Multiple sequence alignment - TraesCS7A01G541000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G541000 chr7A 100.000 3691 0 0 1 3691 717743772 717747462 0.000000e+00 6817
1 TraesCS7A01G541000 chr7A 77.169 876 172 22 1294 2157 716403648 716404507 5.540000e-133 484
2 TraesCS7A01G541000 chr7A 77.831 830 150 29 1388 2200 716246941 716247753 1.990000e-132 483
3 TraesCS7A01G541000 chr7A 85.171 263 35 4 783 1043 242982717 242982977 2.190000e-67 267
4 TraesCS7A01G541000 chr7A 83.746 283 40 5 931 1210 716246522 716246801 2.830000e-66 263
5 TraesCS7A01G541000 chr7B 91.502 2483 139 21 544 3023 717750626 717748213 0.000000e+00 3350
6 TraesCS7A01G541000 chr7B 91.155 2510 161 18 544 3022 719720418 719722897 0.000000e+00 3349
7 TraesCS7A01G541000 chr7B 90.588 425 27 8 3278 3691 719722894 719723316 5.390000e-153 551
8 TraesCS7A01G541000 chr7B 78.517 782 137 27 1388 2157 719083064 719082302 5.540000e-133 484
9 TraesCS7A01G541000 chr7B 88.410 371 30 8 3278 3637 717748217 717747849 5.660000e-118 435
10 TraesCS7A01G541000 chr7B 84.099 283 37 7 933 1211 719083541 719083263 2.190000e-67 267
11 TraesCS7A01G541000 chr7B 84.865 185 16 6 1 181 717751220 717751044 3.790000e-40 176
12 TraesCS7A01G541000 chr7D 92.499 1773 93 9 1276 3022 622002808 622004566 0.000000e+00 2501
13 TraesCS7A01G541000 chr7D 90.528 739 56 10 601 1332 622002095 622002826 0.000000e+00 965
14 TraesCS7A01G541000 chr7D 90.118 425 25 10 3278 3691 622004563 622004981 1.510000e-148 536
15 TraesCS7A01G541000 chr7D 78.832 822 149 21 1388 2198 620985576 620984769 7.020000e-147 531
16 TraesCS7A01G541000 chr7D 85.231 325 23 9 182 505 622001656 622001956 9.950000e-81 311
17 TraesCS7A01G541000 chr7D 84.043 282 39 5 933 1211 620986047 620985769 2.190000e-67 267
18 TraesCS7A01G541000 chr7D 87.895 190 11 7 1 181 622001429 622001615 2.890000e-51 213
19 TraesCS7A01G541000 chrUn 78.448 812 140 20 1383 2172 93057699 93056901 7.120000e-137 497
20 TraesCS7A01G541000 chrUn 78.319 821 143 20 1368 2166 310844772 310845579 7.120000e-137 497
21 TraesCS7A01G541000 chrUn 86.245 269 33 4 781 1047 378460233 378459967 4.660000e-74 289
22 TraesCS7A01G541000 chr2A 97.710 262 6 0 3020 3281 108247477 108247216 5.620000e-123 451
23 TraesCS7A01G541000 chr2A 86.245 269 33 4 781 1047 775613145 775612879 4.660000e-74 289
24 TraesCS7A01G541000 chr5A 96.350 274 9 1 3020 3292 431376542 431376269 2.020000e-122 449
25 TraesCS7A01G541000 chr6A 97.338 263 7 0 3020 3282 601238738 601238476 7.270000e-122 448
26 TraesCS7A01G541000 chr6A 93.174 293 14 5 3020 3310 18648280 18648568 3.410000e-115 425
27 TraesCS7A01G541000 chr6A 86.940 268 30 5 782 1047 34707133 34707397 2.790000e-76 296
28 TraesCS7A01G541000 chr3A 97.318 261 7 0 3021 3281 70707767 70707507 9.410000e-121 444
29 TraesCS7A01G541000 chr1B 96.310 271 9 1 3013 3282 235389747 235390017 9.410000e-121 444
30 TraesCS7A01G541000 chr1B 73.502 751 157 35 1395 2128 512677625 512676900 2.850000e-61 246
31 TraesCS7A01G541000 chr5B 96.629 267 8 1 3017 3282 677132875 677132609 3.380000e-120 442
32 TraesCS7A01G541000 chr4A 96.283 269 9 1 3014 3282 596723146 596723413 1.220000e-119 440
33 TraesCS7A01G541000 chr4A 94.326 282 14 2 3001 3281 13331448 13331168 7.320000e-117 431
34 TraesCS7A01G541000 chr4B 86.245 269 33 4 781 1047 624391323 624391589 4.660000e-74 289
35 TraesCS7A01G541000 chr6D 86.590 261 31 4 789 1047 460581379 460581121 6.030000e-73 285
36 TraesCS7A01G541000 chr6B 85.874 269 34 4 781 1047 103159573 103159307 2.170000e-72 283


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G541000 chr7A 717743772 717747462 3690 False 6817.000000 6817 100.0000 1 3691 1 chr7A.!!$F3 3690
1 TraesCS7A01G541000 chr7A 716403648 716404507 859 False 484.000000 484 77.1690 1294 2157 1 chr7A.!!$F2 863
2 TraesCS7A01G541000 chr7A 716246522 716247753 1231 False 373.000000 483 80.7885 931 2200 2 chr7A.!!$F4 1269
3 TraesCS7A01G541000 chr7B 719720418 719723316 2898 False 1950.000000 3349 90.8715 544 3691 2 chr7B.!!$F1 3147
