAGTGTCTTGATGATGAT	59.877	33.333	0.00	0.00	0.00	2.45
300	312	6.433716	TGGCAATTTTAGTGTCTTGATGATGA	59.566	34.615	0.00	0.00	0.00	2.92
310	322	4.708726	AGAGCATGGCAATTTTAGTGTC	57.291	40.909	0.00	0.00	0.00	3.67
312	324	5.565592	TGTAGAGCATGGCAATTTTAGTG	57.434	39.130	0.00	0.00	0.00	2.74
375	387	6.103997	CCATGATGTTTACACCGTAGTTACT	58.896	40.000	0.00	0.00	0.00	2.24
384	396	4.519540	AAGTTGCCATGATGTTTACACC	57.480	40.909	0.00	0.00	0.00	4.16
410	422	6.879188	ATGTTTCGACGAAATTGTTTTTGT	57.121	29.167	24.48	2.82	41.27	2.83
417	430	7.691877	TCATGTTGATATGTTTCGACGAAATTG	59.308	33.333	24.48	5.38	33.97	2.32
443	459	5.634020	CGACGAGATCTTCAAAACTAAACCT	59.366	40.000	0.00	0.00	0.00	3.50
447	463	6.084925	GTCTCGACGAGATCTTCAAAACTAA	58.915	40.000	28.81	0.00	40.98	2.24
482	498	8.980143	AAATCGAATGAAAAATCGGTTTACAT	57.020	26.923	4.77	1.01	46.96	2.29
526	543	7.851387	TCTTTTCGGTTTTTGGCTTAAATTT	57.149	28.000	0.00	0.00	0.00	1.82
528	545	7.172532	GGAATCTTTTCGGTTTTTGGCTTAAAT	59.827	33.333	0.00	0.00	32.28	1.40
544	563	5.831702	ATGACATCAGCTGGAATCTTTTC	57.168	39.130	15.13	0.45	0.00	2.29
555	574	5.296035	CACATGTGAACATATGACATCAGCT	59.704	40.000	21.64	0.00	32.78	4.24
636	655	2.591311	CCGCGCACAACACTAACGT	61.591	57.895	8.75	0.00	0.00	3.99
655	674	6.071952	GGAAAGGCTAATCTTTGTGTTCATGA	60.072	38.462	0.00	0.00	37.13	3.07
658	677	4.522789	GGGAAAGGCTAATCTTTGTGTTCA	59.477	41.667	0.00	0.00	37.13	3.18
663	682	6.582929	ATCTAGGGAAAGGCTAATCTTTGT	57.417	37.500	0.00	0.00	37.13	2.83
669	694	5.130477	TCAAACGATCTAGGGAAAGGCTAAT	59.870	40.000	0.00	0.00	0.00	1.73
673	698	3.118738	TCTCAAACGATCTAGGGAAAGGC	60.119	47.826	0.00	0.00	0.00	4.35
688	713	4.930463	GAAGATTCCTTCGGTCTCAAAC	57.070	45.455	0.00	0.00	39.36	2.93
709	734	2.499205	CTGCATGCATGGCCCAAG	59.501	61.111	27.34	2.46	0.00	3.61
771	802	2.487934	GACGTACGACCCTATCAGCTA	58.512	52.381	24.41	0.00	0.00	3.32
826	867	3.253230	GTGGTGCTAATTGAATTGTGCC	58.747	45.455	12.62	5.80	0.00	5.01
829	870	3.258123	GGGTGTGGTGCTAATTGAATTGT	59.742	43.478	0.00	0.00	0.00	2.71
887	936	1.696097	AACGGCCAAGTGAGTCCTGT	61.696	55.000	2.24	0.00	0.00	4.00
940	999	0.673644	GCTGTGTGGGTTACTGCGAT	60.674	55.000	0.00	0.00	34.21	4.58
943	1002	2.325082	CGGCTGTGTGGGTTACTGC	61.325	63.158	0.00	0.00	40.79	4.40
971	1030	0.965866	TTTTGGTGGTTGTGCGTCCA	60.966	50.000	0.00	0.00	0.00	4.02
988	1047	1.210155	GTTCCATTGCGCTCGCTTT	59.790	52.632	9.73	0.00	42.51	3.51
997	1056	0.313672	TTGGTCGCTTGTTCCATTGC	59.686	50.000	0.00	0.00	0.00	3.56
1013	1072	4.505217	GCTCGTCATGCGCGTTGG	62.505	66.667	8.43	0.00	41.07	3.77
1189	1275	3.503363	GTCAGCAGCGGCATCACC	61.503	66.667	12.44	0.00	44.61	4.02
1354	1470	1.445716	GAGATCGACCGACCGACCAT	61.446	60.000	1.45	0.00	41.70	3.55
1355	1471	2.045634	AGATCGACCGACCGACCA	60.046	61.111	1.45	0.00	41.70	4.02