4 TraesCS7A01G541000 chr7B 717747849 717751220 3371 True 1320.333333 3350 88.2590 1 3637 3 chr7B.!!$R1 3636
5 TraesCS7A01G541000 chr7B 719082302 719083541 1239 True 375.500000 484 81.3080 933 2157 2 chr7B.!!$R2 1224
6 TraesCS7A01G541000 chr7D 622001429 622004981 3552 False 905.200000 2501 89.2542 1 3691 5 chr7D.!!$F1 3690
7 TraesCS7A01G541000 chr7D 620984769 620986047 1278 True 399.000000 531 81.4375 933 2198 2 chr7D.!!$R1 1265
8 TraesCS7A01G541000 chrUn 93056901 93057699 798 True 497.000000 497 78.4480 1383 2172 1 chrUn.!!$R1 789
9 TraesCS7A01G541000 chrUn 310844772 310845579 807 False 497.000000 497 78.3190 1368 2166 1 chrUn.!!$F1 798
10 TraesCS7A01G541000 chr1B 512676900 512677625 725 True 246.000000 246 73.5020 1395 2128 1 chr1B.!!$R1 733

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
194 244 0.249657 CCAGCCAGCTCTCCGATAAC 60.250 60.0 0.00 0.0 0.00 1.89 F
371 431 0.460311 CGGTCTAAGATTGCCGTCCT 59.540 55.0 0.00 0.0 39.41 3.85 F
772 902 0.813184 CCAAGCAACTGCCATTCGAT 59.187 50.0 0.00 0.0 43.38 3.59 F
1380 1574 2.036992 CTGTCTCTTCAGCTGAACCTGT 59.963 50.0 25.16 0.0 34.47 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1380 1574 0.537653 TCGTGTGGCCCAATCGATAA 59.462 50.0 0.0 0.0 0.00 1.75 R
1654 1850 5.449041 GGCAATACTTGAGATGCGAAAATGA 60.449 40.0 0.0 0.0 39.66 2.57 R
2439 2697 2.561478 TGTTACCAGGTTGCCTCTTC 57.439 50.0 0.0 0.0 0.00 2.87 R
3268 3550 0.106116 GGTCTCATACTCCCTCCGGT 60.106 60.0 0.0 0.0 0.00 5.28 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 42 1.681486 CTCCGGCTTCCTCTTCCTCC 61.681 65.000 0.00 0.00 0.00 4.30
41 46 0.460722 GGCTTCCTCTTCCTCCGTAC 59.539 60.000 0.00 0.00 0.00 3.67
45 50 4.396522 GCTTCCTCTTCCTCCGTACTATA 58.603 47.826 0.00 0.00 0.00 1.31
67 72 1.376037 GGAGTAGCCGCTTTGCAGT 60.376 57.895 0.00 0.00 0.00 4.40
77 82 3.620187 CTTTGCAGTGTCGCTCGCG 62.620 63.158 0.00 0.00 41.35 5.87
194 244 0.249657 CCAGCCAGCTCTCCGATAAC 60.250 60.000 0.00 0.00 0.00 1.89
222 273 1.073722 TGCTCTGCAGTTTCCCCAG 59.926 57.895 14.67 2.55 33.32 4.45
231 282 0.771755 AGTTTCCCCAGACCAGTTCC 59.228 55.000 0.00 0.00 0.00 3.62
284 337 1.503800 GGCCTAACCCTAGGTTGCTA 58.496 55.000 8.29 0.00 46.35 3.49
288 341 3.431905 GCCTAACCCTAGGTTGCTAACTC 60.432 52.174 8.29 0.00 46.35 3.01
314 367 4.815533 TTACTCTGCTTCTTCTGATGCT 57.184 40.909 0.00 0.00 41.96 3.79
315 368 3.249986 ACTCTGCTTCTTCTGATGCTC 57.750 47.619 0.00 0.00 41.96 4.26
316 369 2.833338 ACTCTGCTTCTTCTGATGCTCT 59.167 45.455 0.00 0.00 41.96 4.09
317 370 3.261390 ACTCTGCTTCTTCTGATGCTCTT 59.739 43.478 0.00 0.00 41.96 2.85
318 371 3.859443 TCTGCTTCTTCTGATGCTCTTC 58.141 45.455 0.00 0.00 41.96 2.87
319 372 3.260128 TCTGCTTCTTCTGATGCTCTTCA 59.740 43.478 0.00 0.00 41.96 3.02
320 373 3.597255 TGCTTCTTCTGATGCTCTTCAG 58.403 45.455 6.47 6.47 43.70 3.02
357 417 1.239347 GCTTCTTTCTTTGCCGGTCT 58.761 50.000 1.90 0.00 0.00 3.85
363 423 4.906618 TCTTTCTTTGCCGGTCTAAGATT 58.093 39.130 17.85 0.00 36.65 2.40
371 431 0.460311 CGGTCTAAGATTGCCGTCCT 59.540 55.000 0.00 0.00 39.41 3.85
373 433 1.757699 GGTCTAAGATTGCCGTCCTCT 59.242 52.381 0.00 0.00 0.00 3.69
408 468 2.359531 CCGGCAAAACTGGTTTCTGTTA 59.640 45.455 0.00 0.00 40.35 2.41
409 469 3.550030 CCGGCAAAACTGGTTTCTGTTAG 60.550 47.826 0.00 0.00 40.35 2.34
441 501 2.255554 CTGCTGCTGCTGCTGTTG 59.744 61.111 27.67 13.98 39.81 3.33
442 502 3.898627 CTGCTGCTGCTGCTGTTGC 62.899 63.158 27.67 16.48 39.81 4.17
443 503 3.671411 GCTGCTGCTGCTGTTGCT 61.671 61.111 22.10 0.00 39.81 3.91
444 504 3.039988 CTGCTGCTGCTGTTGCTT 58.960 55.556 17.00 0.00 40.48 3.91
458 518 2.159819 TTGCTTCTCCGAAGCTCGCT 62.160 55.000 23.95 0.00 43.38 4.93
505 565 1.371881 GCGCCATACCGTCTAGCTC 60.372 63.158 0.00 0.00 0.00 4.09
516 614 1.402984 CGTCTAGCTCTTGAACGCCTT 60.403 52.381 0.00 0.00 0.00 4.35
519 617 2.497675 TCTAGCTCTTGAACGCCTTGAT 59.502 45.455 0.00 0.00 0.00 2.57
524 622 1.872952 TCTTGAACGCCTTGATGTGTG 59.127 47.619 0.00 0.00 0.00 3.82
533 632 3.270027 GCCTTGATGTGTGTATGTGCTA 58.730 45.455 0.00 0.00 0.00 3.49