1365	1481	4.494855	GCAACCATTTTAGCAGAGATCGAC	60.495	45.833	0.00	0.00	0.00	4.20
1473	1590	4.580167	CCCACATGAGTTTCTTTCTGACAA	59.420	41.667	0.00	0.00	0.00	3.18
1479	1596	2.229784	CCTGCCCACATGAGTTTCTTTC	59.770	50.000	0.00	0.00	0.00	2.62
1532	1683	9.415008	AGCTCTAGAGATTCAGTTCAATACTTA	57.585	33.333	24.24	0.00	33.85	2.24
1537	1688	6.945218	ACAAGCTCTAGAGATTCAGTTCAAT	58.055	36.000	24.24	0.00	34.42	2.57
1561	1714	0.690192	TGTTTCATCCCAAGGAGCGA	59.310	50.000	0.00	0.00	34.05	4.93
1658	1811	1.153208	TCGGGACCGAGAGAGTAGC	60.153	63.158	9.76	0.00	44.01	3.58
1669	1824	3.000727	CTGTGACAACTAATTCGGGACC	58.999	50.000	0.00	0.00	0.00	4.46
1681	1836	5.772521	ACATTTAGCCAATTCTGTGACAAC	58.227	37.500	0.00	0.00	0.00	3.32
1683	1838	6.403866	AAACATTTAGCCAATTCTGTGACA	57.596	33.333	0.00	0.00	0.00	3.58
1712	1906	7.208080	TGTTCTTATTCTAGATTCCTAACGGC	58.792	38.462	0.00	0.00	0.00	5.68
1741	1935	4.344679	TGTTGGCCAACATCTCAATTTTCT	59.655	37.500	40.89	0.00	45.42	2.52
1772	1966	2.755103	GGAAAAGGAGGTGGCACTAATG	59.245	50.000	18.45	0.00	0.00	1.90
1775	1969	1.440618	TGGAAAAGGAGGTGGCACTA	58.559	50.000	18.45	0.00	0.00	2.74
1779	1973	2.379005	CCTAATGGAAAAGGAGGTGGC	58.621	52.381	0.00	0.00	34.58	5.01
1785	1979	1.341976	GGCTGGCCTAATGGAAAAGGA	60.342	52.381	3.32	0.00	34.58	3.36
1889	2091	9.871238	CCTAAAACATGTACCGCTAGATAATAT	57.129	33.333	0.00	0.00	0.00	1.28
1992	2297	3.068165	GGTTCAAAAGTTGGAGTCTTGGG	59.932	47.826	0.00	0.00	0.00	4.12
2005	2310	5.712152	ATAAGCAGTTGGAGGTTCAAAAG	57.288	39.130	0.00	0.00	0.00	2.27
2038	2343	7.814642	AGAAATGTCTGAGCTGTAAATTTGAG	58.185	34.615	0.00	0.00	30.83	3.02
2040	2345	7.587629	TGAGAAATGTCTGAGCTGTAAATTTG	58.412	34.615	0.00	0.00	32.80	2.32
2044	2603	7.283127	AGTTTTGAGAAATGTCTGAGCTGTAAA	59.717	33.333	0.00	0.00	32.80	2.01
2048	2607	5.686159	AGTTTTGAGAAATGTCTGAGCTG	57.314	39.130	0.00	0.00	32.80	4.24
2095	2654	9.467796	TCATTGTCGAGACTATATAATGGAGAT	57.532	33.333	4.78	0.00	0.00	2.75
2106	2665	5.360591	GTCCCAATTCATTGTCGAGACTAT	58.639	41.667	4.78	0.00	36.06	2.12
2163	2722	2.748209	AACCCAACTACTTGGCTGTT	57.252	45.000	0.00	0.00	45.32	3.16
2188	2747	3.926616	ACAGGTTCGAGACTTATTGTGG	58.073	45.455	0.00	0.00	0.00	4.17
2202	2761	7.417496	AATGTCTTAAAACTACGACAGGTTC	57.583	36.000	0.00	0.00	39.46	3.62
2206	2765	8.985805	ACCTTTAATGTCTTAAAACTACGACAG	58.014	33.333	0.00	0.00	39.46	3.51
2211	2770	8.780249	TGAGCACCTTTAATGTCTTAAAACTAC	58.220	33.333	0.00	0.00	36.61	2.73
2268	2827	8.206867	TCTTCATGGATATGATCGAAAGAAAGT	58.793	33.333	0.00	0.00	42.60	2.66
2272	2831	7.295322	ACTCTTCATGGATATGATCGAAAGA	57.705	36.000	0.00	0.00	42.60	2.52
2277	2836	7.816513	ACAATGTACTCTTCATGGATATGATCG	59.183	37.037	0.00	0.00	42.60	3.69

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.