583 710 7.786178 TTCTCCGTATAATTCAGAATTGGTG 57.214 36.000 17.38 10.88 32.38 4.17
646 776 3.384789 AGCAGGAACCTTTTGGAAAGAAC 59.615 43.478 2.15 0.00 44.07 3.01
648 778 4.382577 GCAGGAACCTTTTGGAAAGAACAA 60.383 41.667 2.15 0.00 44.07 2.83
682 812 8.186821 GCAGCTCACTTATTAACTCATCAATTT 58.813 33.333 0.00 0.00 0.00 1.82
721 851 2.490718 AGCAATGGCCACTGGAAGTAAA 60.491 45.455 17.28 0.00 44.77 2.01
723 853 6.065495 AGCAATGGCCACTGGAAGTAAAAC 62.065 45.833 17.28 0.00 44.77 2.43
772 902 0.813184 CCAAGCAACTGCCATTCGAT 59.187 50.000 0.00 0.00 43.38 3.59
787 917 6.823182 TGCCATTCGATTTTCTGAAGAAGATA 59.177 34.615 0.00 0.00 33.93 1.98
805 935 3.306166 AGATAACAAACGATTTCTCCGCG 59.694 43.478 0.00 0.00 0.00 6.46
853 983 2.359531 TGGAAGCGTTTACAAGGTTTGG 59.640 45.455 0.00 0.00 34.12 3.28
857 987 2.551032 AGCGTTTACAAGGTTTGGCTAC 59.449 45.455 0.00 0.00 34.12 3.58
996 1131 3.181465 TGAAGAAACTTCAGGAGAACGCT 60.181 43.478 9.67 0.00 0.00 5.07
1288 1478 6.888088 GGTAGGGAATCACCTTTAGCTTTTTA 59.112 38.462 0.00 0.00 42.09 1.52
1290 1480 7.849322 AGGGAATCACCTTTAGCTTTTTAAA 57.151 32.000 0.00 0.00 37.69 1.52
1353 1547 8.028938 GCATTCATATACAGGAACAAAAACAGT 58.971 33.333 0.00 0.00 0.00 3.55
1380 1574 2.036992 CTGTCTCTTCAGCTGAACCTGT 59.963 50.000 25.16 0.00 34.47 4.00
1654 1850 9.953697 TGTGCGACTTTACTATAAAACAAATTT 57.046 25.926 0.00 0.00 34.92 1.82
2408 2666 6.473455 GTGAAGCAACACATTATAGCCATTTC 59.527 38.462 8.11 0.00 40.11 2.17
2447 2705 8.806429 TGACAATATTTCTTAATGAAGAGGCA 57.194 30.769 0.00 0.00 42.66 4.75
2508 2766 6.682423 AGGTTTGCAAAAGAAAGGATTTTG 57.318 33.333 14.67 6.76 45.92 2.44
2591 2849 7.148255 GCAGTTTATTGTACACATTCCAGATGA 60.148 37.037 0.00 0.00 0.00 2.92
2732 3012 5.976458 TGGAAGACTCAAAATTTGCTTTGT 58.024 33.333 0.00 0.00 37.52 2.83
2772 3052 6.378661 TGCTATATATGCCAGTCTGGAAAT 57.621 37.500 23.77 16.43 40.96 2.17
2877 3159 0.033504 TTCTCCTCGGCAGTTGTCAC 59.966 55.000 0.00 0.00 0.00 3.67
2929 3211 7.583040 GTCAAATTTCTCACGAAAGTTACAGTC 59.417 37.037 0.00 0.00 43.25 3.51
2938 3220 7.531716 TCACGAAAGTTACAGTCAACATTTTT 58.468 30.769 0.00 0.00 46.40 1.94
3006 3288 4.211794 CACACACCATCATTTTCAAAAGGC 59.788 41.667 0.00 0.00 0.00 4.35
3023 3305 2.257207 AGGCCATGTGTGTGTAGTACT 58.743 47.619 5.01 0.00 0.00 2.73
3024 3306 2.637872 AGGCCATGTGTGTGTAGTACTT 59.362 45.455 5.01 0.00 0.00 2.24
3025 3307 3.000727 GGCCATGTGTGTGTAGTACTTC 58.999 50.000 0.00 0.00 0.00 3.01
3026 3308 3.000727 GCCATGTGTGTGTAGTACTTCC 58.999 50.000 0.00 0.00 0.00 3.46
3027 3309 3.306780 GCCATGTGTGTGTAGTACTTCCT 60.307 47.826 0.00 0.00 0.00 3.36
3028 3310 4.495422 CCATGTGTGTGTAGTACTTCCTC 58.505 47.826 0.00 0.00 0.00 3.71
3029 3311 4.495422 CATGTGTGTGTAGTACTTCCTCC 58.505 47.826 0.00 0.00 0.00 4.30
3030 3312 2.555325 TGTGTGTGTAGTACTTCCTCCG 59.445 50.000 0.00 0.00 0.00 4.63
3031 3313 2.094854 GTGTGTGTAGTACTTCCTCCGG 60.095 54.545 0.00 0.00 0.00 5.14
3032 3314 2.165998 GTGTGTAGTACTTCCTCCGGT 58.834 52.381 0.00 0.00 0.00 5.28
3033 3315 2.163211 GTGTGTAGTACTTCCTCCGGTC 59.837 54.545 0.00 0.00 0.00 4.79
3034 3316 1.747924 GTGTAGTACTTCCTCCGGTCC 59.252 57.143 0.00 0.00 0.00 4.46
3035 3317 1.637553 TGTAGTACTTCCTCCGGTCCT 59.362 52.381 0.00 0.00 0.00 3.85
3036 3318 2.042162 TGTAGTACTTCCTCCGGTCCTT 59.958 50.000 0.00 0.00 0.00 3.36
3037 3319 2.322339 AGTACTTCCTCCGGTCCTTT 57.678 50.000 0.00 0.00 0.00 3.11
3038 3320 2.617658 AGTACTTCCTCCGGTCCTTTT 58.382 47.619 0.00 0.00 0.00 2.27
3039 3321 3.782992 AGTACTTCCTCCGGTCCTTTTA 58.217 45.455 0.00 0.00 0.00 1.52
3040 3322 4.162651 AGTACTTCCTCCGGTCCTTTTAA 58.837 43.478 0.00 0.00 0.00 1.52
3041 3323 3.413846 ACTTCCTCCGGTCCTTTTAAC 57.586 47.619 0.00 0.00 0.00 2.01
3042 3324 2.977580 ACTTCCTCCGGTCCTTTTAACT 59.022 45.455 0.00 0.00 0.00 2.24
3043 3325 3.007723 ACTTCCTCCGGTCCTTTTAACTC 59.992 47.826 0.00 0.00 0.00 3.01
3044 3326 2.898662 TCCTCCGGTCCTTTTAACTCT 58.101 47.619 0.00 0.00 0.00 3.24
3045 3327 2.565834 TCCTCCGGTCCTTTTAACTCTG 59.434 50.000 0.00 0.00 0.00 3.35
3046 3328 2.347731 CTCCGGTCCTTTTAACTCTGC 58.652 52.381 0.00 0.00 0.00 4.26
3047 3329 1.695242 TCCGGTCCTTTTAACTCTGCA 59.305 47.619 0.00 0.00 0.00 4.41
3048 3330 2.304761 TCCGGTCCTTTTAACTCTGCAT 59.695 45.455 0.00 0.00 0.00 3.96
3049 3331 3.516300 TCCGGTCCTTTTAACTCTGCATA 59.484 43.478 0.00 0.00 0.00 3.14
3050 3332 4.163458 TCCGGTCCTTTTAACTCTGCATAT 59.837 41.667 0.00 0.00 0.00 1.78
3051 3333 4.881850 CCGGTCCTTTTAACTCTGCATATT 59.118 41.667 0.00 0.00 0.00 1.28
3052 3334 6.053005 CCGGTCCTTTTAACTCTGCATATTA 58.947 40.000 0.00 0.00 0.00 0.98
3053 3335 6.202954 CCGGTCCTTTTAACTCTGCATATTAG 59.797 42.308 0.00 0.00 0.00 1.73
3054 3336 6.202954 CGGTCCTTTTAACTCTGCATATTAGG 59.797 42.308 0.00 0.00 0.00 2.69
3055 3337 7.054751 GGTCCTTTTAACTCTGCATATTAGGT 58.945 38.462 0.00 0.00 0.00 3.08
3056 3338 7.556635 GGTCCTTTTAACTCTGCATATTAGGTT 59.443 37.037 0.00 0.00 0.00 3.50
3057 3339 8.957466 GTCCTTTTAACTCTGCATATTAGGTTT 58.043 33.333 0.00 0.00 0.00 3.27
3058 3340 8.956426 TCCTTTTAACTCTGCATATTAGGTTTG 58.044 33.333 0.00 0.00 0.00 2.93
3059 3341 8.739972 CCTTTTAACTCTGCATATTAGGTTTGT 58.260 33.333 0.00 0.00 0.00 2.83
3060 3342 9.774742 CTTTTAACTCTGCATATTAGGTTTGTC 57.225 33.333 0.00 0.00 0.00 3.18
3061 3343 7.859325 TTAACTCTGCATATTAGGTTTGTCC 57.141 36.000 0.00 0.00 0.00 4.02
3062 3344 4.442706 ACTCTGCATATTAGGTTTGTCCG 58.557 43.478 0.00 0.00 41.99 4.79
3063 3345 4.161565 ACTCTGCATATTAGGTTTGTCCGA 59.838 41.667 0.00 0.00 41.99 4.55
3064 3346 5.092554 TCTGCATATTAGGTTTGTCCGAA 57.907 39.130 0.00 0.00 41.99 4.30
3065 3347 5.116180 TCTGCATATTAGGTTTGTCCGAAG 58.884 41.667 0.00 0.00 41.99 3.79
3066 3348 4.839121 TGCATATTAGGTTTGTCCGAAGT 58.161 39.130 0.00 0.00 41.99 3.01
3067 3349 4.873827 TGCATATTAGGTTTGTCCGAAGTC 59.126 41.667 0.00 0.00 41.99 3.01
3068 3350 4.873827 GCATATTAGGTTTGTCCGAAGTCA 59.126 41.667 0.00 0.00 41.99 3.41
3069 3351 5.353123 GCATATTAGGTTTGTCCGAAGTCAA 59.647 40.000 0.00 0.00 41.99 3.18
3070 3352 6.038271 GCATATTAGGTTTGTCCGAAGTCAAT 59.962 38.462 0.00 0.00 41.99 2.57
3071 3353 7.630924 CATATTAGGTTTGTCCGAAGTCAATC 58.369 38.462 0.00 0.00 41.99 2.67
3072 3354 3.771577 AGGTTTGTCCGAAGTCAATCT 57.228 42.857 0.00 0.00 41.99 2.40
3073 3355 3.665190 AGGTTTGTCCGAAGTCAATCTC 58.335 45.455 0.00 0.00 41.99 2.75
3074 3356 3.071023 AGGTTTGTCCGAAGTCAATCTCA 59.929 43.478 0.00 0.00 41.99 3.27
3075 3357 4.003648 GGTTTGTCCGAAGTCAATCTCAT 58.996 43.478 0.00 0.00 0.00 2.90
3076 3358 4.455877 GGTTTGTCCGAAGTCAATCTCATT 59.544 41.667 0.00 0.00 0.00 2.57
3077 3359 5.390991 GGTTTGTCCGAAGTCAATCTCATTC 60.391 44.000 0.00 0.00 0.00 2.67
3078 3360 4.535526 TGTCCGAAGTCAATCTCATTCA 57.464 40.909 0.00 0.00 0.00 2.57
3079 3361 4.893608 TGTCCGAAGTCAATCTCATTCAA 58.106 39.130 0.00 0.00 0.00 2.69
3080 3362 4.690748 TGTCCGAAGTCAATCTCATTCAAC 59.309 41.667 0.00 0.00 0.00 3.18
3081 3363 4.932200 GTCCGAAGTCAATCTCATTCAACT 59.068 41.667 0.00 0.00 0.00 3.16
3082 3364 5.409826 GTCCGAAGTCAATCTCATTCAACTT 59.590 40.000 0.00 0.00 31.55 2.66
3083 3365 5.997746 TCCGAAGTCAATCTCATTCAACTTT 59.002 36.000 0.00 0.00 29.98 2.66
3084 3366 6.073058 TCCGAAGTCAATCTCATTCAACTTTG 60.073 38.462 0.00 0.00 31.93 2.77
3085 3367 6.073058 CCGAAGTCAATCTCATTCAACTTTGA 60.073 38.462 0.00 0.00 32.90 2.69
3086 3368 6.794158 CGAAGTCAATCTCATTCAACTTTGAC 59.206 38.462 5.67 5.67 41.88 3.18
3087 3369 6.566197 AGTCAATCTCATTCAACTTTGACC 57.434 37.500 9.31 0.00 42.29 4.02
3088 3370 6.064060 AGTCAATCTCATTCAACTTTGACCA 58.936 36.000 9.31 0.00 42.29 4.02
3089 3371 6.547141 AGTCAATCTCATTCAACTTTGACCAA 59.453 34.615 9.31 0.00 42.29 3.67
3090 3372 6.860023 GTCAATCTCATTCAACTTTGACCAAG 59.140 38.462 0.00 0.00 37.86 3.61
3134 3416 9.638239 AAACATTCACATAACAACACCAATATC 57.362 29.630 0.00 0.00 0.00 1.63
3135 3417 8.579850 ACATTCACATAACAACACCAATATCT 57.420 30.769 0.00 0.00 0.00 1.98
3136 3418 9.023962 ACATTCACATAACAACACCAATATCTT 57.976 29.630 0.00 0.00 0.00 2.40
3137 3419 9.859427 CATTCACATAACAACACCAATATCTTT 57.141 29.630 0.00 0.00 0.00 2.52
3140 3422 9.952030 TCACATAACAACACCAATATCTTTAGA 57.048 29.630 0.00 0.00 0.00 2.10
3147 3429 9.911788 ACAACACCAATATCTTTAGATTCATCT 57.088 29.630 0.00 0.00 40.86 2.90
3150 3432 9.347240 ACACCAATATCTTTAGATTCATCTTGG 57.653 33.333 0.00 6.80 38.32 3.61
3151 3433 9.565090 CACCAATATCTTTAGATTCATCTTGGA 57.435 33.333 16.18 0.00 38.32 3.53
3242 3524 6.961359 ACTTAACAAAGTTTGACTTTTGGC 57.039 33.333 22.23 0.00 45.38 4.52
3243 3525 6.459923 ACTTAACAAAGTTTGACTTTTGGCA 58.540 32.000 22.23 0.00 45.38 4.92
3244 3526 6.931840 ACTTAACAAAGTTTGACTTTTGGCAA 59.068 30.769 22.23 0.00 45.38 4.52
3258 3540 3.984838 GGCAAAACCAATGTGCAGA 57.015 47.368 0.00 0.00 40.12 4.26
3259 3541 1.787012 GGCAAAACCAATGTGCAGAG 58.213 50.000 0.00 0.00 40.12 3.35
3260 3542 1.069049 GGCAAAACCAATGTGCAGAGT 59.931 47.619 0.00 0.00 40.12 3.24
3261 3543 2.295909 GGCAAAACCAATGTGCAGAGTA 59.704 45.455 0.00 0.00 40.12 2.59
3262 3544 3.243704 GGCAAAACCAATGTGCAGAGTAA 60.244 43.478 0.00 0.00 40.12 2.24
3263 3545 4.367450 GCAAAACCAATGTGCAGAGTAAA 58.633 39.130 0.00 0.00 38.19 2.01
3264 3546 4.808364 GCAAAACCAATGTGCAGAGTAAAA 59.192 37.500 0.00 0.00 38.19 1.52
3265 3547 5.293079 GCAAAACCAATGTGCAGAGTAAAAA 59.707 36.000 0.00 0.00 38.19 1.94
3266 3548 6.509997 GCAAAACCAATGTGCAGAGTAAAAAG 60.510 38.462 0.00 0.00 38.19 2.27
3267 3549 4.853924 ACCAATGTGCAGAGTAAAAAGG 57.146 40.909 0.00 0.00 0.00 3.11
3268 3550 4.469657 ACCAATGTGCAGAGTAAAAAGGA 58.530 39.130 0.00 0.00 0.00 3.36
3269 3551 4.278419 ACCAATGTGCAGAGTAAAAAGGAC 59.722 41.667 0.00 0.00 0.00 3.85
3270 3552 4.321230 CCAATGTGCAGAGTAAAAAGGACC 60.321 45.833 0.00 0.00 0.00 4.46
3271 3553 2.489971 TGTGCAGAGTAAAAAGGACCG 58.510 47.619 0.00 0.00 0.00 4.79
3272 3554 1.804748 GTGCAGAGTAAAAAGGACCGG 59.195 52.381 0.00 0.00 0.00 5.28
3273 3555 1.695242 TGCAGAGTAAAAAGGACCGGA 59.305 47.619 9.46 0.00 0.00 5.14
3274 3556 2.289444 TGCAGAGTAAAAAGGACCGGAG 60.289 50.000 9.46 0.00 0.00 4.63
3295 3577 2.432510 GGGAGTATGAGACCACAAGGAG 59.567 54.545 0.00 0.00 38.69 3.69
3304 3586 5.580998 TGAGACCACAAGGAGTAACTCTAT 58.419 41.667 0.00 0.00 38.69 1.98
3391 3674 4.216042 TGTCTGTAATTGCCATGTTGTCAG 59.784 41.667 0.00 0.00 0.00 3.51
3456 3739 5.992217 AGGTTATAGTGCTAGTTGCTATTGC 59.008 40.000 0.00 0.00 43.37 3.56
3494 3777 4.582656 GCTTACATGGCAACCAATGGTATA 59.417 41.667 4.88 0.00 36.95 1.47
3500 3783 5.638530 TGGCAACCAATGGTATATGTCTA 57.361 39.130 4.88 0.00 33.12 2.59
3508 3791 5.124457 CCAATGGTATATGTCTATTGCTGGC 59.876 44.000 10.83 0.00 34.16 4.85
3513 3796 6.013812 TGGTATATGTCTATTGCTGGCATGTA 60.014 38.462 0.00 0.00 0.00 2.29
3514 3797 7.050377 GGTATATGTCTATTGCTGGCATGTAT 58.950 38.462 0.00 0.00 0.00 2.29
3538 3821 5.531634 ACCAATGTTATTTGTCTGTTGCTG 58.468 37.500 0.00 0.00 0.00 4.41
3569 3862 2.621556 ACCTTGGTAATTGGTGGCAT 57.378 45.000 0.00 0.00 32.16 4.40
3623 3916 2.195727 TGGCAGTGGAATACTCATGGA 58.804 47.619 0.00 0.00 37.60 3.41
3648 3941 3.287867 AATTGCTCCATGAAGGACGAT 57.712 42.857 0.00 0.00 43.07 3.73
3672 3965 0.468400 GGCAATAATACCCCCGGCAA 60.468 55.000 0.00 0.00 0.00 4.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
194 244 2.438075 GCAGAGCAGAAGCAGGGG 60.438 66.667 0.00 0.00 45.49 4.79
231 282 0.984961 TCTGGAGGGAGGAATGGCAG 60.985 60.000 0.00 0.00 0.00 4.85
284 337 4.984146 AGAAGCAGAGTAAAAGGGAGTT 57.016 40.909 0.00 0.00 0.00 3.01
288 341 4.899502 TCAGAAGAAGCAGAGTAAAAGGG 58.100 43.478 0.00 0.00 0.00 3.95
314 367 3.220110 AGTACACCGTGAAGACTGAAGA 58.780 45.455 5.28 0.00 0.00 2.87
315 368 3.253677 AGAGTACACCGTGAAGACTGAAG 59.746 47.826 5.28 0.00 0.00 3.02
316 369 3.004419 CAGAGTACACCGTGAAGACTGAA 59.996 47.826 5.28 0.00 0.00 3.02
317 370 2.552743 CAGAGTACACCGTGAAGACTGA 59.447 50.000 5.28 0.00 0.00 3.41
318 371 2.922758 GCAGAGTACACCGTGAAGACTG 60.923 54.545 5.28 10.05 0.00 3.51
319 372 1.269998 GCAGAGTACACCGTGAAGACT 59.730 52.381 5.28 5.44 0.00 3.24
320 373 1.269998 AGCAGAGTACACCGTGAAGAC 59.730 52.381 5.28 0.44 0.00 3.01
357 417 0.901827 TGCAGAGGACGGCAATCTTA 59.098 50.000 0.00 0.00 43.34 2.10
363 423 0.613260 ATAAGTTGCAGAGGACGGCA 59.387 50.000 0.00 0.00 44.44 5.69
408 468 1.374190 CAGCAGTGCCTCCTGAACT 59.626 57.895 12.58 0.00 34.23 3.01
409 469 2.331132 GCAGCAGTGCCTCCTGAAC 61.331 63.158 12.58 0.00 44.72 3.18
436 496 1.074752 GAGCTTCGGAGAAGCAACAG 58.925 55.000 29.03 0.00 45.90 3.16
437 497 0.667487 CGAGCTTCGGAGAAGCAACA 60.667 55.000 29.03 0.00 45.90 3.33
438 498 1.960994 GCGAGCTTCGGAGAAGCAAC 61.961 60.000 29.03 21.93 45.90 4.17
439 499 1.738099 GCGAGCTTCGGAGAAGCAA 60.738 57.895 29.03 0.00 45.90 3.91
440 500 2.125912 GCGAGCTTCGGAGAAGCA 60.126 61.111 29.03 0.00 45.90 3.91
441 501 2.164026 CAGCGAGCTTCGGAGAAGC 61.164 63.158 22.78 22.78 45.90 3.86
442 502 1.518133 CCAGCGAGCTTCGGAGAAG 60.518 63.158 0.00 5.49 45.90 2.85
443 503 2.276116 ACCAGCGAGCTTCGGAGAA 61.276 57.895 8.24 0.00 45.90 2.87
444 504 2.676822 ACCAGCGAGCTTCGGAGA 60.677 61.111 8.24 0.00 40.84 3.71
505 565 1.603802 ACACACATCAAGGCGTTCAAG 59.396 47.619 0.00 0.00 0.00 3.02
516 614 3.270027 GGCTTAGCACATACACACATCA 58.730 45.455 6.53 0.00 0.00 3.07
519 617 1.628340 AGGGCTTAGCACATACACACA 59.372 47.619 9.85 0.00 32.33 3.72
524 622 2.939103 CTGACAAGGGCTTAGCACATAC 59.061 50.000 9.85 0.00 32.33 2.39
583 710 1.066929 CCAAAAGGGCCATTACACAGC 60.067 52.381 1.49 0.00 0.00 4.40
626 753 5.337578 TTGTTCTTTCCAAAAGGTTCCTG 57.662 39.130 0.00 0.00 0.00 3.86
646 776 1.027357 AGTGAGCTGCCACAAGTTTG 58.973 50.000 18.81 0.00 39.42 2.93
648 778 2.638480 TAAGTGAGCTGCCACAAGTT 57.362 45.000 18.81 10.07 39.42 2.66
696 826 0.469705 TCCAGTGGCCATTGCTGTTT 60.470 50.000 22.26 0.00 37.74 2.83
754 884 2.642139 AATCGAATGGCAGTTGCTTG 57.358 45.000 3.88 0.00 41.70 4.01
787 917 0.515564 CCGCGGAGAAATCGTTTGTT 59.484 50.000 24.07 0.00 0.00 2.83
805 935 0.462759 CTCCACCAATCTTCCGCTCC 60.463 60.000 0.00 0.00 0.00 4.70
844 974 2.593026 TGGGAAAGTAGCCAAACCTTG 58.407 47.619 0.00 0.00 0.00 3.61
853 983 8.910351 ATAGAAGATGTTAATGGGAAAGTAGC 57.090 34.615 0.00 0.00 0.00 3.58
857 987 8.986929 AAGGATAGAAGATGTTAATGGGAAAG 57.013 34.615 0.00 0.00 0.00 2.62
996 1131 1.675310 CTTGTCAGGCGGCATTGGA 60.675 57.895 13.08 0.00 0.00 3.53
1068 1203 2.507484 CAGCAGAATCCAACCAACTCA 58.493 47.619 0.00 0.00 0.00 3.41
1380 1574 0.537653 TCGTGTGGCCCAATCGATAA 59.462 50.000 0.00 0.00 0.00 1.75
1654 1850 5.449041 GGCAATACTTGAGATGCGAAAATGA 60.449 40.000 0.00 0.00 39.66 2.57
1918 2156 7.009440 CGATCATTGGTTATAGTATGCAAACG 58.991 38.462 0.00 0.00 0.00 3.60
1996 2241 7.763528 CCATCTGTATCTAAGGATGCATACTTC 59.236 40.741 27.55 13.36 42.09 3.01
2439 2697 2.561478 TGTTACCAGGTTGCCTCTTC 57.439 50.000 0.00 0.00 0.00 2.87
2447 2705 6.095440 GCAGATTGTATGAATGTTACCAGGTT 59.905 38.462 0.00 0.00 0.00 3.50
2508 2766 3.243907 CCCTAGTATGCTACACTTGAGGC 60.244 52.174 0.00 0.00 0.00 4.70
2538 2796 5.597182 GGTTATATAGATGTCCGCTGGGATA 59.403 44.000 0.00 0.00 46.14 2.59
2819 3100 2.380064 TCTTGTTGCACCCCATCTTT 57.620 45.000 0.00 0.00 0.00 2.52
2877 3159 5.103000 CGTCTTCTTGTGGTACCATCTTAG 58.897 45.833 19.72 12.71 0.00 2.18
2929 3211 4.379813 CCGTCCTCTGGATCAAAAATGTTG 60.380 45.833 0.00 0.00 32.73 3.33
2938 3220 1.080354 AACCCCGTCCTCTGGATCA 59.920 57.895 0.00 0.00 32.73 2.92
3006 3288 4.495422 GAGGAAGTACTACACACACATGG 58.505 47.826 0.00 0.00 0.00 3.66
3026 3308 2.289444 TGCAGAGTTAAAAGGACCGGAG 60.289 50.000 9.46 0.00 0.00 4.63
3027 3309 1.695242 TGCAGAGTTAAAAGGACCGGA 59.305 47.619 9.46 0.00 0.00 5.14
3028 3310 2.178912 TGCAGAGTTAAAAGGACCGG 57.821 50.000 0.00 0.00 0.00 5.28
3029 3311 6.202954 CCTAATATGCAGAGTTAAAAGGACCG 59.797 42.308 0.00 0.00 0.00 4.79
3030 3312 7.054751 ACCTAATATGCAGAGTTAAAAGGACC 58.945 38.462 2.56 0.00 0.00 4.46
3031 3313 8.507524 AACCTAATATGCAGAGTTAAAAGGAC 57.492 34.615 2.56 0.00 0.00 3.85
3032 3314 8.956426 CAAACCTAATATGCAGAGTTAAAAGGA 58.044 33.333 2.56 0.00 0.00 3.36
3033 3315 8.739972 ACAAACCTAATATGCAGAGTTAAAAGG 58.260 33.333 0.00 0.00 0.00 3.11
3034 3316 9.774742 GACAAACCTAATATGCAGAGTTAAAAG 57.225 33.333 0.00 0.00 0.00 2.27
3035 3317 8.736244 GGACAAACCTAATATGCAGAGTTAAAA 58.264 33.333 0.00 0.00 35.41 1.52
3036 3318 7.065324 CGGACAAACCTAATATGCAGAGTTAAA 59.935 37.037 0.00 0.00 36.31 1.52
3037 3319 6.537301 CGGACAAACCTAATATGCAGAGTTAA 59.463 38.462 0.00 0.00 36.31 2.01
3038 3320 6.046593 CGGACAAACCTAATATGCAGAGTTA 58.953 40.000 0.00 0.00 36.31 2.24
3039 3321 4.876107 CGGACAAACCTAATATGCAGAGTT 59.124 41.667 0.00 0.00 36.31 3.01
3040 3322 4.161565 TCGGACAAACCTAATATGCAGAGT 59.838 41.667 0.00 0.00 36.31 3.24
3041 3323 4.693283 TCGGACAAACCTAATATGCAGAG 58.307 43.478 0.00 0.00 36.31 3.35
3042 3324 4.746535 TCGGACAAACCTAATATGCAGA 57.253 40.909 0.00 0.00 36.31 4.26
3043 3325 4.876107 ACTTCGGACAAACCTAATATGCAG 59.124 41.667 0.00 0.00 36.31 4.41
3044 3326 4.839121 ACTTCGGACAAACCTAATATGCA 58.161 39.130 0.00 0.00 36.31 3.96
3045 3327 4.873827 TGACTTCGGACAAACCTAATATGC 59.126 41.667 0.00 0.00 36.31 3.14
3046 3328 6.978343 TTGACTTCGGACAAACCTAATATG 57.022 37.500 0.00 0.00 36.31 1.78
3047 3329 7.565680 AGATTGACTTCGGACAAACCTAATAT 58.434 34.615 0.00 0.00 33.90 1.28
3048 3330 6.942976 AGATTGACTTCGGACAAACCTAATA 58.057 36.000 0.00 0.00 33.90 0.98
3049 3331 5.805728 AGATTGACTTCGGACAAACCTAAT 58.194 37.500 0.00 0.00 33.90 1.73
3050 3332 5.221561 TGAGATTGACTTCGGACAAACCTAA 60.222 40.000 0.00 0.00 33.90 2.69
3051 3333 4.282449 TGAGATTGACTTCGGACAAACCTA 59.718 41.667 0.00 0.00 33.90 3.08
3052 3334 3.071023 TGAGATTGACTTCGGACAAACCT 59.929 43.478 0.00 0.00 33.90 3.50
3053 3335 3.399330 TGAGATTGACTTCGGACAAACC 58.601 45.455 0.00 0.00 33.90 3.27
3054 3336 5.179368 TGAATGAGATTGACTTCGGACAAAC 59.821 40.000 0.00 0.00 33.90 2.93
3055 3337 5.304778 TGAATGAGATTGACTTCGGACAAA 58.695 37.500 0.00 0.00 33.90 2.83
3056 3338 4.893608 TGAATGAGATTGACTTCGGACAA 58.106 39.130 0.00 0.00 34.59 3.18
3057 3339 4.535526 TGAATGAGATTGACTTCGGACA 57.464 40.909 0.00 0.00 0.00 4.02
3058 3340 4.932200 AGTTGAATGAGATTGACTTCGGAC 59.068 41.667 0.00 0.00 0.00 4.79
3059 3341 5.152623 AGTTGAATGAGATTGACTTCGGA 57.847 39.130 0.00 0.00 0.00 4.55
3060 3342 5.869753 AAGTTGAATGAGATTGACTTCGG 57.130 39.130 0.00 0.00 0.00 4.30
3061 3343 6.794158 GTCAAAGTTGAATGAGATTGACTTCG 59.206 38.462 8.70 0.00 41.92 3.79
3062 3344 7.080724 GGTCAAAGTTGAATGAGATTGACTTC 58.919 38.462 13.97 0.00 43.66 3.01
3063 3345 6.547141 TGGTCAAAGTTGAATGAGATTGACTT 59.453 34.615 13.97 0.00 43.66 3.01
3064 3346 6.064060 TGGTCAAAGTTGAATGAGATTGACT 58.936 36.000 13.97 0.00 43.66 3.41
3065 3347 6.317789 TGGTCAAAGTTGAATGAGATTGAC 57.682 37.500 7.68 7.68 43.51 3.18
3066 3348 6.957920 TTGGTCAAAGTTGAATGAGATTGA 57.042 33.333 0.00 0.00 39.21 2.57
3108 3390 9.638239 GATATTGGTGTTGTTATGTGAATGTTT 57.362 29.630 0.00 0.00 0.00 2.83
3109 3391 9.023962 AGATATTGGTGTTGTTATGTGAATGTT 57.976 29.630 0.00 0.00 0.00 2.71
3110 3392 8.579850 AGATATTGGTGTTGTTATGTGAATGT 57.420 30.769 0.00 0.00 0.00 2.71
3111 3393 9.859427 AAAGATATTGGTGTTGTTATGTGAATG 57.141 29.630 0.00 0.00 0.00 2.67
3114 3396 9.952030 TCTAAAGATATTGGTGTTGTTATGTGA 57.048 29.630 0.00 0.00 0.00 3.58
3121 3403 9.911788 AGATGAATCTAAAGATATTGGTGTTGT 57.088 29.630 0.00 0.00 34.85 3.32
3124 3406 9.347240 CCAAGATGAATCTAAAGATATTGGTGT 57.653 33.333 0.00 0.00 35.76 4.16
3125 3407 9.565090 TCCAAGATGAATCTAAAGATATTGGTG 57.435 33.333 0.00 3.53 35.76 4.17
3219 3501 6.459923 TGCCAAAAGTCAAACTTTGTTAAGT 58.540 32.000 5.88 0.00 46.78 2.24
3220 3502 6.959671 TGCCAAAAGTCAAACTTTGTTAAG 57.040 33.333 5.88 0.00 46.78 1.85
3221 3503 7.730364 TTTGCCAAAAGTCAAACTTTGTTAA 57.270 28.000 5.88 0.00 46.78 2.01
3222 3504 7.308049 GGTTTTGCCAAAAGTCAAACTTTGTTA 60.308 33.333 2.15 0.00 46.78 2.41
3223 3505 6.434596 GTTTTGCCAAAAGTCAAACTTTGTT 58.565 32.000 2.15 0.00 46.78 2.83
3224 3506 5.049060 GGTTTTGCCAAAAGTCAAACTTTGT 60.049 36.000 2.15 0.00 46.78 2.83
3225 3507 5.049129 TGGTTTTGCCAAAAGTCAAACTTTG 60.049 36.000 2.15 0.00 43.56 2.77
3226 3508 5.066593 TGGTTTTGCCAAAAGTCAAACTTT 58.933 33.333 2.15 0.00 45.94 2.66
3227 3509 4.646572 TGGTTTTGCCAAAAGTCAAACTT 58.353 34.783 2.15 0.00 45.94 2.66
3228 3510 4.278975 TGGTTTTGCCAAAAGTCAAACT 57.721 36.364 2.15 0.00 45.94 2.66
3240 3522 1.069049 ACTCTGCACATTGGTTTTGCC 59.931 47.619 0.00 0.00 35.26 4.52
3241 3523 2.514205 ACTCTGCACATTGGTTTTGC 57.486 45.000 0.00 0.00 36.76 3.68
3242 3524 6.018832 CCTTTTTACTCTGCACATTGGTTTTG 60.019 38.462 0.00 0.00 0.00 2.44
3243 3525 6.048509 CCTTTTTACTCTGCACATTGGTTTT 58.951 36.000 0.00 0.00 0.00 2.43
3244 3526 5.362430 TCCTTTTTACTCTGCACATTGGTTT 59.638 36.000 0.00 0.00 0.00 3.27
3245 3527 4.892934 TCCTTTTTACTCTGCACATTGGTT 59.107 37.500 0.00 0.00 0.00 3.67
3246 3528 4.278419 GTCCTTTTTACTCTGCACATTGGT 59.722 41.667 0.00 0.00 0.00 3.67
3247 3529 4.321230 GGTCCTTTTTACTCTGCACATTGG 60.321 45.833 0.00 0.00 0.00 3.16
3248 3530 4.613622 CGGTCCTTTTTACTCTGCACATTG 60.614 45.833 0.00 0.00 0.00 2.82
3249 3531 3.502211 CGGTCCTTTTTACTCTGCACATT 59.498 43.478 0.00 0.00 0.00 2.71
3250 3532 3.074412 CGGTCCTTTTTACTCTGCACAT 58.926 45.455 0.00 0.00 0.00 3.21
3251 3533 2.489971 CGGTCCTTTTTACTCTGCACA 58.510 47.619 0.00 0.00 0.00 4.57
3252 3534 1.804748 CCGGTCCTTTTTACTCTGCAC 59.195 52.381 0.00 0.00 0.00 4.57
3253 3535 1.695242 TCCGGTCCTTTTTACTCTGCA 59.305 47.619 0.00 0.00 0.00 4.41
3254 3536 2.347731 CTCCGGTCCTTTTTACTCTGC 58.652 52.381 0.00 0.00 0.00 4.26
3255 3537 2.354805 CCCTCCGGTCCTTTTTACTCTG 60.355 54.545 0.00 0.00 0.00 3.35
3256 3538 1.907255 CCCTCCGGTCCTTTTTACTCT 59.093 52.381 0.00 0.00 0.00 3.24
3257 3539 1.904537 TCCCTCCGGTCCTTTTTACTC 59.095 52.381 0.00 0.00 0.00 2.59
3258 3540 1.907255 CTCCCTCCGGTCCTTTTTACT 59.093 52.381 0.00 0.00 0.00 2.24
3259 3541 1.627329 ACTCCCTCCGGTCCTTTTTAC 59.373 52.381 0.00 0.00 0.00 2.01
3260 3542 2.034436 ACTCCCTCCGGTCCTTTTTA 57.966 50.000 0.00 0.00 0.00 1.52
3261 3543 2.034436 TACTCCCTCCGGTCCTTTTT 57.966 50.000 0.00 0.00 0.00 1.94
3262 3544 1.838077 CATACTCCCTCCGGTCCTTTT 59.162 52.381 0.00 0.00 0.00 2.27
3263 3545 1.007963 TCATACTCCCTCCGGTCCTTT 59.992 52.381 0.00 0.00 0.00 3.11
3264 3546 0.635009 TCATACTCCCTCCGGTCCTT 59.365 55.000 0.00 0.00 0.00 3.36
3265 3547 0.186386 CTCATACTCCCTCCGGTCCT 59.814 60.000 0.00 0.00 0.00 3.85
3266 3548 0.185416 TCTCATACTCCCTCCGGTCC 59.815 60.000 0.00 0.00 0.00 4.46
3267 3549 1.320507 GTCTCATACTCCCTCCGGTC 58.679 60.000 0.00 0.00 0.00 4.79
3268 3550 0.106116 GGTCTCATACTCCCTCCGGT 60.106 60.000 0.00 0.00 0.00 5.28
3269 3551 0.106167 TGGTCTCATACTCCCTCCGG 60.106 60.000 0.00 0.00 0.00 5.14
3270 3552 1.033574 GTGGTCTCATACTCCCTCCG 58.966 60.000 0.00 0.00 0.00 4.63
3271 3553 2.160721 TGTGGTCTCATACTCCCTCC 57.839 55.000 0.00 0.00 0.00 4.30
3272 3554 2.432510 CCTTGTGGTCTCATACTCCCTC 59.567 54.545 0.00 0.00 0.00 4.30
3273 3555 2.044492 TCCTTGTGGTCTCATACTCCCT 59.956 50.000 0.00 0.00 34.23 4.20
3274 3556 2.432510 CTCCTTGTGGTCTCATACTCCC 59.567 54.545 0.00 0.00 34.23 4.30
3275 3557 3.100671 ACTCCTTGTGGTCTCATACTCC 58.899 50.000 0.00 0.00 34.23 3.85
3276 3558 5.419471 AGTTACTCCTTGTGGTCTCATACTC 59.581 44.000 0.00 0.00 34.23 2.59
3277 3559 5.334421 AGTTACTCCTTGTGGTCTCATACT 58.666 41.667 0.00 0.00 34.23 2.12
3278 3560 5.419471 AGAGTTACTCCTTGTGGTCTCATAC 59.581 44.000 8.96 0.00 34.23 2.39
3279 3561 5.580998 AGAGTTACTCCTTGTGGTCTCATA 58.419 41.667 8.96 0.00 34.23 2.15
3280 3562 4.421131 AGAGTTACTCCTTGTGGTCTCAT 58.579 43.478 8.96 0.00 34.23 2.90
3281 3563 3.845860 AGAGTTACTCCTTGTGGTCTCA 58.154 45.455 8.96 0.00 34.23 3.27
3456 3739 4.539509 TGTAAGCAACAAACAGTTACCG 57.460 40.909 0.00 0.00 38.74 4.02
3494 3777 5.221904 TGGTATACATGCCAGCAATAGACAT 60.222 40.000 5.01 0.00 37.65 3.06
3500 3783 4.217510 ACATTGGTATACATGCCAGCAAT 58.782 39.130 5.01 11.35 43.47 3.56
3513 3796 7.315142 CAGCAACAGACAAATAACATTGGTAT 58.685 34.615 0.00 0.00 34.56 2.73
3514 3797 6.294453 CCAGCAACAGACAAATAACATTGGTA 60.294 38.462 0.00 0.00 34.56 3.25
3538 3821 6.071952 CCAATTACCAAGGTATATCACATGCC 60.072 42.308 0.00 0.00 0.00 4.40
3580 3873 7.467811 GCCATTCTCATCTCGTTATGTTTCAAT 60.468 37.037 0.86 0.00 0.00 2.57
3588 3881 4.375272 CACTGCCATTCTCATCTCGTTAT 58.625 43.478 0.00 0.00 0.00 1.89
3595 3888 4.712476 AGTATTCCACTGCCATTCTCATC 58.288 43.478 0.00 0.00 35.62 2.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.